Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057720.t1 | XP_013456501.1 | 90.6 | 509 | 48 | 0 | 1 | 509 | 1 | 509 | 1.40E-264 | 921.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057720.t1 | A0A1P8B760 | 55.8 | 498 | 207 | 3 | 12 | 507 | 22 | 508 | 1.8e-146 | 520.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057720.t1 | A0A072ULF6 | 90.6 | 509 | 48 | 0 | 1 | 509 | 1 | 509 | 1.0e-264 | 921.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057720 | MS.gene065973 | 0.809706 | 1.66E-50 | -1.69E-46 |
MS.gene057720 | MS.gene37350 | 0.815455 | 9.17E-52 | -1.69E-46 |
MS.gene057720 | MS.gene54667 | 0.8019 | 7.24E-49 | -1.69E-46 |
MS.gene057720 | MS.gene90966 | 0.807079 | 6.02E-50 | -1.69E-46 |
MS.gene057720 | MS.gene96226 | 0.81017 | 1.32E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057720.t1 | MTR_4g074030 | 90.570 | 509 | 48 | 0 | 1 | 509 | 1 | 509 | 0.0 | 964 |
MS.gene057720.t1 | MTR_8g080890 | 59.722 | 504 | 188 | 8 | 9 | 507 | 16 | 509 | 0.0 | 577 |
MS.gene057720.t1 | MTR_8g080870 | 60.484 | 496 | 180 | 8 | 25 | 514 | 2 | 487 | 0.0 | 576 |
MS.gene057720.t1 | MTR_8g080880 | 58.893 | 506 | 193 | 8 | 7 | 507 | 13 | 508 | 0.0 | 575 |
MS.gene057720.t1 | MTR_8g080840 | 59.562 | 502 | 188 | 8 | 11 | 507 | 17 | 508 | 0.0 | 573 |
MS.gene057720.t1 | MTR_4g073970 | 90.164 | 305 | 30 | 0 | 198 | 502 | 1 | 305 | 0.0 | 568 |
MS.gene057720.t1 | MTR_8g097220 | 57.884 | 501 | 196 | 8 | 12 | 507 | 15 | 505 | 0.0 | 568 |
MS.gene057720.t1 | MTR_4g073980 | 80.000 | 175 | 22 | 2 | 1 | 174 | 1 | 163 | 1.13e-94 | 285 |
MS.gene057720.t1 | MTR_8g095600 | 33.755 | 237 | 147 | 4 | 34 | 269 | 162 | 389 | 8.60e-31 | 125 |
MS.gene057720.t1 | MTR_8g095600 | 33.755 | 237 | 147 | 4 | 34 | 269 | 162 | 389 | 3.09e-30 | 124 |
MS.gene057720.t1 | MTR_8g095600 | 33.755 | 237 | 147 | 4 | 34 | 269 | 162 | 389 | 4.45e-30 | 124 |
MS.gene057720.t1 | MTR_8g095600 | 33.755 | 237 | 147 | 4 | 34 | 269 | 178 | 405 | 4.53e-30 | 124 |
MS.gene057720.t1 | MTR_3g048950 | 28.800 | 500 | 323 | 15 | 33 | 508 | 41 | 531 | 2.88e-28 | 118 |
MS.gene057720.t1 | MTR_2g010180 | 23.944 | 497 | 333 | 13 | 35 | 511 | 130 | 601 | 4.60e-25 | 109 |
MS.gene057720.t1 | MTR_2g010180 | 23.944 | 497 | 333 | 13 | 35 | 511 | 144 | 615 | 5.65e-25 | 109 |
MS.gene057720.t1 | MTR_2g010180 | 24.431 | 483 | 321 | 12 | 35 | 498 | 130 | 587 | 1.53e-24 | 107 |
MS.gene057720.t1 | MTR_8g080850 | 63.889 | 72 | 25 | 1 | 436 | 507 | 1 | 71 | 5.04e-23 | 93.2 |
MS.gene057720.t1 | MTR_3g096980 | 26.559 | 497 | 316 | 15 | 34 | 510 | 135 | 602 | 2.67e-19 | 91.7 |
MS.gene057720.t1 | MTR_8g094740 | 25.049 | 507 | 321 | 13 | 29 | 510 | 131 | 603 | 4.61e-19 | 90.9 |
MS.gene057720.t1 | MTR_1g082750 | 35.606 | 132 | 75 | 3 | 132 | 259 | 63 | 188 | 1.30e-13 | 73.2 |
MS.gene057720.t1 | MTR_8g094740 | 27.160 | 243 | 168 | 3 | 29 | 267 | 131 | 368 | 6.92e-13 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057720.t1 | AT4G34880 | 57.631 | 498 | 198 | 3 | 12 | 507 | 22 | 508 | 0.0 | 551 |
MS.gene057720.t1 | AT4G34880 | 51.004 | 498 | 185 | 4 | 12 | 507 | 22 | 462 | 6.69e-171 | 491 |
MS.gene057720.t1 | AT5G07360 | 32.377 | 244 | 155 | 4 | 34 | 276 | 204 | 438 | 2.38e-26 | 113 |
MS.gene057720.t1 | AT5G07360 | 32.377 | 244 | 155 | 4 | 34 | 276 | 204 | 438 | 2.38e-26 | 113 |
MS.gene057720.t1 | AT3G25660 | 26.606 | 545 | 322 | 17 | 9 | 508 | 21 | 532 | 2.59e-25 | 109 |
MS.gene057720.t1 | AT5G07360 | 31.967 | 244 | 149 | 5 | 34 | 276 | 204 | 431 | 5.74e-23 | 103 |
MS.gene057720.t1 | AT5G64440 | 25.602 | 457 | 280 | 13 | 80 | 511 | 180 | 601 | 7.52e-23 | 102 |
MS.gene057720.t1 | AT1G08980 | 38.333 | 120 | 67 | 2 | 132 | 250 | 64 | 177 | 5.33e-13 | 71.2 |
Find 124 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATAAATACATACTAAAAT+AGG | 0.142863 | 4.4:+35947001 | None:intergenic |
TAAGCAATCTCAATCAATTT+TGG | 0.178147 | 4.4:+35946255 | None:intergenic |
TTTGTAGCTTCATAATCTTT+TGG | 0.242280 | 4.4:+35947550 | None:intergenic |
TGCAACAGTGGTGGATAATT+TGG | 0.256591 | 4.4:-35947182 | MS.gene057720:CDS |
ATGCCATTTGGGATCTGTTT+TGG | 0.263234 | 4.4:-35946297 | MS.gene057720:CDS |
AGTGACATTGGATCCTTTAT+AGG | 0.290749 | 4.4:+35947423 | None:intergenic |
GGAAGCCGGTGCTATTATTC+TGG | 0.293846 | 4.4:-35948410 | MS.gene057720:CDS |
TGCTTCTTGTATGTCTTCTA+TGG | 0.299553 | 4.4:+35948726 | None:intergenic |
CCTCTGGCGCACCAAGCTTC+TGG | 0.314745 | 4.4:+35948340 | None:intergenic |
CGCATGTGGTTTCGAAGTTA+AGG | 0.337143 | 4.4:-35948432 | MS.gene057720:CDS |
AGCAGGTTCTTATGCATTGT+TGG | 0.339619 | 4.4:-35948476 | MS.gene057720:CDS |
CAGGAAAAGACTAATGAGTA+TGG | 0.340819 | 4.4:-35946540 | MS.gene057720:CDS |
TCAGAAATGACAAGTGGAAT+TGG | 0.351271 | 4.4:-35946498 | MS.gene057720:CDS |
TAACATGGTTGCAGTTTCAT+TGG | 0.354483 | 4.4:-35947869 | MS.gene057720:CDS |
GGTCTCAATGGAAAGAAAAT+AGG | 0.357122 | 4.4:-35947472 | MS.gene057720:CDS |
GTATCTTGACGAGGTGAAAT+TGG | 0.364768 | 4.4:+35947748 | None:intergenic |
ATACTGTCCTTAAGCAAAAC+AGG | 0.367417 | 4.4:+35948526 | None:intergenic |
CAATTTGAATTCTGAAAGTA+AGG | 0.368656 | 4.4:+35947105 | None:intergenic |
CGTGACCGTTCGTTGCTTCA+TGG | 0.370142 | 4.4:-35948553 | MS.gene057720:CDS |
AACATGGTTGCAGTTTCATT+GGG | 0.371572 | 4.4:-35947868 | MS.gene057720:CDS |
CATAAATACATACTAAAATA+GGG | 0.375693 | 4.4:+35947002 | None:intergenic |
GCAGGTTCTTATGCATTGTT+GGG | 0.382233 | 4.4:-35948475 | MS.gene057720:CDS |
CAGCAGCAAGTATTGGATTC+AGG | 0.382460 | 4.4:+35948641 | None:intergenic |
GTGACATTGGATCCTTTATA+GGG | 0.389701 | 4.4:+35947424 | None:intergenic |
CTGTTCCAGCTGGGTATGAT+AGG | 0.391344 | 4.4:-35946326 | MS.gene057720:CDS |
GATAGGCAAGGAATGCCATT+TGG | 0.391718 | 4.4:-35946309 | MS.gene057720:CDS |
CAATGTCACTTCCATCTTTG+AGG | 0.393004 | 4.4:-35947410 | MS.gene057720:CDS |
GCAGCTAAGTTTATACCTTC+AGG | 0.395988 | 4.4:-35947523 | MS.gene057720:CDS |
AGTCCTTGCGGGTCTAGCTT+TGG | 0.397039 | 4.4:-35947913 | MS.gene057720:CDS |
TTTGATAAAGAAGAATCAAT+TGG | 0.401016 | 4.4:-35946415 | MS.gene057720:CDS |
TCTGAAACTGTCCTGCATAT+TGG | 0.401701 | 4.4:+35947610 | None:intergenic |
CTCAATAAACAAGGTCTCAA+TGG | 0.407744 | 4.4:-35947484 | MS.gene057720:CDS |
CCACCGTTGGACTCACTAGT+AGG | 0.419110 | 4.4:-35947783 | MS.gene057720:CDS |
CTAGTCTCTCGGAGTGGTAT+GGG | 0.419677 | 4.4:-35948381 | MS.gene057720:CDS |
GAATCAATTGGATGCATTGT+TGG | 0.427860 | 4.4:-35946403 | MS.gene057720:CDS |
ATAGGCAAGGAATGCCATTT+GGG | 0.431951 | 4.4:-35946308 | MS.gene057720:CDS |
TCCAACACAGCAGCAAGTAT+TGG | 0.433927 | 4.4:+35948634 | None:intergenic |
CATTGAGACCTTGTTTATTG+AGG | 0.434452 | 4.4:+35947485 | None:intergenic |
GTGACCGTTCGTTGCTTCAT+GGG | 0.437734 | 4.4:-35948552 | MS.gene057720:CDS |
GCTTCTCCAATGTTGGCAAT+TGG | 0.439223 | 4.4:-35946366 | MS.gene057720:CDS |
GCATGTGGTTTCGAAGTTAA+GGG | 0.442919 | 4.4:-35948431 | MS.gene057720:CDS |
TCTGCTTGATCTCGAGCGTC+AGG | 0.448953 | 4.4:+35948604 | None:intergenic |
ACAACTGAATTGTGATCAGC+TGG | 0.450183 | 4.4:+35947817 | None:intergenic |
CGCCAGAGGTGGATTTGCAT+TGG | 0.451539 | 4.4:-35948326 | MS.gene057720:intron |
CATGTGCTTGATGTAATTGT+TGG | 0.452305 | 4.4:-35947580 | MS.gene057720:CDS |
CCAGCTGGAACAGTGATTGC+AGG | 0.457782 | 4.4:+35946336 | None:intergenic |
TGGAGTCTAAAAGTCCTTGC+GGG | 0.463261 | 4.4:-35947924 | MS.gene057720:CDS |
TCTCCAATGTTGGCAATTGG+AGG | 0.468557 | 4.4:-35946363 | MS.gene057720:CDS |
GCTGATCACAATTCAGTTGT+CGG | 0.471714 | 4.4:-35947814 | MS.gene057720:CDS |
CCTGCAATCACTGTTCCAGC+TGG | 0.473810 | 4.4:-35946336 | MS.gene057720:CDS |
ACTAGTCTCTCGGAGTGGTA+TGG | 0.475334 | 4.4:-35948382 | MS.gene057720:CDS |
GAAGCCGGTGCTATTATTCT+GGG | 0.475598 | 4.4:-35948409 | MS.gene057720:CDS |
GATAAACTCAACACTTCAGC+AGG | 0.475725 | 4.4:-35948493 | MS.gene057720:CDS |
TCCAATACTTGCTGCTGTGT+TGG | 0.493442 | 4.4:-35948635 | MS.gene057720:CDS |
CTCAAAGATGGAAGTGACAT+TGG | 0.496520 | 4.4:+35947411 | None:intergenic |
CATGTTAGTTGCCACTGAAA+TGG | 0.497625 | 4.4:+35947885 | None:intergenic |
CTCTGATGCTTCTCCAATGT+TGG | 0.503905 | 4.4:-35946373 | MS.gene057720:CDS |
CGCTCGAGATCAAGCAGACA+AGG | 0.505254 | 4.4:-35948599 | MS.gene057720:CDS |
TTATGCATTGTTGGGATCGA+AGG | 0.506206 | 4.4:-35948467 | MS.gene057720:CDS |
ATTGAGATGGTCCTCAAAGA+TGG | 0.506790 | 4.4:+35947399 | None:intergenic |
CATTTCAGTGGCAACTAACA+TGG | 0.509195 | 4.4:-35947884 | MS.gene057720:CDS |
TGGAGAAGCATCAGAGCCTA+TGG | 0.512587 | 4.4:+35946380 | None:intergenic |
AACCAATGCAAATCCACCTC+TGG | 0.526339 | 4.4:+35948324 | None:intergenic |
TCACCTCGTCAAGATACTAT+CGG | 0.527519 | 4.4:-35947742 | MS.gene057720:CDS |
CCTCCAAAACAGATCCCAAA+TGG | 0.530797 | 4.4:+35946294 | None:intergenic |
ATGACTTTGAGCAATCTACC+AGG | 0.532128 | 4.4:-35946233 | MS.gene057720:CDS |
TACCCTCCAATTGCCAACAT+TGG | 0.534176 | 4.4:+35946360 | None:intergenic |
GAAGCTTGGTGCGCCAGAGG+TGG | 0.536770 | 4.4:-35948337 | MS.gene057720:CDS |
CACCTCGTCAAGATACTATC+GGG | 0.539125 | 4.4:-35947741 | MS.gene057720:intron |
GATGGGTGGCTTCCTTGCCC+TGG | 0.546147 | 4.4:+35946215 | None:intergenic |
TGTTATGCAGAATCCTTATG+TGG | 0.546341 | 4.4:-35947944 | MS.gene057720:intron |
TTCTTGTATGTCTTCTATGG+TGG | 0.552125 | 4.4:+35948729 | None:intergenic |
GTTTCGAAGTTAAGGGAAGC+CGG | 0.553804 | 4.4:-35948424 | MS.gene057720:CDS |
GGTTCCACGTGACGCGCATG+TGG | 0.563814 | 4.4:-35948446 | MS.gene057720:CDS |
AATTGAAGCAATGAAGATGA+TGG | 0.567872 | 4.4:-35946466 | MS.gene057720:CDS |
CACCGTTGGACTCACTAGTA+GGG | 0.568104 | 4.4:-35947782 | MS.gene057720:CDS |
CTAACACTGTGCCAGAAGCT+TGG | 0.569014 | 4.4:-35948351 | MS.gene057720:CDS |
CTCCAATGTTGGCAATTGGA+GGG | 0.574109 | 4.4:-35946362 | MS.gene057720:CDS |
CCAGAAGCTTGGTGCGCCAG+AGG | 0.575202 | 4.4:-35948340 | MS.gene057720:CDS |
TTGGATGCATTGTTGGCCAT+AGG | 0.576389 | 4.4:-35946396 | MS.gene057720:CDS |
TCTGGGGAAAACTAGTCTCT+CGG | 0.577590 | 4.4:-35948392 | MS.gene057720:CDS |
ATCATTTCACCACTTTGAAG+AGG | 0.579767 | 4.4:+35947130 | None:intergenic |
TTTACCTCAACACATTGAGA+TGG | 0.579955 | 4.4:+35947386 | None:intergenic |
CTGCAATCACTGTTCCAGCT+GGG | 0.580392 | 4.4:-35946335 | MS.gene057720:CDS |
GTCGGAATCAAGCCCACCGT+TGG | 0.580429 | 4.4:-35947796 | MS.gene057720:CDS |
GTTGGACTCACTAGTAGGGC+TGG | 0.583241 | 4.4:-35947778 | MS.gene057720:CDS |
CCTTGCCTATCATACCCAGC+TGG | 0.584675 | 4.4:+35946321 | None:intergenic |
TCATTTCACCACTTTGAAGA+GGG | 0.584986 | 4.4:+35947131 | None:intergenic |
AGGAAAAGACTAATGAGTAT+GGG | 0.585554 | 4.4:-35946539 | MS.gene057720:CDS |
ATCTCAGCTAGAGACTTCAC+AGG | 0.586005 | 4.4:+35947046 | None:intergenic |
ATTGCATCAGAAATGACAAG+TGG | 0.589208 | 4.4:-35946504 | MS.gene057720:CDS |
TGAAGTGTTGAGTTTATCAA+AGG | 0.598308 | 4.4:+35948498 | None:intergenic |
AGGACCATCTCAATGTGTTG+AGG | 0.598729 | 4.4:-35947390 | MS.gene057720:intron |
TAGTCTCTCGGAGTGGTATG+GGG | 0.603289 | 4.4:-35948380 | MS.gene057720:CDS |
CATGTGTGAATGAAAAGCGA+TGG | 0.610101 | 4.4:+35946197 | None:intergenic |
TTTCCCCAGAATAATAGCAC+CGG | 0.610143 | 4.4:+35948405 | None:intergenic |
CTTTGGATCAGCCATTTCAG+TGG | 0.617090 | 4.4:-35947896 | MS.gene057720:CDS |
ATATGCAAATCAAGACAAAG+AGG | 0.618741 | 4.4:-35947205 | MS.gene057720:intron |
GCTAAGTTTATACCTTCAGG+TGG | 0.620054 | 4.4:-35947520 | MS.gene057720:CDS |
ACAAAGAGGTGCAACAGTGG+TGG | 0.621804 | 4.4:-35947191 | MS.gene057720:CDS |
GAAACCACATGCGCGTCACG+TGG | 0.622406 | 4.4:+35948442 | None:intergenic |
TTGAGCAATCTACCAGGGCA+AGG | 0.622543 | 4.4:-35946227 | MS.gene057720:CDS |
GTGGAGTCTAAAAGTCCTTG+CGG | 0.628103 | 4.4:-35947925 | MS.gene057720:CDS |
CCAGCTGGGTATGATAGGCA+AGG | 0.632114 | 4.4:-35946321 | MS.gene057720:CDS |
GTTCTCGACCCTCTTCAAAG+TGG | 0.637112 | 4.4:-35947139 | MS.gene057720:CDS |
AAGACAAAGAGGTGCAACAG+TGG | 0.638746 | 4.4:-35947194 | MS.gene057720:CDS |
ACATGGTTGCAGTTTCATTG+GGG | 0.641691 | 4.4:-35947867 | MS.gene057720:CDS |
GATCCAAAGCTAGACCCGCA+AGG | 0.645373 | 4.4:+35947910 | None:intergenic |
ACTTTGAAGAGGGTCGAGAA+CGG | 0.648748 | 4.4:+35947141 | None:intergenic |
CTACTAGTGAGTCCAACGGT+GGG | 0.650363 | 4.4:+35947784 | None:intergenic |
TGACTTTGAGCAATCTACCA+GGG | 0.652759 | 4.4:-35946232 | MS.gene057720:CDS |
TACTGTCCTTAAGCAAAACA+GGG | 0.655683 | 4.4:+35948527 | None:intergenic |
AAGCAATTCCTCAATAAACA+AGG | 0.659450 | 4.4:-35947493 | MS.gene057720:CDS |
ATGTGTGAATGAAAAGCGAT+GGG | 0.665768 | 4.4:+35946198 | None:intergenic |
AATTGCTTATAACCACCTGA+AGG | 0.670396 | 4.4:+35947508 | None:intergenic |
CCTACTAGTGAGTCCAACGG+TGG | 0.675556 | 4.4:+35947783 | None:intergenic |
AAGCCGGTGCTATTATTCTG+GGG | 0.692401 | 4.4:-35948408 | MS.gene057720:CDS |
TCATTGGGGACAGAAACTGA+TGG | 0.695584 | 4.4:-35947853 | MS.gene057720:CDS |
GGATCCCATGAAGCAACGAA+CGG | 0.695610 | 4.4:+35948548 | None:intergenic |
AGCCCTACTAGTGAGTCCAA+CGG | 0.702539 | 4.4:+35947780 | None:intergenic |
CAACTGAATTGTGATCAGCT+GGG | 0.702745 | 4.4:+35947818 | None:intergenic |
TGTGAATGAAAAGCGATGGG+TGG | 0.708050 | 4.4:+35946201 | None:intergenic |
TACCCGATAGTATCTTGACG+AGG | 0.755148 | 4.4:+35947739 | None:intergenic |
GGAAAACTAGTCTCTCGGAG+TGG | 0.758159 | 4.4:-35948387 | MS.gene057720:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATAAATACATACTAAAAT+AGG | + | chr4.4:35948013-35948032 | None:intergenic | 15.0% |
!! | ATATAATAAAACAGACAAAA+TGG | + | chr4.4:35947788-35947807 | None:intergenic | 15.0% |
!! | CATAAATACATACTAAAATA+GGG | + | chr4.4:35948012-35948031 | None:intergenic | 15.0% |
!!! | GATTTAGAATTTAATTACAT+TGG | - | chr4.4:35946901-35946920 | MS.gene057720:intron | 15.0% |
!! | AAATTTAGCATTAAATAGAG+TGG | - | chr4.4:35946929-35946948 | MS.gene057720:intron | 20.0% |
!! | AATACTATAAAACACTAACA+CGG | + | chr4.4:35948404-35948423 | None:intergenic | 20.0% |
!! | CTTATGCATAATACATAATA+GGG | + | chr4.4:35948183-35948202 | None:intergenic | 20.0% |
!! | TAACATGTTAACTTTGATAT+TGG | - | chr4.4:35946789-35946808 | MS.gene057720:intron | 20.0% |
!! | TCTTATGCATAATACATAAT+AGG | + | chr4.4:35948184-35948203 | None:intergenic | 20.0% |
!! | TTTGATAAAGAAGAATCAAT+TGG | - | chr4.4:35948596-35948615 | MS.gene057720:CDS | 20.0% |
!!! | ATTATAATTAACTTGAGCTA+AGG | + | chr4.4:35948104-35948123 | None:intergenic | 20.0% |
!!! | ATTCCCACATTTAAAATTAA+AGG | + | chr4.4:35947357-35947376 | None:intergenic | 20.0% |
!!! | TATGTATATATATTTTGCAC+AGG | - | chr4.4:35947378-35947397 | MS.gene057720:intron | 20.0% |
!!! | TTCCCACATTTAAAATTAAA+GGG | + | chr4.4:35947356-35947375 | None:intergenic | 20.0% |
! | GTCATTCAAAAAGAATTAAG+AGG | + | chr4.4:35948040-35948059 | None:intergenic | 25.0% |
! | TGATATGATAACTTTGACAT+TGG | - | chr4.4:35946983-35947002 | MS.gene057720:intron | 25.0% |
! | TTGAATATAACTACATGTGT+CGG | + | chr4.4:35948337-35948356 | None:intergenic | 25.0% |
!! | CAATTTGAATTCTGAAAGTA+AGG | + | chr4.4:35947909-35947928 | None:intergenic | 25.0% |
!! | GTGTTTTATAGTATTTTGCT+CGG | - | chr4.4:35948409-35948428 | MS.gene057720:CDS | 25.0% |
!! | TAAGCAATCTCAATCAATTT+TGG | + | chr4.4:35948759-35948778 | None:intergenic | 25.0% |
!! | TTGTAGCTTCATAATCTTTT+GGG | + | chr4.4:35947463-35947482 | None:intergenic | 25.0% |
!! | TTTGTAGCTTCATAATCTTT+TGG | + | chr4.4:35947464-35947483 | None:intergenic | 25.0% |
!!! | AATCTCAATCAATTTTGGTT+CGG | + | chr4.4:35948754-35948773 | None:intergenic | 25.0% |
!!! | TGCCCTTTAATTTTAAATGT+GGG | - | chr4.4:35947351-35947370 | MS.gene057720:intron | 25.0% |
!!! | TTGCCCTTTAATTTTAAATG+TGG | - | chr4.4:35947350-35947369 | MS.gene057720:intron | 25.0% |
AAGCAATTCCTCAATAAACA+AGG | - | chr4.4:35947518-35947537 | MS.gene057720:CDS | 30.0% | |
AATTCCTCATGAGATAGAAT+AGG | - | chr4.4:35946734-35946753 | MS.gene057720:intron | 30.0% | |
AATTGAAGCAATGAAGATGA+TGG | - | chr4.4:35948545-35948564 | MS.gene057720:CDS | 30.0% | |
AGGAAAAGACTAATGAGTAT+GGG | - | chr4.4:35948472-35948491 | MS.gene057720:CDS | 30.0% | |
ATATGCAAATCAAGACAAAG+AGG | - | chr4.4:35947806-35947825 | MS.gene057720:CDS | 30.0% | |
CCTTTATAGGGAATCAAAAA+TGG | + | chr4.4:35947578-35947597 | None:intergenic | 30.0% | |
TTTGGTTGTTGAACTGTTTA+TGG | - | chr4.4:35948437-35948456 | MS.gene057720:CDS | 30.0% | |
! | CTTTTACTTACACAGAATCA+AGG | - | chr4.4:35946346-35946365 | MS.gene057720:CDS | 30.0% |
! | GAAAGAAAATAGGTGTTTTG+AGG | - | chr4.4:35947549-35947568 | MS.gene057720:CDS | 30.0% |
! | GTATTTTGCTCGGTTAAATT+TGG | - | chr4.4:35948419-35948438 | MS.gene057720:CDS | 30.0% |
! | GTTTATGGTTTTCTTGTAAC+AGG | - | chr4.4:35948452-35948471 | MS.gene057720:CDS | 30.0% |
!! | CCATTTTTGATTCCCTATAA+AGG | - | chr4.4:35947575-35947594 | MS.gene057720:CDS | 30.0% |
!! | TGAAGTGTTGAGTTTATCAA+AGG | + | chr4.4:35946516-35946535 | None:intergenic | 30.0% |
AACATGGTTGCAGTTTCATT+GGG | - | chr4.4:35947143-35947162 | MS.gene057720:CDS | 35.0% | |
AATTGCTTATAACCACCTGA+AGG | + | chr4.4:35947506-35947525 | None:intergenic | 35.0% | |
AGAATCAATGACCATTTGAG+GGG | + | chr4.4:35947679-35947698 | None:intergenic | 35.0% | |
AGTGACATTGGATCCTTTAT+AGG | + | chr4.4:35947591-35947610 | None:intergenic | 35.0% | |
ATACTGTCCTTAAGCAAAAC+AGG | + | chr4.4:35946488-35946507 | None:intergenic | 35.0% | |
ATGGAGCAGTTGTCAAAAAA+TGG | - | chr4.4:35948564-35948583 | MS.gene057720:CDS | 35.0% | |
ATGTGTGAATGAAAAGCGAT+GGG | + | chr4.4:35948816-35948835 | None:intergenic | 35.0% | |
ATTGCATCAGAAATGACAAG+TGG | - | chr4.4:35948507-35948526 | MS.gene057720:CDS | 35.0% | |
CAATCCTATTCTATCTCATG+AGG | + | chr4.4:35946741-35946760 | None:intergenic | 35.0% | |
CAGGAAAAGACTAATGAGTA+TGG | - | chr4.4:35948471-35948490 | MS.gene057720:CDS | 35.0% | |
CATGTGCTTGATGTAATTGT+TGG | - | chr4.4:35947431-35947450 | MS.gene057720:CDS | 35.0% | |
CTCAATAAACAAGGTCTCAA+TGG | - | chr4.4:35947527-35947546 | MS.gene057720:CDS | 35.0% | |
GAATCAATTGGATGCATTGT+TGG | - | chr4.4:35948608-35948627 | MS.gene057720:CDS | 35.0% | |
GAGAATCAATGACCATTTGA+GGG | + | chr4.4:35947680-35947699 | None:intergenic | 35.0% | |
GGTCTCAATGGAAAGAAAAT+AGG | - | chr4.4:35947539-35947558 | MS.gene057720:CDS | 35.0% | |
GTGACATTGGATCCTTTATA+GGG | + | chr4.4:35947590-35947609 | None:intergenic | 35.0% | |
TAACATGGTTGCAGTTTCAT+TGG | - | chr4.4:35947142-35947161 | MS.gene057720:CDS | 35.0% | |
TACTGTCCTTAAGCAAAACA+GGG | + | chr4.4:35946487-35946506 | None:intergenic | 35.0% | |
TATTATCCTAGTGTCATGTC+TGG | - | chr4.4:35948375-35948394 | MS.gene057720:CDS | 35.0% | |
TCAGAAATGACAAGTGGAAT+TGG | - | chr4.4:35948513-35948532 | MS.gene057720:CDS | 35.0% | |
TGAGAATCAATGACCATTTG+AGG | + | chr4.4:35947681-35947700 | None:intergenic | 35.0% | |
TGCTTCTTGTATGTCTTCTA+TGG | + | chr4.4:35946288-35946307 | None:intergenic | 35.0% | |
TGGAGCAGTTGTCAAAAAAT+GGG | - | chr4.4:35948565-35948584 | MS.gene057720:CDS | 35.0% | |
TGTTATGCAGAATCCTTATG+TGG | - | chr4.4:35947067-35947086 | MS.gene057720:CDS | 35.0% | |
TTCTTGTATGTCTTCTATGG+TGG | + | chr4.4:35946285-35946304 | None:intergenic | 35.0% | |
TTTACCTCAACACATTGAGA+TGG | + | chr4.4:35947628-35947647 | None:intergenic | 35.0% | |
! | ATCATTTCACCACTTTGAAG+AGG | + | chr4.4:35947884-35947903 | None:intergenic | 35.0% |
! | CATTGAGACCTTGTTTATTG+AGG | + | chr4.4:35947529-35947548 | None:intergenic | 35.0% |
! | TCATTTCACCACTTTGAAGA+GGG | + | chr4.4:35947883-35947902 | None:intergenic | 35.0% |
AAAGGGCAAAACTACATCAG+AGG | + | chr4.4:35947339-35947358 | None:intergenic | 40.0% | |
ACAACTGAATTGTGATCAGC+TGG | + | chr4.4:35947197-35947216 | None:intergenic | 40.0% | |
ACATGGTTGCAGTTTCATTG+GGG | - | chr4.4:35947144-35947163 | MS.gene057720:CDS | 40.0% | |
AGCAGGTTCTTATGCATTGT+TGG | - | chr4.4:35946535-35946554 | MS.gene057720:CDS | 40.0% | |
ATGACTTTGAGCAATCTACC+AGG | - | chr4.4:35948778-35948797 | MS.gene057720:CDS | 40.0% | |
ATTGAGATGGTCCTCAAAGA+TGG | + | chr4.4:35947615-35947634 | None:intergenic | 40.0% | |
CAACTGAATTGTGATCAGCT+GGG | + | chr4.4:35947196-35947215 | None:intergenic | 40.0% | |
CATGTGTGAATGAAAAGCGA+TGG | + | chr4.4:35948817-35948836 | None:intergenic | 40.0% | |
CATGTTAGTTGCCACTGAAA+TGG | + | chr4.4:35947129-35947148 | None:intergenic | 40.0% | |
CATTTCAGTGGCAACTAACA+TGG | - | chr4.4:35947127-35947146 | MS.gene057720:CDS | 40.0% | |
CTCAAAGATGGAAGTGACAT+TGG | + | chr4.4:35947603-35947622 | None:intergenic | 40.0% | |
GATAAACTCAACACTTCAGC+AGG | - | chr4.4:35946518-35946537 | MS.gene057720:CDS | 40.0% | |
GCAGCTAAGTTTATACCTTC+AGG | - | chr4.4:35947488-35947507 | MS.gene057720:CDS | 40.0% | |
GCAGGTTCTTATGCATTGTT+GGG | - | chr4.4:35946536-35946555 | MS.gene057720:CDS | 40.0% | |
GCATGTGGTTTCGAAGTTAA+GGG | - | chr4.4:35946580-35946599 | MS.gene057720:intron | 40.0% | |
GCTAAGGTATAAGCAGTTTG+AGG | + | chr4.4:35948088-35948107 | None:intergenic | 40.0% | |
GCTAAGTTTATACCTTCAGG+TGG | - | chr4.4:35947491-35947510 | MS.gene057720:CDS | 40.0% | |
GCTGATCACAATTCAGTTGT+CGG | - | chr4.4:35947197-35947216 | MS.gene057720:intron | 40.0% | |
GTATCTTGACGAGGTGAAAT+TGG | + | chr4.4:35947266-35947285 | None:intergenic | 40.0% | |
TCACCTCGTCAAGATACTAT+CGG | - | chr4.4:35947269-35947288 | MS.gene057720:intron | 40.0% | |
TGACTTTGAGCAATCTACCA+GGG | - | chr4.4:35948779-35948798 | MS.gene057720:CDS | 40.0% | |
TTATGCATTGTTGGGATCGA+AGG | - | chr4.4:35946544-35946563 | MS.gene057720:intron | 40.0% | |
TTTCCCCAGAATAATAGCAC+CGG | + | chr4.4:35946609-35946628 | None:intergenic | 40.0% | |
! | ATAGGCAAGGAATGCCATTT+GGG | - | chr4.4:35948703-35948722 | MS.gene057720:CDS | 40.0% |
! | CAATGTCACTTCCATCTTTG+AGG | - | chr4.4:35947601-35947620 | MS.gene057720:CDS | 40.0% |
! | GGACTTTTAGACTCCACATA+AGG | + | chr4.4:35947083-35947102 | None:intergenic | 40.0% |
! | TCTGAAACTGTCCTGCATAT+TGG | + | chr4.4:35947404-35947423 | None:intergenic | 40.0% |
!! | ATGCCATTTGGGATCTGTTT+TGG | - | chr4.4:35948714-35948733 | MS.gene057720:CDS | 40.0% |
!! | CATTTGGGATCTGTTTTGGA+GGG | - | chr4.4:35948718-35948737 | MS.gene057720:CDS | 40.0% |
!! | TGCAACAGTGGTGGATAATT+TGG | - | chr4.4:35947829-35947848 | MS.gene057720:CDS | 40.0% |
!!! | ATCTGTTTTGGAGGGTTGAA+GGG | - | chr4.4:35948726-35948745 | MS.gene057720:CDS | 40.0% |
AACCAATGCAAATCCACCTC+TGG | + | chr4.4:35946690-35946709 | None:intergenic | 45.0% | |
AGGACCATCTCAATGTGTTG+AGG | - | chr4.4:35947621-35947640 | MS.gene057720:intron | 45.0% | |
ATCTCAGCTAGAGACTTCAC+AGG | + | chr4.4:35947968-35947987 | None:intergenic | 45.0% | |
CACCTCGTCAAGATACTATC+GGG | - | chr4.4:35947270-35947289 | MS.gene057720:intron | 45.0% | |
CATAACACACACCCCTCAAA+TGG | - | chr4.4:35947665-35947684 | MS.gene057720:intron | 45.0% | |
CCTCCAAAACAGATCCCAAA+TGG | + | chr4.4:35948720-35948739 | None:intergenic | 45.0% | |
CGCATGTGGTTTCGAAGTTA+AGG | - | chr4.4:35946579-35946598 | MS.gene057720:intron | 45.0% | |
CTCCAATGTTGGCAATTGGA+GGG | - | chr4.4:35948649-35948668 | MS.gene057720:CDS | 45.0% | |
CTCTGATGCTTCTCCAATGT+TGG | - | chr4.4:35948638-35948657 | MS.gene057720:CDS | 45.0% | |
CTTTGGATCAGCCATTTCAG+TGG | - | chr4.4:35947115-35947134 | MS.gene057720:CDS | 45.0% | |
GATAGGCAAGGAATGCCATT+TGG | - | chr4.4:35948702-35948721 | MS.gene057720:CDS | 45.0% | |
GCTTCTCCAATGTTGGCAAT+TGG | - | chr4.4:35948645-35948664 | MS.gene057720:CDS | 45.0% | |
GTGGAGTCTAAAAGTCCTTG+CGG | - | chr4.4:35947086-35947105 | MS.gene057720:CDS | 45.0% | |
GTTTCGAAGTTAAGGGAAGC+CGG | - | chr4.4:35946587-35946606 | MS.gene057720:intron | 45.0% | |
TACCCGATAGTATCTTGACG+AGG | + | chr4.4:35947275-35947294 | None:intergenic | 45.0% | |
TACCCTCCAATTGCCAACAT+TGG | + | chr4.4:35948654-35948673 | None:intergenic | 45.0% | |
TCATTGGGGACAGAAACTGA+TGG | - | chr4.4:35947158-35947177 | MS.gene057720:CDS | 45.0% | |
TCCAACACAGCAGCAAGTAT+TGG | + | chr4.4:35946380-35946399 | None:intergenic | 45.0% | |
TCTCCAATGTTGGCAATTGG+AGG | - | chr4.4:35948648-35948667 | MS.gene057720:CDS | 45.0% | |
TGGAGTCTAAAAGTCCTTGC+GGG | - | chr4.4:35947087-35947106 | MS.gene057720:CDS | 45.0% | |
TGTGAATGAAAAGCGATGGG+TGG | + | chr4.4:35948813-35948832 | None:intergenic | 45.0% | |
TTGGATGCATTGTTGGCCAT+AGG | - | chr4.4:35948615-35948634 | MS.gene057720:CDS | 45.0% | |
! | AAGACAAAGAGGTGCAACAG+TGG | - | chr4.4:35947817-35947836 | MS.gene057720:CDS | 45.0% |
! | ACTTTGAAGAGGGTCGAGAA+CGG | + | chr4.4:35947873-35947892 | None:intergenic | 45.0% |
! | TAACTACATGTGTCGGTGTC+AGG | + | chr4.4:35948330-35948349 | None:intergenic | 45.0% |
! | TCCAATACTTGCTGCTGTGT+TGG | - | chr4.4:35946376-35946395 | MS.gene057720:CDS | 45.0% |
! | TCTGGGGAAAACTAGTCTCT+CGG | - | chr4.4:35946619-35946638 | MS.gene057720:intron | 45.0% |
! | TGGGATCCCTGTTTTGCTTA+AGG | - | chr4.4:35946478-35946497 | MS.gene057720:CDS | 45.0% |
! | TTTTGCACAGGCCAATATGC+AGG | - | chr4.4:35947390-35947409 | MS.gene057720:intron | 45.0% |
!! | AAGCCGGTGCTATTATTCTG+GGG | - | chr4.4:35946603-35946622 | MS.gene057720:intron | 45.0% |
!! | CAGCAGCAAGTATTGGATTC+AGG | + | chr4.4:35946373-35946392 | None:intergenic | 45.0% |
!! | CCATTTGGGATCTGTTTTGG+AGG | - | chr4.4:35948717-35948736 | MS.gene057720:CDS | 45.0% |
!! | GAAGCCGGTGCTATTATTCT+GGG | - | chr4.4:35946602-35946621 | MS.gene057720:intron | 45.0% |
!!! | GATCTGTTTTGGAGGGTTGA+AGG | - | chr4.4:35948725-35948744 | MS.gene057720:CDS | 45.0% |
AGCCCTACTAGTGAGTCCAA+CGG | + | chr4.4:35947234-35947253 | None:intergenic | 50.0% | |
CACCGTTGGACTCACTAGTA+GGG | - | chr4.4:35947229-35947248 | MS.gene057720:intron | 50.0% | |
CTAACACTGTGCCAGAAGCT+TGG | - | chr4.4:35946660-35946679 | MS.gene057720:intron | 50.0% | |
CTACTAGTGAGTCCAACGGT+GGG | + | chr4.4:35947230-35947249 | None:intergenic | 50.0% | |
CTAGTCTCTCGGAGTGGTAT+GGG | - | chr4.4:35946630-35946649 | MS.gene057720:intron | 50.0% | |
CTGCAATCACTGTTCCAGCT+GGG | - | chr4.4:35948676-35948695 | MS.gene057720:CDS | 50.0% | |
CTGTTCCAGCTGGGTATGAT+AGG | - | chr4.4:35948685-35948704 | MS.gene057720:CDS | 50.0% | |
GGATCCCATGAAGCAACGAA+CGG | + | chr4.4:35946466-35946485 | None:intergenic | 50.0% | |
GTGACCGTTCGTTGCTTCAT+GGG | - | chr4.4:35946459-35946478 | MS.gene057720:CDS | 50.0% | |
GTTCTCGACCCTCTTCAAAG+TGG | - | chr4.4:35947872-35947891 | MS.gene057720:CDS | 50.0% | |
TAGTCTCTCGGAGTGGTATG+GGG | - | chr4.4:35946631-35946650 | MS.gene057720:intron | 50.0% | |
TTGAGCAATCTACCAGGGCA+AGG | - | chr4.4:35948784-35948803 | MS.gene057720:CDS | 50.0% | |
! | ACAAAGAGGTGCAACAGTGG+TGG | - | chr4.4:35947820-35947839 | MS.gene057720:CDS | 50.0% |
! | ACTAGTCTCTCGGAGTGGTA+TGG | - | chr4.4:35946629-35946648 | MS.gene057720:intron | 50.0% |
! | GGAAAACTAGTCTCTCGGAG+TGG | - | chr4.4:35946624-35946643 | MS.gene057720:intron | 50.0% |
!! | GGAAGCCGGTGCTATTATTC+TGG | - | chr4.4:35946601-35946620 | MS.gene057720:intron | 50.0% |
!! | TGGAGAAGCATCAGAGCCTA+TGG | + | chr4.4:35948634-35948653 | None:intergenic | 50.0% |
CCACCGTTGGACTCACTAGT+AGG | - | chr4.4:35947228-35947247 | MS.gene057720:intron | 55.0% | |
CCAGCTGGAACAGTGATTGC+AGG | + | chr4.4:35948678-35948697 | None:intergenic | 55.0% | |
CCAGCTGGGTATGATAGGCA+AGG | - | chr4.4:35948690-35948709 | MS.gene057720:CDS | 55.0% | |
CCTACTAGTGAGTCCAACGG+TGG | + | chr4.4:35947231-35947250 | None:intergenic | 55.0% | |
CCTGCAATCACTGTTCCAGC+TGG | - | chr4.4:35948675-35948694 | MS.gene057720:CDS | 55.0% | |
CCTTGCCTATCATACCCAGC+TGG | + | chr4.4:35948693-35948712 | None:intergenic | 55.0% | |
CGCTCGAGATCAAGCAGACA+AGG | - | chr4.4:35946412-35946431 | MS.gene057720:CDS | 55.0% | |
CGGACACCAGACATGACACT+AGG | + | chr4.4:35948384-35948403 | None:intergenic | 55.0% | |
CGTGACCGTTCGTTGCTTCA+TGG | - | chr4.4:35946458-35946477 | MS.gene057720:CDS | 55.0% | |
GATCCAAAGCTAGACCCGCA+AGG | + | chr4.4:35947104-35947123 | None:intergenic | 55.0% | |
GTTGGACTCACTAGTAGGGC+TGG | - | chr4.4:35947233-35947252 | MS.gene057720:intron | 55.0% | |
TCTGCTTGATCTCGAGCGTC+AGG | + | chr4.4:35946410-35946429 | None:intergenic | 55.0% | |
! | AGTCCTTGCGGGTCTAGCTT+TGG | - | chr4.4:35947098-35947117 | MS.gene057720:CDS | 55.0% |
! | CGCCAGAGGTGGATTTGCAT+TGG | - | chr4.4:35946685-35946704 | MS.gene057720:intron | 55.0% |
GAAACCACATGCGCGTCACG+TGG | + | chr4.4:35946572-35946591 | None:intergenic | 60.0% | |
GTCGGAATCAAGCCCACCGT+TGG | - | chr4.4:35947215-35947234 | MS.gene057720:intron | 60.0% | |
CCTCTGGCGCACCAAGCTTC+TGG | + | chr4.4:35946674-35946693 | None:intergenic | 65.0% | |
GATGGGTGGCTTCCTTGCCC+TGG | + | chr4.4:35948799-35948818 | None:intergenic | 65.0% | |
GGTTCCACGTGACGCGCATG+TGG | - | chr4.4:35946565-35946584 | MS.gene057720:intron | 65.0% | |
!! | CCAGAAGCTTGGTGCGCCAG+AGG | - | chr4.4:35946671-35946690 | MS.gene057720:intron | 65.0% |
!! | GAAGCTTGGTGCGCCAGAGG+TGG | - | chr4.4:35946674-35946693 | MS.gene057720:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 35946185 | 35948848 | 35946185 | ID=MS.gene057720 |
chr4.4 | mRNA | 35946185 | 35948848 | 35946185 | ID=MS.gene057720.t1;Parent=MS.gene057720 |
chr4.4 | exon | 35948327 | 35948848 | 35948327 | ID=MS.gene057720.t1.exon1;Parent=MS.gene057720.t1 |
chr4.4 | CDS | 35948327 | 35948848 | 35948327 | ID=cds.MS.gene057720.t1;Parent=MS.gene057720.t1 |
chr4.4 | exon | 35947742 | 35947956 | 35947742 | ID=MS.gene057720.t1.exon2;Parent=MS.gene057720.t1 |
chr4.4 | CDS | 35947742 | 35947956 | 35947742 | ID=cds.MS.gene057720.t1;Parent=MS.gene057720.t1 |
chr4.4 | exon | 35947391 | 35947633 | 35947391 | ID=MS.gene057720.t1.exon3;Parent=MS.gene057720.t1 |
chr4.4 | CDS | 35947391 | 35947633 | 35947391 | ID=cds.MS.gene057720.t1;Parent=MS.gene057720.t1 |
chr4.4 | exon | 35947015 | 35947213 | 35947015 | ID=MS.gene057720.t1.exon4;Parent=MS.gene057720.t1 |
chr4.4 | CDS | 35947015 | 35947213 | 35947015 | ID=cds.MS.gene057720.t1;Parent=MS.gene057720.t1 |
chr4.4 | exon | 35946185 | 35946559 | 35946185 | ID=MS.gene057720.t1.exon5;Parent=MS.gene057720.t1 |
chr4.4 | CDS | 35946185 | 35946559 | 35946185 | ID=cds.MS.gene057720.t1;Parent=MS.gene057720.t1 |
Gene Sequence |
Protein sequence |