AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057720.t1 MTR_4g074030 90.570 509 48 0 1 509 1 509 0.0 964
MS.gene057720.t1 MTR_8g080890 59.722 504 188 8 9 507 16 509 0.0 577
MS.gene057720.t1 MTR_8g080870 60.484 496 180 8 25 514 2 487 0.0 576
MS.gene057720.t1 MTR_8g080880 58.893 506 193 8 7 507 13 508 0.0 575
MS.gene057720.t1 MTR_8g080840 59.562 502 188 8 11 507 17 508 0.0 573
MS.gene057720.t1 MTR_4g073970 90.164 305 30 0 198 502 1 305 0.0 568
MS.gene057720.t1 MTR_8g097220 57.884 501 196 8 12 507 15 505 0.0 568
MS.gene057720.t1 MTR_4g073980 80.000 175 22 2 1 174 1 163 1.13e-94 285
MS.gene057720.t1 MTR_8g095600 33.755 237 147 4 34 269 162 389 8.60e-31 125
MS.gene057720.t1 MTR_8g095600 33.755 237 147 4 34 269 162 389 3.09e-30 124
MS.gene057720.t1 MTR_8g095600 33.755 237 147 4 34 269 162 389 4.45e-30 124
MS.gene057720.t1 MTR_8g095600 33.755 237 147 4 34 269 178 405 4.53e-30 124
MS.gene057720.t1 MTR_3g048950 28.800 500 323 15 33 508 41 531 2.88e-28 118
MS.gene057720.t1 MTR_2g010180 23.944 497 333 13 35 511 130 601 4.60e-25 109
MS.gene057720.t1 MTR_2g010180 23.944 497 333 13 35 511 144 615 5.65e-25 109
MS.gene057720.t1 MTR_2g010180 24.431 483 321 12 35 498 130 587 1.53e-24 107
MS.gene057720.t1 MTR_8g080850 63.889 72 25 1 436 507 1 71 5.04e-23 93.2
MS.gene057720.t1 MTR_3g096980 26.559 497 316 15 34 510 135 602 2.67e-19 91.7
MS.gene057720.t1 MTR_8g094740 25.049 507 321 13 29 510 131 603 4.61e-19 90.9
MS.gene057720.t1 MTR_1g082750 35.606 132 75 3 132 259 63 188 1.30e-13 73.2
MS.gene057720.t1 MTR_8g094740 27.160 243 168 3 29 267 131 368 6.92e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057720.t1 AT4G34880 57.631 498 198 3 12 507 22 508 0.0 551
MS.gene057720.t1 AT4G34880 51.004 498 185 4 12 507 22 462 6.69e-171 491
MS.gene057720.t1 AT5G07360 32.377 244 155 4 34 276 204 438 2.38e-26 113
MS.gene057720.t1 AT5G07360 32.377 244 155 4 34 276 204 438 2.38e-26 113
MS.gene057720.t1 AT3G25660 26.606 545 322 17 9 508 21 532 2.59e-25 109
MS.gene057720.t1 AT5G07360 31.967 244 149 5 34 276 204 431 5.74e-23 103
MS.gene057720.t1 AT5G64440 25.602 457 280 13 80 511 180 601 7.52e-23 102
MS.gene057720.t1 AT1G08980 38.333 120 67 2 132 250 64 177 5.33e-13 71.2

Find 124 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAATACATACTAAAAT+AGG 0.142863 4.4:+35947001 None:intergenic
TAAGCAATCTCAATCAATTT+TGG 0.178147 4.4:+35946255 None:intergenic
TTTGTAGCTTCATAATCTTT+TGG 0.242280 4.4:+35947550 None:intergenic
TGCAACAGTGGTGGATAATT+TGG 0.256591 4.4:-35947182 MS.gene057720:CDS
ATGCCATTTGGGATCTGTTT+TGG 0.263234 4.4:-35946297 MS.gene057720:CDS
AGTGACATTGGATCCTTTAT+AGG 0.290749 4.4:+35947423 None:intergenic
GGAAGCCGGTGCTATTATTC+TGG 0.293846 4.4:-35948410 MS.gene057720:CDS
TGCTTCTTGTATGTCTTCTA+TGG 0.299553 4.4:+35948726 None:intergenic
CCTCTGGCGCACCAAGCTTC+TGG 0.314745 4.4:+35948340 None:intergenic
CGCATGTGGTTTCGAAGTTA+AGG 0.337143 4.4:-35948432 MS.gene057720:CDS
AGCAGGTTCTTATGCATTGT+TGG 0.339619 4.4:-35948476 MS.gene057720:CDS
CAGGAAAAGACTAATGAGTA+TGG 0.340819 4.4:-35946540 MS.gene057720:CDS
TCAGAAATGACAAGTGGAAT+TGG 0.351271 4.4:-35946498 MS.gene057720:CDS
TAACATGGTTGCAGTTTCAT+TGG 0.354483 4.4:-35947869 MS.gene057720:CDS
GGTCTCAATGGAAAGAAAAT+AGG 0.357122 4.4:-35947472 MS.gene057720:CDS
GTATCTTGACGAGGTGAAAT+TGG 0.364768 4.4:+35947748 None:intergenic
ATACTGTCCTTAAGCAAAAC+AGG 0.367417 4.4:+35948526 None:intergenic
CAATTTGAATTCTGAAAGTA+AGG 0.368656 4.4:+35947105 None:intergenic
CGTGACCGTTCGTTGCTTCA+TGG 0.370142 4.4:-35948553 MS.gene057720:CDS
AACATGGTTGCAGTTTCATT+GGG 0.371572 4.4:-35947868 MS.gene057720:CDS
CATAAATACATACTAAAATA+GGG 0.375693 4.4:+35947002 None:intergenic
GCAGGTTCTTATGCATTGTT+GGG 0.382233 4.4:-35948475 MS.gene057720:CDS
CAGCAGCAAGTATTGGATTC+AGG 0.382460 4.4:+35948641 None:intergenic
GTGACATTGGATCCTTTATA+GGG 0.389701 4.4:+35947424 None:intergenic
CTGTTCCAGCTGGGTATGAT+AGG 0.391344 4.4:-35946326 MS.gene057720:CDS
GATAGGCAAGGAATGCCATT+TGG 0.391718 4.4:-35946309 MS.gene057720:CDS
CAATGTCACTTCCATCTTTG+AGG 0.393004 4.4:-35947410 MS.gene057720:CDS
GCAGCTAAGTTTATACCTTC+AGG 0.395988 4.4:-35947523 MS.gene057720:CDS
AGTCCTTGCGGGTCTAGCTT+TGG 0.397039 4.4:-35947913 MS.gene057720:CDS
TTTGATAAAGAAGAATCAAT+TGG 0.401016 4.4:-35946415 MS.gene057720:CDS
TCTGAAACTGTCCTGCATAT+TGG 0.401701 4.4:+35947610 None:intergenic
CTCAATAAACAAGGTCTCAA+TGG 0.407744 4.4:-35947484 MS.gene057720:CDS
CCACCGTTGGACTCACTAGT+AGG 0.419110 4.4:-35947783 MS.gene057720:CDS
CTAGTCTCTCGGAGTGGTAT+GGG 0.419677 4.4:-35948381 MS.gene057720:CDS
GAATCAATTGGATGCATTGT+TGG 0.427860 4.4:-35946403 MS.gene057720:CDS
ATAGGCAAGGAATGCCATTT+GGG 0.431951 4.4:-35946308 MS.gene057720:CDS
TCCAACACAGCAGCAAGTAT+TGG 0.433927 4.4:+35948634 None:intergenic
CATTGAGACCTTGTTTATTG+AGG 0.434452 4.4:+35947485 None:intergenic
GTGACCGTTCGTTGCTTCAT+GGG 0.437734 4.4:-35948552 MS.gene057720:CDS
GCTTCTCCAATGTTGGCAAT+TGG 0.439223 4.4:-35946366 MS.gene057720:CDS
GCATGTGGTTTCGAAGTTAA+GGG 0.442919 4.4:-35948431 MS.gene057720:CDS
TCTGCTTGATCTCGAGCGTC+AGG 0.448953 4.4:+35948604 None:intergenic
ACAACTGAATTGTGATCAGC+TGG 0.450183 4.4:+35947817 None:intergenic
CGCCAGAGGTGGATTTGCAT+TGG 0.451539 4.4:-35948326 MS.gene057720:intron
CATGTGCTTGATGTAATTGT+TGG 0.452305 4.4:-35947580 MS.gene057720:CDS
CCAGCTGGAACAGTGATTGC+AGG 0.457782 4.4:+35946336 None:intergenic
TGGAGTCTAAAAGTCCTTGC+GGG 0.463261 4.4:-35947924 MS.gene057720:CDS
TCTCCAATGTTGGCAATTGG+AGG 0.468557 4.4:-35946363 MS.gene057720:CDS
GCTGATCACAATTCAGTTGT+CGG 0.471714 4.4:-35947814 MS.gene057720:CDS
CCTGCAATCACTGTTCCAGC+TGG 0.473810 4.4:-35946336 MS.gene057720:CDS
ACTAGTCTCTCGGAGTGGTA+TGG 0.475334 4.4:-35948382 MS.gene057720:CDS
GAAGCCGGTGCTATTATTCT+GGG 0.475598 4.4:-35948409 MS.gene057720:CDS
GATAAACTCAACACTTCAGC+AGG 0.475725 4.4:-35948493 MS.gene057720:CDS
TCCAATACTTGCTGCTGTGT+TGG 0.493442 4.4:-35948635 MS.gene057720:CDS
CTCAAAGATGGAAGTGACAT+TGG 0.496520 4.4:+35947411 None:intergenic
CATGTTAGTTGCCACTGAAA+TGG 0.497625 4.4:+35947885 None:intergenic
CTCTGATGCTTCTCCAATGT+TGG 0.503905 4.4:-35946373 MS.gene057720:CDS
CGCTCGAGATCAAGCAGACA+AGG 0.505254 4.4:-35948599 MS.gene057720:CDS
TTATGCATTGTTGGGATCGA+AGG 0.506206 4.4:-35948467 MS.gene057720:CDS
ATTGAGATGGTCCTCAAAGA+TGG 0.506790 4.4:+35947399 None:intergenic
CATTTCAGTGGCAACTAACA+TGG 0.509195 4.4:-35947884 MS.gene057720:CDS
TGGAGAAGCATCAGAGCCTA+TGG 0.512587 4.4:+35946380 None:intergenic
AACCAATGCAAATCCACCTC+TGG 0.526339 4.4:+35948324 None:intergenic
TCACCTCGTCAAGATACTAT+CGG 0.527519 4.4:-35947742 MS.gene057720:CDS
CCTCCAAAACAGATCCCAAA+TGG 0.530797 4.4:+35946294 None:intergenic
ATGACTTTGAGCAATCTACC+AGG 0.532128 4.4:-35946233 MS.gene057720:CDS
TACCCTCCAATTGCCAACAT+TGG 0.534176 4.4:+35946360 None:intergenic
GAAGCTTGGTGCGCCAGAGG+TGG 0.536770 4.4:-35948337 MS.gene057720:CDS
CACCTCGTCAAGATACTATC+GGG 0.539125 4.4:-35947741 MS.gene057720:intron
GATGGGTGGCTTCCTTGCCC+TGG 0.546147 4.4:+35946215 None:intergenic
TGTTATGCAGAATCCTTATG+TGG 0.546341 4.4:-35947944 MS.gene057720:intron
TTCTTGTATGTCTTCTATGG+TGG 0.552125 4.4:+35948729 None:intergenic
GTTTCGAAGTTAAGGGAAGC+CGG 0.553804 4.4:-35948424 MS.gene057720:CDS
GGTTCCACGTGACGCGCATG+TGG 0.563814 4.4:-35948446 MS.gene057720:CDS
AATTGAAGCAATGAAGATGA+TGG 0.567872 4.4:-35946466 MS.gene057720:CDS
CACCGTTGGACTCACTAGTA+GGG 0.568104 4.4:-35947782 MS.gene057720:CDS
CTAACACTGTGCCAGAAGCT+TGG 0.569014 4.4:-35948351 MS.gene057720:CDS
CTCCAATGTTGGCAATTGGA+GGG 0.574109 4.4:-35946362 MS.gene057720:CDS
CCAGAAGCTTGGTGCGCCAG+AGG 0.575202 4.4:-35948340 MS.gene057720:CDS
TTGGATGCATTGTTGGCCAT+AGG 0.576389 4.4:-35946396 MS.gene057720:CDS
TCTGGGGAAAACTAGTCTCT+CGG 0.577590 4.4:-35948392 MS.gene057720:CDS
ATCATTTCACCACTTTGAAG+AGG 0.579767 4.4:+35947130 None:intergenic
TTTACCTCAACACATTGAGA+TGG 0.579955 4.4:+35947386 None:intergenic
CTGCAATCACTGTTCCAGCT+GGG 0.580392 4.4:-35946335 MS.gene057720:CDS
GTCGGAATCAAGCCCACCGT+TGG 0.580429 4.4:-35947796 MS.gene057720:CDS
GTTGGACTCACTAGTAGGGC+TGG 0.583241 4.4:-35947778 MS.gene057720:CDS
CCTTGCCTATCATACCCAGC+TGG 0.584675 4.4:+35946321 None:intergenic
TCATTTCACCACTTTGAAGA+GGG 0.584986 4.4:+35947131 None:intergenic
AGGAAAAGACTAATGAGTAT+GGG 0.585554 4.4:-35946539 MS.gene057720:CDS
ATCTCAGCTAGAGACTTCAC+AGG 0.586005 4.4:+35947046 None:intergenic
ATTGCATCAGAAATGACAAG+TGG 0.589208 4.4:-35946504 MS.gene057720:CDS
TGAAGTGTTGAGTTTATCAA+AGG 0.598308 4.4:+35948498 None:intergenic
AGGACCATCTCAATGTGTTG+AGG 0.598729 4.4:-35947390 MS.gene057720:intron
TAGTCTCTCGGAGTGGTATG+GGG 0.603289 4.4:-35948380 MS.gene057720:CDS
CATGTGTGAATGAAAAGCGA+TGG 0.610101 4.4:+35946197 None:intergenic
TTTCCCCAGAATAATAGCAC+CGG 0.610143 4.4:+35948405 None:intergenic
CTTTGGATCAGCCATTTCAG+TGG 0.617090 4.4:-35947896 MS.gene057720:CDS
ATATGCAAATCAAGACAAAG+AGG 0.618741 4.4:-35947205 MS.gene057720:intron
GCTAAGTTTATACCTTCAGG+TGG 0.620054 4.4:-35947520 MS.gene057720:CDS
ACAAAGAGGTGCAACAGTGG+TGG 0.621804 4.4:-35947191 MS.gene057720:CDS
GAAACCACATGCGCGTCACG+TGG 0.622406 4.4:+35948442 None:intergenic
TTGAGCAATCTACCAGGGCA+AGG 0.622543 4.4:-35946227 MS.gene057720:CDS
GTGGAGTCTAAAAGTCCTTG+CGG 0.628103 4.4:-35947925 MS.gene057720:CDS
CCAGCTGGGTATGATAGGCA+AGG 0.632114 4.4:-35946321 MS.gene057720:CDS
GTTCTCGACCCTCTTCAAAG+TGG 0.637112 4.4:-35947139 MS.gene057720:CDS
AAGACAAAGAGGTGCAACAG+TGG 0.638746 4.4:-35947194 MS.gene057720:CDS
ACATGGTTGCAGTTTCATTG+GGG 0.641691 4.4:-35947867 MS.gene057720:CDS
GATCCAAAGCTAGACCCGCA+AGG 0.645373 4.4:+35947910 None:intergenic
ACTTTGAAGAGGGTCGAGAA+CGG 0.648748 4.4:+35947141 None:intergenic
CTACTAGTGAGTCCAACGGT+GGG 0.650363 4.4:+35947784 None:intergenic
TGACTTTGAGCAATCTACCA+GGG 0.652759 4.4:-35946232 MS.gene057720:CDS
TACTGTCCTTAAGCAAAACA+GGG 0.655683 4.4:+35948527 None:intergenic
AAGCAATTCCTCAATAAACA+AGG 0.659450 4.4:-35947493 MS.gene057720:CDS
ATGTGTGAATGAAAAGCGAT+GGG 0.665768 4.4:+35946198 None:intergenic
AATTGCTTATAACCACCTGA+AGG 0.670396 4.4:+35947508 None:intergenic
CCTACTAGTGAGTCCAACGG+TGG 0.675556 4.4:+35947783 None:intergenic
AAGCCGGTGCTATTATTCTG+GGG 0.692401 4.4:-35948408 MS.gene057720:CDS
TCATTGGGGACAGAAACTGA+TGG 0.695584 4.4:-35947853 MS.gene057720:CDS
GGATCCCATGAAGCAACGAA+CGG 0.695610 4.4:+35948548 None:intergenic
AGCCCTACTAGTGAGTCCAA+CGG 0.702539 4.4:+35947780 None:intergenic
CAACTGAATTGTGATCAGCT+GGG 0.702745 4.4:+35947818 None:intergenic
TGTGAATGAAAAGCGATGGG+TGG 0.708050 4.4:+35946201 None:intergenic
TACCCGATAGTATCTTGACG+AGG 0.755148 4.4:+35947739 None:intergenic
GGAAAACTAGTCTCTCGGAG+TGG 0.758159 4.4:-35948387 MS.gene057720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAAATACATACTAAAAT+AGG + chr4.4:35948013-35948032 None:intergenic 15.0%
!! ATATAATAAAACAGACAAAA+TGG + chr4.4:35947788-35947807 None:intergenic 15.0%
!! CATAAATACATACTAAAATA+GGG + chr4.4:35948012-35948031 None:intergenic 15.0%
!!! GATTTAGAATTTAATTACAT+TGG - chr4.4:35946901-35946920 MS.gene057720:intron 15.0%
!! AAATTTAGCATTAAATAGAG+TGG - chr4.4:35946929-35946948 MS.gene057720:intron 20.0%
!! AATACTATAAAACACTAACA+CGG + chr4.4:35948404-35948423 None:intergenic 20.0%
!! CTTATGCATAATACATAATA+GGG + chr4.4:35948183-35948202 None:intergenic 20.0%
!! TAACATGTTAACTTTGATAT+TGG - chr4.4:35946789-35946808 MS.gene057720:intron 20.0%
!! TCTTATGCATAATACATAAT+AGG + chr4.4:35948184-35948203 None:intergenic 20.0%
!! TTTGATAAAGAAGAATCAAT+TGG - chr4.4:35948596-35948615 MS.gene057720:CDS 20.0%
!!! ATTATAATTAACTTGAGCTA+AGG + chr4.4:35948104-35948123 None:intergenic 20.0%
!!! ATTCCCACATTTAAAATTAA+AGG + chr4.4:35947357-35947376 None:intergenic 20.0%
!!! TATGTATATATATTTTGCAC+AGG - chr4.4:35947378-35947397 MS.gene057720:intron 20.0%
!!! TTCCCACATTTAAAATTAAA+GGG + chr4.4:35947356-35947375 None:intergenic 20.0%
! GTCATTCAAAAAGAATTAAG+AGG + chr4.4:35948040-35948059 None:intergenic 25.0%
! TGATATGATAACTTTGACAT+TGG - chr4.4:35946983-35947002 MS.gene057720:intron 25.0%
! TTGAATATAACTACATGTGT+CGG + chr4.4:35948337-35948356 None:intergenic 25.0%
!! CAATTTGAATTCTGAAAGTA+AGG + chr4.4:35947909-35947928 None:intergenic 25.0%
!! GTGTTTTATAGTATTTTGCT+CGG - chr4.4:35948409-35948428 MS.gene057720:CDS 25.0%
!! TAAGCAATCTCAATCAATTT+TGG + chr4.4:35948759-35948778 None:intergenic 25.0%
!! TTGTAGCTTCATAATCTTTT+GGG + chr4.4:35947463-35947482 None:intergenic 25.0%
!! TTTGTAGCTTCATAATCTTT+TGG + chr4.4:35947464-35947483 None:intergenic 25.0%
!!! AATCTCAATCAATTTTGGTT+CGG + chr4.4:35948754-35948773 None:intergenic 25.0%
!!! TGCCCTTTAATTTTAAATGT+GGG - chr4.4:35947351-35947370 MS.gene057720:intron 25.0%
!!! TTGCCCTTTAATTTTAAATG+TGG - chr4.4:35947350-35947369 MS.gene057720:intron 25.0%
AAGCAATTCCTCAATAAACA+AGG - chr4.4:35947518-35947537 MS.gene057720:CDS 30.0%
AATTCCTCATGAGATAGAAT+AGG - chr4.4:35946734-35946753 MS.gene057720:intron 30.0%
AATTGAAGCAATGAAGATGA+TGG - chr4.4:35948545-35948564 MS.gene057720:CDS 30.0%
AGGAAAAGACTAATGAGTAT+GGG - chr4.4:35948472-35948491 MS.gene057720:CDS 30.0%
ATATGCAAATCAAGACAAAG+AGG - chr4.4:35947806-35947825 MS.gene057720:CDS 30.0%
CCTTTATAGGGAATCAAAAA+TGG + chr4.4:35947578-35947597 None:intergenic 30.0%
TTTGGTTGTTGAACTGTTTA+TGG - chr4.4:35948437-35948456 MS.gene057720:CDS 30.0%
! CTTTTACTTACACAGAATCA+AGG - chr4.4:35946346-35946365 MS.gene057720:CDS 30.0%
! GAAAGAAAATAGGTGTTTTG+AGG - chr4.4:35947549-35947568 MS.gene057720:CDS 30.0%
! GTATTTTGCTCGGTTAAATT+TGG - chr4.4:35948419-35948438 MS.gene057720:CDS 30.0%
! GTTTATGGTTTTCTTGTAAC+AGG - chr4.4:35948452-35948471 MS.gene057720:CDS 30.0%
!! CCATTTTTGATTCCCTATAA+AGG - chr4.4:35947575-35947594 MS.gene057720:CDS 30.0%
!! TGAAGTGTTGAGTTTATCAA+AGG + chr4.4:35946516-35946535 None:intergenic 30.0%
AACATGGTTGCAGTTTCATT+GGG - chr4.4:35947143-35947162 MS.gene057720:CDS 35.0%
AATTGCTTATAACCACCTGA+AGG + chr4.4:35947506-35947525 None:intergenic 35.0%
AGAATCAATGACCATTTGAG+GGG + chr4.4:35947679-35947698 None:intergenic 35.0%
AGTGACATTGGATCCTTTAT+AGG + chr4.4:35947591-35947610 None:intergenic 35.0%
ATACTGTCCTTAAGCAAAAC+AGG + chr4.4:35946488-35946507 None:intergenic 35.0%
ATGGAGCAGTTGTCAAAAAA+TGG - chr4.4:35948564-35948583 MS.gene057720:CDS 35.0%
ATGTGTGAATGAAAAGCGAT+GGG + chr4.4:35948816-35948835 None:intergenic 35.0%
ATTGCATCAGAAATGACAAG+TGG - chr4.4:35948507-35948526 MS.gene057720:CDS 35.0%
CAATCCTATTCTATCTCATG+AGG + chr4.4:35946741-35946760 None:intergenic 35.0%
CAGGAAAAGACTAATGAGTA+TGG - chr4.4:35948471-35948490 MS.gene057720:CDS 35.0%
CATGTGCTTGATGTAATTGT+TGG - chr4.4:35947431-35947450 MS.gene057720:CDS 35.0%
CTCAATAAACAAGGTCTCAA+TGG - chr4.4:35947527-35947546 MS.gene057720:CDS 35.0%
GAATCAATTGGATGCATTGT+TGG - chr4.4:35948608-35948627 MS.gene057720:CDS 35.0%
GAGAATCAATGACCATTTGA+GGG + chr4.4:35947680-35947699 None:intergenic 35.0%
GGTCTCAATGGAAAGAAAAT+AGG - chr4.4:35947539-35947558 MS.gene057720:CDS 35.0%
GTGACATTGGATCCTTTATA+GGG + chr4.4:35947590-35947609 None:intergenic 35.0%
TAACATGGTTGCAGTTTCAT+TGG - chr4.4:35947142-35947161 MS.gene057720:CDS 35.0%
TACTGTCCTTAAGCAAAACA+GGG + chr4.4:35946487-35946506 None:intergenic 35.0%
TATTATCCTAGTGTCATGTC+TGG - chr4.4:35948375-35948394 MS.gene057720:CDS 35.0%
TCAGAAATGACAAGTGGAAT+TGG - chr4.4:35948513-35948532 MS.gene057720:CDS 35.0%
TGAGAATCAATGACCATTTG+AGG + chr4.4:35947681-35947700 None:intergenic 35.0%
TGCTTCTTGTATGTCTTCTA+TGG + chr4.4:35946288-35946307 None:intergenic 35.0%
TGGAGCAGTTGTCAAAAAAT+GGG - chr4.4:35948565-35948584 MS.gene057720:CDS 35.0%
TGTTATGCAGAATCCTTATG+TGG - chr4.4:35947067-35947086 MS.gene057720:CDS 35.0%
TTCTTGTATGTCTTCTATGG+TGG + chr4.4:35946285-35946304 None:intergenic 35.0%
TTTACCTCAACACATTGAGA+TGG + chr4.4:35947628-35947647 None:intergenic 35.0%
! ATCATTTCACCACTTTGAAG+AGG + chr4.4:35947884-35947903 None:intergenic 35.0%
! CATTGAGACCTTGTTTATTG+AGG + chr4.4:35947529-35947548 None:intergenic 35.0%
! TCATTTCACCACTTTGAAGA+GGG + chr4.4:35947883-35947902 None:intergenic 35.0%
AAAGGGCAAAACTACATCAG+AGG + chr4.4:35947339-35947358 None:intergenic 40.0%
ACAACTGAATTGTGATCAGC+TGG + chr4.4:35947197-35947216 None:intergenic 40.0%
ACATGGTTGCAGTTTCATTG+GGG - chr4.4:35947144-35947163 MS.gene057720:CDS 40.0%
AGCAGGTTCTTATGCATTGT+TGG - chr4.4:35946535-35946554 MS.gene057720:CDS 40.0%
ATGACTTTGAGCAATCTACC+AGG - chr4.4:35948778-35948797 MS.gene057720:CDS 40.0%
ATTGAGATGGTCCTCAAAGA+TGG + chr4.4:35947615-35947634 None:intergenic 40.0%
CAACTGAATTGTGATCAGCT+GGG + chr4.4:35947196-35947215 None:intergenic 40.0%
CATGTGTGAATGAAAAGCGA+TGG + chr4.4:35948817-35948836 None:intergenic 40.0%
CATGTTAGTTGCCACTGAAA+TGG + chr4.4:35947129-35947148 None:intergenic 40.0%
CATTTCAGTGGCAACTAACA+TGG - chr4.4:35947127-35947146 MS.gene057720:CDS 40.0%
CTCAAAGATGGAAGTGACAT+TGG + chr4.4:35947603-35947622 None:intergenic 40.0%
GATAAACTCAACACTTCAGC+AGG - chr4.4:35946518-35946537 MS.gene057720:CDS 40.0%
GCAGCTAAGTTTATACCTTC+AGG - chr4.4:35947488-35947507 MS.gene057720:CDS 40.0%
GCAGGTTCTTATGCATTGTT+GGG - chr4.4:35946536-35946555 MS.gene057720:CDS 40.0%
GCATGTGGTTTCGAAGTTAA+GGG - chr4.4:35946580-35946599 MS.gene057720:intron 40.0%
GCTAAGGTATAAGCAGTTTG+AGG + chr4.4:35948088-35948107 None:intergenic 40.0%
GCTAAGTTTATACCTTCAGG+TGG - chr4.4:35947491-35947510 MS.gene057720:CDS 40.0%
GCTGATCACAATTCAGTTGT+CGG - chr4.4:35947197-35947216 MS.gene057720:intron 40.0%
GTATCTTGACGAGGTGAAAT+TGG + chr4.4:35947266-35947285 None:intergenic 40.0%
TCACCTCGTCAAGATACTAT+CGG - chr4.4:35947269-35947288 MS.gene057720:intron 40.0%
TGACTTTGAGCAATCTACCA+GGG - chr4.4:35948779-35948798 MS.gene057720:CDS 40.0%
TTATGCATTGTTGGGATCGA+AGG - chr4.4:35946544-35946563 MS.gene057720:intron 40.0%
TTTCCCCAGAATAATAGCAC+CGG + chr4.4:35946609-35946628 None:intergenic 40.0%
! ATAGGCAAGGAATGCCATTT+GGG - chr4.4:35948703-35948722 MS.gene057720:CDS 40.0%
! CAATGTCACTTCCATCTTTG+AGG - chr4.4:35947601-35947620 MS.gene057720:CDS 40.0%
! GGACTTTTAGACTCCACATA+AGG + chr4.4:35947083-35947102 None:intergenic 40.0%
! TCTGAAACTGTCCTGCATAT+TGG + chr4.4:35947404-35947423 None:intergenic 40.0%
!! ATGCCATTTGGGATCTGTTT+TGG - chr4.4:35948714-35948733 MS.gene057720:CDS 40.0%
!! CATTTGGGATCTGTTTTGGA+GGG - chr4.4:35948718-35948737 MS.gene057720:CDS 40.0%
!! TGCAACAGTGGTGGATAATT+TGG - chr4.4:35947829-35947848 MS.gene057720:CDS 40.0%
!!! ATCTGTTTTGGAGGGTTGAA+GGG - chr4.4:35948726-35948745 MS.gene057720:CDS 40.0%
AACCAATGCAAATCCACCTC+TGG + chr4.4:35946690-35946709 None:intergenic 45.0%
AGGACCATCTCAATGTGTTG+AGG - chr4.4:35947621-35947640 MS.gene057720:intron 45.0%
ATCTCAGCTAGAGACTTCAC+AGG + chr4.4:35947968-35947987 None:intergenic 45.0%
CACCTCGTCAAGATACTATC+GGG - chr4.4:35947270-35947289 MS.gene057720:intron 45.0%
CATAACACACACCCCTCAAA+TGG - chr4.4:35947665-35947684 MS.gene057720:intron 45.0%
CCTCCAAAACAGATCCCAAA+TGG + chr4.4:35948720-35948739 None:intergenic 45.0%
CGCATGTGGTTTCGAAGTTA+AGG - chr4.4:35946579-35946598 MS.gene057720:intron 45.0%
CTCCAATGTTGGCAATTGGA+GGG - chr4.4:35948649-35948668 MS.gene057720:CDS 45.0%
CTCTGATGCTTCTCCAATGT+TGG - chr4.4:35948638-35948657 MS.gene057720:CDS 45.0%
CTTTGGATCAGCCATTTCAG+TGG - chr4.4:35947115-35947134 MS.gene057720:CDS 45.0%
GATAGGCAAGGAATGCCATT+TGG - chr4.4:35948702-35948721 MS.gene057720:CDS 45.0%
GCTTCTCCAATGTTGGCAAT+TGG - chr4.4:35948645-35948664 MS.gene057720:CDS 45.0%
GTGGAGTCTAAAAGTCCTTG+CGG - chr4.4:35947086-35947105 MS.gene057720:CDS 45.0%
GTTTCGAAGTTAAGGGAAGC+CGG - chr4.4:35946587-35946606 MS.gene057720:intron 45.0%
TACCCGATAGTATCTTGACG+AGG + chr4.4:35947275-35947294 None:intergenic 45.0%
TACCCTCCAATTGCCAACAT+TGG + chr4.4:35948654-35948673 None:intergenic 45.0%
TCATTGGGGACAGAAACTGA+TGG - chr4.4:35947158-35947177 MS.gene057720:CDS 45.0%
TCCAACACAGCAGCAAGTAT+TGG + chr4.4:35946380-35946399 None:intergenic 45.0%
TCTCCAATGTTGGCAATTGG+AGG - chr4.4:35948648-35948667 MS.gene057720:CDS 45.0%
TGGAGTCTAAAAGTCCTTGC+GGG - chr4.4:35947087-35947106 MS.gene057720:CDS 45.0%
TGTGAATGAAAAGCGATGGG+TGG + chr4.4:35948813-35948832 None:intergenic 45.0%
TTGGATGCATTGTTGGCCAT+AGG - chr4.4:35948615-35948634 MS.gene057720:CDS 45.0%
! AAGACAAAGAGGTGCAACAG+TGG - chr4.4:35947817-35947836 MS.gene057720:CDS 45.0%
! ACTTTGAAGAGGGTCGAGAA+CGG + chr4.4:35947873-35947892 None:intergenic 45.0%
! TAACTACATGTGTCGGTGTC+AGG + chr4.4:35948330-35948349 None:intergenic 45.0%
! TCCAATACTTGCTGCTGTGT+TGG - chr4.4:35946376-35946395 MS.gene057720:CDS 45.0%
! TCTGGGGAAAACTAGTCTCT+CGG - chr4.4:35946619-35946638 MS.gene057720:intron 45.0%
! TGGGATCCCTGTTTTGCTTA+AGG - chr4.4:35946478-35946497 MS.gene057720:CDS 45.0%
! TTTTGCACAGGCCAATATGC+AGG - chr4.4:35947390-35947409 MS.gene057720:intron 45.0%
!! AAGCCGGTGCTATTATTCTG+GGG - chr4.4:35946603-35946622 MS.gene057720:intron 45.0%
!! CAGCAGCAAGTATTGGATTC+AGG + chr4.4:35946373-35946392 None:intergenic 45.0%
!! CCATTTGGGATCTGTTTTGG+AGG - chr4.4:35948717-35948736 MS.gene057720:CDS 45.0%
!! GAAGCCGGTGCTATTATTCT+GGG - chr4.4:35946602-35946621 MS.gene057720:intron 45.0%
!!! GATCTGTTTTGGAGGGTTGA+AGG - chr4.4:35948725-35948744 MS.gene057720:CDS 45.0%
AGCCCTACTAGTGAGTCCAA+CGG + chr4.4:35947234-35947253 None:intergenic 50.0%
CACCGTTGGACTCACTAGTA+GGG - chr4.4:35947229-35947248 MS.gene057720:intron 50.0%
CTAACACTGTGCCAGAAGCT+TGG - chr4.4:35946660-35946679 MS.gene057720:intron 50.0%
CTACTAGTGAGTCCAACGGT+GGG + chr4.4:35947230-35947249 None:intergenic 50.0%
CTAGTCTCTCGGAGTGGTAT+GGG - chr4.4:35946630-35946649 MS.gene057720:intron 50.0%
CTGCAATCACTGTTCCAGCT+GGG - chr4.4:35948676-35948695 MS.gene057720:CDS 50.0%
CTGTTCCAGCTGGGTATGAT+AGG - chr4.4:35948685-35948704 MS.gene057720:CDS 50.0%
GGATCCCATGAAGCAACGAA+CGG + chr4.4:35946466-35946485 None:intergenic 50.0%
GTGACCGTTCGTTGCTTCAT+GGG - chr4.4:35946459-35946478 MS.gene057720:CDS 50.0%
GTTCTCGACCCTCTTCAAAG+TGG - chr4.4:35947872-35947891 MS.gene057720:CDS 50.0%
TAGTCTCTCGGAGTGGTATG+GGG - chr4.4:35946631-35946650 MS.gene057720:intron 50.0%
TTGAGCAATCTACCAGGGCA+AGG - chr4.4:35948784-35948803 MS.gene057720:CDS 50.0%
! ACAAAGAGGTGCAACAGTGG+TGG - chr4.4:35947820-35947839 MS.gene057720:CDS 50.0%
! ACTAGTCTCTCGGAGTGGTA+TGG - chr4.4:35946629-35946648 MS.gene057720:intron 50.0%
! GGAAAACTAGTCTCTCGGAG+TGG - chr4.4:35946624-35946643 MS.gene057720:intron 50.0%
!! GGAAGCCGGTGCTATTATTC+TGG - chr4.4:35946601-35946620 MS.gene057720:intron 50.0%
!! TGGAGAAGCATCAGAGCCTA+TGG + chr4.4:35948634-35948653 None:intergenic 50.0%
CCACCGTTGGACTCACTAGT+AGG - chr4.4:35947228-35947247 MS.gene057720:intron 55.0%
CCAGCTGGAACAGTGATTGC+AGG + chr4.4:35948678-35948697 None:intergenic 55.0%
CCAGCTGGGTATGATAGGCA+AGG - chr4.4:35948690-35948709 MS.gene057720:CDS 55.0%
CCTACTAGTGAGTCCAACGG+TGG + chr4.4:35947231-35947250 None:intergenic 55.0%
CCTGCAATCACTGTTCCAGC+TGG - chr4.4:35948675-35948694 MS.gene057720:CDS 55.0%
CCTTGCCTATCATACCCAGC+TGG + chr4.4:35948693-35948712 None:intergenic 55.0%
CGCTCGAGATCAAGCAGACA+AGG - chr4.4:35946412-35946431 MS.gene057720:CDS 55.0%
CGGACACCAGACATGACACT+AGG + chr4.4:35948384-35948403 None:intergenic 55.0%
CGTGACCGTTCGTTGCTTCA+TGG - chr4.4:35946458-35946477 MS.gene057720:CDS 55.0%
GATCCAAAGCTAGACCCGCA+AGG + chr4.4:35947104-35947123 None:intergenic 55.0%
GTTGGACTCACTAGTAGGGC+TGG - chr4.4:35947233-35947252 MS.gene057720:intron 55.0%
TCTGCTTGATCTCGAGCGTC+AGG + chr4.4:35946410-35946429 None:intergenic 55.0%
! AGTCCTTGCGGGTCTAGCTT+TGG - chr4.4:35947098-35947117 MS.gene057720:CDS 55.0%
! CGCCAGAGGTGGATTTGCAT+TGG - chr4.4:35946685-35946704 MS.gene057720:intron 55.0%
GAAACCACATGCGCGTCACG+TGG + chr4.4:35946572-35946591 None:intergenic 60.0%
GTCGGAATCAAGCCCACCGT+TGG - chr4.4:35947215-35947234 MS.gene057720:intron 60.0%
CCTCTGGCGCACCAAGCTTC+TGG + chr4.4:35946674-35946693 None:intergenic 65.0%
GATGGGTGGCTTCCTTGCCC+TGG + chr4.4:35948799-35948818 None:intergenic 65.0%
GGTTCCACGTGACGCGCATG+TGG - chr4.4:35946565-35946584 MS.gene057720:intron 65.0%
!! CCAGAAGCTTGGTGCGCCAG+AGG - chr4.4:35946671-35946690 MS.gene057720:intron 65.0%
!! GAAGCTTGGTGCGCCAGAGG+TGG - chr4.4:35946674-35946693 MS.gene057720:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 35946185 35948848 35946185 ID=MS.gene057720
chr4.4 mRNA 35946185 35948848 35946185 ID=MS.gene057720.t1;Parent=MS.gene057720
chr4.4 exon 35948327 35948848 35948327 ID=MS.gene057720.t1.exon1;Parent=MS.gene057720.t1
chr4.4 CDS 35948327 35948848 35948327 ID=cds.MS.gene057720.t1;Parent=MS.gene057720.t1
chr4.4 exon 35947742 35947956 35947742 ID=MS.gene057720.t1.exon2;Parent=MS.gene057720.t1
chr4.4 CDS 35947742 35947956 35947742 ID=cds.MS.gene057720.t1;Parent=MS.gene057720.t1
chr4.4 exon 35947391 35947633 35947391 ID=MS.gene057720.t1.exon3;Parent=MS.gene057720.t1
chr4.4 CDS 35947391 35947633 35947391 ID=cds.MS.gene057720.t1;Parent=MS.gene057720.t1
chr4.4 exon 35947015 35947213 35947015 ID=MS.gene057720.t1.exon4;Parent=MS.gene057720.t1
chr4.4 CDS 35947015 35947213 35947015 ID=cds.MS.gene057720.t1;Parent=MS.gene057720.t1
chr4.4 exon 35946185 35946559 35946185 ID=MS.gene057720.t1.exon5;Parent=MS.gene057720.t1
chr4.4 CDS 35946185 35946559 35946185 ID=cds.MS.gene057720.t1;Parent=MS.gene057720.t1
Gene Sequence

>MS.gene057720

ATGGCAACAAGAAGCAAAGTTTGTATTTCTCTAATATTATTTGCAGTAGCATTTGTCAATGCAATAGATGAATGTTCAGATTTTGCAATCGATGAATCCACCATAGAAGACATACAAGAAGCATTCACACGAAACAAACTCACTTCAAGACAGCTCGTTGACTTTTACTTACACAGAATCAAGGTCCTGAATCCAATACTTGCTGCTGTGTTGGAACTCAATCCTGACGCTCGAGATCAAGCAGACAAGGCTGATTGTGAGAGACGAGAAGATCGTGACCGTTCGTTGCTTCATGGGATCCCTGTTTTGCTTAAGGACAGTATTGCAACCTTTGATAAACTCAACACTTCAGCAGGTTCTTATGCATTGTTGGGATCGAAGGTTCCACGTGACGCGCATGTGGTTTCGAAGTTAAGGGAAGCCGGTGCTATTATTCTGGGGAAAACTAGTCTCTCGGAGTGGTATGGGGTTCGTTCTAACACTGTGCCAGAAGCTTGGTGCGCCAGAGGTGGATTTGCATTGGTTAGTACTTAACTACATTGTCTATAAAATTCCTCATGAGATAGAATAGGATTGAAGATTGTCACAATATAAATGAAAATTGTAACATGTTAACTTTGATATTGGTTGATCTAATTTGAAGTATTGTATAACTGATTAGTAAATATTATGAGTATATAACAGATTTGATTAGTTATGTAATACAAAATCTTACTGATTTAGAATTTAATTACATTGGCTATCAAATTTAGCATTAAATAGAGTGGAATTTCGATTTCACAGTATAAATGACAATTGTGATATGATAACTTTGACATTGGTTGATTTAATTTGAAGTATGTTATCACTGATTTATAAAAGATGAATTTAAAAGTTATGTTATGTTATGCAGAATCCTTATGTGGAGTCTAAAAGTCCTTGCGGGTCTAGCTTTGGATCAGCCATTTCAGTGGCAACTAACATGGTTGCAGTTTCATTGGGGACAGAAACTGATGGCTCTATTATCTGCCCAGCTGATCACAATTCAGTTGTCGGAATCAAGCCCACCGTTGGACTCACTAGTAGGGCTGGTGTCATACCAATTTCACCTCGTCAAGATACTATCGGGTAAGCGTTAGACATTTTAAAACATAAATAATTAAGTTAAAGTACCTCTGATGTAGTTTTGCCCTTTAATTTTAAATGTGGGAATGTATGTATATATATTTTGCACAGGCCAATATGCAGGACAGTTTCAGATGCAGTTCATGTGCTTGATGTAATTGTTGGATTTGACCCAAAAGATTATGAAGCTACAAAATCAGCAGCTAAGTTTATACCTTCAGGTGGTTATAAGCAATTCCTCAATAAACAAGGTCTCAATGGAAAGAAAATAGGTGTTTTGAGGAATCCATTTTTGATTCCCTATAAAGGATCCAATGTCACTTCCATCTTTGAGGACCATCTCAATGTGTTGAGGTAAAAATACAATATACTAATTCATAACACACACCCCTCAAATGGTCATTGATTCTCACTAGCACACACGACGACACTATATTCATACTACAGACAATAAAATGAAAATAAAATAATATCAAATTTTATTGTAACACTAACACCATTTTGTCTGTTTTATTATATATGCAAATCAAGACAAAGAGGTGCAACAGTGGTGGATAATTTGGAAGTAGAAAATTTAAGCACCGTTCTCGACCCTCTTCAAAGTGGTGAAATGATAACCTTACTTTCAGAATTCAAATTGTACATCAACAAATATCTGCAAGAGCTCACTTATTCTCCTGTGAAGTCTCTAGCTGAGATTATAGAATACAACATCAACAACCCTATTTTAGTATGTATTTATGTATATCCTCTTAATTCTTTTTGAATGACAAATGTTAATAATTAGTTGTTTTCTCCTCAAACTGCTTATACCTTAGCTCAAGTTAATTATAATTTTAAATATTTACATTTATGTTTACAAATTTTATCTAAATAAACTTTTATAACTATCCCTATTATGTATTATGCATAAGATACTTATATCACATAAAATCGATGTATCATTTGAAAAGCATTTGAATAGAACTTTTAACACAGTATTTTGATTCATAACACTGACACTTTACATTGAATGTTTTTGTGTCATACATGTCAATGCCTGACACCGACACATGTAGTTATATTCAATAATTTATCATCACAAACTATTATCCTAGTGTCATGTCTGGTGTCCGTGTTAGTGTTTTATAGTATTTTGCTCGGTTAAATTTGGTTGTTGAACTGTTTATGGTTTTCTTGTAACAGGAAAAGACTAATGAGTATGGGCAAGATTTTTTTATTGCATCAGAAATGACAAGTGGAATTGGAAAAAGTGAAATTGAAGCAATGAAGATGATGGAGCAGTTGTCAAAAAATGGGTTTGAGAGTTTGATAAAGAAGAATCAATTGGATGCATTGTTGGCCATAGGCTCTGATGCTTCTCCAATGTTGGCAATTGGAGGGTATCCTGCAATCACTGTTCCAGCTGGGTATGATAGGCAAGGAATGCCATTTGGGATCTGTTTTGGAGGGTTGAAGGGAACCGAACCAAAATTGATTGAGATTGCTTATGACTTTGAGCAATCTACCAGGGCAAGGAAGCCACCCATCGCTTTTCATTCACACATGAAAAAAATTTAA

Protein sequence

>MS.gene057720.t1

MATRSKVCISLILFAVAFVNAIDECSDFAIDESTIEDIQEAFTRNKLTSRQLVDFYLHRIKVLNPILAAVLELNPDARDQADKADCERREDRDRSLLHGIPVLLKDSIATFDKLNTSAGSYALLGSKVPRDAHVVSKLREAGAIILGKTSLSEWYGVRSNTVPEAWCARGGFALNPYVESKSPCGSSFGSAISVATNMVAVSLGTETDGSIICPADHNSVVGIKPTVGLTSRAGVIPISPRQDTIGPICRTVSDAVHVLDVIVGFDPKDYEATKSAAKFIPSGGYKQFLNKQGLNGKKIGVLRNPFLIPYKGSNVTSIFEDHLNVLRQRGATVVDNLEVENLSTVLDPLQSGEMITLLSEFKLYINKYLQELTYSPVKSLAEIIEYNINNPILEKTNEYGQDFFIASEMTSGIGKSEIEAMKMMEQLSKNGFESLIKKNQLDALLAIGSDASPMLAIGGYPAITVPAGYDRQGMPFGICFGGLKGTEPKLIEIAYDFEQSTRARKPPIAFHSHMKKI