Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32853.t1 | XP_013461819.1 | 98.6 | 703 | 4 | 3 | 1 | 702 | 1 | 698 | 0.00E+00 | 1343.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32853.t1 | Q9ZQB9 | 78.0 | 713 | 132 | 8 | 1 | 702 | 1 | 699 | 1.4e-312 | 1072.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32853.t1 | A0A072V1K1 | 98.6 | 703 | 4 | 3 | 1 | 702 | 1 | 698 | 0.0e+00 | 1343.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049227 | MS.gene32853 | 0.803192 | 3.92E-49 | -1.69E-46 |
| MS.gene049243 | MS.gene32853 | 0.801105 | 1.05E-48 | -1.69E-46 |
| MS.gene049418 | MS.gene32853 | 0.812842 | 3.46E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene32853 | 0.803595 | 3.23E-49 | -1.69E-46 |
| MS.gene050009 | MS.gene32853 | 0.806021 | 1.01E-49 | -1.69E-46 |
| MS.gene050297 | MS.gene32853 | 0.823531 | 1.32E-53 | -1.69E-46 |
| MS.gene050894 | MS.gene32853 | 0.813488 | 2.50E-51 | -1.69E-46 |
| MS.gene051067 | MS.gene32853 | 0.847887 | 8.70E-60 | -1.69E-46 |
| MS.gene051885 | MS.gene32853 | 0.816811 | 4.56E-52 | -1.69E-46 |
| MS.gene052732 | MS.gene32853 | 0.837499 | 5.01E-57 | -1.69E-46 |
| MS.gene053143 | MS.gene32853 | 0.829269 | 5.66E-55 | -1.69E-46 |
| MS.gene053144 | MS.gene32853 | 0.855657 | 5.44E-62 | -1.69E-46 |
| MS.gene053171 | MS.gene32853 | 0.820489 | 6.68E-53 | -1.69E-46 |
| MS.gene053536 | MS.gene32853 | 0.81034 | 1.21E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene32853 | 0.806962 | 6.38E-50 | -1.69E-46 |
| MS.gene054554 | MS.gene32853 | 0.817982 | 2.49E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene32853 | 0.851887 | 6.62E-61 | -1.69E-46 |
| MS.gene054585 | MS.gene32853 | 0.833593 | 4.88E-56 | -1.69E-46 |
| MS.gene054824 | MS.gene32853 | 0.80012 | 1.67E-48 | -1.69E-46 |
| MS.gene055331 | MS.gene32853 | 0.810237 | 1.27E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene32853 | 0.815751 | 7.87E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene32853 | 0.82237 | 2.46E-53 | -1.69E-46 |
| MS.gene055764 | MS.gene32853 | 0.826233 | 3.03E-54 | -1.69E-46 |
| MS.gene056266 | MS.gene32853 | -0.802546 | 5.33E-49 | -1.69E-46 |
| MS.gene056398 | MS.gene32853 | 0.838915 | 2.17E-57 | -1.69E-46 |
| MS.gene057683 | MS.gene32853 | 0.806502 | 7.97E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene32853 | 0.80985 | 1.54E-50 | -1.69E-46 |
| MS.gene058720 | MS.gene32853 | 0.815134 | 1.08E-51 | -1.69E-46 |
| MS.gene059424 | MS.gene32853 | 0.816172 | 6.34E-52 | -1.69E-46 |
| MS.gene059778 | MS.gene32853 | 0.803603 | 3.22E-49 | -1.69E-46 |
| MS.gene060359 | MS.gene32853 | 0.821758 | 3.40E-53 | -1.69E-46 |
| MS.gene06057 | MS.gene32853 | 0.808465 | 3.06E-50 | -1.69E-46 |
| MS.gene060855 | MS.gene32853 | 0.813318 | 2.72E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073023 | MS.gene32853 | PPI |
| MS.gene40373 | MS.gene32853 | PPI |
| MS.gene32853 | MS.gene022823 | PPI |
| MS.gene32853 | MS.gene014716 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32853.t1 | MTR_3g103500 | 98.578 | 703 | 4 | 3 | 1 | 702 | 1 | 698 | 0.0 | 1415 |
| MS.gene32853.t1 | MTR_3g103500 | 97.581 | 496 | 7 | 2 | 1 | 496 | 1 | 491 | 0.0 | 1002 |
| MS.gene32853.t1 | MTR_3g109040 | 64.665 | 716 | 210 | 11 | 1 | 702 | 1 | 687 | 0.0 | 907 |
| MS.gene32853.t1 | MTR_3g109040 | 65.199 | 704 | 205 | 10 | 10 | 702 | 2 | 676 | 0.0 | 904 |
| MS.gene32853.t1 | MTR_4g006010 | 63.194 | 720 | 226 | 7 | 1 | 702 | 1 | 699 | 0.0 | 884 |
| MS.gene32853.t1 | MTR_6g007807 | 66.413 | 658 | 185 | 8 | 53 | 701 | 35 | 665 | 0.0 | 849 |
| MS.gene32853.t1 | MTR_8g012320 | 66.516 | 663 | 191 | 7 | 46 | 701 | 63 | 701 | 0.0 | 838 |
| MS.gene32853.t1 | MTR_1g061510 | 42.125 | 527 | 273 | 5 | 176 | 698 | 19 | 517 | 1.77e-147 | 440 |
| MS.gene32853.t1 | MTR_1g061340 | 40.987 | 527 | 279 | 5 | 176 | 698 | 19 | 517 | 4.72e-146 | 436 |
| MS.gene32853.t1 | MTR_1g061270 | 41.445 | 526 | 277 | 3 | 176 | 698 | 19 | 516 | 2.35e-145 | 434 |
| MS.gene32853.t1 | MTR_1g061280 | 40.490 | 531 | 284 | 5 | 176 | 702 | 19 | 521 | 4.06e-144 | 431 |
| MS.gene32853.t1 | MTR_1g492700 | 45.513 | 468 | 226 | 4 | 232 | 698 | 85 | 524 | 5.37e-144 | 431 |
| MS.gene32853.t1 | MTR_7g103590 | 41.556 | 527 | 276 | 5 | 176 | 698 | 28 | 526 | 7.67e-144 | 431 |
| MS.gene32853.t1 | MTR_4g055520 | 41.746 | 527 | 280 | 7 | 185 | 701 | 33 | 542 | 6.75e-139 | 418 |
| MS.gene32853.t1 | MTR_7g101950 | 40.377 | 530 | 285 | 6 | 176 | 701 | 25 | 527 | 5.93e-138 | 416 |
| MS.gene32853.t1 | MTR_4g055520 | 46.512 | 430 | 217 | 4 | 185 | 604 | 33 | 459 | 4.17e-135 | 407 |
| MS.gene32853.t1 | MTR_4g055520 | 43.304 | 448 | 239 | 4 | 255 | 701 | 29 | 462 | 4.16e-130 | 393 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32853.t1 | AT4G07960 | 76.999 | 713 | 139 | 8 | 1 | 702 | 1 | 699 | 0.0 | 1071 |
| MS.gene32853.t1 | AT4G07960 | 76.999 | 713 | 139 | 8 | 1 | 702 | 1 | 699 | 0.0 | 1071 |
| MS.gene32853.t1 | AT4G31590 | 65.546 | 714 | 212 | 8 | 1 | 702 | 1 | 692 | 0.0 | 927 |
| MS.gene32853.t1 | AT2G24630 | 63.675 | 713 | 225 | 7 | 1 | 702 | 1 | 690 | 0.0 | 907 |
| MS.gene32853.t1 | AT2G24630 | 63.675 | 713 | 225 | 7 | 1 | 702 | 1 | 690 | 0.0 | 907 |
| MS.gene32853.t1 | AT3G28180 | 63.869 | 703 | 201 | 11 | 18 | 702 | 6 | 673 | 0.0 | 861 |
| MS.gene32853.t1 | AT3G07330 | 64.253 | 663 | 198 | 7 | 51 | 702 | 48 | 682 | 0.0 | 845 |
| MS.gene32853.t1 | AT3G07330 | 64.253 | 663 | 198 | 7 | 51 | 702 | 48 | 682 | 0.0 | 845 |
| MS.gene32853.t1 | AT5G22740 | 41.431 | 531 | 279 | 5 | 176 | 701 | 29 | 532 | 6.16e-143 | 429 |
| MS.gene32853.t1 | AT5G03760 | 40.755 | 530 | 276 | 5 | 179 | 701 | 32 | 530 | 1.40e-139 | 420 |
| MS.gene32853.t1 | AT1G23480 | 40.678 | 531 | 282 | 5 | 176 | 701 | 51 | 553 | 6.63e-139 | 419 |
| MS.gene32853.t1 | AT1G23480 | 40.678 | 531 | 282 | 5 | 176 | 701 | 51 | 553 | 6.63e-139 | 419 |
| MS.gene32853.t1 | AT2G35650 | 41.199 | 517 | 269 | 5 | 176 | 688 | 51 | 536 | 5.59e-138 | 417 |
| MS.gene32853.t1 | AT5G16190 | 40.987 | 527 | 278 | 6 | 176 | 698 | 6 | 503 | 7.53e-137 | 412 |
| MS.gene32853.t1 | AT4G13410 | 44.444 | 459 | 245 | 5 | 176 | 630 | 43 | 495 | 1.82e-136 | 412 |
| MS.gene32853.t1 | AT1G23480 | 41.223 | 507 | 265 | 5 | 200 | 701 | 3 | 481 | 2.69e-135 | 407 |
| MS.gene32853.t1 | AT5G16190 | 45.638 | 447 | 238 | 4 | 176 | 618 | 6 | 451 | 6.82e-135 | 405 |
| MS.gene32853.t1 | AT5G16190 | 43.376 | 468 | 235 | 4 | 232 | 698 | 4 | 442 | 3.13e-134 | 403 |
| MS.gene32853.t1 | AT1G24070 | 38.621 | 580 | 319 | 8 | 125 | 698 | 3 | 551 | 4.41e-134 | 406 |
| MS.gene32853.t1 | AT2G35650 | 43.668 | 458 | 226 | 4 | 232 | 688 | 38 | 464 | 9.73e-134 | 403 |
| MS.gene32853.t1 | AT2G35650 | 43.668 | 458 | 226 | 4 | 232 | 688 | 38 | 464 | 9.73e-134 | 403 |
| MS.gene32853.t1 | AT3G56000 | 40.377 | 530 | 279 | 6 | 180 | 701 | 26 | 526 | 9.27e-131 | 397 |
| MS.gene32853.t1 | AT5G16190 | 38.571 | 560 | 278 | 7 | 176 | 698 | 6 | 536 | 1.08e-129 | 394 |
| MS.gene32853.t1 | AT4G16590 | 37.879 | 528 | 259 | 8 | 176 | 698 | 56 | 519 | 2.38e-117 | 362 |
| MS.gene32853.t1 | AT1G23480 | 41.205 | 415 | 216 | 2 | 288 | 701 | 21 | 408 | 2.53e-112 | 345 |
| MS.gene32853.t1 | AT4G13410 | 47.633 | 338 | 171 | 2 | 294 | 630 | 2 | 334 | 6.12e-110 | 338 |
| MS.gene32853.t1 | AT2G35650 | 41.337 | 404 | 206 | 3 | 286 | 688 | 5 | 378 | 2.79e-108 | 334 |
| MS.gene32853.t1 | AT4G13410 | 47.516 | 322 | 165 | 3 | 176 | 494 | 43 | 363 | 7.42e-99 | 310 |
| MS.gene32853.t1 | AT1G24070 | 42.373 | 413 | 219 | 6 | 125 | 532 | 3 | 401 | 2.07e-98 | 309 |
Find 150 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATCAAAGATTGTGTAAT+TGG | 0.164344 | 3.1:+81925199 | None:intergenic |
| CAGCAGCTCTATGAGCTTTA+AGG | 0.164902 | 3.1:+81925957 | None:intergenic |
| AGTTCATCAATGTCCCAATT+TGG | 0.224089 | 3.1:+81926085 | None:intergenic |
| TATTGCAGCAGTGTGTAATT+TGG | 0.228223 | 3.1:-81925272 | MS.gene32853:CDS |
| AATTACACAATCTTTGATTA+AGG | 0.236300 | 3.1:-81925197 | MS.gene32853:CDS |
| CTGTAAGCTTCGTAAGATTC+AGG | 0.244033 | 3.1:+81924385 | None:intergenic |
| GATAGATTGGTTCTTTGTTT+AGG | 0.261285 | 3.1:-81925545 | MS.gene32853:CDS |
| CAAATTGCTCCTGCATTGTT+TGG | 0.262621 | 3.1:-81925923 | MS.gene32853:CDS |
| AAATGGCACCTTTGTTCAAT+TGG | 0.282770 | 3.1:-81926159 | MS.gene32853:CDS |
| CTTGTTGTTCCACTTCAAAA+TGG | 0.290451 | 3.1:+81924692 | None:intergenic |
| GGGCACCGACATTTGGTGTT+AGG | 0.298422 | 3.1:-81925682 | MS.gene32853:CDS |
| GTCAAACGCCGCGTCGCTTC+TGG | 0.301307 | 3.1:-81925887 | MS.gene32853:CDS |
| TTGGTTGGTCTAGACTTAAT+TGG | 0.308940 | 3.1:-81923285 | MS.gene32853:CDS |
| CATTGAACCCAAAGAAATTA+AGG | 0.311415 | 3.1:+81924656 | None:intergenic |
| TCTGAAACATCACCACCTTT+TGG | 0.311924 | 3.1:+81925485 | None:intergenic |
| CTACAGGATAATGACGAATT+AGG | 0.322967 | 3.1:-81924793 | MS.gene32853:intron |
| CTTAATTTCTTTGGGTTCAA+TGG | 0.325307 | 3.1:-81924655 | MS.gene32853:CDS |
| ACTATGAAAGGAAAAGCTTT+TGG | 0.326733 | 3.1:+81923684 | None:intergenic |
| GCTGTTCGAGCTCATCTTCA+TGG | 0.327528 | 3.1:-81924550 | MS.gene32853:CDS |
| TTTCACATAGCTACAATTCA+TGG | 0.336791 | 3.1:+81925081 | None:intergenic |
| GAGGACCACTGTGGAGGATA+TGG | 0.337343 | 3.1:-81924578 | MS.gene32853:CDS |
| GATGACCCTCGTTGATGCTT+TGG | 0.351008 | 3.1:+81923510 | None:intergenic |
| AATAGAGTGAACGAGTAAAA+TGG | 0.354129 | 3.1:+81923813 | None:intergenic |
| AATGGCACCTTTGTTCAATT+GGG | 0.361924 | 3.1:-81926158 | MS.gene32853:CDS |
| CCGACATGGTGTTCTCAAAT+AGG | 0.365826 | 3.1:+81923652 | None:intergenic |
| TTGTTTGCCTGATGTCATAA+AGG | 0.368029 | 3.1:-81924314 | MS.gene32853:CDS |
| TCTTTCATTTCTTCCAGATC+AGG | 0.374102 | 3.1:+81923483 | None:intergenic |
| TATTCAGAGTATAGATAGAT+TGG | 0.375619 | 3.1:-81925558 | MS.gene32853:CDS |
| TTTGGGTTCAATGGTACTGC+TGG | 0.378978 | 3.1:-81924646 | MS.gene32853:CDS |
| CAGCAGCATAGATGGCATTC+TGG | 0.380899 | 3.1:-81924358 | MS.gene32853:CDS |
| GATGTTTCAGATCTTGAATC+TGG | 0.386991 | 3.1:-81925473 | MS.gene32853:CDS |
| GATCTTGAATCTGGAGATAA+GGG | 0.389985 | 3.1:-81925464 | MS.gene32853:CDS |
| TTAAGGACGAGGTTCATAAA+TGG | 0.393056 | 3.1:-81925180 | MS.gene32853:CDS |
| GTATTTGAAGGAACTTGCTT+TGG | 0.396618 | 3.1:-81923400 | MS.gene32853:CDS |
| AAGAAATGAAAGAGGAAATC+AGG | 0.399107 | 3.1:-81923473 | MS.gene32853:CDS |
| TCAATGGTACTGCTGGAGTT+TGG | 0.399721 | 3.1:-81924639 | MS.gene32853:CDS |
| AGGGTCATCAGCACCTGATC+TGG | 0.403205 | 3.1:-81923496 | MS.gene32853:CDS |
| ACCTTGGCCTTTATGACATC+AGG | 0.403380 | 3.1:+81924307 | None:intergenic |
| ACAGAAAACAGCAGCATAGA+TGG | 0.412430 | 3.1:-81924366 | MS.gene32853:CDS |
| TGCTCCACATCTTGAATTGT+GGG | 0.424265 | 3.1:-81925702 | MS.gene32853:CDS |
| GAATTGTGGGCACCGACATT+TGG | 0.427447 | 3.1:-81925689 | MS.gene32853:CDS |
| TGCTGGAGTTTGGAGAATAA+AGG | 0.431597 | 3.1:-81924629 | MS.gene32853:CDS |
| ACGCACTTCCTAGCTGGAAT+AGG | 0.438031 | 3.1:+81923601 | None:intergenic |
| TAATCAAAGATTGTGTAATT+GGG | 0.439751 | 3.1:+81925200 | None:intergenic |
| AGATAAGGGTTTCTTCCCTA+TGG | 0.441243 | 3.1:-81925450 | MS.gene32853:CDS |
| AGATCTTGAATCTGGAGATA+AGG | 0.445844 | 3.1:-81925465 | MS.gene32853:CDS |
| CTTTCTTGCAGATAAGCATA+TGG | 0.446258 | 3.1:-81923887 | MS.gene32853:intron |
| CAAGGTGTTTCTATGTTTGT+CGG | 0.458917 | 3.1:-81925777 | MS.gene32853:CDS |
| AGTTTGGAGAATAAAGGCTT+TGG | 0.460085 | 3.1:-81924623 | MS.gene32853:CDS |
| AAATTCAATGCTATGATCTC+AGG | 0.461079 | 3.1:-81923624 | MS.gene32853:CDS |
| CTTAAAGCTCATAGAGCTGC+TGG | 0.464353 | 3.1:-81925956 | MS.gene32853:CDS |
| ATCAGGAGTAGGCTGAAAAT+CGG | 0.466152 | 3.1:+81925030 | None:intergenic |
| TCTTCAAGAGACAAAGGAAA+AGG | 0.476352 | 3.1:-81926013 | MS.gene32853:CDS |
| GGCACCGACATTTGGTGTTA+GGG | 0.481814 | 3.1:-81925681 | MS.gene32853:CDS |
| ATTCGTACGCACTTCCTAGC+TGG | 0.482898 | 3.1:+81923595 | None:intergenic |
| TGGGACATTGATGAACTTGA+AGG | 0.483005 | 3.1:-81926079 | MS.gene32853:CDS |
| AACAACCCACGCAGGAATCT+CGG | 0.484233 | 3.1:+81923752 | None:intergenic |
| GTGCTCCACATCTTGAATTG+TGG | 0.487800 | 3.1:-81925703 | MS.gene32853:CDS |
| AGCTAGGAAGTGCGTACGAA+TGG | 0.488925 | 3.1:-81923593 | MS.gene32853:CDS |
| AGAAGCGACGCGGCGTTTGA+CGG | 0.489772 | 3.1:+81925889 | None:intergenic |
| AAAATTAAACCTGTTCCAAA+AGG | 0.496075 | 3.1:-81925500 | MS.gene32853:CDS |
| TTCTACTTCTTGCTATTCCA+AGG | 0.497931 | 3.1:-81923321 | MS.gene32853:CDS |
| CGGTGGTGTTGGTGGTGGTA+GGG | 0.498109 | 3.1:-81925843 | MS.gene32853:CDS |
| TAAGAAGTCCGGTCGTTCAT+CGG | 0.499552 | 3.1:-81923562 | MS.gene32853:CDS |
| TTTAGTAGTACCTTAAAATG+AGG | 0.500382 | 3.1:+81924989 | None:intergenic |
| TAGGACTTGTGCAAGCTAGA+TGG | 0.503401 | 3.1:-81924774 | MS.gene32853:CDS |
| CCCCATGTGCAATGAGAAAG+AGG | 0.505230 | 3.1:-81925414 | MS.gene32853:intron |
| CACGCAGGAATCTCGGCCTC+CGG | 0.505996 | 3.1:+81923759 | None:intergenic |
| ATTAGAGATGGGTACAAAGC+TGG | 0.509776 | 3.1:-81925118 | MS.gene32853:CDS |
| ATCGACGGTGGTGTTGGTGG+TGG | 0.510363 | 3.1:-81925848 | MS.gene32853:CDS |
| AAAAGTAAATCTTCTTCTGA+AGG | 0.511562 | 3.1:+81926055 | None:intergenic |
| ACATAACAAAATGTATTTGA+AGG | 0.516862 | 3.1:-81923412 | MS.gene32853:CDS |
| GCGGATATCGACGGTGGTGT+TGG | 0.521978 | 3.1:-81925854 | MS.gene32853:CDS |
| TTGAGAAATGACATGACTGC+TGG | 0.523060 | 3.1:+81923720 | None:intergenic |
| ATCACCCTCCGATGAACGAC+CGG | 0.523064 | 3.1:+81923554 | None:intergenic |
| ACGGTGGTGTTGGTGGTGGT+AGG | 0.524657 | 3.1:-81925844 | MS.gene32853:CDS |
| CAGCAGTGTGTAATTTGGAT+TGG | 0.524727 | 3.1:-81925267 | MS.gene32853:CDS |
| GGGATCTGAACAAGAACCAT+AGG | 0.528282 | 3.1:+81925434 | None:intergenic |
| GCAACACCAACTTTCTAAGA+AGG | 0.529828 | 3.1:+81923835 | None:intergenic |
| CCTCTTTCTCATTGCACATG+GGG | 0.530589 | 3.1:+81925414 | None:intergenic |
| CGACACCGTGTGATTAGAGA+TGG | 0.531408 | 3.1:-81925130 | MS.gene32853:CDS |
| GTTCATAAATGGCAAGAAGA+AGG | 0.534334 | 3.1:-81925169 | MS.gene32853:CDS |
| ACCTCTTTCTCATTGCACAT+GGG | 0.534788 | 3.1:+81925413 | None:intergenic |
| TTCGAGCTCATCTTCATGGA+TGG | 0.538595 | 3.1:-81924546 | MS.gene32853:CDS |
| CAAAGGCGAAACAATTGCAT+TGG | 0.541740 | 3.1:+81924334 | None:intergenic |
| AGAACCCTACAGTGAAAAGT+AGG | 0.543807 | 3.1:-81925814 | MS.gene32853:CDS |
| AGGAGATACGGTACTATGAA+AGG | 0.544564 | 3.1:+81923672 | None:intergenic |
| AAGCTGGTGGTTGGTTGGAG+AGG | 0.544703 | 3.1:-81924597 | MS.gene32853:CDS |
| AGGAGTCTACTTTCAGCTCA+AGG | 0.545457 | 3.1:-81923351 | MS.gene32853:CDS |
| GCTAGGAAGTGCGTACGAAT+GGG | 0.547002 | 3.1:-81923592 | MS.gene32853:CDS |
| TACCTCTTTCTCATTGCACA+TGG | 0.547325 | 3.1:+81925412 | None:intergenic |
| GATATCGACGGTGGTGTTGG+TGG | 0.547514 | 3.1:-81925851 | MS.gene32853:CDS |
| ATGGCACCTTTGTTCAATTG+GGG | 0.552161 | 3.1:-81926157 | MS.gene32853:CDS |
| ATAAAGGCTTTGGAAGAAGC+TGG | 0.554855 | 3.1:-81924613 | MS.gene32853:CDS |
| TTCTTAAGGAAATCAGGAGT+AGG | 0.558894 | 3.1:+81925019 | None:intergenic |
| TGGGTAGTCACTAAGAAGTC+CGG | 0.559717 | 3.1:-81923573 | MS.gene32853:CDS |
| TGATCTGGAAGAAATGAAAG+AGG | 0.560195 | 3.1:-81923481 | MS.gene32853:CDS |
| GGAAGAAGCTGGTGGTTGGT+TGG | 0.560517 | 3.1:-81924602 | MS.gene32853:CDS |
| GTGTTCTCAAATAGGAGATA+CGG | 0.560798 | 3.1:+81923660 | None:intergenic |
| ACAATCTTTGATTAAGGACG+AGG | 0.563412 | 3.1:-81925191 | MS.gene32853:CDS |
| CTTTGGAAGAAGCTGGTGGT+TGG | 0.566030 | 3.1:-81924606 | MS.gene32853:CDS |
| GAAGTCCGGTCGTTCATCGG+AGG | 0.568647 | 3.1:-81923559 | MS.gene32853:CDS |
| GCCTGATGTCATAAAGGCCA+AGG | 0.569837 | 3.1:-81924308 | MS.gene32853:intron |
| ATTAAACCTGTTCCAAAAGG+TGG | 0.570493 | 3.1:-81925497 | MS.gene32853:CDS |
| TCCCATGACAATGTTCGTAC+CGG | 0.571170 | 3.1:-81923778 | MS.gene32853:CDS |
| GGAGTCTACTTTCAGCTCAA+GGG | 0.571457 | 3.1:-81923350 | MS.gene32853:CDS |
| AAAACGCTAAACAACTCACA+TGG | 0.573149 | 3.1:-81925988 | MS.gene32853:CDS |
| CTCCGGTACGAACATTGTCA+TGG | 0.573525 | 3.1:+81923776 | None:intergenic |
| AATTCTTCTTCAAGAGACAA+AGG | 0.578590 | 3.1:-81926019 | MS.gene32853:CDS |
| GGAGGCCGAGATTCCTGCGT+GGG | 0.590482 | 3.1:-81923757 | MS.gene32853:CDS |
| GAAACTAAACCAAACAATGC+AGG | 0.595411 | 3.1:+81925914 | None:intergenic |
| TTTGTGAGAAATTGCAAAGG+AGG | 0.595685 | 3.1:+81925602 | None:intergenic |
| AAGTCCGGTCGTTCATCGGA+GGG | 0.596120 | 3.1:-81923558 | MS.gene32853:CDS |
| TAGGTTCTATACATTCATCA+AGG | 0.599235 | 3.1:-81925795 | MS.gene32853:CDS |
| TCCGGTACGAACATTGTCAT+GGG | 0.602923 | 3.1:+81923777 | None:intergenic |
| TTCGCACCCCAATTGAACAA+AGG | 0.603697 | 3.1:+81926151 | None:intergenic |
| AGAGGAAATCAGGAGACAAG+AGG | 0.607350 | 3.1:-81923463 | MS.gene32853:CDS |
| ACGGTGTCGGTACAAAATGT+TGG | 0.614765 | 3.1:+81925144 | None:intergenic |
| GGTGCCCACAATTCAAGATG+TGG | 0.618003 | 3.1:+81925698 | None:intergenic |
| CATGACAATGTTCGTACCGG+AGG | 0.621883 | 3.1:-81923775 | MS.gene32853:CDS |
| ATCTCAGGCCTATTCCAGCT+AGG | 0.627956 | 3.1:-81923609 | MS.gene32853:CDS |
| AGCGACGCGGCGTTTGACGG+CGG | 0.631539 | 3.1:+81925892 | None:intergenic |
| AAGATTCAGGTAACTCACAT+TGG | 0.636142 | 3.1:+81924398 | None:intergenic |
| GGATCTGAACAAGAACCATA+GGG | 0.636957 | 3.1:+81925435 | None:intergenic |
| TGAGAAATGACATGACTGCT+GGG | 0.640975 | 3.1:+81923721 | None:intergenic |
| GCAGTACCTCCACATCATTG+AGG | 0.643002 | 3.1:+81924512 | None:intergenic |
| TTATGACATCAGGCAAACAA+AGG | 0.646531 | 3.1:+81924317 | None:intergenic |
| AGAACCGACGCGGATATCGA+CGG | 0.646947 | 3.1:-81925863 | MS.gene32853:CDS |
| AGGATGAGAATCTTCTAACA+AGG | 0.648818 | 3.1:-81924738 | MS.gene32853:CDS |
| CGGTTCTACCAGAAGCGACG+CGG | 0.649354 | 3.1:+81925879 | None:intergenic |
| CCTATTTGAGAACACCATGT+CGG | 0.660812 | 3.1:-81923652 | MS.gene32853:CDS |
| GACACCGTGTGATTAGAGAT+GGG | 0.666771 | 3.1:-81925129 | MS.gene32853:CDS |
| CGCTTCTGGTAGAACCGACG+CGG | 0.667172 | 3.1:-81925873 | MS.gene32853:CDS |
| GCATTTGTGAGAAATTGCAA+AGG | 0.670287 | 3.1:+81925599 | None:intergenic |
| GTTGGAGAGGACCACTGTGG+AGG | 0.676327 | 3.1:-81924584 | MS.gene32853:CDS |
| CATCTCTAATCACACGGTGT+CGG | 0.680410 | 3.1:+81925131 | None:intergenic |
| TGTACCCATCTCTAATCACA+CGG | 0.680975 | 3.1:+81925125 | None:intergenic |
| ACATCCCTAACACCAAATGT+CGG | 0.680982 | 3.1:+81925677 | None:intergenic |
| AAACGCTAAACAACTCACAT+GGG | 0.684108 | 3.1:-81925987 | MS.gene32853:CDS |
| ACCACCGTCGATATCCGCGT+CGG | 0.706571 | 3.1:+81925859 | None:intergenic |
| AAGGCTTTGGAAGAAGCTGG+TGG | 0.707444 | 3.1:-81924610 | MS.gene32853:CDS |
| ATATAACAAACAACCCACGC+AGG | 0.712609 | 3.1:+81923744 | None:intergenic |
| CGGAGGCCGAGATTCCTGCG+TGG | 0.712962 | 3.1:-81923758 | MS.gene32853:CDS |
| AGAAACCAAAGCATCAACGA+GGG | 0.719081 | 3.1:-81923515 | MS.gene32853:CDS |
| GGTGCGAAAGAAAGTCACAA+AGG | 0.727517 | 3.1:-81926136 | MS.gene32853:CDS |
| AAGTCACAAAGGAACACCAG+TGG | 0.729436 | 3.1:-81926125 | MS.gene32853:CDS |
| GAGAAACCAAAGCATCAACG+AGG | 0.730620 | 3.1:-81923516 | MS.gene32853:CDS |
| TTGGTTGGAGAGGACCACTG+TGG | 0.738638 | 3.1:-81924587 | MS.gene32853:CDS |
| ACCGACGCGGATATCGACGG+TGG | 0.749510 | 3.1:-81925860 | MS.gene32853:CDS |
| AATGTCCATATCCTCCACAG+TGG | 0.778249 | 3.1:+81924573 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATATTTGATTGGATT+TGG | - | chr3.1:81924592-81924611 | MS.gene32853:CDS | 15.0% |
| !! | ATCAAAATTACCAAAAAAAA+AGG | - | chr3.1:81925244-81925263 | MS.gene32853:CDS | 15.0% |
| !!! | AATTGATTGATGATTAATTT+AGG | - | chr3.1:81924458-81924477 | MS.gene32853:intron | 15.0% |
| !!! | TTTTGTTGTTATGTTTTTTA+AGG | - | chr3.1:81924118-81924137 | MS.gene32853:intron | 15.0% |
| !! | AATTACACAATCTTTGATTA+AGG | - | chr3.1:81924229-81924248 | MS.gene32853:intron | 20.0% |
| !! | ACATAACAAAATGTATTTGA+AGG | - | chr3.1:81926014-81926033 | MS.gene32853:CDS | 20.0% |
| !! | AGATAAACAAAACAAACATT+TGG | + | chr3.1:81924964-81924983 | None:intergenic | 20.0% |
| !! | TAATCAAAGATTGTGTAATT+GGG | + | chr3.1:81924229-81924248 | None:intergenic | 20.0% |
| !! | TTAATCAAAGATTGTGTAAT+TGG | + | chr3.1:81924230-81924249 | None:intergenic | 20.0% |
| !!! | AATGTTTGTTTTGTTTATCT+TGG | - | chr3.1:81924964-81924983 | MS.gene32853:intron | 20.0% |
| !!! | GTGTTTTGTTAGTAATTTTA+CGG | + | chr3.1:81925383-81925402 | None:intergenic | 20.0% |
| !!! | TGAATCAAAAAATTGGATTT+TGG | + | chr3.1:81924185-81924204 | None:intergenic | 20.0% |
| !!! | TTTATGTATGCCTTTTTTTT+TGG | + | chr3.1:81925257-81925276 | None:intergenic | 20.0% |
| ! | AAAAATGGAGAATCCAAATT+GGG | - | chr3.1:81923328-81923347 | MS.gene32853:CDS | 25.0% |
| ! | AAAAGTAAATCTTCTTCTGA+AGG | + | chr3.1:81923374-81923393 | None:intergenic | 25.0% |
| ! | AAAATTAAACCTGTTCCAAA+AGG | - | chr3.1:81923926-81923945 | MS.gene32853:intron | 25.0% |
| ! | AAACAAAATTTCCATGAGAA+GGG | + | chr3.1:81925167-81925186 | None:intergenic | 25.0% |
| ! | CAGAACTTGAATCAAAAAAT+TGG | + | chr3.1:81924192-81924211 | None:intergenic | 25.0% |
| ! | TAAAAATGGAGAATCCAAAT+TGG | - | chr3.1:81923327-81923346 | MS.gene32853:CDS | 25.0% |
| ! | TATTCAGAGTATAGATAGAT+TGG | - | chr3.1:81923868-81923887 | MS.gene32853:CDS | 25.0% |
| ! | TGTTTCTTTAATCTAGACTA+CGG | - | chr3.1:81925420-81925439 | MS.gene32853:CDS | 25.0% |
| ! | TTTAGTAGTACCTTAAAATG+AGG | + | chr3.1:81924440-81924459 | None:intergenic | 25.0% |
| !! | AGTGTTTTCCTTAATTTCTT+TGG | - | chr3.1:81924762-81924781 | MS.gene32853:CDS | 25.0% |
| !! | GTGTTTTCCTTAATTTCTTT+GGG | - | chr3.1:81924763-81924782 | MS.gene32853:CDS | 25.0% |
| !!! | CAATTTTTTGATTCAAGTTC+TGG | - | chr3.1:81924190-81924209 | MS.gene32853:intron | 25.0% |
| !!! | TCTCTTGAAGAAGAATTTTT+TGG | + | chr3.1:81923404-81923423 | None:intergenic | 25.0% |
| !!! | TTCTTTGTTTAGGATGTTTT+TGG | - | chr3.1:81923891-81923910 | MS.gene32853:intron | 25.0% |
| !!! | TTGTTGCTTATTTTAAAGGT+TGG | - | chr3.1:81923693-81923712 | MS.gene32853:CDS | 25.0% |
| !!! | TTTTGTTTGAGACATCATTT+TGG | - | chr3.1:81925179-81925198 | MS.gene32853:CDS | 25.0% |
| AAATTCAATGCTATGATCTC+AGG | - | chr3.1:81925802-81925821 | MS.gene32853:CDS | 30.0% | |
| AAGAAATGAAAGAGGAAATC+AGG | - | chr3.1:81925953-81925972 | MS.gene32853:CDS | 30.0% | |
| AATAGAGTGAACGAGTAAAA+TGG | + | chr3.1:81925616-81925635 | None:intergenic | 30.0% | |
| AATTCTTCTTCAAGAGACAA+AGG | - | chr3.1:81923407-81923426 | MS.gene32853:CDS | 30.0% | |
| CAAACAAAATTTCCATGAGA+AGG | + | chr3.1:81925168-81925187 | None:intergenic | 30.0% | |
| CATTGAACCCAAAGAAATTA+AGG | + | chr3.1:81924773-81924792 | None:intergenic | 30.0% | |
| TAGGTTCTATACATTCATCA+AGG | - | chr3.1:81923631-81923650 | MS.gene32853:CDS | 30.0% | |
| TATGTGTATCTCAATTCTCA+AGG | - | chr3.1:81925141-81925160 | MS.gene32853:CDS | 30.0% | |
| TGTTACAGTTGTGCTTATTA+TGG | - | chr3.1:81925497-81925516 | MS.gene32853:CDS | 30.0% | |
| TTTCACATAGCTACAATTCA+TGG | + | chr3.1:81924348-81924367 | None:intergenic | 30.0% | |
| ! | AATGAGGAACAGTTTTCTTA+AGG | + | chr3.1:81924424-81924443 | None:intergenic | 30.0% |
| ! | ACAGTTTTCTTAAGGAAATC+AGG | + | chr3.1:81924416-81924435 | None:intergenic | 30.0% |
| ! | ACTATGAAAGGAAAAGCTTT+TGG | + | chr3.1:81925745-81925764 | None:intergenic | 30.0% |
| ! | ATTCATTTTCCTCAATGATG+TGG | - | chr3.1:81924905-81924924 | MS.gene32853:intron | 30.0% |
| ! | ATTGAATTTTGTAACCGACA+TGG | + | chr3.1:81925791-81925810 | None:intergenic | 30.0% |
| ! | CTTAATTTCTTTGGGTTCAA+TGG | - | chr3.1:81924771-81924790 | MS.gene32853:CDS | 30.0% |
| ! | CTTTTTCCTTCTTAGAAAGT+TGG | - | chr3.1:81925585-81925604 | MS.gene32853:CDS | 30.0% |
| ! | GAAAACTGTTCCTCATTTTA+AGG | - | chr3.1:81924427-81924446 | MS.gene32853:intron | 30.0% |
| ! | GATAGATTGGTTCTTTGTTT+AGG | - | chr3.1:81923881-81923900 | MS.gene32853:intron | 30.0% |
| ! | GTTGTGCTTATTATGGATTA+TGG | - | chr3.1:81925504-81925523 | MS.gene32853:CDS | 30.0% |
| !! | TGGTAATTTTGATGCATTCA+GGG | + | chr3.1:81925237-81925256 | None:intergenic | 30.0% |
| !! | TTGGTAATTTTGATGCATTC+AGG | + | chr3.1:81925238-81925257 | None:intergenic | 30.0% |
| !!! | GAGGTTGTTGCTTATTTTAA+AGG | - | chr3.1:81923689-81923708 | MS.gene32853:CDS | 30.0% |
| !!! | TGATTGGTTTTATGCTAGAT+GGG | - | chr3.1:81923775-81923794 | MS.gene32853:CDS | 30.0% |
| !!! | TTGATTGGTTTTATGCTAGA+TGG | - | chr3.1:81923774-81923793 | MS.gene32853:CDS | 30.0% |
| AAAACGCTAAACAACTCACA+TGG | - | chr3.1:81923438-81923457 | MS.gene32853:CDS | 35.0% | |
| AAACGCTAAACAACTCACAT+GGG | - | chr3.1:81923439-81923458 | MS.gene32853:CDS | 35.0% | |
| AAATGTGTGAGACGTTGTTA+CGG | - | chr3.1:81925207-81925226 | MS.gene32853:CDS | 35.0% | |
| AACACCAGTGGTTGTAAAAA+TGG | - | chr3.1:81923313-81923332 | MS.gene32853:CDS | 35.0% | |
| AAGATTCAGGTAACTCACAT+TGG | + | chr3.1:81925031-81925050 | None:intergenic | 35.0% | |
| ACAACGTGACAAACTAACAA+AGG | + | chr3.1:81925285-81925304 | None:intergenic | 35.0% | |
| ACAATCTTTGATTAAGGACG+AGG | - | chr3.1:81924235-81924254 | MS.gene32853:intron | 35.0% | |
| AGATCTTGAATCTGGAGATA+AGG | - | chr3.1:81923961-81923980 | MS.gene32853:intron | 35.0% | |
| AGGATGAGAATCTTCTAACA+AGG | - | chr3.1:81924688-81924707 | MS.gene32853:CDS | 35.0% | |
| AGTTCATCAATGTCCCAATT+TGG | + | chr3.1:81923344-81923363 | None:intergenic | 35.0% | |
| AGTTTGGAGAATAAAGGCTT+TGG | - | chr3.1:81924803-81924822 | MS.gene32853:intron | 35.0% | |
| ATTAAACCTGTTCCAAAAGG+TGG | - | chr3.1:81923929-81923948 | MS.gene32853:intron | 35.0% | |
| CACTGGAAACATTAACAACT+TGG | + | chr3.1:81925008-81925027 | None:intergenic | 35.0% | |
| CCAAAAAGAAAGATACTCCT+TGG | + | chr3.1:81926125-81926144 | None:intergenic | 35.0% | |
| CGTGTAGCTTCAAGAAATTA+TGG | - | chr3.1:81924532-81924551 | MS.gene32853:CDS | 35.0% | |
| CTACAGGATAATGACGAATT+AGG | - | chr3.1:81924633-81924652 | MS.gene32853:CDS | 35.0% | |
| CTTTCTTGCAGATAAGCATA+TGG | - | chr3.1:81925539-81925558 | MS.gene32853:CDS | 35.0% | |
| GAAACTAAACCAAACAATGC+AGG | + | chr3.1:81923515-81923534 | None:intergenic | 35.0% | |
| GAATTGAGATACACATACCT+TGG | + | chr3.1:81925138-81925157 | None:intergenic | 35.0% | |
| GATCTTGAATCTGGAGATAA+GGG | - | chr3.1:81923962-81923981 | MS.gene32853:intron | 35.0% | |
| GATGTTTCAGATCTTGAATC+TGG | - | chr3.1:81923953-81923972 | MS.gene32853:intron | 35.0% | |
| GCATTTGTGAGAAATTGCAA+AGG | + | chr3.1:81923830-81923849 | None:intergenic | 35.0% | |
| GTAGCTTCAAGAAATTATGG+TGG | - | chr3.1:81924535-81924554 | MS.gene32853:CDS | 35.0% | |
| GTGTTCTCAAATAGGAGATA+CGG | + | chr3.1:81925769-81925788 | None:intergenic | 35.0% | |
| GTTCATAAATGGCAAGAAGA+AGG | - | chr3.1:81924257-81924276 | MS.gene32853:intron | 35.0% | |
| TATTGCAGCAGTGTGTAATT+TGG | - | chr3.1:81924154-81924173 | MS.gene32853:intron | 35.0% | |
| TCTTCAAGAGACAAAGGAAA+AGG | - | chr3.1:81923413-81923432 | MS.gene32853:CDS | 35.0% | |
| TCTTTCATTTCTTCCAGATC+AGG | + | chr3.1:81925946-81925965 | None:intergenic | 35.0% | |
| TGATCTGGAAGAAATGAAAG+AGG | - | chr3.1:81925945-81925964 | MS.gene32853:CDS | 35.0% | |
| TTAAGGACGAGGTTCATAAA+TGG | - | chr3.1:81924246-81924265 | MS.gene32853:intron | 35.0% | |
| TTATGACATCAGGCAAACAA+AGG | + | chr3.1:81925112-81925131 | None:intergenic | 35.0% | |
| TTCTTAAGGAAATCAGGAGT+AGG | + | chr3.1:81924410-81924429 | None:intergenic | 35.0% | |
| TTGTTTGCCTGATGTCATAA+AGG | - | chr3.1:81925112-81925131 | MS.gene32853:CDS | 35.0% | |
| TTTGTGAGAAATTGCAAAGG+AGG | + | chr3.1:81923827-81923846 | None:intergenic | 35.0% | |
| ! | CAAGGTGTTTCTATGTTTGT+CGG | - | chr3.1:81923649-81923668 | MS.gene32853:CDS | 35.0% |
| ! | GGTGGATGTGTCATATATTT+TGG | - | chr3.1:81924553-81924572 | MS.gene32853:CDS | 35.0% |
| ! | GTATTTGAAGGAACTTGCTT+TGG | - | chr3.1:81926026-81926045 | MS.gene32853:CDS | 35.0% |
| ! | TACTTTTAACAGCTTCAGCA+AGG | - | chr3.1:81926055-81926074 | MS.gene32853:CDS | 35.0% |
| ! | TAGATGGTCTTTTGTGAACA+AGG | - | chr3.1:81924668-81924687 | MS.gene32853:CDS | 35.0% |
| !! | AGAACCTACTTTTCACTGTA+GGG | + | chr3.1:81923619-81923638 | None:intergenic | 35.0% |
| !! | CTTGTTGTTCCACTTCAAAA+TGG | + | chr3.1:81924737-81924756 | None:intergenic | 35.0% |
| !! | GGAGTATCTTTCTTTTTGGT+TGG | - | chr3.1:81926126-81926145 | MS.gene32853:CDS | 35.0% |
| !! | GGTGTTTTTGTTGTGTTTTG+AGG | - | chr3.1:81923670-81923689 | MS.gene32853:CDS | 35.0% |
| !! | GTGTTAGGGATGTTTTTGAT+TGG | - | chr3.1:81923759-81923778 | MS.gene32853:CDS | 35.0% |
| !! | TAGAACCTACTTTTCACTGT+AGG | + | chr3.1:81923620-81923639 | None:intergenic | 35.0% |
| !! | TCTGTGTTTCCATTTTGAAG+TGG | - | chr3.1:81924725-81924744 | MS.gene32853:CDS | 35.0% |
| !! | TTCTACTTCTTGCTATTCCA+AGG | - | chr3.1:81926105-81926124 | MS.gene32853:CDS | 35.0% |
| !! | TTCTCCATTTTTACAACCAC+TGG | + | chr3.1:81923320-81923339 | None:intergenic | 35.0% |
| !! | TTGGTTGGTCTAGACTTAAT+TGG | - | chr3.1:81926141-81926160 | MS.gene32853:CDS | 35.0% |
| !!! | CCAAGGAGTATCTTTCTTTT+TGG | - | chr3.1:81926122-81926141 | MS.gene32853:CDS | 35.0% |
| !!! | GTTAGTTTGTCACGTTGTTT+TGG | - | chr3.1:81925287-81925306 | MS.gene32853:CDS | 35.0% |
| ACAGAAAACAGCAGCATAGA+TGG | - | chr3.1:81925060-81925079 | MS.gene32853:CDS | 40.0% | |
| ACATCCCTAACACCAAATGT+CGG | + | chr3.1:81923752-81923771 | None:intergenic | 40.0% | |
| ACCTCTTTCTCATTGCACAT+GGG | + | chr3.1:81924016-81924035 | None:intergenic | 40.0% | |
| AGAACCCTACAGTGAAAAGT+AGG | - | chr3.1:81923612-81923631 | MS.gene32853:CDS | 40.0% | |
| AGATAAGGGTTTCTTCCCTA+TGG | - | chr3.1:81923976-81923995 | MS.gene32853:intron | 40.0% | |
| AGGAGATACGGTACTATGAA+AGG | + | chr3.1:81925757-81925776 | None:intergenic | 40.0% | |
| ATATAACAAACAACCCACGC+AGG | + | chr3.1:81925685-81925704 | None:intergenic | 40.0% | |
| ATCAGGAGTAGGCTGAAAAT+CGG | + | chr3.1:81924399-81924418 | None:intergenic | 40.0% | |
| ATGGCACCTTTGTTCAATTG+GGG | - | chr3.1:81923269-81923288 | MS.gene32853:CDS | 40.0% | |
| ATTAGAGATGGGTACAAAGC+TGG | - | chr3.1:81924308-81924327 | MS.gene32853:intron | 40.0% | |
| CAAAGGCGAAACAATTGCAT+TGG | + | chr3.1:81925095-81925114 | None:intergenic | 40.0% | |
| CAAATTGCTCCTGCATTGTT+TGG | - | chr3.1:81923503-81923522 | MS.gene32853:CDS | 40.0% | |
| CAGCAGTGTGTAATTTGGAT+TGG | - | chr3.1:81924159-81924178 | MS.gene32853:intron | 40.0% | |
| CCTATTTGAGAACACCATGT+CGG | - | chr3.1:81925774-81925793 | MS.gene32853:CDS | 40.0% | |
| CTGTAAGCTTCGTAAGATTC+AGG | + | chr3.1:81925044-81925063 | None:intergenic | 40.0% | |
| GGATCTGAACAAGAACCATA+GGG | + | chr3.1:81923994-81924013 | None:intergenic | 40.0% | |
| TACCTCTTTCTCATTGCACA+TGG | + | chr3.1:81924017-81924036 | None:intergenic | 40.0% | |
| TGAGAAATGACATGACTGCT+GGG | + | chr3.1:81925708-81925727 | None:intergenic | 40.0% | |
| TGATTGGATTTGGATCCACT+TGG | - | chr3.1:81924602-81924621 | MS.gene32853:CDS | 40.0% | |
| TGCTCCACATCTTGAATTGT+GGG | - | chr3.1:81923724-81923743 | MS.gene32853:CDS | 40.0% | |
| TGCTGGAGTTTGGAGAATAA+AGG | - | chr3.1:81924797-81924816 | MS.gene32853:intron | 40.0% | |
| TGGGACATTGATGAACTTGA+AGG | - | chr3.1:81923347-81923366 | MS.gene32853:CDS | 40.0% | |
| TGTACCCATCTCTAATCACA+CGG | + | chr3.1:81924304-81924323 | None:intergenic | 40.0% | |
| TTGAGAAATGACATGACTGC+TGG | + | chr3.1:81925709-81925728 | None:intergenic | 40.0% | |
| ! | AGAAACCAAAGCATCAACGA+GGG | - | chr3.1:81925911-81925930 | MS.gene32853:CDS | 40.0% |
| ! | CATTTTCCTCAATGATGTGG+AGG | - | chr3.1:81924908-81924927 | MS.gene32853:intron | 40.0% |
| ! | GCAACACCAACTTTCTAAGA+AGG | + | chr3.1:81925594-81925613 | None:intergenic | 40.0% |
| !! | ATAAAGGCTTTGGAAGAAGC+TGG | - | chr3.1:81924813-81924832 | MS.gene32853:intron | 40.0% |
| !! | TCTGAAACATCACCACCTTT+TGG | + | chr3.1:81923944-81923963 | None:intergenic | 40.0% |
| !!! | AAAGGAAAAGCTTTTGGAGC+TGG | + | chr3.1:81925739-81925758 | None:intergenic | 40.0% |
| AAGTCACAAAGGAACACCAG+TGG | - | chr3.1:81923301-81923320 | MS.gene32853:CDS | 45.0% | |
| AATGTCCATATCCTCCACAG+TGG | + | chr3.1:81924856-81924875 | None:intergenic | 45.0% | |
| AATTCTCAAGGCCCTTCTCA+TGG | - | chr3.1:81925153-81925172 | MS.gene32853:CDS | 45.0% | |
| AGAGGAAATCAGGAGACAAG+AGG | - | chr3.1:81925963-81925982 | MS.gene32853:CDS | 45.0% | |
| AGGAGTCTACTTTCAGCTCA+AGG | - | chr3.1:81926075-81926094 | MS.gene32853:CDS | 45.0% | |
| CAGCAGCTCTATGAGCTTTA+AGG | + | chr3.1:81923472-81923491 | None:intergenic | 45.0% | |
| CATCTCTAATCACACGGTGT+CGG | + | chr3.1:81924298-81924317 | None:intergenic | 45.0% | |
| CCGACATGGTGTTCTCAAAT+AGG | + | chr3.1:81925777-81925796 | None:intergenic | 45.0% | |
| CCTCTTTCTCATTGCACATG+GGG | + | chr3.1:81924015-81924034 | None:intergenic | 45.0% | |
| CTTAAAGCTCATAGAGCTGC+TGG | - | chr3.1:81923470-81923489 | MS.gene32853:CDS | 45.0% | |
| GACACCGTGTGATTAGAGAT+GGG | - | chr3.1:81924297-81924316 | MS.gene32853:intron | 45.0% | |
| GGAGTCTACTTTCAGCTCAA+GGG | - | chr3.1:81926076-81926095 | MS.gene32853:CDS | 45.0% | |
| GGGATCTGAACAAGAACCAT+AGG | + | chr3.1:81923995-81924014 | None:intergenic | 45.0% | |
| GGTGCGAAAGAAAGTCACAA+AGG | - | chr3.1:81923290-81923309 | MS.gene32853:CDS | 45.0% | |
| GTGCTCCACATCTTGAATTG+TGG | - | chr3.1:81923723-81923742 | MS.gene32853:CDS | 45.0% | |
| TAAGAAGTCCGGTCGTTCAT+CGG | - | chr3.1:81925864-81925883 | MS.gene32853:CDS | 45.0% | |
| TAGGACTTGTGCAAGCTAGA+TGG | - | chr3.1:81924652-81924671 | MS.gene32853:CDS | 45.0% | |
| TCAATGGTACTGCTGGAGTT+TGG | - | chr3.1:81924787-81924806 | MS.gene32853:CDS | 45.0% | |
| TCCCATGACAATGTTCGTAC+CGG | - | chr3.1:81925648-81925667 | MS.gene32853:CDS | 45.0% | |
| TCCGGTACGAACATTGTCAT+GGG | + | chr3.1:81925652-81925671 | None:intergenic | 45.0% | |
| TGGGTAGTCACTAAGAAGTC+CGG | - | chr3.1:81925853-81925872 | MS.gene32853:CDS | 45.0% | |
| TTCGAGCTCATCTTCATGGA+TGG | - | chr3.1:81924880-81924899 | MS.gene32853:intron | 45.0% | |
| TTCGCACCCCAATTGAACAA+AGG | + | chr3.1:81923278-81923297 | None:intergenic | 45.0% | |
| ! | ACCTTGGCCTTTATGACATC+AGG | + | chr3.1:81925122-81925141 | None:intergenic | 45.0% |
| ! | GAGAAACCAAAGCATCAACG+AGG | - | chr3.1:81925910-81925929 | MS.gene32853:CDS | 45.0% |
| ! | TTTGGGTTCAATGGTACTGC+TGG | - | chr3.1:81924780-81924799 | MS.gene32853:CDS | 45.0% |
| !! | ACGGTGTCGGTACAAAATGT+TGG | + | chr3.1:81924285-81924304 | None:intergenic | 45.0% |
| !!! | ACATCACCACCTTTTGGAAC+AGG | + | chr3.1:81923938-81923957 | None:intergenic | 45.0% |
| !! | ATAATTAATTAATATTTGAT+TGG | - | chr3.1:81924586-81924605 | MS.gene32853:CDS | 5.0% |
| AACAACCCACGCAGGAATCT+CGG | + | chr3.1:81925677-81925696 | None:intergenic | 50.0% | |
| ACGCACTTCCTAGCTGGAAT+AGG | + | chr3.1:81925828-81925847 | None:intergenic | 50.0% | |
| ATCTCAGGCCTATTCCAGCT+AGG | - | chr3.1:81925817-81925836 | MS.gene32853:CDS | 50.0% | |
| ATTCGTACGCACTTCCTAGC+TGG | + | chr3.1:81925834-81925853 | None:intergenic | 50.0% | |
| CAGCAGCATAGATGGCATTC+TGG | - | chr3.1:81925068-81925087 | MS.gene32853:CDS | 50.0% | |
| CAGGTAACTCACATTGGCAC+TGG | + | chr3.1:81925025-81925044 | None:intergenic | 50.0% | |
| CATGACAATGTTCGTACCGG+AGG | - | chr3.1:81925651-81925670 | MS.gene32853:CDS | 50.0% | |
| CCCCATGTGCAATGAGAAAG+AGG | - | chr3.1:81924012-81924031 | MS.gene32853:intron | 50.0% | |
| CCTGTAGCATCATCACCAAG+TGG | + | chr3.1:81924620-81924639 | None:intergenic | 50.0% | |
| CGACACCGTGTGATTAGAGA+TGG | - | chr3.1:81924296-81924315 | MS.gene32853:intron | 50.0% | |
| CTCCGGTACGAACATTGTCA+TGG | + | chr3.1:81925653-81925672 | None:intergenic | 50.0% | |
| GATGACCCTCGTTGATGCTT+TGG | + | chr3.1:81925919-81925938 | None:intergenic | 50.0% | |
| GCAGTACCTCCACATCATTG+AGG | + | chr3.1:81924917-81924936 | None:intergenic | 50.0% | |
| GCCTGATGTCATAAAGGCCA+AGG | - | chr3.1:81925118-81925137 | MS.gene32853:CDS | 50.0% | |
| GCTGTTCGAGCTCATCTTCA+TGG | - | chr3.1:81924876-81924895 | MS.gene32853:intron | 50.0% | |
| GGTGCCCACAATTCAAGATG+TGG | + | chr3.1:81923731-81923750 | None:intergenic | 50.0% | |
| ! | AGCTAGGAAGTGCGTACGAA+TGG | - | chr3.1:81925833-81925852 | MS.gene32853:CDS | 50.0% |
| ! | CTTTGGAAGAAGCTGGTGGT+TGG | - | chr3.1:81924820-81924839 | MS.gene32853:intron | 50.0% |
| ! | GCTAGGAAGTGCGTACGAAT+GGG | - | chr3.1:81925834-81925853 | MS.gene32853:CDS | 50.0% |
| !! | AAGGCTTTGGAAGAAGCTGG+TGG | - | chr3.1:81924816-81924835 | MS.gene32853:intron | 50.0% |
| !! | CCACTTGGTGATGATGCTAC+AGG | - | chr3.1:81924617-81924636 | MS.gene32853:CDS | 50.0% |
| !! | GAATTGTGGGCACCGACATT+TGG | - | chr3.1:81923737-81923756 | MS.gene32853:CDS | 50.0% |
| !! | GGCACCGACATTTGGTGTTA+GGG | - | chr3.1:81923745-81923764 | MS.gene32853:CDS | 50.0% |
| AAGTCCGGTCGTTCATCGGA+GGG | - | chr3.1:81925868-81925887 | MS.gene32853:CDS | 55.0% | |
| AGAACCGACGCGGATATCGA+CGG | - | chr3.1:81923563-81923582 | MS.gene32853:CDS | 55.0% | |
| AGGGTCATCAGCACCTGATC+TGG | - | chr3.1:81925930-81925949 | MS.gene32853:CDS | 55.0% | |
| ATCACCCTCCGATGAACGAC+CGG | + | chr3.1:81925875-81925894 | None:intergenic | 55.0% | |
| GAGGACCACTGTGGAGGATA+TGG | - | chr3.1:81924848-81924867 | MS.gene32853:intron | 55.0% | |
| GGAAGAAGCTGGTGGTTGGT+TGG | - | chr3.1:81924824-81924843 | MS.gene32853:intron | 55.0% | |
| TTGGTTGGAGAGGACCACTG+TGG | - | chr3.1:81924839-81924858 | MS.gene32853:intron | 55.0% | |
| ! | AAGCTGGTGGTTGGTTGGAG+AGG | - | chr3.1:81924829-81924848 | MS.gene32853:intron | 55.0% |
| ! | GATATCGACGGTGGTGTTGG+TGG | - | chr3.1:81923575-81923594 | MS.gene32853:CDS | 55.0% |
| !! | GGGCACCGACATTTGGTGTT+AGG | - | chr3.1:81923744-81923763 | MS.gene32853:CDS | 55.0% |
| ACCACCGTCGATATCCGCGT+CGG | + | chr3.1:81923570-81923589 | None:intergenic | 60.0% | |
| AGAAGCGACGCGGCGTTTGA+CGG | + | chr3.1:81923540-81923559 | None:intergenic | 60.0% | |
| CGCTTCTGGTAGAACCGACG+CGG | - | chr3.1:81923553-81923572 | MS.gene32853:CDS | 60.0% | |
| CGGTTCTACCAGAAGCGACG+CGG | + | chr3.1:81923550-81923569 | None:intergenic | 60.0% | |
| GAAGTCCGGTCGTTCATCGG+AGG | - | chr3.1:81925867-81925886 | MS.gene32853:CDS | 60.0% | |
| GCGGATATCGACGGTGGTGT+TGG | - | chr3.1:81923572-81923591 | MS.gene32853:CDS | 60.0% | |
| GTTGGAGAGGACCACTGTGG+AGG | - | chr3.1:81924842-81924861 | MS.gene32853:intron | 60.0% | |
| !! | ACGGTGGTGTTGGTGGTGGT+AGG | - | chr3.1:81923582-81923601 | MS.gene32853:CDS | 60.0% |
| !! | ATCGACGGTGGTGTTGGTGG+TGG | - | chr3.1:81923578-81923597 | MS.gene32853:CDS | 60.0% |
| !! | CGGTGGTGTTGGTGGTGGTA+GGG | - | chr3.1:81923583-81923602 | MS.gene32853:CDS | 60.0% |
| ACCGACGCGGATATCGACGG+TGG | - | chr3.1:81923566-81923585 | MS.gene32853:CDS | 65.0% | |
| CACGCAGGAATCTCGGCCTC+CGG | + | chr3.1:81925670-81925689 | None:intergenic | 65.0% | |
| GGAGGCCGAGATTCCTGCGT+GGG | - | chr3.1:81925669-81925688 | MS.gene32853:CDS | 65.0% | |
| GTCAAACGCCGCGTCGCTTC+TGG | - | chr3.1:81923539-81923558 | MS.gene32853:CDS | 65.0% | |
| AGCGACGCGGCGTTTGACGG+CGG | + | chr3.1:81923537-81923556 | None:intergenic | 70.0% | |
| CGGAGGCCGAGATTCCTGCG+TGG | - | chr3.1:81925668-81925687 | MS.gene32853:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81923269 | 81926179 | 81923269 | ID=MS.gene32853 |
| chr3.1 | mRNA | 81923269 | 81926179 | 81923269 | ID=MS.gene32853.t1;Parent=MS.gene32853 |
| chr3.1 | exon | 81925415 | 81926179 | 81925415 | ID=MS.gene32853.t1.exon1;Parent=MS.gene32853.t1 |
| chr3.1 | CDS | 81925415 | 81926179 | 81925415 | ID=cds.MS.gene32853.t1;Parent=MS.gene32853.t1 |
| chr3.1 | exon | 81925000 | 81925308 | 81925000 | ID=MS.gene32853.t1.exon2;Parent=MS.gene32853.t1 |
| chr3.1 | CDS | 81925000 | 81925308 | 81925000 | ID=cds.MS.gene32853.t1;Parent=MS.gene32853.t1 |
| chr3.1 | exon | 81924519 | 81924809 | 81924519 | ID=MS.gene32853.t1.exon3;Parent=MS.gene32853.t1 |
| chr3.1 | CDS | 81924519 | 81924809 | 81924519 | ID=cds.MS.gene32853.t1;Parent=MS.gene32853.t1 |
| chr3.1 | exon | 81924309 | 81924422 | 81924309 | ID=MS.gene32853.t1.exon4;Parent=MS.gene32853.t1 |
| chr3.1 | CDS | 81924309 | 81924422 | 81924309 | ID=cds.MS.gene32853.t1;Parent=MS.gene32853.t1 |
| chr3.1 | exon | 81923269 | 81923898 | 81923269 | ID=MS.gene32853.t1.exon5;Parent=MS.gene32853.t1 |
| chr3.1 | CDS | 81923269 | 81923898 | 81923269 | ID=cds.MS.gene32853.t1;Parent=MS.gene32853.t1 |
| Gene Sequence |
| Protein sequence |
