Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53003.t1 | XP_003590780.1 | 85.5 | 676 | 96 | 2 | 1 | 675 | 1 | 675 | 0.00E+00 | 1186.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53003.t1 | Q9SS87 | 23.8 | 707 | 446 | 24 | 36 | 666 | 39 | 728 | 7.9e-46 | 186.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53003.t1 | E2FKJ1 | 85.5 | 676 | 96 | 2 | 1 | 675 | 1 | 675 | 0.0e+00 | 1186.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049302 | MS.gene53003 | 0.811538 | 6.66E-51 | -1.69E-46 |
| MS.gene049418 | MS.gene53003 | 0.824581 | 7.47E-54 | -1.69E-46 |
| MS.gene050297 | MS.gene53003 | 0.802264 | 6.09E-49 | -1.69E-46 |
| MS.gene051067 | MS.gene53003 | 0.814836 | 1.26E-51 | -1.69E-46 |
| MS.gene051478 | MS.gene53003 | 0.804962 | 1.68E-49 | -1.69E-46 |
| MS.gene054118 | MS.gene53003 | 0.833915 | 4.05E-56 | -1.69E-46 |
| MS.gene055777 | MS.gene53003 | 0.811401 | 7.13E-51 | -1.69E-46 |
| MS.gene057897 | MS.gene53003 | 0.803674 | 3.11E-49 | -1.69E-46 |
| MS.gene058196 | MS.gene53003 | 0.806313 | 8.74E-50 | -1.69E-46 |
| MS.gene058197 | MS.gene53003 | 0.814384 | 1.58E-51 | -1.69E-46 |
| MS.gene058198 | MS.gene53003 | 0.813514 | 2.46E-51 | -1.69E-46 |
| MS.gene058823 | MS.gene53003 | 0.811416 | 7.08E-51 | -1.69E-46 |
| MS.gene058909 | MS.gene53003 | 0.852354 | 4.88E-61 | -1.69E-46 |
| MS.gene058912 | MS.gene53003 | 0.849294 | 3.55E-60 | -1.69E-46 |
| MS.gene059300 | MS.gene53003 | 0.839688 | 1.36E-57 | -1.69E-46 |
| MS.gene060547 | MS.gene53003 | 0.802726 | 4.89E-49 | -1.69E-46 |
| MS.gene060825 | MS.gene53003 | 0.834723 | 2.54E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53003.t1 | MTR_1g075170 | 86.243 | 676 | 91 | 2 | 1 | 675 | 1 | 675 | 0.0 | 1207 |
| MS.gene53003.t1 | MTR_1g075153 | 53.461 | 679 | 295 | 9 | 5 | 675 | 6 | 671 | 0.0 | 713 |
| MS.gene53003.t1 | MTR_1g075180 | 51.306 | 651 | 290 | 12 | 27 | 669 | 7 | 638 | 0.0 | 647 |
| MS.gene53003.t1 | MTR_1g040360 | 42.460 | 683 | 356 | 13 | 11 | 666 | 5 | 677 | 2.73e-169 | 501 |
| MS.gene53003.t1 | MTR_1g074990 | 31.454 | 674 | 397 | 18 | 31 | 669 | 20 | 663 | 1.88e-99 | 319 |
| MS.gene53003.t1 | MTR_1g074950 | 33.085 | 671 | 385 | 21 | 31 | 666 | 21 | 662 | 7.01e-99 | 318 |
| MS.gene53003.t1 | MTR_1g075095 | 30.060 | 672 | 405 | 17 | 31 | 666 | 20 | 662 | 8.60e-91 | 296 |
| MS.gene53003.t1 | MTR_1g075030 | 29.822 | 674 | 404 | 19 | 31 | 666 | 20 | 662 | 2.16e-90 | 295 |
| MS.gene53003.t1 | MTR_1g075230 | 30.194 | 669 | 414 | 19 | 31 | 669 | 20 | 665 | 2.02e-87 | 287 |
| MS.gene53003.t1 | MTR_7g032660 | 26.081 | 717 | 431 | 26 | 29 | 669 | 20 | 713 | 8.31e-52 | 191 |
| MS.gene53003.t1 | MTR_3g075450 | 26.591 | 707 | 411 | 30 | 36 | 665 | 29 | 704 | 1.21e-47 | 179 |
| MS.gene53003.t1 | MTR_8g089660 | 24.507 | 710 | 432 | 28 | 36 | 667 | 21 | 704 | 2.52e-43 | 166 |
| MS.gene53003.t1 | MTR_8g063020 | 35.135 | 222 | 121 | 6 | 81 | 301 | 29 | 228 | 7.84e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53003.t1 | AT3G01680 | 24.930 | 710 | 434 | 30 | 36 | 666 | 39 | 728 | 1.26e-48 | 182 |
| MS.gene53003.t1 | AT3G01670 | 22.466 | 730 | 419 | 21 | 36 | 665 | 138 | 820 | 8.68e-36 | 145 |
| MS.gene53003.t1 | AT3G01670 | 22.466 | 730 | 419 | 21 | 36 | 665 | 162 | 844 | 1.16e-35 | 144 |
| MS.gene53003.t1 | AT1G67790 | 20.633 | 664 | 452 | 23 | 35 | 646 | 10 | 650 | 1.90e-18 | 90.1 |
Find 130 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCTTGTCACATTCTTAT+TGG | 0.136620 | 1.1:+56247485 | MS.gene53003:CDS |
| CAATTGCTCTTGTGAATTCT+TGG | 0.155564 | 1.1:-56250775 | None:intergenic |
| CTTGGGAGGTACCATTCTTT+TGG | 0.182584 | 1.1:-56246667 | None:intergenic |
| ATCAATATCGTCAAGCTTAA+AGG | 0.190937 | 1.1:-56246714 | None:intergenic |
| CAACAAAGATTCCATACTTT+TGG | 0.213846 | 1.1:+56250873 | MS.gene53003:CDS |
| AATCAAATGCAGCAACTATT+TGG | 0.224197 | 1.1:-56251295 | None:intergenic |
| GGATTCCCATTGTGGATAAT+TGG | 0.226633 | 1.1:+56249117 | MS.gene53003:CDS |
| GTGCAATTACGTATCTTAAT+AGG | 0.248309 | 1.1:+56247382 | MS.gene53003:CDS |
| TCAAGAAATGGGAATGGTTT+TGG | 0.249117 | 1.1:+56249660 | MS.gene53003:CDS |
| GAAAGTTGCAAAGTGGAAAT+TGG | 0.271554 | 1.1:+56247835 | MS.gene53003:CDS |
| TCTGCCTCAACTCAGATTTC+TGG | 0.271962 | 1.1:+56246824 | MS.gene53003:CDS |
| AACTCTAGCTGCATTCTCTT+TGG | 0.285355 | 1.1:+56247353 | MS.gene53003:CDS |
| CAAATACCACCAATATTTAT+AGG | 0.291356 | 1.1:+56248063 | MS.gene53003:CDS |
| GCTGCATTCTCTTTGGAGTA+TGG | 0.291746 | 1.1:+56247360 | MS.gene53003:CDS |
| GCCACTGATTGGTACATCTT+TGG | 0.299017 | 1.1:-56246636 | None:intergenic |
| TCAGCATCACTTATCCTAAA+AGG | 0.301931 | 1.1:-56249629 | None:intergenic |
| TGAATTCTTGGACCCACTTT+GGG | 0.322793 | 1.1:-56250763 | None:intergenic |
| TCTATACCCATCCAAAAGTA+TGG | 0.327507 | 1.1:-56250884 | None:intergenic |
| GGAGCTGAGATTTCTGTTCT+TGG | 0.330206 | 1.1:-56246685 | None:intergenic |
| CTGAAGATATCTTCAAGAAA+TGG | 0.331332 | 1.1:+56249648 | MS.gene53003:CDS |
| AAACCACAAGAAGTGATAAA+AGG | 0.343304 | 1.1:+56249065 | MS.gene53003:CDS |
| TCGTCAAGCTTAAAGGGATT+AGG | 0.343557 | 1.1:-56246707 | None:intergenic |
| TAACGAGTTGAGGCCTCATT+TGG | 0.343868 | 1.1:+56247813 | MS.gene53003:CDS |
| GGGTTGATCACTGCGAAAAT+AGG | 0.358665 | 1.1:-56249542 | None:intergenic |
| CAAAAGTATGGAATCTTTGT+TGG | 0.360918 | 1.1:-56250872 | None:intergenic |
| CCTGAAGAGGATTTCTTGTC+AGG | 0.368222 | 1.1:+56247014 | MS.gene53003:CDS |
| CAAGGAAAATTATCTTTCAA+TGG | 0.370179 | 1.1:+56249591 | MS.gene53003:CDS |
| GAGCTGAGATTTCTGTTCTT+GGG | 0.379012 | 1.1:-56246684 | None:intergenic |
| CGTCAAGCTTAAAGGGATTA+GGG | 0.380837 | 1.1:-56246706 | None:intergenic |
| GGATTCCTCTTGTTGTGTAT+TGG | 0.381172 | 1.1:+56247598 | MS.gene53003:CDS |
| CAAGAATTCACAAGAGCAAT+TGG | 0.389274 | 1.1:+56250776 | MS.gene53003:CDS |
| AAGGAAAATTATCTTTCAAT+GGG | 0.392951 | 1.1:+56249592 | MS.gene53003:CDS |
| GTGAATTCTTGGACCCACTT+TGG | 0.399763 | 1.1:-56250764 | None:intergenic |
| TGGGCAGCATGGTCTGCTTT+CGG | 0.406610 | 1.1:+56247531 | MS.gene53003:CDS |
| ACACGTCCACAAGTAGGATT+TGG | 0.408497 | 1.1:-56251226 | None:intergenic |
| ATCACCTCAGAGACTTCTCC+TGG | 0.410904 | 1.1:+56247313 | MS.gene53003:CDS |
| GATAGATACATATTCATCTA+TGG | 0.412586 | 1.1:+56250731 | MS.gene53003:CDS |
| AGGCAACAACCAAGTTAAAC+AGG | 0.412902 | 1.1:+56248083 | MS.gene53003:CDS |
| CTATGATTCAGGGCATGAAA+TGG | 0.422094 | 1.1:+56250708 | MS.gene53003:intron |
| TGGTTGTTGCCTATAAATAT+TGG | 0.423025 | 1.1:-56248072 | None:intergenic |
| CAGCACTAACCTGTTTAACT+TGG | 0.423065 | 1.1:-56248092 | None:intergenic |
| CCTGACAAGAAATCCTCTTC+AGG | 0.423986 | 1.1:-56247014 | None:intergenic |
| AAAAGTATGGAATCTTTGTT+GGG | 0.425612 | 1.1:-56250871 | None:intergenic |
| GTCTGCTTTCGGTTATGACT+TGG | 0.426387 | 1.1:+56247542 | MS.gene53003:CDS |
| GCTACCATTGTTGCCTGTAC+TGG | 0.428950 | 1.1:+56247627 | MS.gene53003:CDS |
| GGGTGATATAAACTTTGTTA+AGG | 0.430161 | 1.1:-56246739 | None:intergenic |
| TCAATATCGTCAAGCTTAAA+GGG | 0.433331 | 1.1:-56246713 | None:intergenic |
| TTTAAATAAAAGGTATGTGT+TGG | 0.439529 | 1.1:+56249451 | MS.gene53003:intron |
| GATAAAAGGTTTCAAGAAAG+AGG | 0.440536 | 1.1:+56249079 | MS.gene53003:CDS |
| TGAAGATATCTTCAAGAAAT+GGG | 0.441441 | 1.1:+56249649 | MS.gene53003:CDS |
| TGGGTCGTAGTGCCACTGAT+TGG | 0.444785 | 1.1:-56246647 | None:intergenic |
| TGTTGGAGACAAGCTTGAAA+AGG | 0.463060 | 1.1:-56246796 | None:intergenic |
| CTCTTCAGGACAGAGAAGTC+TGG | 0.466217 | 1.1:-56247000 | None:intergenic |
| CACCCATGTCAAAGATTATG+AGG | 0.466569 | 1.1:+56246757 | MS.gene53003:CDS |
| GATTCCCATTGTGGATAATT+GGG | 0.467568 | 1.1:+56249118 | MS.gene53003:CDS |
| GCCTGTACTGGTAACCTTGT+CGG | 0.472360 | 1.1:+56247639 | MS.gene53003:CDS |
| TTCTCTGAGCTACCAGGGCG+TGG | 0.475211 | 1.1:+56249479 | MS.gene53003:CDS |
| ATTTCGAGATTAGACAGCAT+TGG | 0.478991 | 1.1:+56248996 | MS.gene53003:CDS |
| TCAGCCACAGTTTGATACAT+AGG | 0.485178 | 1.1:-56251058 | None:intergenic |
| CATTCATTATAACACCTTGA+GGG | 0.485580 | 1.1:-56249562 | None:intergenic |
| ATTTGAAAGAAAGCATGAAA+TGG | 0.489829 | 1.1:+56249168 | MS.gene53003:CDS |
| TTCTTGAGACTTCTGATCAA+AGG | 0.489932 | 1.1:+56248027 | MS.gene53003:CDS |
| TATGATTCAGGGCATGAAAT+GGG | 0.490425 | 1.1:+56250709 | MS.gene53003:intron |
| TGCACATTCTGCTGTGCCGC+GGG | 0.492853 | 1.1:-56247265 | None:intergenic |
| GAACCTTTCTGAATTGAACT+TGG | 0.497414 | 1.1:-56247449 | None:intergenic |
| ACTTTGCAACTTTCCAAATG+AGG | 0.497491 | 1.1:-56247826 | None:intergenic |
| TCATCCCAATTATCCACAAT+GGG | 0.497534 | 1.1:-56249122 | None:intergenic |
| ACCGACAAGGTTACCAGTAC+AGG | 0.500684 | 1.1:-56247640 | None:intergenic |
| GGAATCCATTGCATAGCATC+AGG | 0.501216 | 1.1:-56247582 | None:intergenic |
| GTTGGAGACAAGCTTGAAAA+GGG | 0.511266 | 1.1:-56246795 | None:intergenic |
| AGGAGAAGTCTCTGAGGTGA+TGG | 0.514175 | 1.1:-56247311 | None:intergenic |
| TGTCTCAAACAAGACCCATC+AGG | 0.516882 | 1.1:+56250983 | MS.gene53003:CDS |
| TAGCCAAGTTCAATTCAGAA+AGG | 0.519066 | 1.1:+56247446 | MS.gene53003:CDS |
| GGAGAATCCACATTGTTGTC+TGG | 0.519858 | 1.1:-56247290 | None:intergenic |
| TTCTTTATTATCCCACGCCC+TGG | 0.524143 | 1.1:-56249491 | None:intergenic |
| GAACACTTCTCTGAGCTACC+AGG | 0.528519 | 1.1:+56249473 | MS.gene53003:CDS |
| GAAAGTAGATATCAATATTG+AGG | 0.532242 | 1.1:+56249694 | MS.gene53003:CDS |
| AGTTGAGGCAGAGAGGATGT+TGG | 0.533320 | 1.1:-56246813 | None:intergenic |
| ACAAGATCAGTTATATCAGC+AGG | 0.534782 | 1.1:-56247471 | None:intergenic |
| TCCTACTTGTGGACGTGTGA+TGG | 0.538034 | 1.1:+56251231 | MS.gene53003:CDS |
| CTTAGAAGAGCCCATCCTGA+TGG | 0.538249 | 1.1:-56250998 | None:intergenic |
| CTGAGATTTCTGTTCTTGGG+AGG | 0.538881 | 1.1:-56246681 | None:intergenic |
| GGCACTACGACCCAAAAGAA+TGG | 0.546699 | 1.1:+56246656 | MS.gene53003:CDS |
| CAGACTTCTCTGTCCTGAAG+AGG | 0.553925 | 1.1:+56247001 | MS.gene53003:CDS |
| AGACTTCTGATCAAAGGCAA+TGG | 0.558021 | 1.1:+56248033 | MS.gene53003:CDS |
| TTCCTCATAATCTTTGACAT+GGG | 0.560884 | 1.1:-56246759 | None:intergenic |
| GACATTGATTACCACCAACT+AGG | 0.560987 | 1.1:+56250839 | MS.gene53003:CDS |
| ATTCCTCATAATCTTTGACA+TGG | 0.565424 | 1.1:-56246760 | None:intergenic |
| TTAGAAGAGCCCATCCTGAT+GGG | 0.565802 | 1.1:-56250997 | None:intergenic |
| TTCATCCCAATTATCCACAA+TGG | 0.566307 | 1.1:-56249123 | None:intergenic |
| TCATTCATTATAACACCTTG+AGG | 0.567246 | 1.1:-56249563 | None:intergenic |
| TTATAATGAATGAGAATGCA+AGG | 0.574786 | 1.1:+56249573 | MS.gene53003:CDS |
| TTGTTGCCTATAAATATTGG+TGG | 0.577295 | 1.1:-56248069 | None:intergenic |
| GTGCACATTCTGCTGTGCCG+CGG | 0.581489 | 1.1:-56247266 | None:intergenic |
| CTTTGCCTGATGCTATGCAA+TGG | 0.584464 | 1.1:+56247577 | MS.gene53003:CDS |
| ACTGTCCAATACACAACAAG+AGG | 0.585978 | 1.1:-56247603 | None:intergenic |
| TCAAACAAGACCCATCAGGA+TGG | 0.586004 | 1.1:+56250987 | MS.gene53003:CDS |
| ATGTGGTGGTTAACGAGTTG+AGG | 0.588601 | 1.1:+56247803 | MS.gene53003:CDS |
| GGATGGGCTCTTCTAAGTAG+AGG | 0.593803 | 1.1:+56251004 | MS.gene53003:CDS |
| CAAACAAGACCCATCAGGAT+GGG | 0.596159 | 1.1:+56250988 | MS.gene53003:CDS |
| ATATCTTCAAGAAATGGGAA+TGG | 0.602647 | 1.1:+56249654 | MS.gene53003:CDS |
| ACTTGTCCAAATCCTACTTG+TGG | 0.603163 | 1.1:+56251220 | MS.gene53003:CDS |
| ATGGAGGCAACGACCCAAAG+TGG | 0.604064 | 1.1:+56250750 | MS.gene53003:CDS |
| AGTTCCAGAAATCTGAGTTG+AGG | 0.604866 | 1.1:-56246828 | None:intergenic |
| TACATCTTTGGACAATGCAG+TGG | 0.608358 | 1.1:-56246624 | None:intergenic |
| ACATTAAACAGTGGGCAGCA+TGG | 0.610506 | 1.1:+56247520 | MS.gene53003:CDS |
| ATTCAATCATCAGACACACT+TGG | 0.616321 | 1.1:+56247405 | MS.gene53003:CDS |
| TTTGGACAATGCAGTGGACA+TGG | 0.617395 | 1.1:-56246618 | None:intergenic |
| TCATTTGGAAAGTTGCAAAG+TGG | 0.618816 | 1.1:+56247828 | MS.gene53003:CDS |
| GTTACCAGTACAGGCAACAA+TGG | 0.619153 | 1.1:-56247631 | None:intergenic |
| TCTCTGAGCTACCAGGGCGT+GGG | 0.623157 | 1.1:+56249480 | MS.gene53003:CDS |
| AAATCTGAGTTGAGGCAGAG+AGG | 0.625519 | 1.1:-56246820 | None:intergenic |
| GTTACAAGACATTAAACAGT+GGG | 0.627387 | 1.1:+56247512 | MS.gene53003:CDS |
| GATGGGCTCTTCTAAGTAGA+GGG | 0.629283 | 1.1:+56251005 | MS.gene53003:CDS |
| TGGAGGCAACGACCCAAAGT+GGG | 0.636550 | 1.1:+56250751 | MS.gene53003:CDS |
| TCACCTCAGAGACTTCTCCT+GGG | 0.638066 | 1.1:+56247314 | MS.gene53003:CDS |
| TTCGCAGTGATCAACCCTCA+AGG | 0.640109 | 1.1:+56249548 | MS.gene53003:CDS |
| TCCAAAGATGTACCAATCAG+TGG | 0.640910 | 1.1:+56246635 | MS.gene53003:CDS |
| AGATACATATTCATCTATGG+AGG | 0.642307 | 1.1:+56250734 | MS.gene53003:CDS |
| AGGAAAATTATCTTTCAATG+GGG | 0.652359 | 1.1:+56249593 | MS.gene53003:CDS |
| TCCATCACACGTCCACAAGT+AGG | 0.659029 | 1.1:-56251232 | None:intergenic |
| CTTCCCAGGAGAAGTCTCTG+AGG | 0.675866 | 1.1:-56247317 | None:intergenic |
| AACTATTTGGATCATCACGA+TGG | 0.682485 | 1.1:-56251282 | None:intergenic |
| TACTTGTGGACGTGTGATGG+AGG | 0.687419 | 1.1:+56251234 | MS.gene53003:CDS |
| AACACTTCTCTGAGCTACCA+GGG | 0.697242 | 1.1:+56249474 | MS.gene53003:CDS |
| TGTTACAAGACATTAAACAG+TGG | 0.717621 | 1.1:+56247511 | MS.gene53003:CDS |
| TGACAGATGATAACGACCCG+CGG | 0.734185 | 1.1:+56247249 | MS.gene53003:intron |
| TGAACCTATGTATCAAACTG+TGG | 0.735680 | 1.1:+56251054 | MS.gene53003:CDS |
| GTGCACACCAGACAACAATG+TGG | 0.739193 | 1.1:+56247283 | MS.gene53003:CDS |
| GAACTTACGATATACCGACA+AGG | 0.746980 | 1.1:-56247653 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTACATATATTAATAAA+GGG | - | chr1.1:56248846-56248865 | None:intergenic | 10.0% |
| !! | TATTATCAGATTATAAAAAA+AGG | + | chr1.1:56247773-56247792 | MS.gene53003:CDS | 10.0% |
| !! | AAAAAACTGAATTATGATAT+TGG | + | chr1.1:56249512-56249531 | MS.gene53003:CDS | 15.0% |
| !! | AGTAAAAATAACATAGTAAA+AGG | - | chr1.1:56248912-56248931 | None:intergenic | 15.0% |
| !! | AGTATATGAAGAAAAAAATT+GGG | - | chr1.1:56248701-56248720 | None:intergenic | 15.0% |
| !! | ATAAAAAAAAAAAACTCCAT+CGG | + | chr1.1:56247092-56247111 | MS.gene53003:intron | 15.0% |
| !! | GAAACTACATATATTAATAA+AGG | - | chr1.1:56248847-56248866 | None:intergenic | 15.0% |
| !! | GTAAAAATAACATAGTAAAA+GGG | - | chr1.1:56248911-56248930 | None:intergenic | 15.0% |
| !! | TAGTATATGAAGAAAAAAAT+TGG | - | chr1.1:56248702-56248721 | None:intergenic | 15.0% |
| !! | TATTAAAATGTATAAGTGAA+AGG | - | chr1.1:56246881-56246900 | None:intergenic | 15.0% |
| !! | TTAGATTAACAAGAAATTTA+TGG | - | chr1.1:56249838-56249857 | None:intergenic | 15.0% |
| !! | TTTATTATAGCTTTCATAAT+TGG | - | chr1.1:56250115-56250134 | None:intergenic | 15.0% |
| !!! | TTTTATTAATCTGTATGAAA+TGG | + | chr1.1:56247167-56247186 | MS.gene53003:intron | 15.0% |
| !! | AACTTTAGATTTATGAAGTA+CGG | + | chr1.1:56249219-56249238 | MS.gene53003:intron | 20.0% |
| !! | AAGGAAAATTATCTTTCAAT+GGG | + | chr1.1:56249592-56249611 | MS.gene53003:CDS | 20.0% |
| !! | AATCTGAGTACAATTATATT+GGG | - | chr1.1:56248302-56248321 | None:intergenic | 20.0% |
| !! | AGTAAATTTCATTAACATGT+CGG | - | chr1.1:56248455-56248474 | None:intergenic | 20.0% |
| !! | CACATGAAAATTAATCTTAA+TGG | - | chr1.1:56248401-56248420 | None:intergenic | 20.0% |
| !! | GAAAATCATATCATTCAAAA+TGG | - | chr1.1:56248536-56248555 | None:intergenic | 20.0% |
| !! | GATATATTAACACTAAACAA+CGG | + | chr1.1:56249975-56249994 | MS.gene53003:intron | 20.0% |
| !! | TAATTGTTCTTTATGATTGA+AGG | - | chr1.1:56250555-56250574 | None:intergenic | 20.0% |
| !! | TACATAAATAACTACATATG+TGG | + | chr1.1:56247858-56247877 | MS.gene53003:intron | 20.0% |
| !! | TATATACATGTAAGTGTAAA+TGG | + | chr1.1:56247725-56247744 | MS.gene53003:intron | 20.0% |
| !! | TATTCTTACTTGGTATAAAA+AGG | + | chr1.1:56248774-56248793 | MS.gene53003:intron | 20.0% |
| !! | TCTTGTAAATGAATAAAACA+TGG | + | chr1.1:56248347-56248366 | MS.gene53003:intron | 20.0% |
| !! | TTTAGTGTAAATATATGTGT+CGG | + | chr1.1:56249310-56249329 | MS.gene53003:intron | 20.0% |
| !!! | ATATTGTTTCCAATTTTTGT+AGG | + | chr1.1:56247943-56247962 | MS.gene53003:intron | 20.0% |
| !!! | GTTGACATTCTTTTTATTTT+AGG | - | chr1.1:56248259-56248278 | None:intergenic | 20.0% |
| !!! | TAAATAATTTCCATGCATTT+TGG | + | chr1.1:56249404-56249423 | MS.gene53003:intron | 20.0% |
| !!! | TATTGTTTCCAATTTTTGTA+GGG | + | chr1.1:56247944-56247963 | MS.gene53003:intron | 20.0% |
| !!! | TTTAAATAAAAGGTATGTGT+TGG | + | chr1.1:56249451-56249470 | MS.gene53003:intron | 20.0% |
| !!! | TTTTTGTCTTGTCATTTTTT+TGG | - | chr1.1:56250398-56250417 | None:intergenic | 20.0% |
| ! | AAAATAACATAGTAAAAGGG+CGG | - | chr1.1:56248908-56248927 | None:intergenic | 25.0% |
| ! | AAATGATCCACAATATTAGA+TGG | + | chr1.1:56250331-56250350 | MS.gene53003:intron | 25.0% |
| ! | AAATTATCCTTATTAACCGA+TGG | - | chr1.1:56247111-56247130 | None:intergenic | 25.0% |
| ! | ACATCAAACCATAAAAAATG+TGG | + | chr1.1:56250811-56250830 | MS.gene53003:CDS | 25.0% |
| ! | AGGAAAATTATCTTTCAATG+GGG | + | chr1.1:56249593-56249612 | MS.gene53003:CDS | 25.0% |
| ! | ATGTATATACGATATAGTGA+CGG | - | chr1.1:56247714-56247733 | None:intergenic | 25.0% |
| ! | CAAATACCACCAATATTTAT+AGG | + | chr1.1:56248063-56248082 | MS.gene53003:CDS | 25.0% |
| ! | CAAGGAAAATTATCTTTCAA+TGG | + | chr1.1:56249591-56249610 | MS.gene53003:CDS | 25.0% |
| ! | GAAAGTAGATATCAATATTG+AGG | + | chr1.1:56249694-56249713 | MS.gene53003:CDS | 25.0% |
| ! | GAATCTGAGTACAATTATAT+TGG | - | chr1.1:56248303-56248322 | None:intergenic | 25.0% |
| ! | GATAGATACATATTCATCTA+TGG | + | chr1.1:56250731-56250750 | MS.gene53003:CDS | 25.0% |
| ! | GTAAATTTCATTAACATGTC+GGG | - | chr1.1:56248454-56248473 | None:intergenic | 25.0% |
| ! | TAAATTTCATTAACATGTCG+GGG | - | chr1.1:56248453-56248472 | None:intergenic | 25.0% |
| ! | TACTAAATGATTACTATGCA+GGG | + | chr1.1:56248626-56248645 | MS.gene53003:intron | 25.0% |
| ! | TATCAAATTATTAACGGTGT+CGG | - | chr1.1:56249279-56249298 | None:intergenic | 25.0% |
| ! | TGAAAAGTGGAAAAATAATG+TGG | + | chr1.1:56251084-56251103 | MS.gene53003:CDS | 25.0% |
| ! | TGAAGATATCTTCAAGAAAT+GGG | + | chr1.1:56249649-56249668 | MS.gene53003:CDS | 25.0% |
| ! | TGGGATCACTATAAAAAAAA+TGG | - | chr1.1:56248283-56248302 | None:intergenic | 25.0% |
| ! | TGTATATTCCCTACAAAAAT+TGG | - | chr1.1:56247955-56247974 | None:intergenic | 25.0% |
| ! | TTAAAAATGTGTCTGTAGTT+TGG | - | chr1.1:56249725-56249744 | None:intergenic | 25.0% |
| ! | TTACTAAATGATTACTATGC+AGG | + | chr1.1:56248625-56248644 | MS.gene53003:intron | 25.0% |
| ! | TTATAATGAATGAGAATGCA+AGG | + | chr1.1:56249573-56249592 | MS.gene53003:CDS | 25.0% |
| ! | TTGTTTCATGTATTCTTACT+TGG | + | chr1.1:56248764-56248783 | MS.gene53003:intron | 25.0% |
| !! | AAAAGTATGGAATCTTTGTT+GGG | - | chr1.1:56250874-56250893 | None:intergenic | 25.0% |
| !! | ATGTATTCATGTGTTTTACA+AGG | - | chr1.1:56248602-56248621 | None:intergenic | 25.0% |
| !! | ATTTGAAAGAAAGCATGAAA+TGG | + | chr1.1:56249168-56249187 | MS.gene53003:CDS | 25.0% |
| !!! | AATGGTTCTTTTTTTCTTGT+AGG | + | chr1.1:56247743-56247762 | MS.gene53003:intron | 25.0% |
| !!! | ATGGTTCTTTTTTTCTTGTA+GGG | + | chr1.1:56247744-56247763 | MS.gene53003:intron | 25.0% |
| AAACCACAAGAAGTGATAAA+AGG | + | chr1.1:56249065-56249084 | MS.gene53003:CDS | 30.0% | |
| AATTGGGTAATAATCTAGTG+TGG | - | chr1.1:56248685-56248704 | None:intergenic | 30.0% | |
| ACGAAACAAATTTGTCTTAG+AGG | + | chr1.1:56250490-56250509 | MS.gene53003:intron | 30.0% | |
| ACTAAATGATTACTATGCAG+GGG | + | chr1.1:56248627-56248646 | MS.gene53003:intron | 30.0% | |
| AGATACATATTCATCTATGG+AGG | + | chr1.1:56250734-56250753 | MS.gene53003:CDS | 30.0% | |
| AGCATATCTAAAAAGCTATG+AGG | - | chr1.1:56249384-56249403 | None:intergenic | 30.0% | |
| ATATCTTCAAGAAATGGGAA+TGG | + | chr1.1:56249654-56249673 | MS.gene53003:CDS | 30.0% | |
| ATCAATATCGTCAAGCTTAA+AGG | - | chr1.1:56246717-56246736 | None:intergenic | 30.0% | |
| ATGATGTTACCTATGATTCA+GGG | + | chr1.1:56250698-56250717 | MS.gene53003:intron | 30.0% | |
| ATTCCTCATAATCTTTGACA+TGG | - | chr1.1:56246763-56246782 | None:intergenic | 30.0% | |
| ATTGTTAGTACCAAAATGCA+TGG | - | chr1.1:56249417-56249436 | None:intergenic | 30.0% | |
| CAAAATGGAAAACAGAAATC+TGG | - | chr1.1:56248521-56248540 | None:intergenic | 30.0% | |
| CAATAATAGTTAAGACACTC+AGG | - | chr1.1:56248119-56248138 | None:intergenic | 30.0% | |
| CATTCATTATAACACCTTGA+GGG | - | chr1.1:56249565-56249584 | None:intergenic | 30.0% | |
| CGAAACAAATTTGTCTTAGA+GGG | + | chr1.1:56250491-56250510 | MS.gene53003:intron | 30.0% | |
| CTGAAGATATCTTCAAGAAA+TGG | + | chr1.1:56249648-56249667 | MS.gene53003:CDS | 30.0% | |
| GATAAAAGGTTTCAAGAAAG+AGG | + | chr1.1:56249079-56249098 | MS.gene53003:CDS | 30.0% | |
| GGGTGATATAAACTTTGTTA+AGG | - | chr1.1:56246742-56246761 | None:intergenic | 30.0% | |
| GTACTCAGATTCTTTAAGTA+AGG | + | chr1.1:56248311-56248330 | MS.gene53003:intron | 30.0% | |
| GTGCAATTACGTATCTTAAT+AGG | + | chr1.1:56247382-56247401 | MS.gene53003:CDS | 30.0% | |
| GTGGATCATTTCTATCTATT+TGG | - | chr1.1:56250322-56250341 | None:intergenic | 30.0% | |
| GTTACAAGACATTAAACAGT+GGG | + | chr1.1:56247512-56247531 | MS.gene53003:CDS | 30.0% | |
| GTTTACTCCATCTAATATTG+TGG | - | chr1.1:56250341-56250360 | None:intergenic | 30.0% | |
| TATCTATTTGGTACTTCTTC+CGG | - | chr1.1:56250310-56250329 | None:intergenic | 30.0% | |
| TATGATGTTACCTATGATTC+AGG | + | chr1.1:56250697-56250716 | MS.gene53003:intron | 30.0% | |
| TCAATATCGTCAAGCTTAAA+GGG | - | chr1.1:56246716-56246735 | None:intergenic | 30.0% | |
| TCATTCATTATAACACCTTG+AGG | - | chr1.1:56249566-56249585 | None:intergenic | 30.0% | |
| TGATCTTGTCACATTCTTAT+TGG | + | chr1.1:56247485-56247504 | MS.gene53003:CDS | 30.0% | |
| TGGTTGTTGCCTATAAATAT+TGG | - | chr1.1:56248075-56248094 | None:intergenic | 30.0% | |
| TGTTACAAGACATTAAACAG+TGG | + | chr1.1:56247511-56247530 | MS.gene53003:CDS | 30.0% | |
| TTAAAGCACAAGAGCAAAAA+TGG | - | chr1.1:56248811-56248830 | None:intergenic | 30.0% | |
| TTCCTCATAATCTTTGACAT+GGG | - | chr1.1:56246762-56246781 | None:intergenic | 30.0% | |
| TTGTTGCCTATAAATATTGG+TGG | - | chr1.1:56248072-56248091 | None:intergenic | 30.0% | |
| ! | AAAAACTCCATCGGTTAATA+AGG | + | chr1.1:56247101-56247120 | MS.gene53003:intron | 30.0% |
| ! | AAACCTTTTATCACTTCTTG+TGG | - | chr1.1:56249071-56249090 | None:intergenic | 30.0% |
| ! | AAAGATTCCATACTTTTGGA+TGG | + | chr1.1:56250877-56250896 | MS.gene53003:CDS | 30.0% |
| ! | AAGACAAATTTGTTTCGTAG+AGG | - | chr1.1:56250488-56250507 | None:intergenic | 30.0% |
| ! | AAGAGGATTTCAAGATTTTG+TGG | + | chr1.1:56249096-56249115 | MS.gene53003:CDS | 30.0% |
| ! | AAGATTCCATACTTTTGGAT+GGG | + | chr1.1:56250878-56250897 | MS.gene53003:CDS | 30.0% |
| ! | CAAAAGTATGGAATCTTTGT+TGG | - | chr1.1:56250875-56250894 | None:intergenic | 30.0% |
| ! | CAACAAAGATTCCATACTTT+TGG | + | chr1.1:56250873-56250892 | MS.gene53003:CDS | 30.0% |
| !! | TGAACTCTTGTTGTACTTTT+CGG | - | chr1.1:56250038-56250057 | None:intergenic | 30.0% |
| !!! | AATTTTTTTCTTCCCAACAC+AGG | + | chr1.1:56248935-56248954 | MS.gene53003:intron | 30.0% |
| !!! | ATTTTTTTCTTCCCAACACA+GGG | + | chr1.1:56248936-56248955 | MS.gene53003:intron | 30.0% |
| !!! | TTGGGTTTTTTTTTCCTAGT+TGG | - | chr1.1:56250856-56250875 | None:intergenic | 30.0% |
| AACTATTTGGATCATCACGA+TGG | - | chr1.1:56251285-56251304 | None:intergenic | 35.0% | |
| ACAAGATCAGTTATATCAGC+AGG | - | chr1.1:56247474-56247493 | None:intergenic | 35.0% | |
| ACTTTGCAACTTTCCAAATG+AGG | - | chr1.1:56247829-56247848 | None:intergenic | 35.0% | |
| ATGAAGTACGGATAGAAACA+CGG | + | chr1.1:56249231-56249250 | MS.gene53003:intron | 35.0% | |
| ATGTTAAACTTCTCTCCTTC+TGG | - | chr1.1:56250163-56250182 | None:intergenic | 35.0% | |
| ATTCAATCATCAGACACACT+TGG | + | chr1.1:56247405-56247424 | MS.gene53003:CDS | 35.0% | |
| ATTTCGAGATTAGACAGCAT+TGG | + | chr1.1:56248996-56249015 | MS.gene53003:CDS | 35.0% | |
| CAAGAATTCACAAGAGCAAT+TGG | + | chr1.1:56250776-56250795 | MS.gene53003:CDS | 35.0% | |
| CAATTGCTCTTGTGAATTCT+TGG | - | chr1.1:56250778-56250797 | None:intergenic | 35.0% | |
| GAAAGTTGCAAAGTGGAAAT+TGG | + | chr1.1:56247835-56247854 | MS.gene53003:CDS | 35.0% | |
| GAACCTTTCTGAATTGAACT+TGG | - | chr1.1:56247452-56247471 | None:intergenic | 35.0% | |
| GAATAAAACATGGTTGTGAG+TGG | + | chr1.1:56248357-56248376 | MS.gene53003:intron | 35.0% | |
| GATAGACGAAAGAATCAAGA+TGG | - | chr1.1:56247144-56247163 | None:intergenic | 35.0% | |
| GATTCCCATTGTGGATAATT+GGG | + | chr1.1:56249118-56249137 | MS.gene53003:CDS | 35.0% | |
| TAAAAAAAGGCTGTCTCATG+TGG | + | chr1.1:56247786-56247805 | MS.gene53003:CDS | 35.0% | |
| TAGCCAAGTTCAATTCAGAA+AGG | + | chr1.1:56247446-56247465 | MS.gene53003:CDS | 35.0% | |
| TATGATTCAGGGCATGAAAT+GGG | + | chr1.1:56250709-56250728 | MS.gene53003:intron | 35.0% | |
| TATGGAAGGAAAGAAATGAC+AGG | - | chr1.1:56250229-56250248 | None:intergenic | 35.0% | |
| TATGGTAGTTGGTTAGGAAT+TGG | - | chr1.1:56250370-56250389 | None:intergenic | 35.0% | |
| TCAGCATCACTTATCCTAAA+AGG | - | chr1.1:56249632-56249651 | None:intergenic | 35.0% | |
| TCATCCCAATTATCCACAAT+GGG | - | chr1.1:56249125-56249144 | None:intergenic | 35.0% | |
| TCATTTGGAAAGTTGCAAAG+TGG | + | chr1.1:56247828-56247847 | MS.gene53003:CDS | 35.0% | |
| TCTATACCCATCCAAAAGTA+TGG | - | chr1.1:56250887-56250906 | None:intergenic | 35.0% | |
| TGAACCTATGTATCAAACTG+TGG | + | chr1.1:56251054-56251073 | MS.gene53003:CDS | 35.0% | |
| TTCATCCCAATTATCCACAA+TGG | - | chr1.1:56249126-56249145 | None:intergenic | 35.0% | |
| TTCTTGAGACTTCTGATCAA+AGG | + | chr1.1:56248027-56248046 | MS.gene53003:CDS | 35.0% | |
| TTTAGTCACACCAATATCGA+TGG | + | chr1.1:56248875-56248894 | MS.gene53003:intron | 35.0% | |
| TTTGCTTGTTCGTAGTGTTA+TGG | - | chr1.1:56250247-56250266 | None:intergenic | 35.0% | |
| ! | GAATCGATGCTTTTCCTTTT+AGG | + | chr1.1:56249615-56249634 | MS.gene53003:CDS | 35.0% |
| ! | GTCAGGTTAGTTGTTAATGT+CGG | + | chr1.1:56247031-56247050 | MS.gene53003:intron | 35.0% |
| ! | TACTTTTCGGTTGTCTTAGA+TGG | - | chr1.1:56250025-56250044 | None:intergenic | 35.0% |
| ! | TACTTTTGGATGGGTATAGA+TGG | + | chr1.1:56250887-56250906 | MS.gene53003:CDS | 35.0% |
| ! | TCAAGAAATGGGAATGGTTT+TGG | + | chr1.1:56249660-56249679 | MS.gene53003:CDS | 35.0% |
| ! | TCATTGGATTAGACGTGTTT+CGG | - | chr1.1:56249352-56249371 | None:intergenic | 35.0% |
| !! | AAGCTTTGATGAAGCTTTTC+AGG | + | chr1.1:56251117-56251136 | MS.gene53003:CDS | 35.0% |
| !! | CATGTTACACTTTTTGGTCA+TGG | + | chr1.1:56251031-56251050 | MS.gene53003:CDS | 35.0% |
| !! | TAAACAACGGACTATCTAGT+CGG | + | chr1.1:56249988-56250007 | MS.gene53003:intron | 35.0% |
| !! | TAGAGGCATTATTACTTCTG+AGG | - | chr1.1:56250471-56250490 | None:intergenic | 35.0% |
| !!! | GGTTTTTTTTTCCTAGTTGG+TGG | - | chr1.1:56250853-56250872 | None:intergenic | 35.0% |
| !!! | GTCAACGTCCACATTTTTTA+TGG | - | chr1.1:56250822-56250841 | None:intergenic | 35.0% |
| !!! | GTCATTTTTTTGGCCAGTTA+TGG | - | chr1.1:56250388-56250407 | None:intergenic | 35.0% |
| AAAAAGACCCCAAGCAAACA+CGG | + | chr1.1:56250526-56250545 | MS.gene53003:intron | 40.0% | |
| AAAACCCCATTCTTATGTGC+GGG | - | chr1.1:56250088-56250107 | None:intergenic | 40.0% | |
| AAATTCTCCGACTCAGATAC+TGG | - | chr1.1:56250189-56250208 | None:intergenic | 40.0% | |
| AACTCTAGCTGCATTCTCTT+TGG | + | chr1.1:56247353-56247372 | MS.gene53003:CDS | 40.0% | |
| AAGACTTCAATACCCTGTGT+TGG | - | chr1.1:56248951-56248970 | None:intergenic | 40.0% | |
| AATACCCGCACATAAGAATG+GGG | + | chr1.1:56250081-56250100 | MS.gene53003:intron | 40.0% | |
| ACATTCTCCAGTATCTGAGT+CGG | + | chr1.1:56250179-56250198 | MS.gene53003:intron | 40.0% | |
| ACTGTCCAATACACAACAAG+AGG | - | chr1.1:56247606-56247625 | None:intergenic | 40.0% | |
| ACTTGTCCAAATCCTACTTG+TGG | + | chr1.1:56251220-56251239 | MS.gene53003:CDS | 40.0% | |
| AGACTTCAATACCCTGTGTT+GGG | - | chr1.1:56248950-56248969 | None:intergenic | 40.0% | |
| AGACTTCTGATCAAAGGCAA+TGG | + | chr1.1:56248033-56248052 | MS.gene53003:CDS | 40.0% | |
| AGGCAACAACCAAGTTAAAC+AGG | + | chr1.1:56248083-56248102 | MS.gene53003:CDS | 40.0% | |
| AGTTCCAGAAATCTGAGTTG+AGG | - | chr1.1:56246831-56246850 | None:intergenic | 40.0% | |
| CAAAACCCCATTCTTATGTG+CGG | - | chr1.1:56250089-56250108 | None:intergenic | 40.0% | |
| CAAGTTAAACAGGTTAGTGC+TGG | + | chr1.1:56248093-56248112 | MS.gene53003:intron | 40.0% | |
| CAATACCCGCACATAAGAAT+GGG | + | chr1.1:56250080-56250099 | MS.gene53003:intron | 40.0% | |
| CACCCATGTCAAAGATTATG+AGG | + | chr1.1:56246757-56246776 | MS.gene53003:CDS | 40.0% | |
| CAGCACTAACCTGTTTAACT+TGG | - | chr1.1:56248095-56248114 | None:intergenic | 40.0% | |
| CATTTCATGCCCTGAATCAT+AGG | - | chr1.1:56250710-56250729 | None:intergenic | 40.0% | |
| CGTCAAGCTTAAAGGGATTA+GGG | - | chr1.1:56246709-56246728 | None:intergenic | 40.0% | |
| CTATGATTCAGGGCATGAAA+TGG | + | chr1.1:56250708-56250727 | MS.gene53003:intron | 40.0% | |
| CTTGTTCGTAGTGTTATGGA+AGG | - | chr1.1:56250243-56250262 | None:intergenic | 40.0% | |
| GAACTTACGATATACCGACA+AGG | - | chr1.1:56247656-56247675 | None:intergenic | 40.0% | |
| GAGCTGAGATTTCTGTTCTT+GGG | - | chr1.1:56246687-56246706 | None:intergenic | 40.0% | |
| GCACAAGAGCAAAAATGGTT+TGG | - | chr1.1:56248806-56248825 | None:intergenic | 40.0% | |
| GGATTCCCATTGTGGATAAT+TGG | + | chr1.1:56249117-56249136 | MS.gene53003:CDS | 40.0% | |
| GTTCGCTTATGCATCAGATT+TGG | - | chr1.1:56250270-56250289 | None:intergenic | 40.0% | |
| GTTGGAGACAAGCTTGAAAA+GGG | - | chr1.1:56246798-56246817 | None:intergenic | 40.0% | |
| TACATCTTTGGACAATGCAG+TGG | - | chr1.1:56246627-56246646 | None:intergenic | 40.0% | |
| TAGTTGGTTAGGAATTGGCT+TGG | - | chr1.1:56250365-56250384 | None:intergenic | 40.0% | |
| TATGAGGCACAAACACTCAT+TGG | - | chr1.1:56249368-56249387 | None:intergenic | 40.0% | |
| TCAGCCACAGTTTGATACAT+AGG | - | chr1.1:56251061-56251080 | None:intergenic | 40.0% | |
| TCCAAAGATGTACCAATCAG+TGG | + | chr1.1:56246635-56246654 | MS.gene53003:CDS | 40.0% | |
| TCCTAACCAACTACCATAAC+TGG | + | chr1.1:56250372-56250391 | MS.gene53003:intron | 40.0% | |
| TCGTCAAGCTTAAAGGGATT+AGG | - | chr1.1:56246710-56246729 | None:intergenic | 40.0% | |
| TGAATTCTTGGACCCACTTT+GGG | - | chr1.1:56250766-56250785 | None:intergenic | 40.0% | |
| TGTTGGAGACAAGCTTGAAA+AGG | - | chr1.1:56246799-56246818 | None:intergenic | 40.0% | |
| TTAAACTTCTCTCCTTCTGG+TGG | - | chr1.1:56250160-56250179 | None:intergenic | 40.0% | |
| ! | ACATCGAGATTTTCCATAGC+CGG | + | chr1.1:56250288-56250307 | MS.gene53003:intron | 40.0% |
| ! | GACATTGATTACCACCAACT+AGG | + | chr1.1:56250839-56250858 | MS.gene53003:CDS | 40.0% |
| ! | GATTTTGTGGATTCCCATTG+TGG | + | chr1.1:56249109-56249128 | MS.gene53003:CDS | 40.0% |
| ! | GGATTCCTCTTGTTGTGTAT+TGG | + | chr1.1:56247598-56247617 | MS.gene53003:CDS | 40.0% |
| ! | GGGCATCATGTTACACTTTT+TGG | + | chr1.1:56251025-56251044 | MS.gene53003:CDS | 40.0% |
| ! | TATCAATGCTTTTGCTTCCC+AGG | - | chr1.1:56247334-56247353 | None:intergenic | 40.0% |
| ! | TGTTTGCTTGGGGTCTTTTT+GGG | - | chr1.1:56250526-56250545 | None:intergenic | 40.0% |
| ! | TTTTGGCCAGTTATGGTAGT+TGG | - | chr1.1:56250381-56250400 | None:intergenic | 40.0% |
| !! | CTGTGGCTGATTTTGAAAAG+TGG | + | chr1.1:56251071-56251090 | MS.gene53003:CDS | 40.0% |
| !! | TGTAGCTTTAAACCACCAGA+AGG | + | chr1.1:56250145-56250164 | MS.gene53003:intron | 40.0% |
| !!! | TTGGGAGGTACCATTCTTTT+GGG | - | chr1.1:56246669-56246688 | None:intergenic | 40.0% |
| AAAAAGGCTGTCTCATGTGG+TGG | + | chr1.1:56247789-56247808 | MS.gene53003:CDS | 45.0% | |
| AACACTTCTCTGAGCTACCA+GGG | + | chr1.1:56249474-56249493 | MS.gene53003:CDS | 45.0% | |
| AAGGTTTCCGTGTTTGCTTG+GGG | - | chr1.1:56250536-56250555 | None:intergenic | 45.0% | |
| ACACGTCCACAAGTAGGATT+TGG | - | chr1.1:56251229-56251248 | None:intergenic | 45.0% | |
| ACATTAAACAGTGGGCAGCA+TGG | + | chr1.1:56247520-56247539 | MS.gene53003:CDS | 45.0% | |
| ATCCAGCATAAGGCATAGTG+TGG | + | chr1.1:56248653-56248672 | MS.gene53003:intron | 45.0% | |
| ATGTGGTGGTTAACGAGTTG+AGG | + | chr1.1:56247803-56247822 | MS.gene53003:CDS | 45.0% | |
| CAAACAAGACCCATCAGGAT+GGG | + | chr1.1:56250988-56251007 | MS.gene53003:CDS | 45.0% | |
| CACACCAATATCGATGGTCT+AGG | + | chr1.1:56248881-56248900 | MS.gene53003:intron | 45.0% | |
| CCAATACCCGCACATAAGAA+TGG | + | chr1.1:56250079-56250098 | MS.gene53003:intron | 45.0% | |
| CCATTCTTATGTGCGGGTAT+TGG | - | chr1.1:56250082-56250101 | None:intergenic | 45.0% | |
| CCTGAAGAGGATTTCTTGTC+AGG | + | chr1.1:56247014-56247033 | MS.gene53003:CDS | 45.0% | |
| CCTGACAAGAAATCCTCTTC+AGG | - | chr1.1:56247017-56247036 | None:intergenic | 45.0% | |
| CTGAGATTTCTGTTCTTGGG+AGG | - | chr1.1:56246684-56246703 | None:intergenic | 45.0% | |
| CTTTGCCTGATGCTATGCAA+TGG | + | chr1.1:56247577-56247596 | MS.gene53003:CDS | 45.0% | |
| GAAGGTTTCCGTGTTTGCTT+GGG | - | chr1.1:56250537-56250556 | None:intergenic | 45.0% | |
| GCCAGTTATGGTAGTTGGTT+AGG | - | chr1.1:56250376-56250395 | None:intergenic | 45.0% | |
| GGAATCCATTGCATAGCATC+AGG | - | chr1.1:56247585-56247604 | None:intergenic | 45.0% | |
| GGAGAATCCACATTGTTGTC+TGG | - | chr1.1:56247293-56247312 | None:intergenic | 45.0% | |
| GGAGCTGAGATTTCTGTTCT+TGG | - | chr1.1:56246688-56246707 | None:intergenic | 45.0% | |
| GTCTGCTTTCGGTTATGACT+TGG | + | chr1.1:56247542-56247561 | MS.gene53003:CDS | 45.0% | |
| GTGAATTCTTGGACCCACTT+TGG | - | chr1.1:56250767-56250786 | None:intergenic | 45.0% | |
| GTTACCAGTACAGGCAACAA+TGG | - | chr1.1:56247634-56247653 | None:intergenic | 45.0% | |
| TCAAACAAGACCCATCAGGA+TGG | + | chr1.1:56250987-56251006 | MS.gene53003:CDS | 45.0% | |
| TCTGCCTCAACTCAGATTTC+TGG | + | chr1.1:56246824-56246843 | MS.gene53003:CDS | 45.0% | |
| TGAAGGTTTCCGTGTTTGCT+TGG | - | chr1.1:56250538-56250557 | None:intergenic | 45.0% | |
| TGTCTCAAACAAGACCCATC+AGG | + | chr1.1:56250983-56251002 | MS.gene53003:CDS | 45.0% | |
| TTAGAAGAGCCCATCCTGAT+GGG | - | chr1.1:56251000-56251019 | None:intergenic | 45.0% | |
| TTCTTTATTATCCCACGCCC+TGG | - | chr1.1:56249494-56249513 | None:intergenic | 45.0% | |
| TTTGGTACTTCTTCCGGCTA+TGG | - | chr1.1:56250304-56250323 | None:intergenic | 45.0% | |
| ! | AAATCTGAGTTGAGGCAGAG+AGG | - | chr1.1:56246823-56246842 | None:intergenic | 45.0% |
| ! | GATGGGCTCTTCTAAGTAGA+GGG | + | chr1.1:56251005-56251024 | MS.gene53003:CDS | 45.0% |
| ! | GCCACTGATTGGTACATCTT+TGG | - | chr1.1:56246639-56246658 | None:intergenic | 45.0% |
| ! | GGGTTGATCACTGCGAAAAT+AGG | - | chr1.1:56249545-56249564 | None:intergenic | 45.0% |
| ! | GTGTTTGCTTGGGGTCTTTT+TGG | - | chr1.1:56250527-56250546 | None:intergenic | 45.0% |
| ! | TAACGAGTTGAGGCCTCATT+TGG | + | chr1.1:56247813-56247832 | MS.gene53003:CDS | 45.0% |
| !! | GCTGCATTCTCTTTGGAGTA+TGG | + | chr1.1:56247360-56247379 | MS.gene53003:CDS | 45.0% |
| !! | TATATGTGTCGGTGTCGTGT+CGG | + | chr1.1:56249321-56249340 | MS.gene53003:intron | 45.0% |
| !!! | CTTGGGAGGTACCATTCTTT+TGG | - | chr1.1:56246670-56246689 | None:intergenic | 45.0% |
| !!! | TAATTTTATCAAATTATTAA+CGG | - | chr1.1:56249285-56249304 | None:intergenic | 5.0% |
| !!! | TTATTTTTGTTTTAAATAAA+AGG | + | chr1.1:56249441-56249460 | MS.gene53003:intron | 5.0% |
| !!! | TTTTTTTTTTAAAGAATTTA+GGG | + | chr1.1:56249890-56249909 | MS.gene53003:intron | 5.0% |
| !!! | TTTTTTTTTTTAAAGAATTT+AGG | + | chr1.1:56249889-56249908 | MS.gene53003:intron | 5.0% |
| ACCGACAAGGTTACCAGTAC+AGG | - | chr1.1:56247643-56247662 | None:intergenic | 50.0% | |
| AGCCACACTATGCCTTATGC+TGG | - | chr1.1:56248658-56248677 | None:intergenic | 50.0% | |
| AGTTGAGGCAGAGAGGATGT+TGG | - | chr1.1:56246816-56246835 | None:intergenic | 50.0% | |
| ATCACCTCAGAGACTTCTCC+TGG | + | chr1.1:56247313-56247332 | MS.gene53003:CDS | 50.0% | |
| CAGACTTCTCTGTCCTGAAG+AGG | + | chr1.1:56247001-56247020 | MS.gene53003:CDS | 50.0% | |
| CGGACCTAGACCATCGATAT+TGG | - | chr1.1:56248888-56248907 | None:intergenic | 50.0% | |
| CTCTTCAGGACAGAGAAGTC+TGG | - | chr1.1:56247003-56247022 | None:intergenic | 50.0% | |
| CTTAGAAGAGCCCATCCTGA+TGG | - | chr1.1:56251001-56251020 | None:intergenic | 50.0% | |
| GAACACTTCTCTGAGCTACC+AGG | + | chr1.1:56249473-56249492 | MS.gene53003:CDS | 50.0% | |
| GCTACCATTGTTGCCTGTAC+TGG | + | chr1.1:56247627-56247646 | MS.gene53003:CDS | 50.0% | |
| GGCACTACGACCCAAAAGAA+TGG | + | chr1.1:56246656-56246675 | MS.gene53003:CDS | 50.0% | |
| GTGCACACCAGACAACAATG+TGG | + | chr1.1:56247283-56247302 | MS.gene53003:CDS | 50.0% | |
| TACTTGTGGACGTGTGATGG+AGG | + | chr1.1:56251234-56251253 | MS.gene53003:CDS | 50.0% | |
| TCACCTCAGAGACTTCTCCT+GGG | + | chr1.1:56247314-56247333 | MS.gene53003:CDS | 50.0% | |
| TCCATCACACGTCCACAAGT+AGG | - | chr1.1:56251235-56251254 | None:intergenic | 50.0% | |
| TCCTACTTGTGGACGTGTGA+TGG | + | chr1.1:56251231-56251250 | MS.gene53003:CDS | 50.0% | |
| TTCGCAGTGATCAACCCTCA+AGG | + | chr1.1:56249548-56249567 | MS.gene53003:CDS | 50.0% | |
| ! | GCCTGTACTGGTAACCTTGT+CGG | + | chr1.1:56247639-56247658 | MS.gene53003:CDS | 50.0% |
| ! | GGATGGGCTCTTCTAAGTAG+AGG | + | chr1.1:56251004-56251023 | MS.gene53003:CDS | 50.0% |
| ! | TGACAGATGATAACGACCCG+CGG | + | chr1.1:56247249-56247268 | MS.gene53003:intron | 50.0% |
| !! | AGCTGTGTGTTTCTGGCTGT+GGG | - | chr1.1:56250445-56250464 | None:intergenic | 50.0% |
| !! | AGGAGAAGTCTCTGAGGTGA+TGG | - | chr1.1:56247314-56247333 | None:intergenic | 50.0% |
| ATGGAGGCAACGACCCAAAG+TGG | + | chr1.1:56250750-56250769 | MS.gene53003:CDS | 55.0% | |
| CTTCCCAGGAGAAGTCTCTG+AGG | - | chr1.1:56247320-56247339 | None:intergenic | 55.0% | |
| GAGGCTCAGCTGTGTGTTTC+TGG | - | chr1.1:56250452-56250471 | None:intergenic | 55.0% | |
| TGGAGGCAACGACCCAAAGT+GGG | + | chr1.1:56250751-56250770 | MS.gene53003:CDS | 55.0% | |
| TGGGCAGCATGGTCTGCTTT+CGG | + | chr1.1:56247531-56247550 | MS.gene53003:CDS | 55.0% | |
| ! | TGGGTCGTAGTGCCACTGAT+TGG | - | chr1.1:56246650-56246669 | None:intergenic | 55.0% |
| !! | CAGCTGTGTGTTTCTGGCTG+TGG | - | chr1.1:56250446-56250465 | None:intergenic | 55.0% |
| !! | TGTTTCTGGCTGTGGGCAAC+AGG | - | chr1.1:56250438-56250457 | None:intergenic | 55.0% |
| GTGCACATTCTGCTGTGCCG+CGG | - | chr1.1:56247269-56247288 | None:intergenic | 60.0% | |
| TCTCTGAGCTACCAGGGCGT+GGG | + | chr1.1:56249480-56249499 | MS.gene53003:CDS | 60.0% | |
| TGCACATTCTGCTGTGCCGC+GGG | - | chr1.1:56247268-56247287 | None:intergenic | 60.0% | |
| TTCTCTGAGCTACCAGGGCG+TGG | + | chr1.1:56249479-56249498 | MS.gene53003:CDS | 60.0% | |
| !! | GCAGGGGAGCATCCAGCATA+AGG | + | chr1.1:56248643-56248662 | MS.gene53003:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 56246620 | 56251315 | 56246620 | ID=MS.gene53003 |
| chr1.1 | mRNA | 56246620 | 56251315 | 56246620 | ID=MS.gene53003.t1;Parent=MS.gene53003 |
| chr1.1 | exon | 56246620 | 56246865 | 56246620 | ID=MS.gene53003.t1.exon1;Parent=MS.gene53003.t1 |
| chr1.1 | CDS | 56246620 | 56246865 | 56246620 | ID=cds.MS.gene53003.t1;Parent=MS.gene53003.t1 |
| chr1.1 | exon | 56246982 | 56247035 | 56246982 | ID=MS.gene53003.t1.exon2;Parent=MS.gene53003.t1 |
| chr1.1 | CDS | 56246982 | 56247035 | 56246982 | ID=cds.MS.gene53003.t1;Parent=MS.gene53003.t1 |
| chr1.1 | exon | 56247255 | 56247667 | 56247255 | ID=MS.gene53003.t1.exon3;Parent=MS.gene53003.t1 |
| chr1.1 | CDS | 56247255 | 56247667 | 56247255 | ID=cds.MS.gene53003.t1;Parent=MS.gene53003.t1 |
| chr1.1 | exon | 56247765 | 56247856 | 56247765 | ID=MS.gene53003.t1.exon4;Parent=MS.gene53003.t1 |
| chr1.1 | CDS | 56247765 | 56247856 | 56247765 | ID=cds.MS.gene53003.t1;Parent=MS.gene53003.t1 |
| chr1.1 | exon | 56247965 | 56248104 | 56247965 | ID=MS.gene53003.t1.exon5;Parent=MS.gene53003.t1 |
| chr1.1 | CDS | 56247965 | 56248104 | 56247965 | ID=cds.MS.gene53003.t1;Parent=MS.gene53003.t1 |
| chr1.1 | exon | 56248957 | 56249189 | 56248957 | ID=MS.gene53003.t1.exon6;Parent=MS.gene53003.t1 |
| chr1.1 | CDS | 56248957 | 56249189 | 56248957 | ID=cds.MS.gene53003.t1;Parent=MS.gene53003.t1 |
| chr1.1 | exon | 56249463 | 56249715 | 56249463 | ID=MS.gene53003.t1.exon7;Parent=MS.gene53003.t1 |
| chr1.1 | CDS | 56249463 | 56249715 | 56249463 | ID=cds.MS.gene53003.t1;Parent=MS.gene53003.t1 |
| chr1.1 | exon | 56250719 | 56251315 | 56250719 | ID=MS.gene53003.t1.exon8;Parent=MS.gene53003.t1 |
| chr1.1 | CDS | 56250719 | 56251315 | 56250719 | ID=cds.MS.gene53003.t1;Parent=MS.gene53003.t1 |
| Gene Sequence |
| Protein sequence |
