Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90966.t1 | XP_013456501.1 | 90.2 | 509 | 50 | 0 | 1 | 509 | 1 | 509 | 1.80E-262 | 914.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90966.t1 | A0A1P8B760 | 55.8 | 498 | 207 | 3 | 12 | 507 | 22 | 508 | 3.3e-145 | 516.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90966.t1 | A0A072ULF6 | 90.2 | 509 | 50 | 0 | 1 | 509 | 1 | 509 | 1.3e-262 | 914.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene90966 | -0.828449 | 8.93E-55 | -1.69E-46 |
| MS.gene04921 | MS.gene90966 | 0.810271 | 1.25E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene90966 | -0.808797 | 2.60E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene90966 | -0.864247 | 1.40E-64 | -1.69E-46 |
| MS.gene050323 | MS.gene90966 | -0.845034 | 5.22E-59 | -1.69E-46 |
| MS.gene050496 | MS.gene90966 | -0.836517 | 8.94E-57 | -1.69E-46 |
| MS.gene050504 | MS.gene90966 | -0.827745 | 1.32E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene90966 | -0.842691 | 2.22E-58 | -1.69E-46 |
| MS.gene050612 | MS.gene90966 | -0.825874 | 3.69E-54 | -1.69E-46 |
| MS.gene050697 | MS.gene90966 | -0.803572 | 3.27E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene90966 | -0.801411 | 9.12E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene90966 | -0.821255 | 4.45E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene90966 | -0.860384 | 2.15E-63 | -1.69E-46 |
| MS.gene050871 | MS.gene90966 | -0.858706 | 6.85E-63 | -1.69E-46 |
| MS.gene050904 | MS.gene90966 | -0.806898 | 6.58E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene90966 | -0.806037 | 9.99E-50 | -1.69E-46 |
| MS.gene051044 | MS.gene90966 | 0.819753 | 9.84E-53 | -1.69E-46 |
| MS.gene051138 | MS.gene90966 | 0.827513 | 1.50E-54 | -1.69E-46 |
| MS.gene051268 | MS.gene90966 | -0.807648 | 4.56E-50 | -1.69E-46 |
| MS.gene051317 | MS.gene90966 | -0.806111 | 9.64E-50 | -1.69E-46 |
| MS.gene051439 | MS.gene90966 | 0.831047 | 2.08E-55 | -1.69E-46 |
| MS.gene051651 | MS.gene90966 | 0.84325 | 1.57E-58 | -1.69E-46 |
| MS.gene052100 | MS.gene90966 | -0.813108 | 3.02E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene90966 | -0.829932 | 3.90E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene90966 | -0.813568 | 2.40E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene90966 | -0.812981 | 3.22E-51 | -1.69E-46 |
| MS.gene052494 | MS.gene90966 | 0.835489 | 1.63E-56 | -1.69E-46 |
| MS.gene052503 | MS.gene90966 | -0.807466 | 4.99E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene90966 | -0.812853 | 3.44E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene90966 | -0.811037 | 8.55E-51 | -1.69E-46 |
| MS.gene053097 | MS.gene90966 | 0.816176 | 6.33E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene90966 | -0.821784 | 3.36E-53 | -1.69E-46 |
| MS.gene053479 | MS.gene90966 | -0.822882 | 1.87E-53 | -1.69E-46 |
| MS.gene053480 | MS.gene90966 | -0.80441 | 2.19E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene90966 | -0.821079 | 4.89E-53 | -1.69E-46 |
| MS.gene054344 | MS.gene90966 | -0.813838 | 2.09E-51 | -1.69E-46 |
| MS.gene054706 | MS.gene90966 | 0.80527 | 1.45E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene90966 | -0.864513 | 1.15E-64 | -1.69E-46 |
| MS.gene054954 | MS.gene90966 | -0.822359 | 2.47E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene90966 | -0.814542 | 1.46E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene90966 | -0.825486 | 4.57E-54 | -1.69E-46 |
| MS.gene055748 | MS.gene90966 | -0.843058 | 1.77E-58 | -1.69E-46 |
| MS.gene055750 | MS.gene90966 | -0.832468 | 9.29E-56 | -1.69E-46 |
| MS.gene055751 | MS.gene90966 | -0.844713 | 6.37E-59 | -1.69E-46 |
| MS.gene055776 | MS.gene90966 | -0.801893 | 7.26E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene90966 | -0.875664 | 2.58E-68 | -1.69E-46 |
| MS.gene056266 | MS.gene90966 | -0.800996 | 1.11E-48 | -1.69E-46 |
| MS.gene056387 | MS.gene90966 | -0.843356 | 1.47E-58 | -1.69E-46 |
| MS.gene056504 | MS.gene90966 | -0.853621 | 2.12E-61 | -1.69E-46 |
| MS.gene056510 | MS.gene90966 | -0.816709 | 4.81E-52 | -1.69E-46 |
| MS.gene057086 | MS.gene90966 | -0.802575 | 5.26E-49 | -1.69E-46 |
| MS.gene057720 | MS.gene90966 | 0.807079 | 6.02E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene90966 | 0.810142 | 1.33E-50 | -1.69E-46 |
| MS.gene058173 | MS.gene90966 | 0.804435 | 2.16E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene90966 | 0.81541 | 9.38E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene90966 | 0.831266 | 1.84E-55 | -1.69E-46 |
| MS.gene05837 | MS.gene90966 | -0.80245 | 5.58E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene90966 | -0.811753 | 5.98E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene90966 | -0.827483 | 1.53E-54 | -1.69E-46 |
| MS.gene059045 | MS.gene90966 | 0.813674 | 2.27E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene90966 | -0.801526 | 8.64E-49 | -1.69E-46 |
| MS.gene059304 | MS.gene90966 | 0.806957 | 6.39E-50 | -1.69E-46 |
| MS.gene059667 | MS.gene90966 | -0.808017 | 3.81E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene90966 | -0.847975 | 8.23E-60 | -1.69E-46 |
| MS.gene06000 | MS.gene90966 | -0.867603 | 1.21E-65 | -1.69E-46 |
| MS.gene060405 | MS.gene90966 | 0.810993 | 8.74E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene90966 | -0.810332 | 1.22E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene90966 | -0.849475 | 3.16E-60 | -1.69E-46 |
| MS.gene06077 | MS.gene90966 | -0.835274 | 1.85E-56 | -1.69E-46 |
| MS.gene060982 | MS.gene90966 | -0.860008 | 2.79E-63 | -1.69E-46 |
| MS.gene061038 | MS.gene90966 | 0.821492 | 3.92E-53 | -1.69E-46 |
| MS.gene061044 | MS.gene90966 | 0.87016 | 1.80E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90966.t1 | MTR_4g074030 | 90.177 | 509 | 50 | 0 | 1 | 509 | 1 | 509 | 0.0 | 958 |
| MS.gene90966.t1 | MTR_8g080870 | 60.887 | 496 | 178 | 8 | 25 | 514 | 2 | 487 | 0.0 | 577 |
| MS.gene90966.t1 | MTR_8g080880 | 58.893 | 506 | 193 | 8 | 7 | 507 | 13 | 508 | 0.0 | 573 |
| MS.gene90966.t1 | MTR_8g080890 | 59.325 | 504 | 190 | 8 | 9 | 507 | 16 | 509 | 0.0 | 569 |
| MS.gene90966.t1 | MTR_8g097220 | 58.250 | 503 | 194 | 9 | 12 | 508 | 15 | 507 | 0.0 | 567 |
| MS.gene90966.t1 | MTR_8g080840 | 59.163 | 502 | 190 | 8 | 11 | 507 | 17 | 508 | 0.0 | 565 |
| MS.gene90966.t1 | MTR_4g073970 | 89.869 | 306 | 31 | 0 | 198 | 503 | 1 | 306 | 0.0 | 565 |
| MS.gene90966.t1 | MTR_4g073980 | 80.571 | 175 | 21 | 2 | 1 | 174 | 1 | 163 | 8.08e-95 | 286 |
| MS.gene90966.t1 | MTR_8g095600 | 33.333 | 237 | 148 | 4 | 34 | 269 | 162 | 389 | 5.44e-30 | 123 |
| MS.gene90966.t1 | MTR_8g095600 | 33.333 | 237 | 148 | 4 | 34 | 269 | 162 | 389 | 1.59e-29 | 122 |
| MS.gene90966.t1 | MTR_8g095600 | 33.333 | 237 | 148 | 4 | 34 | 269 | 162 | 389 | 2.79e-29 | 122 |
| MS.gene90966.t1 | MTR_8g095600 | 33.333 | 237 | 148 | 4 | 34 | 269 | 178 | 405 | 3.30e-29 | 122 |
| MS.gene90966.t1 | MTR_3g048950 | 28.287 | 502 | 323 | 15 | 33 | 508 | 41 | 531 | 2.26e-27 | 115 |
| MS.gene90966.t1 | MTR_2g010180 | 24.777 | 448 | 304 | 10 | 76 | 511 | 175 | 601 | 2.89e-24 | 107 |
| MS.gene90966.t1 | MTR_2g010180 | 24.777 | 448 | 304 | 10 | 76 | 511 | 189 | 615 | 2.91e-24 | 107 |
| MS.gene90966.t1 | MTR_2g010180 | 25.346 | 434 | 292 | 9 | 76 | 498 | 175 | 587 | 6.31e-24 | 105 |
| MS.gene90966.t1 | MTR_8g080850 | 65.278 | 72 | 24 | 1 | 436 | 507 | 1 | 71 | 7.69e-23 | 92.8 |
| MS.gene90966.t1 | MTR_3g096980 | 26.962 | 497 | 314 | 16 | 34 | 510 | 135 | 602 | 1.58e-19 | 92.4 |
| MS.gene90966.t1 | MTR_8g094740 | 25.451 | 499 | 319 | 14 | 34 | 510 | 136 | 603 | 1.48e-17 | 86.3 |
| MS.gene90966.t1 | MTR_1g082750 | 35.606 | 132 | 75 | 3 | 132 | 259 | 63 | 188 | 1.46e-13 | 73.2 |
| MS.gene90966.t1 | MTR_8g094740 | 27.731 | 238 | 163 | 3 | 34 | 267 | 136 | 368 | 5.12e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90966.t1 | AT4G34880 | 57.831 | 498 | 197 | 3 | 12 | 507 | 22 | 508 | 0.0 | 550 |
| MS.gene90966.t1 | AT4G34880 | 51.205 | 498 | 184 | 4 | 12 | 507 | 22 | 462 | 2.50e-170 | 489 |
| MS.gene90966.t1 | AT3G25660 | 26.471 | 544 | 324 | 17 | 9 | 508 | 21 | 532 | 1.03e-25 | 110 |
| MS.gene90966.t1 | AT5G07360 | 31.967 | 244 | 156 | 4 | 34 | 276 | 204 | 438 | 1.27e-25 | 111 |
| MS.gene90966.t1 | AT5G07360 | 31.967 | 244 | 156 | 4 | 34 | 276 | 204 | 438 | 1.27e-25 | 111 |
| MS.gene90966.t1 | AT5G64440 | 26.498 | 434 | 275 | 12 | 95 | 511 | 195 | 601 | 3.47e-23 | 103 |
| MS.gene90966.t1 | AT5G07360 | 31.557 | 244 | 150 | 5 | 34 | 276 | 204 | 431 | 3.04e-22 | 100 |
| MS.gene90966.t1 | AT1G08980 | 38.333 | 120 | 67 | 2 | 132 | 250 | 64 | 177 | 6.66e-13 | 71.2 |
Find 126 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAAATACATACTAAAAT+AGG | 0.142863 | 4.2:-34655498 | None:intergenic |
| GGAAGCCGGTGCCATTATTC+TGG | 0.250921 | 4.2:+34654083 | MS.gene90966:CDS |
| TGCAACAGTGGTGGATAATT+TGG | 0.256591 | 4.2:+34655317 | MS.gene90966:CDS |
| TGCTTCTTGTATGTCTTCTA+TGG | 0.260952 | 4.2:-34653767 | None:intergenic |
| AGTGACATTGGATCCTTTAT+AGG | 0.290749 | 4.2:-34655078 | None:intergenic |
| AGAAAATTTAAGCACCGTTC+TGG | 0.305636 | 4.2:+34655344 | MS.gene90966:CDS |
| CCTCTGGCGCACCAAGCTTC+TGG | 0.314745 | 4.2:-34654153 | None:intergenic |
| TTTGTAGCTTCATAATCTCT+TGG | 0.332598 | 4.2:-34654951 | None:intergenic |
| CGCATGTGGTTTCGAAGTTA+AGG | 0.337143 | 4.2:+34654061 | MS.gene90966:CDS |
| AGCAGGTTCTTATGCATTGT+TGG | 0.339619 | 4.2:+34654017 | MS.gene90966:CDS |
| ATGCCATTTGGAATCTGTTT+TGG | 0.346624 | 4.2:+34656029 | MS.gene90966:CDS |
| CAGGAAAAGACTAATGAGTA+TGG | 0.349839 | 4.2:+34655786 | MS.gene90966:intron |
| TCAGAAATGACAAGTGGAAT+TGG | 0.351271 | 4.2:+34655828 | MS.gene90966:CDS |
| TAACATGGTTGCAGTTTCAT+TGG | 0.354483 | 4.2:+34654628 | MS.gene90966:CDS |
| GGTCTCAATGGAAAGAAAAT+AGG | 0.357122 | 4.2:+34655029 | MS.gene90966:CDS |
| GTATCTTGACGAGGTGAAAT+TGG | 0.364768 | 4.2:-34654749 | None:intergenic |
| ATACTGTCCTTAAGCAAAAC+AGG | 0.367417 | 4.2:-34653967 | None:intergenic |
| CAATTTGAATTCTGAAAGTA+AGG | 0.368656 | 4.2:-34655394 | None:intergenic |
| AACATGGTTGCAGTTTCATT+GGG | 0.371572 | 4.2:+34654629 | MS.gene90966:CDS |
| CAGCACCAAGTATTGGATTC+AGG | 0.374125 | 4.2:-34653852 | None:intergenic |
| CATAAATACATACTAAAATA+GGG | 0.375693 | 4.2:-34655497 | None:intergenic |
| GCAGGTTCTTATGCATTGTT+GGG | 0.382233 | 4.2:+34654018 | MS.gene90966:CDS |
| GTGACATTGGATCCTTTATA+GGG | 0.389701 | 4.2:-34655077 | None:intergenic |
| CAATGTCACTTCCATCTTTG+AGG | 0.393004 | 4.2:+34655091 | MS.gene90966:CDS |
| TCCGCTTGATCTCGTGCGTC+AGG | 0.394866 | 4.2:-34653889 | None:intergenic |
| GCAGCTAAGTTTATACCTTC+AGG | 0.395988 | 4.2:+34654978 | MS.gene90966:CDS |
| AGTCCTTGCGGGTCTAGCTT+TGG | 0.397039 | 4.2:+34654584 | MS.gene90966:CDS |
| TTTGATAAAGAAGAATCAAT+TGG | 0.401016 | 4.2:+34655911 | MS.gene90966:CDS |
| TCTGAAACTGTCCTGCATAT+TGG | 0.401701 | 4.2:-34654891 | None:intergenic |
| TCCAATACTTGGTGCTGTAT+TGG | 0.406479 | 4.2:+34653858 | MS.gene90966:CDS |
| CTCAATAAACAAGGTCTCAA+TGG | 0.407744 | 4.2:+34655017 | MS.gene90966:CDS |
| CGTGACCGTTCGTCGCTTCA+TGG | 0.417518 | 4.2:+34653940 | MS.gene90966:CDS |
| TTGTAGCTTCATAATCTCTT+GGG | 0.418485 | 4.2:-34654950 | None:intergenic |
| CCACCGTTGGACTCACTAGT+AGG | 0.419110 | 4.2:+34654714 | MS.gene90966:CDS |
| CTAGTCTCTCGGAGTGGTAT+GGG | 0.419677 | 4.2:+34654112 | MS.gene90966:CDS |
| TCCAATACAGCACCAAGTAT+TGG | 0.423670 | 4.2:-34653859 | None:intergenic |
| CATGTTAGTTGCCACGGAAA+TGG | 0.427002 | 4.2:-34654612 | None:intergenic |
| CATTGAGACCTTGTTTATTG+AGG | 0.434452 | 4.2:-34655016 | None:intergenic |
| GCTTCTCCAATGTTGGCAAT+TGG | 0.439223 | 4.2:+34655960 | MS.gene90966:CDS |
| GCATGTGGTTTCGAAGTTAA+GGG | 0.442919 | 4.2:+34654062 | MS.gene90966:CDS |
| ACAACTGAATTGTGATCAGC+TGG | 0.450183 | 4.2:-34654680 | None:intergenic |
| CGCCAGAGGTGGATTTGCAT+TGG | 0.451539 | 4.2:+34654167 | MS.gene90966:CDS |
| CATGTGCTTGATGTAATTGT+TGG | 0.452305 | 4.2:+34654921 | MS.gene90966:CDS |
| GATAGCGAAGGAATGCCATT+TGG | 0.455549 | 4.2:+34656017 | MS.gene90966:CDS |
| TGGAGTCTAAAAGTCCTTGC+GGG | 0.463261 | 4.2:+34654573 | MS.gene90966:CDS |
| TCTCCAATGTTGGCAATTGG+AGG | 0.468557 | 4.2:+34655963 | MS.gene90966:CDS |
| GCTGATCACAATTCAGTTGT+CGG | 0.471714 | 4.2:+34654683 | MS.gene90966:CDS |
| ACTAGTCTCTCGGAGTGGTA+TGG | 0.475334 | 4.2:+34654111 | MS.gene90966:CDS |
| GATAAACTCAACACTTCAGC+AGG | 0.475725 | 4.2:+34654000 | MS.gene90966:CDS |
| CCAGCTGGGACAGTAATTGC+AGG | 0.476312 | 4.2:-34655990 | None:intergenic |
| ATGACAAGTGGAATTGGAAA+AGG | 0.477884 | 4.2:+34655834 | MS.gene90966:CDS |
| GAAGCCGGTGCCATTATTCT+GGG | 0.492758 | 4.2:+34654084 | MS.gene90966:CDS |
| CTCAAAGATGGAAGTGACAT+TGG | 0.496520 | 4.2:-34655090 | None:intergenic |
| CCTTCGCTATCATATCCAGC+TGG | 0.499262 | 4.2:-34656005 | None:intergenic |
| CTCTGATGCTTCTCCAATGT+TGG | 0.503905 | 4.2:+34655953 | MS.gene90966:CDS |
| CATTTCCGTGGCAACTAACA+TGG | 0.505544 | 4.2:+34654613 | MS.gene90966:CDS |
| TTATGCATTGTTGGGATCGA+AGG | 0.506206 | 4.2:+34654026 | MS.gene90966:CDS |
| ATTGAGATGGTCCTCAAAGA+TGG | 0.506790 | 4.2:-34655102 | None:intergenic |
| TGGAGAAGCATCAGAGCCTA+TGG | 0.512587 | 4.2:-34655946 | None:intergenic |
| GAATCAATTGGATGCAGTGT+TGG | 0.513137 | 4.2:+34655923 | MS.gene90966:CDS |
| AACCAATGCAAATCCACCTC+TGG | 0.519518 | 4.2:-34654169 | None:intergenic |
| CCACCAAAACAGATTCCAAA+TGG | 0.522144 | 4.2:-34656032 | None:intergenic |
| GAGGGGTGGCTTCCTTGTCC+TGG | 0.523166 | 4.2:-34656111 | None:intergenic |
| AATGTCCTGAATCCAATACT+TGG | 0.527368 | 4.2:+34653847 | MS.gene90966:CDS |
| TCACCTCGTCAAGATACTAT+CGG | 0.527519 | 4.2:+34654755 | MS.gene90966:CDS |
| TACCCTCCAATTGCCAACAT+TGG | 0.534176 | 4.2:-34655966 | None:intergenic |
| GTGACCGTTCGTCGCTTCAT+GGG | 0.534661 | 4.2:+34653941 | MS.gene90966:CDS |
| GAAGCTTGGTGCGCCAGAGG+TGG | 0.536770 | 4.2:+34654156 | MS.gene90966:CDS |
| TGCAACCATGTTAGTTGCCA+CGG | 0.536982 | 4.2:-34654618 | None:intergenic |
| CACCTCGTCAAGATACTATC+GGG | 0.539125 | 4.2:+34654756 | MS.gene90966:CDS |
| CGCACGAGATCAAGCGGACA+AGG | 0.540357 | 4.2:+34653894 | MS.gene90966:CDS |
| TTGGATGCAGTGTTGGCCAT+AGG | 0.542689 | 4.2:+34655930 | MS.gene90966:CDS |
| AAAGACTAATGAGTATGGGC+AGG | 0.545033 | 4.2:+34655791 | MS.gene90966:CDS |
| TGTTATGCAGAATCCTTATG+TGG | 0.546341 | 4.2:+34654553 | MS.gene90966:intron |
| GTTTCGAAGTTAAGGGAAGC+CGG | 0.553804 | 4.2:+34654069 | MS.gene90966:CDS |
| CCTGCAATTACTGTCCCAGC+TGG | 0.555232 | 4.2:+34655990 | MS.gene90966:CDS |
| GGTTCCACGTGACGCGCATG+TGG | 0.563814 | 4.2:+34654047 | MS.gene90966:CDS |
| TCCTGACGCACGAGATCAAG+CGG | 0.566699 | 4.2:+34653888 | MS.gene90966:CDS |
| CACCGTTGGACTCACTAGTA+GGG | 0.568104 | 4.2:+34654715 | MS.gene90966:CDS |
| CTAACACTGTGCCAGAAGCT+TGG | 0.569014 | 4.2:+34654142 | MS.gene90966:CDS |
| CTCCAATGTTGGCAATTGGA+GGG | 0.574109 | 4.2:+34655964 | MS.gene90966:CDS |
| CCAGAAGCTTGGTGCGCCAG+AGG | 0.575202 | 4.2:+34654153 | MS.gene90966:CDS |
| TCATTTCACCACTTTGAAGA+GGG | 0.576827 | 4.2:-34655368 | None:intergenic |
| TCTGGGGAAAACTAGTCTCT+CGG | 0.577590 | 4.2:+34654101 | MS.gene90966:CDS |
| AATTGAAGCTATGAAGATGA+TGG | 0.579430 | 4.2:+34655860 | MS.gene90966:CDS |
| ATCATTTCACCACTTTGAAG+AGG | 0.579767 | 4.2:-34655369 | None:intergenic |
| TTTACCTCAACACATTGAGA+TGG | 0.579955 | 4.2:-34655115 | None:intergenic |
| GTCGGAATCAAGCCCACCGT+TGG | 0.580429 | 4.2:+34654701 | MS.gene90966:CDS |
| CTTCGCTATCATATCCAGCT+GGG | 0.583149 | 4.2:-34656004 | None:intergenic |
| GTTGGACTCACTAGTAGGGC+TGG | 0.583241 | 4.2:+34654719 | MS.gene90966:CDS |
| ATCTCAGCTAGAGACTTCAC+AGG | 0.586005 | 4.2:-34655453 | None:intergenic |
| TTGAGCAAGCTACCAGGACA+AGG | 0.587838 | 4.2:+34656099 | MS.gene90966:CDS |
| TTTCCCCAGAATAATGGCAC+CGG | 0.588790 | 4.2:-34654088 | None:intergenic |
| AGGAAAAGACTAATGAGTAT+GGG | 0.589935 | 4.2:+34655787 | MS.gene90966:intron |
| TGAAGTGTTGAGTTTATCAA+AGG | 0.598308 | 4.2:-34653995 | None:intergenic |
| AGGACCATCTCAATGTGTTG+AGG | 0.598729 | 4.2:+34655111 | MS.gene90966:CDS |
| TAGTCTCTCGGAGTGGTATG+GGG | 0.603289 | 4.2:+34654113 | MS.gene90966:CDS |
| GCTAAGTTTATACCTTCAGG+TGG | 0.620054 | 4.2:+34654981 | MS.gene90966:CDS |
| ATATGCAAATCAAGACAAAG+AGG | 0.620679 | 4.2:+34655294 | MS.gene90966:intron |
| ACAAAGAGGTGCAACAGTGG+TGG | 0.621804 | 4.2:+34655308 | MS.gene90966:CDS |
| GAAACCACATGCGCGTCACG+TGG | 0.622406 | 4.2:-34654051 | None:intergenic |
| ATGGCATCAGAAATGACAAG+TGG | 0.628000 | 4.2:+34655822 | MS.gene90966:CDS |
| GTGGAGTCTAAAAGTCCTTG+CGG | 0.628103 | 4.2:+34654572 | MS.gene90966:CDS |
| CTTTGGATCAGCCATTTCCG+TGG | 0.628679 | 4.2:+34654601 | MS.gene90966:CDS |
| CCAGCTGGATATGATAGCGA+AGG | 0.637953 | 4.2:+34656005 | MS.gene90966:CDS |
| AAGACAAAGAGGTGCAACAG+TGG | 0.638746 | 4.2:+34655305 | MS.gene90966:intron |
| TCATGTGTGAATGAAAAGCG+AGG | 0.639049 | 4.2:-34656130 | None:intergenic |
| ACATGGTTGCAGTTTCATTG+GGG | 0.641691 | 4.2:+34654630 | MS.gene90966:CDS |
| GATCCAAAGCTAGACCCGCA+AGG | 0.645373 | 4.2:-34654587 | None:intergenic |
| CTACTAGTGAGTCCAACGGT+GGG | 0.650363 | 4.2:-34654713 | None:intergenic |
| TACTGTCCTTAAGCAAAACA+GGG | 0.655683 | 4.2:-34653966 | None:intergenic |
| AAGCAATTCCTCAATAAACA+AGG | 0.659450 | 4.2:+34655008 | MS.gene90966:CDS |
| GTTCTGGACCCTCTTCAAAG+TGG | 0.660370 | 4.2:+34655360 | MS.gene90966:CDS |
| CATGTGTGAATGAAAAGCGA+GGG | 0.669751 | 4.2:-34656129 | None:intergenic |
| AATTGCTTATAACCACCTGA+AGG | 0.670396 | 4.2:-34654993 | None:intergenic |
| GGATCCCATGAAGCGACGAA+CGG | 0.674015 | 4.2:-34653945 | None:intergenic |
| CCTACTAGTGAGTCCAACGG+TGG | 0.675556 | 4.2:-34654714 | None:intergenic |
| AAGCCGGTGCCATTATTCTG+GGG | 0.694883 | 4.2:+34654085 | MS.gene90966:CDS |
| TCATTGGGGACAGAAACTGA+TGG | 0.695584 | 4.2:+34654644 | MS.gene90966:CDS |
| TGTGAATGAAAAGCGAGGGG+TGG | 0.698305 | 4.2:-34656125 | None:intergenic |
| AGCCCTACTAGTGAGTCCAA+CGG | 0.702539 | 4.2:-34654717 | None:intergenic |
| CAACTGAATTGTGATCAGCT+GGG | 0.702745 | 4.2:-34654679 | None:intergenic |
| ACTTTGAAGAGGGTCCAGAA+CGG | 0.708246 | 4.2:-34655358 | None:intergenic |
| ATGTGTGAATGAAAAGCGAG+GGG | 0.754399 | 4.2:-34656128 | None:intergenic |
| TACCCGATAGTATCTTGACG+AGG | 0.755148 | 4.2:-34654758 | None:intergenic |
| GGAAAACTAGTCTCTCGGAG+TGG | 0.758159 | 4.2:+34654106 | MS.gene90966:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAAATACATACTAAAAT+AGG | - | chr4.2:34655501-34655520 | None:intergenic | 15.0% |
| !! | ATATAATAAAACAGACAAAA+TGG | - | chr4.2:34655278-34655297 | None:intergenic | 15.0% |
| !! | CATAAATACATACTAAAATA+GGG | - | chr4.2:34655500-34655519 | None:intergenic | 15.0% |
| !!! | GATTTAGAATTTAATTACAT+TGG | + | chr4.2:34654387-34654406 | MS.gene90966:intron | 15.0% |
| !!! | TATATATATATATTTTGCAC+AGG | + | chr4.2:34654868-34654887 | MS.gene90966:intron | 15.0% |
| !! | AAATTTAGCATTAAATAGAG+TGG | + | chr4.2:34654415-34654434 | MS.gene90966:intron | 20.0% |
| !! | GATAGTTATAATGCATAATA+GGG | - | chr4.2:34655671-34655690 | None:intergenic | 20.0% |
| !! | TAACATGTTAACTTTGATAT+TGG | + | chr4.2:34654275-34654294 | MS.gene90966:intron | 20.0% |
| !! | TTTGATAAAGAAGAATCAAT+TGG | + | chr4.2:34655911-34655930 | MS.gene90966:CDS | 20.0% |
| !!! | ATTATAATTAACTTGAGCTA+AGG | - | chr4.2:34655592-34655611 | None:intergenic | 20.0% |
| !!! | ATTCCCACATTTAAAATTAA+AGG | - | chr4.2:34654843-34654862 | None:intergenic | 20.0% |
| !!! | GTGTTTTATAATATTTTGCT+CGG | + | chr4.2:34655724-34655743 | MS.gene90966:intron | 20.0% |
| !!! | TTCCCACATTTAAAATTAAA+GGG | - | chr4.2:34654842-34654861 | None:intergenic | 20.0% |
| ! | AATTCCTCATGAAATAGAAT+AGG | + | chr4.2:34654220-34654239 | MS.gene90966:intron | 25.0% |
| ! | GGATAGTTATAATGCATAAT+AGG | - | chr4.2:34655672-34655691 | None:intergenic | 25.0% |
| ! | GTCATTCAAAAAGAATTAAG+AGG | - | chr4.2:34655528-34655547 | None:intergenic | 25.0% |
| ! | TGATATGATAACTTTGACAT+TGG | + | chr4.2:34654469-34654488 | MS.gene90966:intron | 25.0% |
| !! | ATATTTTGCTCGGTTTAATT+TGG | + | chr4.2:34655734-34655753 | MS.gene90966:intron | 25.0% |
| !! | CAATTTGAATTCTGAAAGTA+AGG | - | chr4.2:34655397-34655416 | None:intergenic | 25.0% |
| !!! | TGCCCTTTAATTTTAAATGT+GGG | + | chr4.2:34654837-34654856 | MS.gene90966:intron | 25.0% |
| !!! | TTGCCCTTTAATTTTAAATG+TGG | + | chr4.2:34654836-34654855 | MS.gene90966:intron | 25.0% |
| AAGCAATTCCTCAATAAACA+AGG | + | chr4.2:34655008-34655027 | MS.gene90966:CDS | 30.0% | |
| AATTGAAGCTATGAAGATGA+TGG | + | chr4.2:34655860-34655879 | MS.gene90966:CDS | 30.0% | |
| AGGAAAAGACTAATGAGTAT+GGG | + | chr4.2:34655787-34655806 | MS.gene90966:intron | 30.0% | |
| ATATGCAAATCAAGACAAAG+AGG | + | chr4.2:34655294-34655313 | MS.gene90966:intron | 30.0% | |
| CAATCCTATTCTATTTCATG+AGG | - | chr4.2:34654227-34654246 | None:intergenic | 30.0% | |
| CCTTTATAGGGAATCAAAAA+TGG | - | chr4.2:34655068-34655087 | None:intergenic | 30.0% | |
| TTGTAGCTTCATAATCTCTT+GGG | - | chr4.2:34654953-34654972 | None:intergenic | 30.0% | |
| TTTGGTTGTTGATCTGTTTA+TGG | + | chr4.2:34655752-34655771 | MS.gene90966:intron | 30.0% | |
| TTTGTAGCTTCATAATCTCT+TGG | - | chr4.2:34654954-34654973 | None:intergenic | 30.0% | |
| ! | GAAAGAAAATAGGTGTTTTG+AGG | + | chr4.2:34655039-34655058 | MS.gene90966:CDS | 30.0% |
| !! | CCATTTTTGATTCCCTATAA+AGG | + | chr4.2:34655065-34655084 | MS.gene90966:CDS | 30.0% |
| !! | TGAAGTGTTGAGTTTATCAA+AGG | - | chr4.2:34653998-34654017 | None:intergenic | 30.0% |
| AACATGGTTGCAGTTTCATT+GGG | + | chr4.2:34654629-34654648 | MS.gene90966:CDS | 35.0% | |
| AATGTCCTGAATCCAATACT+TGG | + | chr4.2:34653847-34653866 | MS.gene90966:CDS | 35.0% | |
| AATTGCTTATAACCACCTGA+AGG | - | chr4.2:34654996-34655015 | None:intergenic | 35.0% | |
| AGAATCAATGACCAATTGAG+GGG | - | chr4.2:34655169-34655188 | None:intergenic | 35.0% | |
| AGTGACATTGGATCCTTTAT+AGG | - | chr4.2:34655081-34655100 | None:intergenic | 35.0% | |
| ATACTGTCCTTAAGCAAAAC+AGG | - | chr4.2:34653970-34653989 | None:intergenic | 35.0% | |
| ATGACAAGTGGAATTGGAAA+AGG | + | chr4.2:34655834-34655853 | MS.gene90966:CDS | 35.0% | |
| ATGGAGCAGTTGTCAAAAAA+TGG | + | chr4.2:34655879-34655898 | MS.gene90966:CDS | 35.0% | |
| CAGGAAAAGACTAATGAGTA+TGG | + | chr4.2:34655786-34655805 | MS.gene90966:intron | 35.0% | |
| CATGTGCTTGATGTAATTGT+TGG | + | chr4.2:34654921-34654940 | MS.gene90966:CDS | 35.0% | |
| CTCAATAAACAAGGTCTCAA+TGG | + | chr4.2:34655017-34655036 | MS.gene90966:CDS | 35.0% | |
| GAGAATCAATGACCAATTGA+GGG | - | chr4.2:34655170-34655189 | None:intergenic | 35.0% | |
| GGTCTCAATGGAAAGAAAAT+AGG | + | chr4.2:34655029-34655048 | MS.gene90966:CDS | 35.0% | |
| GTGACATTGGATCCTTTATA+GGG | - | chr4.2:34655080-34655099 | None:intergenic | 35.0% | |
| TAACATGGTTGCAGTTTCAT+TGG | + | chr4.2:34654628-34654647 | MS.gene90966:CDS | 35.0% | |
| TACTGTCCTTAAGCAAAACA+GGG | - | chr4.2:34653969-34653988 | None:intergenic | 35.0% | |
| TCAGAAATGACAAGTGGAAT+TGG | + | chr4.2:34655828-34655847 | MS.gene90966:CDS | 35.0% | |
| TGAGAATCAATGACCAATTG+AGG | - | chr4.2:34655171-34655190 | None:intergenic | 35.0% | |
| TGCTTCTTGTATGTCTTCTA+TGG | - | chr4.2:34653770-34653789 | None:intergenic | 35.0% | |
| TGGAGCAGTTGTCAAAAAAT+GGG | + | chr4.2:34655880-34655899 | MS.gene90966:CDS | 35.0% | |
| TGTTATGCAGAATCCTTATG+TGG | + | chr4.2:34654553-34654572 | MS.gene90966:intron | 35.0% | |
| TTTACCTCAACACATTGAGA+TGG | - | chr4.2:34655118-34655137 | None:intergenic | 35.0% | |
| ! | AGAAAATTTAAGCACCGTTC+TGG | + | chr4.2:34655344-34655363 | MS.gene90966:CDS | 35.0% |
| ! | ATCATTTCACCACTTTGAAG+AGG | - | chr4.2:34655372-34655391 | None:intergenic | 35.0% |
| ! | CATTGAGACCTTGTTTATTG+AGG | - | chr4.2:34655019-34655038 | None:intergenic | 35.0% |
| ! | GTTTATGGTTTTCTTGTGAC+AGG | + | chr4.2:34655767-34655786 | MS.gene90966:intron | 35.0% |
| ! | TCATTTCACCACTTTGAAGA+GGG | - | chr4.2:34655371-34655390 | None:intergenic | 35.0% |
| !! | ATGCCATTTGGAATCTGTTT+TGG | + | chr4.2:34656029-34656048 | MS.gene90966:CDS | 35.0% |
| !!! | AATCTGTTTTGGTGGGTTAA+AGG | + | chr4.2:34656040-34656059 | MS.gene90966:CDS | 35.0% |
| !!! | ACTAGTTTTCCCCAGAATAA+TGG | - | chr4.2:34654097-34654116 | None:intergenic | 35.0% |
| !!! | ATCTGTTTTGGTGGGTTAAA+GGG | + | chr4.2:34656041-34656060 | MS.gene90966:CDS | 35.0% |
| !!! | CATTTGGAATCTGTTTTGGT+GGG | + | chr4.2:34656033-34656052 | MS.gene90966:CDS | 35.0% |
| !!! | GTATGGGCAGGATTTTTTTA+TGG | + | chr4.2:34655803-34655822 | MS.gene90966:CDS | 35.0% |
| AAAGACTAATGAGTATGGGC+AGG | + | chr4.2:34655791-34655810 | MS.gene90966:CDS | 40.0% | |
| AAAGGGCAAAACTACATCAG+AGG | - | chr4.2:34654825-34654844 | None:intergenic | 40.0% | |
| ACAACTGAATTGTGATCAGC+TGG | - | chr4.2:34654683-34654702 | None:intergenic | 40.0% | |
| ACATGGTTGCAGTTTCATTG+GGG | + | chr4.2:34654630-34654649 | MS.gene90966:CDS | 40.0% | |
| ACCAGACATGACACTAGAAT+AGG | - | chr4.2:34655694-34655713 | None:intergenic | 40.0% | |
| AGCAGGTTCTTATGCATTGT+TGG | + | chr4.2:34654017-34654036 | MS.gene90966:CDS | 40.0% | |
| ATGGCATCAGAAATGACAAG+TGG | + | chr4.2:34655822-34655841 | MS.gene90966:CDS | 40.0% | |
| ATGTGTGAATGAAAAGCGAG+GGG | - | chr4.2:34656131-34656150 | None:intergenic | 40.0% | |
| ATTGAGATGGTCCTCAAAGA+TGG | - | chr4.2:34655105-34655124 | None:intergenic | 40.0% | |
| CAACTGAATTGTGATCAGCT+GGG | - | chr4.2:34654682-34654701 | None:intergenic | 40.0% | |
| CATGTGTGAATGAAAAGCGA+GGG | - | chr4.2:34656132-34656151 | None:intergenic | 40.0% | |
| CCACCAAAACAGATTCCAAA+TGG | - | chr4.2:34656035-34656054 | None:intergenic | 40.0% | |
| CCAGACATGACACTAGAATA+GGG | - | chr4.2:34655693-34655712 | None:intergenic | 40.0% | |
| CTCAAAGATGGAAGTGACAT+TGG | - | chr4.2:34655093-34655112 | None:intergenic | 40.0% | |
| GAATCAATTGGATGCAGTGT+TGG | + | chr4.2:34655923-34655942 | MS.gene90966:CDS | 40.0% | |
| GATAAACTCAACACTTCAGC+AGG | + | chr4.2:34654000-34654019 | MS.gene90966:CDS | 40.0% | |
| GCAGCTAAGTTTATACCTTC+AGG | + | chr4.2:34654978-34654997 | MS.gene90966:CDS | 40.0% | |
| GCAGGTTCTTATGCATTGTT+GGG | + | chr4.2:34654018-34654037 | MS.gene90966:CDS | 40.0% | |
| GCATGTGGTTTCGAAGTTAA+GGG | + | chr4.2:34654062-34654081 | MS.gene90966:CDS | 40.0% | |
| GCTAAGGTATAAGCAGTTTG+AGG | - | chr4.2:34655576-34655595 | None:intergenic | 40.0% | |
| GCTAAGTTTATACCTTCAGG+TGG | + | chr4.2:34654981-34655000 | MS.gene90966:CDS | 40.0% | |
| GCTGATCACAATTCAGTTGT+CGG | + | chr4.2:34654683-34654702 | MS.gene90966:CDS | 40.0% | |
| GTATCTTGACGAGGTGAAAT+TGG | - | chr4.2:34654752-34654771 | None:intergenic | 40.0% | |
| TCACCTCGTCAAGATACTAT+CGG | + | chr4.2:34654755-34654774 | MS.gene90966:CDS | 40.0% | |
| TCATGTGTGAATGAAAAGCG+AGG | - | chr4.2:34656133-34656152 | None:intergenic | 40.0% | |
| TCCAATACAGCACCAAGTAT+TGG | - | chr4.2:34653862-34653881 | None:intergenic | 40.0% | |
| TTATGCATTGTTGGGATCGA+AGG | + | chr4.2:34654026-34654045 | MS.gene90966:CDS | 40.0% | |
| ! | ATGATTTTGAGCAAGCTACC+AGG | + | chr4.2:34656093-34656112 | MS.gene90966:CDS | 40.0% |
| ! | CAATGTCACTTCCATCTTTG+AGG | + | chr4.2:34655091-34655110 | MS.gene90966:CDS | 40.0% |
| ! | GGACTTTTAGACTCCACATA+AGG | - | chr4.2:34654569-34654588 | None:intergenic | 40.0% |
| ! | TCTGAAACTGTCCTGCATAT+TGG | - | chr4.2:34654894-34654913 | None:intergenic | 40.0% |
| !! | CCATTTGGAATCTGTTTTGG+TGG | + | chr4.2:34656032-34656051 | MS.gene90966:CDS | 40.0% |
| !! | TCCAATACTTGGTGCTGTAT+TGG | + | chr4.2:34653858-34653877 | MS.gene90966:CDS | 40.0% |
| !! | TGCAACAGTGGTGGATAATT+TGG | + | chr4.2:34655317-34655336 | MS.gene90966:CDS | 40.0% |
| AACCAATGCAAATCCACCTC+TGG | - | chr4.2:34654172-34654191 | None:intergenic | 45.0% | |
| AGGACCATCTCAATGTGTTG+AGG | + | chr4.2:34655111-34655130 | MS.gene90966:CDS | 45.0% | |
| ATCTCAGCTAGAGACTTCAC+AGG | - | chr4.2:34655456-34655475 | None:intergenic | 45.0% | |
| CACCTCGTCAAGATACTATC+GGG | + | chr4.2:34654756-34654775 | MS.gene90966:CDS | 45.0% | |
| CATAACACACACCCCTCAAT+TGG | + | chr4.2:34655155-34655174 | MS.gene90966:intron | 45.0% | |
| CATGTTAGTTGCCACGGAAA+TGG | - | chr4.2:34654615-34654634 | None:intergenic | 45.0% | |
| CATTTCCGTGGCAACTAACA+TGG | + | chr4.2:34654613-34654632 | MS.gene90966:CDS | 45.0% | |
| CCCTATTCTAGTGTCATGTC+TGG | + | chr4.2:34655690-34655709 | MS.gene90966:intron | 45.0% | |
| CGCATGTGGTTTCGAAGTTA+AGG | + | chr4.2:34654061-34654080 | MS.gene90966:CDS | 45.0% | |
| CTCCAATGTTGGCAATTGGA+GGG | + | chr4.2:34655964-34655983 | MS.gene90966:CDS | 45.0% | |
| CTCTGATGCTTCTCCAATGT+TGG | + | chr4.2:34655953-34655972 | MS.gene90966:CDS | 45.0% | |
| CTTCGCTATCATATCCAGCT+GGG | - | chr4.2:34656007-34656026 | None:intergenic | 45.0% | |
| GATAGCGAAGGAATGCCATT+TGG | + | chr4.2:34656017-34656036 | MS.gene90966:CDS | 45.0% | |
| GCTTCTCCAATGTTGGCAAT+TGG | + | chr4.2:34655960-34655979 | MS.gene90966:CDS | 45.0% | |
| GTGGAGTCTAAAAGTCCTTG+CGG | + | chr4.2:34654572-34654591 | MS.gene90966:CDS | 45.0% | |
| GTTTCGAAGTTAAGGGAAGC+CGG | + | chr4.2:34654069-34654088 | MS.gene90966:CDS | 45.0% | |
| TACCCGATAGTATCTTGACG+AGG | - | chr4.2:34654761-34654780 | None:intergenic | 45.0% | |
| TACCCTCCAATTGCCAACAT+TGG | - | chr4.2:34655969-34655988 | None:intergenic | 45.0% | |
| TCATTGGGGACAGAAACTGA+TGG | + | chr4.2:34654644-34654663 | MS.gene90966:CDS | 45.0% | |
| TCTCCAATGTTGGCAATTGG+AGG | + | chr4.2:34655963-34655982 | MS.gene90966:CDS | 45.0% | |
| TGCAACCATGTTAGTTGCCA+CGG | - | chr4.2:34654621-34654640 | None:intergenic | 45.0% | |
| TGGAGTCTAAAAGTCCTTGC+GGG | + | chr4.2:34654573-34654592 | MS.gene90966:CDS | 45.0% | |
| TTTCCCCAGAATAATGGCAC+CGG | - | chr4.2:34654091-34654110 | None:intergenic | 45.0% | |
| ! | AAGACAAAGAGGTGCAACAG+TGG | + | chr4.2:34655305-34655324 | MS.gene90966:intron | 45.0% |
| ! | ACTTTGAAGAGGGTCCAGAA+CGG | - | chr4.2:34655361-34655380 | None:intergenic | 45.0% |
| ! | TCTGGGGAAAACTAGTCTCT+CGG | + | chr4.2:34654101-34654120 | MS.gene90966:CDS | 45.0% |
| ! | TGGGATCCCTGTTTTGCTTA+AGG | + | chr4.2:34653960-34653979 | MS.gene90966:CDS | 45.0% |
| ! | TTTTGCACAGGCCAATATGC+AGG | + | chr4.2:34654880-34654899 | MS.gene90966:intron | 45.0% |
| !! | CAGCACCAAGTATTGGATTC+AGG | - | chr4.2:34653855-34653874 | None:intergenic | 45.0% |
| AGCCCTACTAGTGAGTCCAA+CGG | - | chr4.2:34654720-34654739 | None:intergenic | 50.0% | |
| CACCGTTGGACTCACTAGTA+GGG | + | chr4.2:34654715-34654734 | MS.gene90966:CDS | 50.0% | |
| CCTTCGCTATCATATCCAGC+TGG | - | chr4.2:34656008-34656027 | None:intergenic | 50.0% | |
| CTAACACTGTGCCAGAAGCT+TGG | + | chr4.2:34654142-34654161 | MS.gene90966:CDS | 50.0% | |
| CTACTAGTGAGTCCAACGGT+GGG | - | chr4.2:34654716-34654735 | None:intergenic | 50.0% | |
| CTAGTCTCTCGGAGTGGTAT+GGG | + | chr4.2:34654112-34654131 | MS.gene90966:CDS | 50.0% | |
| CTTTGGATCAGCCATTTCCG+TGG | + | chr4.2:34654601-34654620 | MS.gene90966:CDS | 50.0% | |
| TAGTCTCTCGGAGTGGTATG+GGG | + | chr4.2:34654113-34654132 | MS.gene90966:CDS | 50.0% | |
| TGTGAATGAAAAGCGAGGGG+TGG | - | chr4.2:34656128-34656147 | None:intergenic | 50.0% | |
| TTGAGCAAGCTACCAGGACA+AGG | + | chr4.2:34656099-34656118 | MS.gene90966:CDS | 50.0% | |
| ! | ACAAAGAGGTGCAACAGTGG+TGG | + | chr4.2:34655308-34655327 | MS.gene90966:CDS | 50.0% |
| ! | ACTAGTCTCTCGGAGTGGTA+TGG | + | chr4.2:34654111-34654130 | MS.gene90966:CDS | 50.0% |
| ! | CCAGCTGGATATGATAGCGA+AGG | + | chr4.2:34656005-34656024 | MS.gene90966:CDS | 50.0% |
| ! | GGAAAACTAGTCTCTCGGAG+TGG | + | chr4.2:34654106-34654125 | MS.gene90966:CDS | 50.0% |
| ! | GTTCTGGACCCTCTTCAAAG+TGG | + | chr4.2:34655360-34655379 | MS.gene90966:CDS | 50.0% |
| !! | AAGCCGGTGCCATTATTCTG+GGG | + | chr4.2:34654085-34654104 | MS.gene90966:CDS | 50.0% |
| !! | GAAGCCGGTGCCATTATTCT+GGG | + | chr4.2:34654084-34654103 | MS.gene90966:CDS | 50.0% |
| !! | TGGAGAAGCATCAGAGCCTA+TGG | - | chr4.2:34655949-34655968 | None:intergenic | 50.0% |
| !! | TTGGATGCAGTGTTGGCCAT+AGG | + | chr4.2:34655930-34655949 | MS.gene90966:CDS | 50.0% |
| CCACCGTTGGACTCACTAGT+AGG | + | chr4.2:34654714-34654733 | MS.gene90966:CDS | 55.0% | |
| CCAGCTGGGACAGTAATTGC+AGG | - | chr4.2:34655993-34656012 | None:intergenic | 55.0% | |
| CCTACTAGTGAGTCCAACGG+TGG | - | chr4.2:34654717-34654736 | None:intergenic | 55.0% | |
| CCTGCAATTACTGTCCCAGC+TGG | + | chr4.2:34655990-34656009 | MS.gene90966:CDS | 55.0% | |
| GATCCAAAGCTAGACCCGCA+AGG | - | chr4.2:34654590-34654609 | None:intergenic | 55.0% | |
| GGATCCCATGAAGCGACGAA+CGG | - | chr4.2:34653948-34653967 | None:intergenic | 55.0% | |
| GTGACCGTTCGTCGCTTCAT+GGG | + | chr4.2:34653941-34653960 | MS.gene90966:CDS | 55.0% | |
| GTTGGACTCACTAGTAGGGC+TGG | + | chr4.2:34654719-34654738 | MS.gene90966:CDS | 55.0% | |
| TCCTGACGCACGAGATCAAG+CGG | + | chr4.2:34653888-34653907 | MS.gene90966:CDS | 55.0% | |
| ! | AGTCCTTGCGGGTCTAGCTT+TGG | + | chr4.2:34654584-34654603 | MS.gene90966:CDS | 55.0% |
| ! | CGCCAGAGGTGGATTTGCAT+TGG | + | chr4.2:34654167-34654186 | MS.gene90966:CDS | 55.0% |
| !! | GGAAGCCGGTGCCATTATTC+TGG | + | chr4.2:34654083-34654102 | MS.gene90966:CDS | 55.0% |
| CGCACGAGATCAAGCGGACA+AGG | + | chr4.2:34653894-34653913 | MS.gene90966:CDS | 60.0% | |
| CGTGACCGTTCGTCGCTTCA+TGG | + | chr4.2:34653940-34653959 | MS.gene90966:CDS | 60.0% | |
| GAAACCACATGCGCGTCACG+TGG | - | chr4.2:34654054-34654073 | None:intergenic | 60.0% | |
| GTCGGAATCAAGCCCACCGT+TGG | + | chr4.2:34654701-34654720 | MS.gene90966:CDS | 60.0% | |
| TCCGCTTGATCTCGTGCGTC+AGG | - | chr4.2:34653892-34653911 | None:intergenic | 60.0% | |
| CCTCTGGCGCACCAAGCTTC+TGG | - | chr4.2:34654156-34654175 | None:intergenic | 65.0% | |
| GAGGGGTGGCTTCCTTGTCC+TGG | - | chr4.2:34656114-34656133 | None:intergenic | 65.0% | |
| GGTTCCACGTGACGCGCATG+TGG | + | chr4.2:34654047-34654066 | MS.gene90966:CDS | 65.0% | |
| !! | CCAGAAGCTTGGTGCGCCAG+AGG | + | chr4.2:34654153-34654172 | MS.gene90966:CDS | 65.0% |
| !! | GAAGCTTGGTGCGCCAGAGG+TGG | + | chr4.2:34654156-34654175 | MS.gene90966:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 34653667 | 34656163 | 34653667 | ID=MS.gene90966 |
| chr4.2 | mRNA | 34653667 | 34656163 | 34653667 | ID=MS.gene90966.t1;Parent=MS.gene90966 |
| chr4.2 | exon | 34653667 | 34654188 | 34653667 | ID=MS.gene90966.t1.exon1;Parent=MS.gene90966.t1 |
| chr4.2 | CDS | 34653667 | 34654188 | 34653667 | ID=cds.MS.gene90966.t1;Parent=MS.gene90966.t1 |
| chr4.2 | exon | 34654563 | 34654777 | 34654563 | ID=MS.gene90966.t1.exon2;Parent=MS.gene90966.t1 |
| chr4.2 | CDS | 34654563 | 34654777 | 34654563 | ID=cds.MS.gene90966.t1;Parent=MS.gene90966.t1 |
| chr4.2 | exon | 34654890 | 34655132 | 34654890 | ID=MS.gene90966.t1.exon3;Parent=MS.gene90966.t1 |
| chr4.2 | CDS | 34654890 | 34655132 | 34654890 | ID=cds.MS.gene90966.t1;Parent=MS.gene90966.t1 |
| chr4.2 | exon | 34655308 | 34655506 | 34655308 | ID=MS.gene90966.t1.exon4;Parent=MS.gene90966.t1 |
| chr4.2 | CDS | 34655308 | 34655506 | 34655308 | ID=cds.MS.gene90966.t1;Parent=MS.gene90966.t1 |
| chr4.2 | exon | 34655789 | 34656163 | 34655789 | ID=MS.gene90966.t1.exon5;Parent=MS.gene90966.t1 |
| chr4.2 | CDS | 34655789 | 34656163 | 34655789 | ID=cds.MS.gene90966.t1;Parent=MS.gene90966.t1 |
| Gene Sequence |
| Protein sequence |
