Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057683.t1 | XP_003607198.1 | 92.6 | 538 | 11 | 3 | 1 | 510 | 1 | 537 | 2.60E-282 | 980.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057683.t1 | Q9SKR2 | 67.8 | 541 | 142 | 5 | 1 | 510 | 1 | 540 | 8.2e-213 | 741.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057683.t1 | G7JNF4 | 92.6 | 538 | 11 | 3 | 1 | 510 | 1 | 537 | 1.8e-282 | 980.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054585 | MS.gene057683 | 0.815354 | 9.65E-52 | -1.69E-46 |
| MS.gene057683 | MS.gene32853 | 0.806502 | 7.97E-50 | -1.69E-46 |
| MS.gene057683 | MS.gene36285 | 0.803204 | 3.90E-49 | -1.69E-46 |
| MS.gene057683 | MS.gene37459 | 0.802411 | 5.68E-49 | -1.69E-46 |
| MS.gene057683 | MS.gene89100 | 0.831556 | 1.56E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057683.t1 | MTR_4g073400 | 92.565 | 538 | 11 | 3 | 1 | 510 | 1 | 537 | 0.0 | 996 |
| MS.gene057683.t1 | MTR_1g025550 | 67.100 | 538 | 144 | 5 | 1 | 509 | 1 | 534 | 0.0 | 735 |
| MS.gene057683.t1 | MTR_1g094810 | 50.277 | 541 | 226 | 8 | 1 | 510 | 1 | 529 | 1.71e-173 | 499 |
| MS.gene057683.t1 | MTR_4g073510 | 82.836 | 134 | 18 | 1 | 299 | 432 | 193 | 321 | 3.09e-65 | 217 |
| MS.gene057683.t1 | MTR_4g073510 | 36.723 | 354 | 177 | 12 | 90 | 405 | 52 | 396 | 1.04e-37 | 143 |
| MS.gene057683.t1 | MTR_4g115660 | 27.916 | 523 | 299 | 15 | 50 | 507 | 48 | 557 | 3.59e-54 | 191 |
| MS.gene057683.t1 | MTR_3g106660 | 26.894 | 528 | 297 | 15 | 50 | 507 | 48 | 556 | 1.95e-49 | 179 |
| MS.gene057683.t1 | MTR_7g075790 | 29.310 | 406 | 238 | 12 | 1 | 368 | 1 | 395 | 2.87e-49 | 177 |
| MS.gene057683.t1 | MTR_8g035590 | 28.878 | 419 | 246 | 11 | 1 | 379 | 1 | 407 | 1.53e-45 | 167 |
| MS.gene057683.t1 | MTR_7g080570 | 64.925 | 134 | 43 | 4 | 376 | 506 | 31 | 163 | 3.85e-43 | 150 |
| MS.gene057683.t1 | MTR_6g069470 | 44.944 | 89 | 44 | 3 | 228 | 316 | 13 | 96 | 1.44e-12 | 66.6 |
| MS.gene057683.t1 | MTR_3g067585 | 41.573 | 89 | 47 | 3 | 228 | 316 | 1 | 84 | 2.23e-11 | 62.8 |
| MS.gene057683.t1 | MTR_2g011590 | 40.000 | 85 | 46 | 3 | 232 | 316 | 4 | 83 | 9.57e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057683.t1 | AT2G20990 | 68.207 | 541 | 140 | 6 | 1 | 510 | 1 | 540 | 0.0 | 751 |
| MS.gene057683.t1 | AT1G20080 | 66.357 | 538 | 151 | 4 | 1 | 510 | 1 | 536 | 0.0 | 743 |
| MS.gene057683.t1 | AT1G20080 | 66.357 | 538 | 151 | 4 | 1 | 510 | 1 | 536 | 0.0 | 743 |
| MS.gene057683.t1 | AT1G20080 | 66.357 | 538 | 151 | 4 | 1 | 510 | 1 | 536 | 0.0 | 743 |
| MS.gene057683.t1 | AT1G20080 | 66.357 | 538 | 151 | 4 | 1 | 510 | 1 | 536 | 0.0 | 743 |
| MS.gene057683.t1 | AT1G20080 | 66.357 | 538 | 151 | 4 | 1 | 510 | 1 | 536 | 0.0 | 743 |
| MS.gene057683.t1 | AT2G20990 | 65.310 | 565 | 140 | 7 | 1 | 510 | 1 | 564 | 0.0 | 736 |
| MS.gene057683.t1 | AT2G20990 | 63.731 | 579 | 140 | 7 | 1 | 510 | 1 | 578 | 0.0 | 733 |
| MS.gene057683.t1 | AT5G04220 | 49.538 | 541 | 241 | 6 | 1 | 510 | 1 | 540 | 1.11e-180 | 518 |
| MS.gene057683.t1 | AT5G04220 | 50.104 | 479 | 207 | 6 | 63 | 510 | 1 | 478 | 7.86e-162 | 468 |
| MS.gene057683.t1 | AT2G21010 | 63.359 | 262 | 87 | 3 | 251 | 510 | 1 | 255 | 2.32e-115 | 341 |
| MS.gene057683.t1 | AT5G04220 | 50.949 | 316 | 152 | 3 | 198 | 510 | 3 | 318 | 3.37e-102 | 310 |
| MS.gene057683.t1 | AT1G05500 | 27.531 | 563 | 330 | 13 | 11 | 507 | 1 | 551 | 2.27e-57 | 200 |
| MS.gene057683.t1 | AT3G61050 | 28.537 | 417 | 249 | 11 | 1 | 379 | 1 | 406 | 8.83e-46 | 167 |
| MS.gene057683.t1 | AT3G61050 | 28.537 | 417 | 249 | 11 | 1 | 379 | 1 | 406 | 8.83e-46 | 167 |
| MS.gene057683.t1 | AT1G05500 | 26.859 | 417 | 239 | 9 | 147 | 507 | 1 | 407 | 1.69e-36 | 140 |
| MS.gene057683.t1 | AT2G21040 | 62.921 | 89 | 33 | 0 | 377 | 465 | 2 | 90 | 5.08e-34 | 129 |
| MS.gene057683.t1 | AT3G61030 | 26.354 | 277 | 164 | 8 | 71 | 339 | 39 | 283 | 3.02e-14 | 75.5 |
| MS.gene057683.t1 | AT1G48590 | 43.820 | 89 | 45 | 3 | 228 | 316 | 6 | 89 | 1.09e-13 | 69.7 |
| MS.gene057683.t1 | AT1G48590 | 43.820 | 89 | 45 | 3 | 228 | 316 | 6 | 89 | 1.09e-13 | 69.7 |
| MS.gene057683.t1 | AT1G48590 | 43.820 | 89 | 45 | 3 | 228 | 316 | 37 | 120 | 1.46e-13 | 70.1 |
| MS.gene057683.t1 | AT5G47710 | 42.708 | 96 | 50 | 3 | 228 | 323 | 1 | 91 | 3.66e-13 | 68.2 |
| MS.gene057683.t1 | AT5G47710 | 42.708 | 96 | 50 | 3 | 228 | 323 | 1 | 91 | 3.66e-13 | 68.2 |
| MS.gene057683.t1 | AT5G47710 | 42.708 | 96 | 50 | 3 | 228 | 323 | 1 | 91 | 3.66e-13 | 68.2 |
| MS.gene057683.t1 | AT5G47710 | 42.708 | 96 | 50 | 3 | 228 | 323 | 1 | 91 | 3.66e-13 | 68.2 |
| MS.gene057683.t1 | AT3G61300 | 27.509 | 269 | 168 | 10 | 231 | 489 | 247 | 498 | 1.03e-12 | 71.2 |
| MS.gene057683.t1 | AT2G01540 | 38.636 | 88 | 49 | 3 | 229 | 316 | 3 | 85 | 1.30e-11 | 63.9 |
| MS.gene057683.t1 | AT1G70810 | 40.449 | 89 | 48 | 3 | 228 | 316 | 1 | 84 | 1.33e-11 | 63.5 |
| MS.gene057683.t1 | AT3G17980 | 41.176 | 85 | 45 | 3 | 232 | 316 | 17 | 96 | 4.38e-11 | 62.4 |
| MS.gene057683.t1 | AT1G50260 | 22.443 | 352 | 214 | 11 | 69 | 368 | 190 | 534 | 4.41e-11 | 65.9 |
| MS.gene057683.t1 | AT3G19830 | 22.443 | 352 | 214 | 11 | 69 | 368 | 202 | 546 | 4.64e-11 | 65.9 |
| MS.gene057683.t1 | AT3G19830 | 22.443 | 352 | 214 | 11 | 69 | 368 | 202 | 546 | 4.64e-11 | 65.9 |
| MS.gene057683.t1 | AT3G19830 | 22.443 | 352 | 214 | 11 | 69 | 368 | 202 | 546 | 4.64e-11 | 65.9 |
| MS.gene057683.t1 | AT3G19830 | 22.443 | 352 | 214 | 11 | 69 | 368 | 202 | 546 | 4.64e-11 | 65.9 |
| MS.gene057683.t1 | AT1G73580 | 36.029 | 136 | 67 | 6 | 232 | 361 | 8 | 129 | 9.95e-11 | 60.8 |
Find 117 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCATCTCCTCTTCATTTA+AGG | 0.082315 | 4.4:-35203241 | None:intergenic |
| ACCATTGCTGTTAAGGCTTT+TGG | 0.115759 | 4.4:+35179811 | MS.gene057683:CDS |
| TGGAATCTGCTCTTCAATTA+TGG | 0.144763 | 4.4:-35179171 | None:intergenic |
| TTATGGAGCCTTCTATAAAA+TGG | 0.186283 | 4.4:+35179770 | MS.gene057683:CDS |
| CCCATCTCCTCTTCATTTAA+GGG | 0.224515 | 4.4:-35203240 | None:intergenic |
| CCTCAACATCTTGAGCTTCA+TGG | 0.244110 | 4.4:-35203344 | None:intergenic |
| GTTAAAGAAGAAAGATCTTC+TGG | 0.245042 | 4.4:+35202800 | MS.gene057683:CDS |
| GTAAAACGTTTAGGTTCTTC+AGG | 0.276414 | 4.4:-35203132 | None:intergenic |
| ATGGAATGAAGAATTTAATT+TGG | 0.277673 | 4.4:+35202914 | MS.gene057683:CDS |
| GGAATCTGCTCTTCAATTAT+GGG | 0.285493 | 4.4:-35179170 | None:intergenic |
| GACTTTGGGCTAAAGCTTCT+AGG | 0.286163 | 4.4:+35201584 | MS.gene057683:CDS |
| TCCACCAGCTGGAGTGCCTT+CGG | 0.297237 | 4.4:-35203301 | None:intergenic |
| TTAAATTCTTCATTCCATTC+AGG | 0.303352 | 4.4:-35202909 | None:intergenic |
| CAATGTCACCATTGCTGTTA+AGG | 0.306493 | 4.4:+35179804 | MS.gene057683:CDS |
| GTTGTGTTATACCCTAATTT+TGG | 0.307621 | 4.4:+35179834 | MS.gene057683:CDS |
| AGCTGTAAAACCTGGGTCTC+TGG | 0.315296 | 4.4:-35202948 | None:intergenic |
| TATCTAATATTTGAACTTCC+AGG | 0.317043 | 4.4:-35202604 | None:intergenic |
| CTTTCCTTATTAGGAATCAC+TGG | 0.318237 | 4.4:+35205420 | MS.gene057683:intron |
| TCATCGTCTTGGTCCACTAT+TGG | 0.325815 | 4.4:-35178592 | None:intergenic |
| TGCTTCCTGAGATTCCAAAT+TGG | 0.339865 | 4.4:+35178629 | MS.gene057683:CDS |
| AATGGTGACATTGGGATTTC+CGG | 0.341259 | 4.4:-35179794 | None:intergenic |
| GAGGCTCCTCTGCTATAAAT+TGG | 0.349999 | 4.4:-35204398 | None:intergenic |
| CCACCAGCTGGAGTGCCTTC+GGG | 0.353731 | 4.4:-35203300 | None:intergenic |
| GGAGTGCCTTCGGGAGCTTT+AGG | 0.360023 | 4.4:-35203291 | None:intergenic |
| TGATGAGAAGGAGTTGATTA+TGG | 0.372111 | 4.4:+35179753 | MS.gene057683:CDS |
| TGGAACTCATCTTCCCATCT+TGG | 0.380983 | 4.4:-35204378 | None:intergenic |
| TTAATCCAATTTGGAATCTC+AGG | 0.390421 | 4.4:-35178634 | None:intergenic |
| AGGTCCAGAGTAAAACGTTT+AGG | 0.391498 | 4.4:-35203141 | None:intergenic |
| TGGTGTCTACAGGATTGTTC+AGG | 0.391879 | 4.4:+35201628 | MS.gene057683:CDS |
| ATCAACAAACCTTGAAAAGT+TGG | 0.399135 | 4.4:-35179248 | None:intergenic |
| GCTGATCTTATGTCTATTCC+TGG | 0.399296 | 4.4:+35201608 | MS.gene057683:CDS |
| TTTGGTGTTGGAATTTCAAT+TGG | 0.403525 | 4.4:+35178403 | MS.gene057683:CDS |
| ACTTTGGGCTAAAGCTTCTA+GGG | 0.405305 | 4.4:+35201585 | MS.gene057683:CDS |
| CTCCACATGTAGTTTATCAT+TGG | 0.409415 | 4.4:-35204424 | None:intergenic |
| GGAAGTTCAAATATTAGATA+TGG | 0.410316 | 4.4:+35202607 | MS.gene057683:CDS |
| TGTCTATTCCTGGTGTCTAC+AGG | 0.425149 | 4.4:+35201618 | MS.gene057683:CDS |
| CCAGGAGCTTATCAAAGATC+AGG | 0.425584 | 4.4:+35202553 | MS.gene057683:intron |
| GTGCAGCCACATGTTGACTT+TGG | 0.426065 | 4.4:+35201569 | MS.gene057683:intron |
| ATTTCAATTGGTCTCGTTGT+TGG | 0.427047 | 4.4:+35178415 | MS.gene057683:CDS |
| TCAACAAACCTTGAAAAGTT+GGG | 0.435324 | 4.4:-35179247 | None:intergenic |
| TTTGCAAAGTTTCATCGTCT+TGG | 0.441142 | 4.4:-35178603 | None:intergenic |
| TACAGCTCAATGTTTATGAC+TGG | 0.443325 | 4.4:+35202964 | MS.gene057683:CDS |
| TATGTGGCCTTATCTTGATA+AGG | 0.443807 | 4.4:+35178999 | MS.gene057683:CDS |
| TCCTAAAATTACGCCAATAG+TGG | 0.445532 | 4.4:+35178579 | MS.gene057683:CDS |
| TGCAGCCACATGTTGACTTT+GGG | 0.447473 | 4.4:+35201570 | MS.gene057683:intron |
| TTCTCCACTGCAACTCTACC+TGG | 0.452380 | 4.4:-35205531 | None:intergenic |
| TTTACATGTAAAATTCCAAC+GGG | 0.457448 | 4.4:-35202759 | None:intergenic |
| GAGTTTCAGACGCTCACTCT+CGG | 0.463988 | 4.4:+35179215 | MS.gene057683:CDS |
| TAATTTACCCTATCAAAGTC+AGG | 0.465817 | 4.4:-35178661 | None:intergenic |
| ACCCTTAAATGAAGAGGAGA+TGG | 0.469354 | 4.4:+35203239 | MS.gene057683:CDS |
| CTTAACAGCAATGGTGACAT+TGG | 0.477398 | 4.4:-35179803 | None:intergenic |
| GGTTGGGAAGCATGACAAGA+TGG | 0.484765 | 4.4:+35203077 | MS.gene057683:intron |
| TTAACAGCAATGGTGACATT+GGG | 0.487468 | 4.4:-35179802 | None:intergenic |
| TATGGAGCCTTCTATAAAAT+GGG | 0.488425 | 4.4:+35179771 | MS.gene057683:CDS |
| CATCTTATAGATTCTAAGAA+TGG | 0.489619 | 4.4:+35205502 | MS.gene057683:CDS |
| AGTTTCAGACGCTCACTCTC+GGG | 0.489815 | 4.4:+35179216 | MS.gene057683:CDS |
| CAACATACCTTATCAAGATA+AGG | 0.492149 | 4.4:-35179006 | None:intergenic |
| GGTTATGTCGACATCAATCT+CGG | 0.493324 | 4.4:+35205442 | MS.gene057683:CDS |
| TTAAAGAAGAAAGATCTTCT+GGG | 0.496144 | 4.4:+35202801 | MS.gene057683:CDS |
| GCTGTAAAACCTGGGTCTCT+GGG | 0.497195 | 4.4:-35202947 | None:intergenic |
| ACAAGTTTATAGAACTTATG+TGG | 0.506312 | 4.4:+35178983 | MS.gene057683:CDS |
| AAACATTGAGCTGTAAAACC+TGG | 0.513710 | 4.4:-35202956 | None:intergenic |
| AAAAGAACAGAGATCCAAGA+TGG | 0.515166 | 4.4:+35204364 | MS.gene057683:CDS |
| TAAAACGTTTAGGTTCTTCA+GGG | 0.516910 | 4.4:-35203131 | None:intergenic |
| GTAAGCTTTAGTTTCACGTA+AGG | 0.517833 | 4.4:-35202834 | None:intergenic |
| ACAAGTTGACCTCCACCAGC+TGG | 0.524770 | 4.4:-35203312 | None:intergenic |
| TTCTAAGAATGGTCGCATCC+AGG | 0.534118 | 4.4:+35205513 | MS.gene057683:CDS |
| GCTCCCGAAGGCACTCCAGC+TGG | 0.535017 | 4.4:+35203297 | MS.gene057683:CDS |
| GTTATGTCGACATCAATCTC+GGG | 0.535331 | 4.4:+35205443 | MS.gene057683:CDS |
| ACAAGAACTTAAATCCTGAA+TGG | 0.542041 | 4.4:+35202895 | MS.gene057683:CDS |
| CCCGAAGGCACTCCAGCTGG+TGG | 0.542115 | 4.4:+35203300 | MS.gene057683:CDS |
| CATGAAGCTCAAGATGTTGA+GGG | 0.543113 | 4.4:+35203345 | MS.gene057683:CDS |
| CCATGAAGCTCAAGATGTTG+AGG | 0.550519 | 4.4:+35203344 | MS.gene057683:CDS |
| ACAGCTCAATGTTTATGACT+GGG | 0.553354 | 4.4:+35202965 | MS.gene057683:CDS |
| CTTTCAACCTACAGATGTTG+AGG | 0.558020 | 4.4:+35178456 | MS.gene057683:CDS |
| TGAGTTCCAATTTATAGCAG+AGG | 0.560485 | 4.4:+35204392 | MS.gene057683:CDS |
| TTTCCTTATTAGGAATCACT+GGG | 0.560765 | 4.4:+35205421 | MS.gene057683:intron |
| CAACAAACCTTGAAAAGTTG+GGG | 0.565270 | 4.4:-35179246 | None:intergenic |
| GAAGGCACTCCAGCTGGTGG+AGG | 0.565743 | 4.4:+35203303 | MS.gene057683:CDS |
| CTTTACATGTAAAATTCCAA+CGG | 0.567784 | 4.4:-35202760 | None:intergenic |
| TACCAATGATAAACTACATG+TGG | 0.571745 | 4.4:+35204422 | MS.gene057683:CDS |
| CTGAAAATAAGACGTGCTTG+TGG | 0.573459 | 4.4:-35203384 | None:intergenic |
| TTATAAACCCTTAAATGAAG+AGG | 0.574026 | 4.4:+35203233 | MS.gene057683:CDS |
| GAGCCTTCTATAAAATGGGC+CGG | 0.574886 | 4.4:+35179775 | MS.gene057683:CDS |
| CCCTTAAATGAAGAGGAGAT+GGG | 0.578046 | 4.4:+35203240 | MS.gene057683:CDS |
| CAATGTTTATGACTGGGAGC+AGG | 0.580843 | 4.4:+35202971 | MS.gene057683:CDS |
| ACGAACCTTGCTTCATCAGA+AGG | 0.580909 | 4.4:+35204464 | MS.gene057683:CDS |
| ATGATTACCTCAACATCTGT+AGG | 0.580981 | 4.4:-35178463 | None:intergenic |
| CATTCTTAGAATCTATAAGA+TGG | 0.583722 | 4.4:-35205501 | None:intergenic |
| TTGGGAATCTTAGAGCTATG+AGG | 0.585506 | 4.4:+35202733 | MS.gene057683:intron |
| CTTTGGGCTAAAGCTTCTAG+GGG | 0.586412 | 4.4:+35201586 | MS.gene057683:CDS |
| GTTGGGAAGCATGACAAGAT+GGG | 0.586514 | 4.4:+35203078 | MS.gene057683:CDS |
| AAGTACCTTCTGATGAAGCA+AGG | 0.591243 | 4.4:-35204469 | None:intergenic |
| CCCAAAAGCCTTAACAGCAA+TGG | 0.592781 | 4.4:-35179812 | None:intergenic |
| AACATTGAGCTGTAAAACCT+GGG | 0.596132 | 4.4:-35202955 | None:intergenic |
| AAATGAAGAGGAGATGGGCA+AGG | 0.600205 | 4.4:+35203245 | MS.gene057683:CDS |
| AGTCAAAGACCCAGAGACCC+AGG | 0.601172 | 4.4:+35202938 | MS.gene057683:CDS |
| AATGAAGAGGAGATGGGCAA+GGG | 0.610144 | 4.4:+35203246 | MS.gene057683:CDS |
| ACATGTAGTTTATCATTGGT+AGG | 0.611492 | 4.4:-35204420 | None:intergenic |
| TGTAGTTTATCATTGGTAGG+AGG | 0.614487 | 4.4:-35204417 | None:intergenic |
| AAAACGTTTAGGTTCTTCAG+GGG | 0.616500 | 4.4:-35203130 | None:intergenic |
| CAATGATAAACTACATGTGG+AGG | 0.618426 | 4.4:+35204425 | MS.gene057683:CDS |
| GCATCCAGGTAGAGTTGCAG+TGG | 0.621739 | 4.4:+35205527 | MS.gene057683:CDS |
| AGTTTATGTGACTGATGAGA+AGG | 0.622742 | 4.4:+35179741 | MS.gene057683:CDS |
| AAAGAACAGAGATCCAAGAT+GGG | 0.625196 | 4.4:+35204365 | MS.gene057683:CDS |
| ATCGCGAGGACAGATTGTTG+TGG | 0.631945 | 4.4:+35203203 | MS.gene057683:CDS |
| AGAGCTATGAGGAGACCCGT+TGG | 0.633398 | 4.4:+35202744 | MS.gene057683:intron |
| CTGATGAAGCAAGGTTCGTG+AGG | 0.636887 | 4.4:-35204460 | None:intergenic |
| AGGTTGCAAACATGTATCTG+TGG | 0.648677 | 4.4:+35202573 | MS.gene057683:CDS |
| TGAACAATCCTGTAGACACC+AGG | 0.661769 | 4.4:-35201626 | None:intergenic |
| ATGAAGCTCAAGATGTTGAG+GGG | 0.672133 | 4.4:+35203346 | MS.gene057683:CDS |
| TTTAGCCCAAAGTCAACATG+TGG | 0.676209 | 4.4:-35201575 | None:intergenic |
| TTATGTCGACATCAATCTCG+GGG | 0.683350 | 4.4:+35205444 | MS.gene057683:CDS |
| GCTCAAAATGAGAAATCGCG+AGG | 0.690879 | 4.4:+35203189 | MS.gene057683:CDS |
| AACAAACCTTGAAAAGTTGG+GGG | 0.698689 | 4.4:-35179245 | None:intergenic |
| ACAATTCCTAAAGCTCCCGA+AGG | 0.699450 | 4.4:+35203285 | MS.gene057683:CDS |
| TGACAAGATGGGTATGAATG+TGG | 0.727753 | 4.4:+35203089 | MS.gene057683:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 35178367 | 35205561 | 35178367 | ID=MS.gene057683 |
| chr4.4 | mRNA | 35178367 | 35205561 | 35178367 | ID=MS.gene057683.t1;Parent=MS.gene057683 |
| chr4.4 | exon | 35178367 | 35178477 | 35178367 | ID=MS.gene057683.t1.exon1;Parent=MS.gene057683.t1 |
| chr4.4 | CDS | 35178367 | 35178477 | 35178367 | ID=cds.MS.gene057683.t1;Parent=MS.gene057683.t1 |
| chr4.4 | exon | 35178577 | 35178675 | 35178577 | ID=MS.gene057683.t1.exon2;Parent=MS.gene057683.t1 |
| chr4.4 | CDS | 35178577 | 35178675 | 35178577 | ID=cds.MS.gene057683.t1;Parent=MS.gene057683.t1 |
| chr4.4 | exon | 35178970 | 35179020 | 35178970 | ID=MS.gene057683.t1.exon3;Parent=MS.gene057683.t1 |
| chr4.4 | CDS | 35178970 | 35179020 | 35178970 | ID=cds.MS.gene057683.t1;Parent=MS.gene057683.t1 |
| chr4.4 | exon | 35179137 | 35179264 | 35179137 | ID=MS.gene057683.t1.exon4;Parent=MS.gene057683.t1 |
| chr4.4 | CDS | 35179137 | 35179264 | 35179137 | ID=cds.MS.gene057683.t1;Parent=MS.gene057683.t1 |
| chr4.4 | exon | 35179735 | 35179870 | 35179735 | ID=MS.gene057683.t1.exon5;Parent=MS.gene057683.t1 |
| chr4.4 | CDS | 35179735 | 35179870 | 35179735 | ID=cds.MS.gene057683.t1;Parent=MS.gene057683.t1 |
| chr4.4 | exon | 35201575 | 35201649 | 35201575 | ID=MS.gene057683.t1.exon6;Parent=MS.gene057683.t1 |
| chr4.4 | CDS | 35201575 | 35201649 | 35201575 | ID=cds.MS.gene057683.t1;Parent=MS.gene057683.t1 |
| chr4.4 | exon | 35202557 | 35202633 | 35202557 | ID=MS.gene057683.t1.exon7;Parent=MS.gene057683.t1 |
| chr4.4 | CDS | 35202557 | 35202633 | 35202557 | ID=cds.MS.gene057683.t1;Parent=MS.gene057683.t1 |
| chr4.4 | exon | 35202746 | 35202992 | 35202746 | ID=MS.gene057683.t1.exon8;Parent=MS.gene057683.t1 |
| chr4.4 | CDS | 35202746 | 35202992 | 35202746 | ID=cds.MS.gene057683.t1;Parent=MS.gene057683.t1 |
| chr4.4 | exon | 35203078 | 35203428 | 35203078 | ID=MS.gene057683.t1.exon9;Parent=MS.gene057683.t1 |
| chr4.4 | CDS | 35203078 | 35203428 | 35203078 | ID=cds.MS.gene057683.t1;Parent=MS.gene057683.t1 |
| chr4.4 | exon | 35204357 | 35204485 | 35204357 | ID=MS.gene057683.t1.exon10;Parent=MS.gene057683.t1 |
| chr4.4 | CDS | 35204357 | 35204485 | 35204357 | ID=cds.MS.gene057683.t1;Parent=MS.gene057683.t1 |
| chr4.4 | exon | 35205433 | 35205561 | 35205433 | ID=MS.gene057683.t1.exon11;Parent=MS.gene057683.t1 |
| chr4.4 | CDS | 35205433 | 35205561 | 35205433 | ID=cds.MS.gene057683.t1;Parent=MS.gene057683.t1 |
| Gene Sequence |
| Protein sequence |
