Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057978.t1 | KEH41313.1 | 81.6 | 190 | 8 | 1 | 72 | 234 | 464 | 653 | 7.30E-79 | 303.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057978.t1 | Q9FPT1 | 67.0 | 197 | 36 | 3 | 67 | 234 | 457 | 653 | 3.8e-68 | 259.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057978.t1 | A0A072VIQ6 | 81.6 | 190 | 8 | 1 | 72 | 234 | 464 | 653 | 5.2e-79 | 303.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057915 | MS.gene057978 | 0.812695 | 3.72E-51 | -1.69E-46 |
| MS.gene057978 | MS.gene067473 | 0.80209 | 6.62E-49 | -1.69E-46 |
| MS.gene057978 | MS.gene45641 | 0.800398 | 1.47E-48 | -1.69E-46 |
| MS.gene057978 | MS.gene50869 | 0.823883 | 1.09E-53 | -1.69E-46 |
| MS.gene057978 | MS.gene51818 | 0.808061 | 3.73E-50 | -1.69E-46 |
| MS.gene057978 | MS.gene53064 | 0.812331 | 4.47E-51 | -1.69E-46 |
| MS.gene057978 | MS.gene93682 | 0.81429 | 1.66E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057978.t1 | MTR_1g041240 | 79.082 | 196 | 13 | 2 | 67 | 234 | 457 | 652 | 6.96e-100 | 315 |
| MS.gene057978.t1 | MTR_1g041240 | 79.082 | 196 | 13 | 2 | 67 | 234 | 458 | 653 | 7.42e-100 | 315 |
| MS.gene057978.t1 | MTR_1g041240 | 79.082 | 196 | 13 | 2 | 67 | 234 | 459 | 654 | 7.51e-100 | 315 |
| MS.gene057978.t1 | MTR_3g079840 | 65.306 | 196 | 40 | 2 | 67 | 234 | 457 | 652 | 8.87e-84 | 271 |
| MS.gene057978.t1 | MTR_3g079840 | 65.306 | 196 | 40 | 2 | 67 | 234 | 458 | 653 | 9.13e-84 | 271 |
| MS.gene057978.t1 | MTR_5g086700 | 64.796 | 196 | 41 | 2 | 67 | 234 | 462 | 657 | 9.16e-84 | 271 |
| MS.gene057978.t1 | MTR_5g086700 | 64.796 | 196 | 41 | 2 | 67 | 234 | 462 | 657 | 9.49e-84 | 271 |
| MS.gene057978.t1 | MTR_5g091530 | 50.400 | 125 | 35 | 1 | 137 | 234 | 84 | 208 | 5.45e-34 | 127 |
| MS.gene057978.t1 | MTR_5g091550 | 67.857 | 84 | 27 | 0 | 151 | 234 | 182 | 265 | 7.47e-34 | 128 |
| MS.gene057978.t1 | MTR_5g091550 | 67.857 | 84 | 27 | 0 | 151 | 234 | 187 | 270 | 8.39e-34 | 128 |
| MS.gene057978.t1 | MTR_5g091410 | 50.847 | 118 | 57 | 1 | 131 | 247 | 19 | 136 | 1.44e-32 | 125 |
| MS.gene057978.t1 | MTR_5g091450 | 49.600 | 125 | 36 | 1 | 137 | 234 | 156 | 280 | 5.21e-31 | 121 |
| MS.gene057978.t1 | MTR_5g091430 | 57.143 | 91 | 39 | 0 | 144 | 234 | 3 | 93 | 7.67e-30 | 117 |
| MS.gene057978.t1 | MTR_5g091180 | 45.385 | 130 | 44 | 1 | 137 | 239 | 169 | 298 | 8.07e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057978.t1 | AT5G06600 | 67.005 | 197 | 36 | 3 | 67 | 234 | 457 | 653 | 7.09e-84 | 270 |
| MS.gene057978.t1 | AT5G06600 | 67.005 | 197 | 36 | 3 | 67 | 234 | 456 | 652 | 3.21e-83 | 270 |
| MS.gene057978.t1 | AT5G06600 | 67.005 | 197 | 36 | 3 | 67 | 234 | 457 | 653 | 3.51e-83 | 270 |
| MS.gene057978.t1 | AT3G11910 | 64.796 | 196 | 41 | 2 | 67 | 234 | 455 | 650 | 1.06e-81 | 266 |
| MS.gene057978.t1 | AT3G11910 | 64.796 | 196 | 41 | 2 | 67 | 234 | 455 | 650 | 1.06e-81 | 266 |
| MS.gene057978.t1 | AT3G11910 | 64.796 | 196 | 41 | 2 | 67 | 234 | 456 | 651 | 1.08e-81 | 266 |
| MS.gene057978.t1 | AT3G11910 | 64.796 | 196 | 41 | 2 | 67 | 234 | 456 | 651 | 1.08e-81 | 266 |
Find 46 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTACTTTGTAAATTTAAA+AGG | 0.221866 | 3.4:+14804476 | None:intergenic |
| CATACCTTGAAAATGGTAAA+TGG | 0.297202 | 3.4:+14803968 | None:intergenic |
| CATAGGTCATACCTTGAAAA+TGG | 0.297712 | 3.4:+14803961 | None:intergenic |
| AATTGGTTCTGTCGATGCTT+TGG | 0.299202 | 3.4:-14802181 | MS.gene057978:CDS |
| GGTTGTTGATAACAAATTCT+AGG | 0.311115 | 3.4:-14802121 | None:intergenic |
| TTGGCCGAAATGTATGGTTT+TGG | 0.327148 | 3.4:+14803161 | None:intergenic |
| TTGGGCAATAGCGAGGTTAT+TGG | 0.331692 | 3.4:-14802162 | MS.gene057978:CDS |
| GAAGAAGTTGCGAAAGAGTT+TGG | 0.339349 | 3.4:-14803226 | MS.gene057978:CDS |
| CAGTTACCTCTTACAAATCC+TGG | 0.355815 | 3.4:-14804512 | MS.gene057978:CDS |
| ATTGGTTCTGTCGATGCTTT+GGG | 0.362702 | 3.4:-14802180 | MS.gene057978:CDS |
| GTGTCTTACACACCTAGTTT+TGG | 0.374735 | 3.4:+14805084 | None:intergenic |
| GATGATCTGCACGAGCAAAT+TGG | 0.391133 | 3.4:-14804058 | MS.gene057978:CDS |
| CAGGTAATGATTATTACAAT+TGG | 0.398420 | 3.4:-14802198 | MS.gene057978:CDS |
| GGATATATTCTTTGATCTTG+TGG | 0.407652 | 3.4:-14804032 | MS.gene057978:CDS |
| TAACAAAAGAAGATACAAAC+AGG | 0.408899 | 3.4:-14804692 | MS.gene057978:CDS |
| GTTTAAATTCGATGATGAAC+AGG | 0.423127 | 3.4:-14804715 | MS.gene057978:CDS |
| AGCGCCAAAACCATACATTT+CGG | 0.425954 | 3.4:-14803165 | MS.gene057978:CDS |
| TGAGCTGTCACTGGTCTACT+TGG | 0.432854 | 3.4:+14803142 | None:intergenic |
| GTCTACTTGGCCGAAATGTA+TGG | 0.442229 | 3.4:+14803155 | None:intergenic |
| GACAGCTCAGGAGGAAGCAC+GGG | 0.459367 | 3.4:-14803128 | MS.gene057978:CDS |
| GCAACAACTGTGCAGTCATC+TGG | 0.460277 | 3.4:-14805338 | MS.gene057978:CDS |
| GCTTCCTCCTGAGCTGTCAC+TGG | 0.476559 | 3.4:+14803133 | None:intergenic |
| TTAAATCTCTTGCCAAAACT+AGG | 0.479799 | 3.4:-14805096 | MS.gene057978:intron |
| GCAGTATGGTGGTGAAGAAG+AGG | 0.488818 | 3.4:-14804658 | MS.gene057978:intron |
| TTGAACCCAGGATTTGTAAG+AGG | 0.493196 | 3.4:+14804506 | None:intergenic |
| GCAATGCCGCTGCCAACAGA+AGG | 0.501665 | 3.4:+14805291 | None:intergenic |
| AAGTAGACCAGTGACAGCTC+AGG | 0.509457 | 3.4:-14803140 | MS.gene057978:CDS |
| TTGCTGCTAGCGCCTTCTGT+TGG | 0.521842 | 3.4:-14805303 | MS.gene057978:CDS |
| CTAGCGCCTTCTGTTGGCAG+CGG | 0.522877 | 3.4:-14805297 | MS.gene057978:CDS |
| AGGGCTTTAGAAGAGCAGTA+TGG | 0.531445 | 3.4:-14804672 | MS.gene057978:CDS |
| TGTTGATATTGCAGGATCGA+AGG | 0.538287 | 3.4:-14805172 | MS.gene057978:intron |
| AGTTACCTCTTACAAATCCT+GGG | 0.542184 | 3.4:-14804511 | MS.gene057978:CDS |
| TGACAGCTCAGGAGGAAGCA+CGG | 0.544525 | 3.4:-14803129 | MS.gene057978:CDS |
| ACAACTTACTTGAAGGTGGC+TGG | 0.546921 | 3.4:+14804376 | None:intergenic |
| GTTGATATTGCAGGATCGAA+GGG | 0.554099 | 3.4:-14805171 | MS.gene057978:intron |
| GGATAAGATAATTTGTAATG+TGG | 0.558559 | 3.4:-14804414 | MS.gene057978:CDS |
| AAAGGAGAGTTGTTGAACCC+AGG | 0.558997 | 3.4:+14804494 | None:intergenic |
| AATTTGTAATGTGGATGAGA+AGG | 0.565506 | 3.4:-14804405 | MS.gene057978:CDS |
| CGATGCTTTGGGCAATAGCG+AGG | 0.601045 | 3.4:-14802169 | MS.gene057978:CDS |
| TAGACCAGTGACAGCTCAGG+AGG | 0.602851 | 3.4:-14803137 | MS.gene057978:CDS |
| TAGCGAGGTTATTGGCAAAG+AGG | 0.623848 | 3.4:-14802154 | MS.gene057978:CDS |
| CTATGTTCGTGAAAGTGACA+AGG | 0.634378 | 3.4:-14804435 | MS.gene057978:CDS |
| TCAGACAACTTACTTGAAGG+TGG | 0.648925 | 3.4:+14804372 | None:intergenic |
| TCTGCACGAGCAAATTGGAA+AGG | 0.658531 | 3.4:-14804053 | MS.gene057978:CDS |
| GCTTTAGAAGAGCAGTATGG+TGG | 0.667170 | 3.4:-14804669 | MS.gene057978:CDS |
| AACAAAAGAAGATACAAACA+GGG | 0.731126 | 3.4:-14804691 | MS.gene057978:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTACATAATAAAATCAT+AGG | + | chr3.4:14803589-14803608 | None:intergenic | 10.0% |
| !!! | CAAATAATAATTAGTTTTAT+AGG | + | chr3.4:14804244-14804263 | None:intergenic | 10.0% |
| !! | CCAAAAAAAAAACATTATTA+AGG | + | chr3.4:14804579-14804598 | None:intergenic | 15.0% |
| !! | TAAAACCAATCATTTAAAAA+TGG | + | chr3.4:14802506-14802525 | None:intergenic | 15.0% |
| !!! | ATAATTCATTTTCATTTAGA+TGG | - | chr3.4:14804926-14804945 | MS.gene057978:intron | 15.0% |
| !!! | ATTTTATTTTATTCATCTGT+TGG | - | chr3.4:14803431-14803450 | MS.gene057978:intron | 15.0% |
| !!! | CCTTAATAATGTTTTTTTTT+TGG | - | chr3.4:14804576-14804595 | MS.gene057978:intron | 15.0% |
| !!! | GTCATTATTTTTTTTCTTTT+GGG | - | chr3.4:14803363-14803382 | MS.gene057978:intron | 15.0% |
| !!! | TATATTATATCCATGTTTTT+TGG | - | chr3.4:14802746-14802765 | MS.gene057978:intron | 15.0% |
| !!! | TGTCATTATTTTTTTTCTTT+TGG | - | chr3.4:14803362-14803381 | MS.gene057978:intron | 15.0% |
| !!! | TGTTAAATTATTCTTTGTTT+TGG | - | chr3.4:14803961-14803980 | MS.gene057978:intron | 15.0% |
| !!! | TTTTATTTACTAAAATACAG+TGG | - | chr3.4:14804621-14804640 | MS.gene057978:intron | 15.0% |
| !! | AAAGTAGAAAACTGAATAAA+AGG | + | chr3.4:14802301-14802320 | None:intergenic | 20.0% |
| !! | AAGTAGAAAACTGAATAAAA+GGG | + | chr3.4:14802300-14802319 | None:intergenic | 20.0% |
| !! | AATAATGAAACACATAACAT+TGG | + | chr3.4:14804450-14804469 | None:intergenic | 20.0% |
| !! | AGAAAAAAAATAATGACAAC+TGG | + | chr3.4:14803360-14803379 | None:intergenic | 20.0% |
| !! | GAGTACTTTGTAAATTTAAA+AGG | + | chr3.4:14803057-14803076 | None:intergenic | 20.0% |
| !! | TCATTATTTCATAAATAGCA+GGG | - | chr3.4:14804462-14804481 | MS.gene057978:CDS | 20.0% |
| !! | TGTTTGCAATACTTATTTAT+TGG | - | chr3.4:14804902-14804921 | MS.gene057978:intron | 20.0% |
| !! | TTCATTATTTCATAAATAGC+AGG | - | chr3.4:14804461-14804480 | MS.gene057978:CDS | 20.0% |
| !!! | AACATGTTTTCTTTTTTTAC+AGG | - | chr3.4:14805307-14805326 | MS.gene057978:CDS | 20.0% |
| !!! | AGTTTCATCATTTTTGTTTA+TGG | - | chr3.4:14802629-14802648 | MS.gene057978:intron | 20.0% |
| !!! | ATTTCAAGTAACGATAAAAA+AGG | + | chr3.4:14802566-14802585 | None:intergenic | 20.0% |
| !!! | CTCTATTTTTGTTTTGTTTT+TGG | - | chr3.4:14802925-14802944 | MS.gene057978:intron | 20.0% |
| !!! | TCAACAATACATTTTAGATA+AGG | - | chr3.4:14803236-14803255 | MS.gene057978:intron | 20.0% |
| !!! | TCTAAAATGTATTGTTGAAA+AGG | + | chr3.4:14803234-14803253 | None:intergenic | 20.0% |
| !!! | TTATTTTTTGTTGATATTGC+AGG | - | chr3.4:14802350-14802369 | MS.gene057978:intron | 20.0% |
| ! | AAAATAATGACAACTGGAAA+AGG | + | chr3.4:14803354-14803373 | None:intergenic | 25.0% |
| ! | AAATAGATCAACAATACCAA+AGG | + | chr3.4:14804209-14804228 | None:intergenic | 25.0% |
| ! | AACAAAAGAAGATACAAACA+GGG | - | chr3.4:14802839-14802858 | MS.gene057978:intron | 25.0% |
| ! | ACTTTAAGTATCAGTTAGTT+AGG | - | chr3.4:14805136-14805155 | MS.gene057978:CDS | 25.0% |
| ! | AGTAACGATAAAAAAGGATA+TGG | + | chr3.4:14802560-14802579 | None:intergenic | 25.0% |
| ! | AGTGTTTATTCATGAAAGAA+GGG | + | chr3.4:14804148-14804167 | None:intergenic | 25.0% |
| ! | ATAATGACACATAAAAACTC+AGG | + | chr3.4:14804710-14804729 | None:intergenic | 25.0% |
| ! | ATATTCTGTTTGCATTTGTT+TGG | - | chr3.4:14802897-14802916 | MS.gene057978:intron | 25.0% |
| ! | ATTCAGTCACATATTGAATA+TGG | - | chr3.4:14802477-14802496 | MS.gene057978:intron | 25.0% |
| ! | ATTGAAGTTTGTCAAAACAT+GGG | - | chr3.4:14804078-14804097 | MS.gene057978:intron | 25.0% |
| ! | CAGGTAATGATTATTACAAT+TGG | - | chr3.4:14805332-14805351 | MS.gene057978:CDS | 25.0% |
| ! | TAACAAAAGAAGATACAAAC+AGG | - | chr3.4:14802838-14802857 | MS.gene057978:intron | 25.0% |
| ! | TAGTGTTTATTCATGAAAGA+AGG | + | chr3.4:14804149-14804168 | None:intergenic | 25.0% |
| ! | TCAACTTTGCAAATCATAAT+AGG | - | chr3.4:14804019-14804038 | MS.gene057978:CDS | 25.0% |
| ! | TGCAAATCATAATAGGATTT+AGG | - | chr3.4:14804026-14804045 | MS.gene057978:CDS | 25.0% |
| ! | TTTGGTATTGTTGATCTATT+TGG | - | chr3.4:14804208-14804227 | MS.gene057978:intron | 25.0% |
| !! | ACTTTTGATATTTCCAGTTT+TGG | - | chr3.4:14802316-14802335 | MS.gene057978:intron | 25.0% |
| !! | CTTTTGATATTTCCAGTTTT+GGG | - | chr3.4:14802317-14802336 | MS.gene057978:intron | 25.0% |
| !! | GGATAAGATAATTTGTAATG+TGG | - | chr3.4:14803116-14803135 | MS.gene057978:intron | 25.0% |
| !!! | TTTTCTTTTTTTACAGGTTC+AGG | - | chr3.4:14805313-14805332 | MS.gene057978:CDS | 25.0% |
| AAAAAGGATATGGAACTTTG+TGG | + | chr3.4:14802550-14802569 | None:intergenic | 30.0% | |
| AAAGGATGAAGAAGTAAACA+AGG | + | chr3.4:14804191-14804210 | None:intergenic | 30.0% | |
| AAAGTCATGACCAAAAAACA+TGG | + | chr3.4:14802759-14802778 | None:intergenic | 30.0% | |
| AACACAGAAAATCAAAGAGA+TGG | + | chr3.4:14803995-14804014 | None:intergenic | 30.0% | |
| AACCAATGAAAACAACCAAA+AGG | - | chr3.4:14804866-14804885 | MS.gene057978:intron | 30.0% | |
| AAGGTTAAAGAAAGAACAAG+AGG | - | chr3.4:14803255-14803274 | MS.gene057978:intron | 30.0% | |
| AATTGTCAATTCATGCTACA+AGG | + | chr3.4:14802685-14802704 | None:intergenic | 30.0% | |
| AATTTGTAATGTGGATGAGA+AGG | - | chr3.4:14803125-14803144 | MS.gene057978:intron | 30.0% | |
| ACCAATGAAAACAACCAAAA+GGG | - | chr3.4:14804867-14804886 | MS.gene057978:intron | 30.0% | |
| ACTGATAATAAGAGTTCGTA+AGG | - | chr3.4:14803399-14803418 | MS.gene057978:intron | 30.0% | |
| ATCAAACATTTCATATCCAG+AGG | + | chr3.4:14804737-14804756 | None:intergenic | 30.0% | |
| CATACCTTGAAAATGGTAAA+TGG | + | chr3.4:14803565-14803584 | None:intergenic | 30.0% | |
| CTAGTTAAACAGATGACAAA+AGG | + | chr3.4:14803742-14803761 | None:intergenic | 30.0% | |
| GAAAACTGAATAAAAGGGTT+TGG | + | chr3.4:14802295-14802314 | None:intergenic | 30.0% | |
| GATTGAAGTTTGTCAAAACA+TGG | - | chr3.4:14804077-14804096 | MS.gene057978:intron | 30.0% | |
| GGATATATTCTTTGATCTTG+TGG | - | chr3.4:14803498-14803517 | MS.gene057978:intron | 30.0% | |
| GTTTAAATTCGATGATGAAC+AGG | - | chr3.4:14802815-14802834 | MS.gene057978:intron | 30.0% | |
| TAACATAATTCACCAAATGC+AGG | + | chr3.4:14803946-14803965 | None:intergenic | 30.0% | |
| TACCAAATAATCCAGATACA+AGG | + | chr3.4:14802607-14802626 | None:intergenic | 30.0% | |
| TCAAACATTTCATATCCAGA+GGG | + | chr3.4:14804736-14804755 | None:intergenic | 30.0% | |
| TCATTTGTACACCATTGTAA+AGG | - | chr3.4:14803312-14803331 | MS.gene057978:intron | 30.0% | |
| TGTCTAATCAATCCTGAATT+TGG | - | chr3.4:14803610-14803629 | MS.gene057978:intron | 30.0% | |
| TGTGTTCTTATATTGTGCAT+AGG | - | chr3.4:14804954-14804973 | MS.gene057978:intron | 30.0% | |
| TTAAATCTCTTGCCAAAACT+AGG | - | chr3.4:14802434-14802453 | MS.gene057978:intron | 30.0% | |
| TTAACTAGAACTGAAAGAGT+GGG | - | chr3.4:14803754-14803773 | MS.gene057978:intron | 30.0% | |
| TTATTTCATAAATAGCAGGG+TGG | - | chr3.4:14804465-14804484 | MS.gene057978:CDS | 30.0% | |
| TTGAAGAACCTAAATTTACG+AGG | - | chr3.4:14804772-14804791 | MS.gene057978:intron | 30.0% | |
| TTGAAGTTTGTCAAAACATG+GGG | - | chr3.4:14804079-14804098 | MS.gene057978:intron | 30.0% | |
| TTGTTTACTTCTTCATCCTT+TGG | - | chr3.4:14804190-14804209 | MS.gene057978:intron | 30.0% | |
| TTTAACTAGAACTGAAAGAG+TGG | - | chr3.4:14803753-14803772 | MS.gene057978:intron | 30.0% | |
| ! | AAAAAAGCATATCCCAAAAC+TGG | + | chr3.4:14802332-14802351 | None:intergenic | 30.0% |
| ! | TCAAAGTACCTCGTAAATTT+AGG | + | chr3.4:14804783-14804802 | None:intergenic | 30.0% |
| !! | AATGTAACTTGTGTGTTTTC+AGG | - | chr3.4:14802793-14802812 | MS.gene057978:intron | 30.0% |
| !! | TATAACCTCACTTTTAACCA+TGG | - | chr3.4:14804518-14804537 | MS.gene057978:intron | 30.0% |
| !!! | ATGATTGGTTTTACTTTGAC+CGG | - | chr3.4:14802513-14802532 | MS.gene057978:intron | 30.0% |
| !!! | GGTAGCCATTTTTAAATGAT+TGG | - | chr3.4:14802498-14802517 | MS.gene057978:intron | 30.0% |
| AAAAGGGTTTGGAAATCTCA+AGG | + | chr3.4:14802284-14802303 | None:intergenic | 35.0% | |
| AACAACTACTCGTGGAAAAA+TGG | + | chr3.4:14803658-14803677 | None:intergenic | 35.0% | |
| AACCTAGAAAGGGAGAAAAA+GGG | + | chr3.4:14805011-14805030 | None:intergenic | 35.0% | |
| AGAGAAGAAGAAGAAGGAAA+AGG | - | chr3.4:14803282-14803301 | MS.gene057978:intron | 35.0% | |
| AGTGGGAAAAAAAATCGTTC+TGG | - | chr3.4:14803771-14803790 | MS.gene057978:intron | 35.0% | |
| AGTTACCTCTTACAAATCCT+GGG | - | chr3.4:14803019-14803038 | MS.gene057978:intron | 35.0% | |
| ATGAAATTGAGAGATCCTTC+TGG | - | chr3.4:14803819-14803838 | MS.gene057978:intron | 35.0% | |
| ATGACATCAAATTCAGTTGC+TGG | - | chr3.4:14805064-14805083 | MS.gene057978:intron | 35.0% | |
| CATAGGTCATACCTTGAAAA+TGG | + | chr3.4:14803572-14803591 | None:intergenic | 35.0% | |
| CTTTCCTTACAACCTAGAAA+GGG | + | chr3.4:14805021-14805040 | None:intergenic | 35.0% | |
| GAAGAAGTAAACAAGGAATG+TGG | + | chr3.4:14804184-14804203 | None:intergenic | 35.0% | |
| GAATCAGACAACTTACTTGA+AGG | + | chr3.4:14803164-14803183 | None:intergenic | 35.0% | |
| GGAAAAAGAGAAGAAGAAGA+AGG | - | chr3.4:14803276-14803295 | MS.gene057978:intron | 35.0% | |
| GGATACAATCATCAGACATA+TGG | + | chr3.4:14803721-14803740 | None:intergenic | 35.0% | |
| GTCCTTGTATCTGGATTATT+TGG | - | chr3.4:14802602-14802621 | MS.gene057978:intron | 35.0% | |
| GTGGGAAAAAAAATCGTTCT+GGG | - | chr3.4:14803772-14803791 | MS.gene057978:intron | 35.0% | |
| TAGAGTTGTGACCTTTACAA+TGG | + | chr3.4:14803326-14803345 | None:intergenic | 35.0% | |
| TAGTTGTTCATCTTTGCCAA+TGG | - | chr3.4:14803670-14803689 | MS.gene057978:intron | 35.0% | |
| TATATTGTGCATAGGTGCAA+GGG | - | chr3.4:14804962-14804981 | MS.gene057978:intron | 35.0% | |
| TCTTTCCTTACAACCTAGAA+AGG | + | chr3.4:14805022-14805041 | None:intergenic | 35.0% | |
| TGAAAAACTGTCCTTGTATC+TGG | - | chr3.4:14802593-14802612 | MS.gene057978:intron | 35.0% | |
| TGGCAAAGAGGAAAAATTGA+AGG | - | chr3.4:14805388-14805407 | MS.gene057978:CDS | 35.0% | |
| TGGGAAAAAAAATCGTTCTG+GGG | - | chr3.4:14803773-14803792 | MS.gene057978:intron | 35.0% | |
| TTATATTGTGCATAGGTGCA+AGG | - | chr3.4:14804961-14804980 | MS.gene057978:intron | 35.0% | |
| TTCAAAATCACACACTACCA+TGG | + | chr3.4:14804538-14804557 | None:intergenic | 35.0% | |
| TTGAGATCAAAGCCAAATTC+AGG | + | chr3.4:14803625-14803644 | None:intergenic | 35.0% | |
| ! | ATTCGTGACATGCGATTTTA+AGG | + | chr3.4:14805114-14805133 | None:intergenic | 35.0% |
| ! | CTGATAATGAAGCTTTGATC+AGG | - | chr3.4:14804282-14804301 | MS.gene057978:intron | 35.0% |
| !! | GATGCCATTTACCATTTTCA+AGG | - | chr3.4:14803558-14803577 | MS.gene057978:intron | 35.0% |
| !! | TCCCTTTTGGTTGTTTTCAT+TGG | + | chr3.4:14804871-14804890 | None:intergenic | 35.0% |
| !! | TTTTGTTGTCAGTTGCCTAT+TGG | - | chr3.4:14803914-14803933 | MS.gene057978:intron | 35.0% |
| !!! | ATTGCTGTTTTGTTTGTGTG+TGG | - | chr3.4:14802257-14802276 | MS.gene057978:intron | 35.0% |
| !!! | TGACTCTTTTTTAGCAGTAG+TGG | - | chr3.4:14805193-14805212 | MS.gene057978:intron | 35.0% |
| AAATGCAGGCTACATCCAAT+AGG | + | chr3.4:14803932-14803951 | None:intergenic | 40.0% | |
| ACCTAGAAAGGGAGAAAAAG+GGG | + | chr3.4:14805010-14805029 | None:intergenic | 40.0% | |
| AGCGCCAAAACCATACATTT+CGG | - | chr3.4:14804365-14804384 | MS.gene057978:intron | 40.0% | |
| ATCATCATCACGAGCAATCT+GGG | + | chr3.4:14803458-14803477 | None:intergenic | 40.0% | |
| CAAAAACGTTGGTACTCAAC+TGG | + | chr3.4:14804334-14804353 | None:intergenic | 40.0% | |
| CAAAGATGAACAACTACTCG+TGG | + | chr3.4:14803666-14803685 | None:intergenic | 40.0% | |
| CAACCTAGAAAGGGAGAAAA+AGG | + | chr3.4:14805012-14805031 | None:intergenic | 40.0% | |
| CACTACCATGGTTAAAAGTG+AGG | + | chr3.4:14804526-14804545 | None:intergenic | 40.0% | |
| CAGTTACCTCTTACAAATCC+TGG | - | chr3.4:14803018-14803037 | MS.gene057978:intron | 40.0% | |
| CTATGTTCGTGAAAGTGACA+AGG | - | chr3.4:14803095-14803114 | MS.gene057978:intron | 40.0% | |
| CTTTGTGGTTTAAGTCACTC+CGG | + | chr3.4:14802535-14802554 | None:intergenic | 40.0% | |
| GAAGAAGTTGCGAAAGAGTT+TGG | - | chr3.4:14804304-14804323 | MS.gene057978:intron | 40.0% | |
| GATATTGATATAAGCCGCTG+TGG | - | chr3.4:14802708-14802727 | MS.gene057978:intron | 40.0% | |
| GTTGATATTGCAGGATCGAA+GGG | - | chr3.4:14802359-14802378 | MS.gene057978:intron | 40.0% | |
| TATGCAGCAACAGAGATCAT+AGG | + | chr3.4:14803874-14803893 | None:intergenic | 40.0% | |
| TATTGGATGTAGCCTGCATT+TGG | - | chr3.4:14803931-14803950 | MS.gene057978:intron | 40.0% | |
| TCAGACAACTTACTTGAAGG+TGG | + | chr3.4:14803161-14803180 | None:intergenic | 40.0% | |
| TGTTGATATTGCAGGATCGA+AGG | - | chr3.4:14802358-14802377 | MS.gene057978:intron | 40.0% | |
| TTCTCCCTTTCTAGGTTGTA+AGG | - | chr3.4:14805014-14805033 | MS.gene057978:intron | 40.0% | |
| TTGAACCCAGGATTTGTAAG+AGG | + | chr3.4:14803027-14803046 | None:intergenic | 40.0% | |
| ! | ATGTGTCATTATGAACCCTC+TGG | - | chr3.4:14804718-14804737 | MS.gene057978:CDS | 40.0% |
| ! | CAATCACAGTGAATCCCTTT+TGG | + | chr3.4:14804884-14804903 | None:intergenic | 40.0% |
| ! | CAGTTGAGTACCAACGTTTT+TGG | - | chr3.4:14804332-14804351 | MS.gene057978:intron | 40.0% |
| ! | CTCACTCATTCTTTTCCAGA+AGG | + | chr3.4:14803837-14803856 | None:intergenic | 40.0% |
| ! | GTGTCTTACACACCTAGTTT+TGG | + | chr3.4:14802449-14802468 | None:intergenic | 40.0% |
| ! | TTGGCCGAAATGTATGGTTT+TGG | + | chr3.4:14804372-14804391 | None:intergenic | 40.0% |
| !! | AATTGGTTCTGTCGATGCTT+TGG | - | chr3.4:14805349-14805368 | MS.gene057978:CDS | 40.0% |
| !! | AGTACCAACGTTTTTGGATG+TGG | - | chr3.4:14804338-14804357 | MS.gene057978:intron | 40.0% |
| !! | ATTGGTTCTGTCGATGCTTT+GGG | - | chr3.4:14805350-14805369 | MS.gene057978:CDS | 40.0% |
| !! | GTACCAACGTTTTTGGATGT+GGG | - | chr3.4:14804339-14804358 | MS.gene057978:intron | 40.0% |
| !!! | ATGCGATTTTAAGGTCGTCA+AGG | + | chr3.4:14805105-14805124 | None:intergenic | 40.0% |
| AAAGGAGAGTTGTTGAACCC+AGG | + | chr3.4:14803039-14803058 | None:intergenic | 45.0% | |
| ACAACTTACTTGAAGGTGGC+TGG | + | chr3.4:14803157-14803176 | None:intergenic | 45.0% | |
| CAAGGAGACATTCACTCCAT+TGG | + | chr3.4:14803689-14803708 | None:intergenic | 45.0% | |
| GAAGAAGAAGGAAAAGGCTG+AGG | - | chr3.4:14803288-14803307 | MS.gene057978:intron | 45.0% | |
| GACATATGGCAACACTTGCA+AGG | + | chr3.4:14803707-14803726 | None:intergenic | 45.0% | |
| GATCATCATCACGAGCAATC+TGG | + | chr3.4:14803459-14803478 | None:intergenic | 45.0% | |
| GATGATCTGCACGAGCAAAT+TGG | - | chr3.4:14803472-14803491 | MS.gene057978:intron | 45.0% | |
| GTCTACTTGGCCGAAATGTA+TGG | + | chr3.4:14804378-14804397 | None:intergenic | 45.0% | |
| TAGATTCAACAACGCCACAG+CGG | + | chr3.4:14802725-14802744 | None:intergenic | 45.0% | |
| TAGCGAGGTTATTGGCAAAG+AGG | - | chr3.4:14805376-14805395 | MS.gene057978:CDS | 45.0% | |
| TCATCATCACGAGCAATCTG+GGG | + | chr3.4:14803457-14803476 | None:intergenic | 45.0% | |
| TCTGCACGAGCAAATTGGAA+AGG | - | chr3.4:14803477-14803496 | MS.gene057978:intron | 45.0% | |
| TTGCCCACATCCAAAAACGT+TGG | + | chr3.4:14804345-14804364 | None:intergenic | 45.0% | |
| TTGGGCAATAGCGAGGTTAT+TGG | - | chr3.4:14805368-14805387 | MS.gene057978:CDS | 45.0% | |
| ! | CTCAGGTGCTACAAGAACTA+CGG | + | chr3.4:14804693-14804712 | None:intergenic | 45.0% |
| ! | TCCCCTTTTTCTCCCTTTCT+AGG | - | chr3.4:14805006-14805025 | MS.gene057978:intron | 45.0% |
| !! | AGGGCTTTAGAAGAGCAGTA+TGG | - | chr3.4:14802858-14802877 | MS.gene057978:intron | 45.0% |
| !! | GCTTTAGAAGAGCAGTATGG+TGG | - | chr3.4:14802861-14802880 | MS.gene057978:intron | 45.0% |
| !! | AGTAAATAAAAAAAAAAAAT+TGG | + | chr3.4:14804612-14804631 | None:intergenic | 5.0% |
| !!! | AACATTATTTTTAATTAATT+AGG | - | chr3.4:14804049-14804068 | MS.gene057978:CDS | 5.0% |
| AAGTAGACCAGTGACAGCTC+AGG | - | chr3.4:14804390-14804409 | MS.gene057978:CDS | 50.0% | |
| GCAACAACTGTGCAGTCATC+TGG | - | chr3.4:14802192-14802211 | MS.gene057978:CDS | 50.0% | |
| GGCTGACAAGTGTGTGAGAA+TGG | - | chr3.4:14805214-14805233 | MS.gene057978:intron | 50.0% | |
| ! | GCAGTATGGTGGTGAAGAAG+AGG | - | chr3.4:14802872-14802891 | MS.gene057978:intron | 50.0% |
| ! | TGAGCTGTCACTGGTCTACT+TGG | + | chr3.4:14804391-14804410 | None:intergenic | 50.0% |
| TAGACCAGTGACAGCTCAGG+AGG | - | chr3.4:14804393-14804412 | MS.gene057978:CDS | 55.0% | |
| TGACAGCTCAGGAGGAAGCA+CGG | - | chr3.4:14804401-14804420 | MS.gene057978:CDS | 55.0% | |
| TTGCTGCTAGCGCCTTCTGT+TGG | - | chr3.4:14802227-14802246 | MS.gene057978:intron | 55.0% | |
| ! | CGATGCTTTGGGCAATAGCG+AGG | - | chr3.4:14805361-14805380 | MS.gene057978:CDS | 55.0% |
| CTAGCGCCTTCTGTTGGCAG+CGG | - | chr3.4:14802233-14802252 | MS.gene057978:intron | 60.0% | |
| GCAATGCCGCTGCCAACAGA+AGG | + | chr3.4:14802242-14802261 | None:intergenic | 60.0% | |
| GCTTCCTCCTGAGCTGTCAC+TGG | + | chr3.4:14804400-14804419 | None:intergenic | 60.0% | |
| ! | GACAGCTCAGGAGGAAGCAC+GGG | - | chr3.4:14804402-14804421 | MS.gene057978:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 14802122 | 14805430 | 14802122 | ID=MS.gene057978 |
| chr3.4 | mRNA | 14802122 | 14805430 | 14802122 | ID=MS.gene057978.t1;Parent=MS.gene057978 |
| chr3.4 | exon | 14805285 | 14805430 | 14805285 | ID=MS.gene057978.t1.exon1;Parent=MS.gene057978.t1 |
| chr3.4 | CDS | 14805285 | 14805430 | 14805285 | ID=cds.MS.gene057978.t1;Parent=MS.gene057978.t1 |
| chr3.4 | exon | 14805097 | 14805180 | 14805097 | ID=MS.gene057978.t1.exon2;Parent=MS.gene057978.t1 |
| chr3.4 | CDS | 14805097 | 14805180 | 14805097 | ID=cds.MS.gene057978.t1;Parent=MS.gene057978.t1 |
| chr3.4 | exon | 14804659 | 14804737 | 14804659 | ID=MS.gene057978.t1.exon3;Parent=MS.gene057978.t1 |
| chr3.4 | CDS | 14804659 | 14804737 | 14804659 | ID=cds.MS.gene057978.t1;Parent=MS.gene057978.t1 |
| chr3.4 | exon | 14804385 | 14804531 | 14804385 | ID=MS.gene057978.t1.exon4;Parent=MS.gene057978.t1 |
| chr3.4 | CDS | 14804385 | 14804531 | 14804385 | ID=cds.MS.gene057978.t1;Parent=MS.gene057978.t1 |
| chr3.4 | exon | 14803973 | 14804092 | 14803973 | ID=MS.gene057978.t1.exon5;Parent=MS.gene057978.t1 |
| chr3.4 | CDS | 14803973 | 14804092 | 14803973 | ID=cds.MS.gene057978.t1;Parent=MS.gene057978.t1 |
| chr3.4 | exon | 14803126 | 14803248 | 14803126 | ID=MS.gene057978.t1.exon6;Parent=MS.gene057978.t1 |
| chr3.4 | CDS | 14803126 | 14803248 | 14803126 | ID=cds.MS.gene057978.t1;Parent=MS.gene057978.t1 |
| chr3.4 | exon | 14802122 | 14802223 | 14802122 | ID=MS.gene057978.t1.exon7;Parent=MS.gene057978.t1 |
| chr3.4 | CDS | 14802122 | 14802223 | 14802122 | ID=cds.MS.gene057978.t1;Parent=MS.gene057978.t1 |
| Gene Sequence |
| Protein sequence |
