AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93682

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93682.t1 MTR_7g067080 96.417 307 10 1 1 306 7 313 0.0 615
MS.gene93682.t1 MTR_5g069710 59.295 312 111 9 1 305 1 303 2.35e-115 335
MS.gene93682.t1 MTR_3g462790 53.374 326 112 12 5 304 5 316 8.73e-102 301
MS.gene93682.t1 MTR_5g081860 62.381 210 70 2 5 212 3 205 2.57e-87 263
MS.gene93682.t1 MTR_1g111830 45.116 215 101 4 27 235 22 225 1.71e-54 177
MS.gene93682.t1 MTR_4g111975 39.051 274 135 6 24 271 3 270 3.42e-51 171
MS.gene93682.t1 MTR_8g063600 45.946 185 87 3 28 209 9 183 1.50e-45 156
MS.gene93682.t1 MTR_8g063870 36.694 248 125 6 27 268 6 227 2.93e-40 142
MS.gene93682.t1 MTR_6g092540 63.918 97 34 1 128 223 91 187 3.49e-33 124
MS.gene93682.t1 MTR_4g015130 75.342 73 18 0 143 215 2 74 1.93e-32 115
MS.gene93682.t1 MTR_4g100630 65.060 83 29 0 126 208 87 169 2.64e-31 119
MS.gene93682.t1 MTR_2g100930 60.417 96 30 1 129 216 104 199 3.73e-31 119
MS.gene93682.t1 MTR_8g101650 76.056 71 16 1 128 198 99 168 1.92e-30 116
MS.gene93682.t1 MTR_5g037080 67.949 78 25 0 128 205 96 173 2.11e-27 108
MS.gene93682.t1 MTR_4g107230 56.566 99 38 1 122 215 72 170 1.04e-25 103
MS.gene93682.t1 MTR_3g104370 42.208 154 73 5 92 238 54 198 3.96e-25 100
MS.gene93682.t1 MTR_5g075790 33.161 193 111 5 28 218 21 197 4.63e-23 95.1
MS.gene93682.t1 MTR_1g033620 76.667 60 14 0 150 209 21 80 5.81e-23 95.5
MS.gene93682.t1 MTR_5g088010 53.086 81 35 1 123 200 49 129 1.41e-22 94.7
MS.gene93682.t1 MTR_0036s0260 62.121 66 25 0 134 199 28 93 1.56e-22 93.6
MS.gene93682.t1 MTR_5g075760 34.184 196 106 7 28 218 12 189 1.92e-22 93.6
MS.gene93682.t1 MTR_2g090305 62.121 66 25 0 134 199 28 93 6.61e-22 91.3
MS.gene93682.t1 MTR_5g027570 46.465 99 43 2 130 218 88 186 1.09e-21 91.7
MS.gene93682.t1 MTR_5g088060 61.765 68 23 1 136 200 274 341 8.53e-21 92.4
MS.gene93682.t1 MTR_5g488160 61.765 68 23 1 136 200 274 341 8.53e-21 92.4
MS.gene93682.t1 MTR_1g033600 38.346 133 71 3 24 148 7 136 1.12e-20 86.7
MS.gene93682.t1 MTR_5g027550 57.895 76 29 1 130 202 73 148 1.03e-19 86.3
MS.gene93682.t1 MTR_1g048660 46.835 79 42 0 135 213 13 91 1.95e-18 79.0
MS.gene93682.t1 MTR_3g111880 50.000 78 36 1 27 101 5 82 5.16e-18 77.8
MS.gene93682.t1 MTR_1g022290 48.611 72 37 0 24 95 2 73 1.25e-17 77.0
MS.gene93682.t1 MTR_5g020170 46.667 75 40 0 17 91 7 81 2.97e-17 75.9
MS.gene93682.t1 MTR_3g116720 50.000 68 34 0 27 94 14 81 1.45e-16 73.6
MS.gene93682.t1 MTR_8g077360 50.000 70 34 1 26 95 2 70 5.95e-16 71.6
MS.gene93682.t1 MTR_8g077380 50.000 70 34 1 26 95 2 70 6.83e-16 71.6
MS.gene93682.t1 MTR_8g077390 50.000 70 34 1 26 95 2 70 6.83e-16 71.6
MS.gene93682.t1 MTR_6g004250 44.928 69 38 0 24 92 5 73 2.32e-15 70.5
MS.gene93682.t1 MTR_7g089210 53.030 66 31 0 32 97 15 80 2.84e-14 67.8
MS.gene93682.t1 MTR_3g013440 43.529 85 38 2 29 112 10 85 1.62e-13 65.5
MS.gene93682.t1 MTR_8g077420 47.143 70 36 1 26 95 2 70 1.84e-13 65.1
MS.gene93682.t1 MTR_3g070110 47.059 85 34 2 136 213 97 177 2.00e-13 68.6
MS.gene93682.t1 MTR_1g083180 52.113 71 29 2 136 202 63 132 6.13e-13 66.6
MS.gene93682.t1 MTR_5g020540 49.206 63 31 1 27 89 2 63 7.85e-13 62.8
MS.gene93682.t1 MTR_8g072990 44.068 59 33 0 122 180 88 146 5.63e-11 62.0
MS.gene93682.t1 MTR_6g043480 44.828 58 32 0 123 180 96 153 6.60e-11 61.6
MS.gene93682.t1 MTR_6g043490 44.828 58 32 0 123 180 96 153 7.12e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93682.t1 AT2G38090 74.178 213 48 2 1 206 1 213 4.28e-117 339
MS.gene93682.t1 AT5G58900 64.651 215 59 5 5 205 1 212 7.16e-91 272
MS.gene93682.t1 AT5G01200 54.762 252 84 7 1 231 6 248 2.23e-82 250
MS.gene93682.t1 AT3G11280 57.339 218 74 4 5 214 1 207 3.85e-76 234
MS.gene93682.t1 AT3G11280 57.339 218 74 4 5 214 1 207 3.85e-76 234
MS.gene93682.t1 AT5G05790 58.128 203 75 3 27 229 29 221 5.52e-74 229
MS.gene93682.t1 AT5G05790 58.128 203 75 3 27 229 29 221 5.52e-74 229
MS.gene93682.t1 AT5G08520 50.000 188 91 2 24 209 7 193 1.42e-54 179
MS.gene93682.t1 AT1G49010 48.500 200 80 4 27 204 6 204 7.23e-50 168
MS.gene93682.t1 AT5G04760 48.295 176 79 3 27 202 4 167 2.75e-47 158
MS.gene93682.t1 AT5G23650 45.304 181 91 3 26 201 10 187 2.80e-44 154
MS.gene93682.t1 AT3G10580 38.378 185 92 4 32 215 11 174 2.61e-33 123
MS.gene93682.t1 AT3G10580 38.378 185 92 4 32 215 11 174 5.15e-33 123
MS.gene93682.t1 AT5G47390 76.712 73 17 0 126 198 88 160 8.85e-32 122
MS.gene93682.t1 AT5G61620 52.632 114 47 1 105 218 86 192 3.37e-30 116
MS.gene93682.t1 AT5G56840 64.557 79 26 2 129 205 86 164 2.67e-27 107
MS.gene93682.t1 AT4G09450 36.898 187 94 4 28 211 6 171 1.06e-26 104
MS.gene93682.t1 AT1G70000 72.222 72 20 0 128 199 92 163 1.48e-26 105
MS.gene93682.t1 AT1G70000 72.222 72 20 0 128 199 92 163 1.48e-26 105
MS.gene93682.t1 AT3G16350 84.906 53 8 0 129 181 132 184 1.92e-25 105
MS.gene93682.t1 AT1G19000 54.000 100 44 1 130 227 98 197 1.48e-24 100
MS.gene93682.t1 AT1G19000 54.000 100 44 1 130 227 98 197 1.48e-24 100
MS.gene93682.t1 AT1G74840 56.566 99 35 2 129 219 91 189 1.29e-23 97.1
MS.gene93682.t1 AT1G74840 80.769 52 10 0 129 180 91 142 2.03e-23 97.4
MS.gene93682.t1 AT3G10590 35.795 176 105 6 28 200 6 176 9.78e-20 85.9
MS.gene93682.t1 AT1G75250 53.731 67 31 0 27 93 10 76 3.94e-17 75.9
MS.gene93682.t1 AT1G75250 53.731 67 31 0 27 93 10 76 1.08e-16 75.5
MS.gene93682.t1 AT4G39250 48.485 66 34 0 29 94 14 79 2.08e-15 71.2
MS.gene93682.t1 AT1G19510 44.872 78 40 1 32 109 15 89 4.62e-14 67.4
MS.gene93682.t1 AT2G21650 47.761 67 35 0 29 95 14 80 5.35e-14 67.4
MS.gene93682.t1 AT2G18328 46.032 63 34 0 33 95 15 77 8.31e-12 60.5

Find 69 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACAACCAATTGGAATTT+TGG 0.118121 7.1:+34404454 None:intergenic
TATTTCATTAGGCAGCTTTC+AGG 0.241192 7.1:-34403162 MS.gene93682:CDS
AGGGTTGCTGAGATGATTCC+TGG 0.340116 7.1:-34404336 MS.gene93682:CDS
GCTGGTTTGATTCCAGTTCC+TGG 0.356650 7.1:-34404249 MS.gene93682:CDS
AAAAGTATGGCAAGGGAGAC+TGG 0.370917 7.1:-34403251 MS.gene93682:CDS
TGCTTTGGCTTATTATGATA+AGG 0.376321 7.1:-34404379 MS.gene93682:CDS
ATGCTCAGAAGTATTTCATT+AGG 0.387800 7.1:-34403173 MS.gene93682:CDS
CACTGTGATATCATGGATAC+TGG 0.389987 7.1:+34403119 None:intergenic
TTAGTTGAATTGAAAACAAA+TGG 0.411456 7.1:+34402946 None:intergenic
CCTATATCCAAAATTCCAAT+TGG 0.417676 7.1:-34404461 MS.gene93682:CDS
TGATGTGATTAAACAGTATA+GGG 0.417708 7.1:-34404301 MS.gene93682:CDS
TAGTATCAAAAGGTGAAAAC+TGG 0.419071 7.1:+34402830 None:intergenic
GCAACCCTTATCCATCTATC+AGG 0.422928 7.1:+34404351 None:intergenic
TAAGCTCTTTGAGAATGCTT+TGG 0.425147 7.1:-34404394 MS.gene93682:CDS
ATAAGGATACTCCTGATAGA+TGG 0.435285 7.1:-34404362 MS.gene93682:CDS
CAGTCCTTCTCCGGACCATT+TGG 0.439544 7.1:-34403055 MS.gene93682:CDS
TTCGACTCGGCCGTCGGAGC+AGG 0.440395 7.1:-34404133 MS.gene93682:CDS
ACAAATGGCATGCCTTCATC+TGG 0.446288 7.1:+34402961 None:intergenic
TTTGTCCAGCATGGTTAAGC+AGG 0.451543 7.1:-34403001 MS.gene93682:CDS
GATGTGTGTGTTATTGAAGC+TGG 0.457311 7.1:-34404267 MS.gene93682:CDS
CTAGTTGTATAACCAGGAAC+TGG 0.466044 7.1:+34404237 None:intergenic
GATTCGCAACCTTCACCAAA+TGG 0.477753 7.1:+34403040 None:intergenic
ATACTCCTGATAGATGGATA+AGG 0.478456 7.1:-34404356 MS.gene93682:CDS
GTGATGTGATTAAACAGTAT+AGG 0.483162 7.1:-34404302 MS.gene93682:CDS
GACTGGAAATTACCAGATGA+AGG 0.483800 7.1:-34402973 MS.gene93682:CDS
TACTCCTGATAGATGGATAA+GGG 0.485001 7.1:-34404355 MS.gene93682:CDS
TTCTTCCTTTCCTGCTCCGA+CGG 0.488987 7.1:+34404123 None:intergenic
AGACAGTAACAGTCCTTCTC+CGG 0.498079 7.1:-34403064 MS.gene93682:CDS
TTCACACGAATCAAAATCAC+CGG 0.499801 7.1:-34402887 MS.gene93682:CDS
TTTCAGGAGGGAAAGATAAG+AGG 0.511168 7.1:-34403146 MS.gene93682:CDS
ATTTGCAAAATAGTATCAAA+AGG 0.512642 7.1:+34402820 None:intergenic
TTCTCCGGACCATTTGGTGA+AGG 0.512861 7.1:-34403049 MS.gene93682:CDS
CTCGGCCGTCGGAGCAGGAA+AGG 0.514515 7.1:-34404128 MS.gene93682:CDS
CTATGCTCCTCTTCAGTCCA+TGG 0.515244 7.1:+34404093 None:intergenic
GATTGACCACTGTGATATCA+TGG 0.524764 7.1:+34403112 None:intergenic
AACTAAAGGAAACATGTTTG+TGG 0.525249 7.1:-34402929 MS.gene93682:CDS
TGGTTAAGCAGGAATTTGAC+TGG 0.530767 7.1:-34402990 MS.gene93682:CDS
AAATTCCTGCTTAACCATGC+TGG 0.533010 7.1:+34402996 None:intergenic
GCAACCTTCACCAAATGGTC+CGG 0.536679 7.1:+34403045 None:intergenic
GCATGACTTGCGACTTGAGT+TGG 0.545637 7.1:+34403192 None:intergenic
GAATCATAATTTGTCCAGCA+TGG 0.552113 7.1:-34403010 MS.gene93682:CDS
GGTATCCGTGATGAGTGCTT+CGG 0.561659 7.1:+34402851 None:intergenic
TTCATTAGGCAGCTTTCAGG+AGG 0.562103 7.1:-34403159 MS.gene93682:CDS
ATGTTTGTGGCACCGTCGTG+CGG 0.567658 7.1:-34402916 MS.gene93682:CDS
TGTTTGTGGCACCGTCGTGC+GGG 0.575136 7.1:-34402915 MS.gene93682:CDS
TTATCTAGAACAATGAATAG+AGG 0.579227 7.1:-34404507 None:intergenic
GAGACTGGAGAAACATCTCT+AGG 0.579618 7.1:-34403236 MS.gene93682:CDS
AAGTGGTTCGACTCGGCCGT+CGG 0.583732 7.1:-34404139 MS.gene93682:CDS
TCGGAGCAGGAAAGGAAGAA+AGG 0.584815 7.1:-34404120 MS.gene93682:CDS
TTCACCAAATGGTCCGGAGA+AGG 0.587958 7.1:+34403051 None:intergenic
GACTTGAGTTGGTGTTCTTG+TGG 0.595027 7.1:+34403203 None:intergenic
TTGGATTGGGATAACAGTGA+AGG 0.598870 7.1:-34404204 MS.gene93682:CDS
AAAGGAAGAAAGGTGTGCCA+TGG 0.605391 7.1:-34404110 MS.gene93682:CDS
CATGGACTGAAGAGGAGCAT+AGG 0.606328 7.1:-34404092 MS.gene93682:intron
TGGATTGGGATAACAGTGAA+GGG 0.609140 7.1:-34404203 MS.gene93682:CDS
GGACTGTTACTGTCTGATGA+TGG 0.610056 7.1:+34403072 None:intergenic
AGGTGTGCCATGGACTGAAG+AGG 0.618331 7.1:-34404100 MS.gene93682:CDS
TCATTAGGCAGCTTTCAGGA+GGG 0.624684 7.1:-34403158 MS.gene93682:CDS
TCACACGAATCAAAATCACC+GGG 0.624989 7.1:-34402886 MS.gene93682:CDS
GGAAAAGAAGTGGTTCGACT+CGG 0.625707 7.1:-34404146 MS.gene93682:CDS
AGTGTTGGTGGGAAAAGAAG+TGG 0.631430 7.1:-34404156 MS.gene93682:CDS
AAAGAGCTAGTTGTATAACC+AGG 0.644968 7.1:+34404231 None:intergenic
CTTCGGAGTACATTACGCCC+CGG 0.658628 7.1:+34402868 None:intergenic
TGGTTGTTTCAAGAAAACAA+TGG 0.668637 7.1:-34404441 MS.gene93682:CDS
CTGGACAAATTATGATTCTG+CGG 0.674859 7.1:+34403015 None:intergenic
GTACTCCGAAGCACTCATCA+CGG 0.696294 7.1:-34402856 MS.gene93682:CDS
TGTGAAGAAATCCCGCACGA+CGG 0.722769 7.1:+34402904 None:intergenic
CAGTATCCATGATATCACAG+TGG 0.783772 7.1:-34403118 MS.gene93682:CDS
CACACGAATCAAAATCACCG+GGG 0.804905 7.1:-34402885 MS.gene93682:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTATTAATGTTTGAAAA+TGG - chr7.1:34403768-34403787 MS.gene93682:intron 15.0%
!! ACTAAACCAAAGAATTAATA+CGG + chr7.1:34403400-34403419 None:intergenic 20.0%
!! ATTTGCAAAATAGTATCAAA+AGG + chr7.1:34404476-34404495 None:intergenic 20.0%
!! GTGTTACATAGATTATTATA+TGG - chr7.1:34403876-34403895 MS.gene93682:intron 20.0%
!! TATAATAATCTATGTAACAC+CGG + chr7.1:34403876-34403895 None:intergenic 20.0%
!! TATGGTAGATTAACATAAAA+AGG + chr7.1:34404001-34404020 None:intergenic 20.0%
!! TTAGTGAAATTATAGTTGTT+AGG - chr7.1:34403324-34403343 MS.gene93682:intron 20.0%
!! TTAGTTGAATTGAAAACAAA+TGG + chr7.1:34404350-34404369 None:intergenic 20.0%
!!! GATTTTTTGCTTTAAAACTA+TGG - chr7.1:34403649-34403668 MS.gene93682:intron 20.0%
!!! TTTGTTTTCAATTCAACTAA+AGG - chr7.1:34404350-34404369 MS.gene93682:CDS 20.0%
!!! TTTTTATGTTAATCTACCAT+AGG - chr7.1:34404000-34404019 MS.gene93682:intron 20.0%
! TAATTAAAGCACATGATTGA+AGG - chr7.1:34403440-34403459 MS.gene93682:intron 25.0%
! TGATGTGATTAAACAGTATA+GGG - chr7.1:34402992-34403011 MS.gene93682:CDS 25.0%
! TGTTTGAGTGATTATAAATC+AGG - chr7.1:34403682-34403701 MS.gene93682:intron 25.0%
! TTGAATGTAACTACATGTTT+CGG - chr7.1:34403797-34403816 MS.gene93682:intron 25.0%
AACTAAAGGAAACATGTTTG+TGG - chr7.1:34404364-34404383 MS.gene93682:CDS 30.0%
ATGATTTGAATAGTCGAAGA+AGG - chr7.1:34403567-34403586 MS.gene93682:intron 30.0%
CCTATATCCAAAATTCCAAT+TGG - chr7.1:34402832-34402851 MS.gene93682:CDS 30.0%
GTGATGTGATTAAACAGTAT+AGG - chr7.1:34402991-34403010 MS.gene93682:CDS 30.0%
TAGTATCAAAAGGTGAAAAC+TGG + chr7.1:34404466-34404485 None:intergenic 30.0%
TGTGATTCCATACTCTAAAT+CGG - chr7.1:34403525-34403544 MS.gene93682:intron 30.0%
TTGATAAATGCTTTACCTGT+TGG - chr7.1:34403906-34403925 MS.gene93682:intron 30.0%
TTGTTGGGTCTTAAAAAGTA+TGG - chr7.1:34404029-34404048 MS.gene93682:intron 30.0%
! AACAGGTAAAGCATTTATCA+AGG + chr7.1:34403907-34403926 None:intergenic 30.0%
! CCAATTGGAATTTTGGATAT+AGG + chr7.1:34402835-34402854 None:intergenic 30.0%
! GAAACAACCAATTGGAATTT+TGG + chr7.1:34402842-34402861 None:intergenic 30.0%
! GTTTTCTTGAAACAACCAAT+TGG + chr7.1:34402850-34402869 None:intergenic 30.0%
! TACCATAGGCAATTTTTGTT+GGG - chr7.1:34404014-34404033 MS.gene93682:intron 30.0%
! TAGCTCTTTTACATTGGATT+GGG - chr7.1:34403076-34403095 MS.gene93682:CDS 30.0%
! TGCTTTGGCTTATTATGATA+AGG - chr7.1:34402914-34402933 MS.gene93682:CDS 30.0%
! TGGTTGTTTCAAGAAAACAA+TGG - chr7.1:34402852-34402871 MS.gene93682:CDS 30.0%
!! ATGATGGCAATTTTGTTTCT+TGG + chr7.1:34404208-34404227 None:intergenic 30.0%
!! ATGCTCAGAAGTATTTCATT+AGG - chr7.1:34404120-34404139 MS.gene93682:CDS 30.0%
!! TACAACTAGCTCTTTTACAT+TGG - chr7.1:34403070-34403089 MS.gene93682:CDS 30.0%
AAAGAGCTAGTTGTATAACC+AGG + chr7.1:34403065-34403084 None:intergenic 35.0%
AGAGTCAGATATCAAATGCA+AGG + chr7.1:34403934-34403953 None:intergenic 35.0%
ATAAGGATACTCCTGATAGA+TGG - chr7.1:34402931-34402950 MS.gene93682:CDS 35.0%
ATACTCCTGATAGATGGATA+AGG - chr7.1:34402937-34402956 MS.gene93682:CDS 35.0%
ATGATTCCTGGAAAAACTGT+TGG - chr7.1:34402969-34402988 MS.gene93682:CDS 35.0%
CATCAGCCGTATTAATTCTT+TGG - chr7.1:34403391-34403410 MS.gene93682:intron 35.0%
CTGGACAAATTATGATTCTG+CGG + chr7.1:34404281-34404300 None:intergenic 35.0%
TACTCCTGATAGATGGATAA+GGG - chr7.1:34402938-34402957 MS.gene93682:CDS 35.0%
TATTTCATTAGGCAGCTTTC+AGG - chr7.1:34404131-34404150 MS.gene93682:CDS 35.0%
TTCACACGAATCAAAATCAC+CGG - chr7.1:34404406-34404425 MS.gene93682:CDS 35.0%
! CTACCATAGGCAATTTTTGT+TGG - chr7.1:34404013-34404032 MS.gene93682:intron 35.0%
! GAATCATAATTTGTCCAGCA+TGG - chr7.1:34404283-34404302 MS.gene93682:CDS 35.0%
! GAATTTTGGATATAGGAAGC+TGG + chr7.1:34402828-34402847 None:intergenic 35.0%
! GGTCTTAAAAAGTATGGCAA+GGG - chr7.1:34404035-34404054 MS.gene93682:intron 35.0%
! TAAGCTCTTTGAGAATGCTT+TGG - chr7.1:34402899-34402918 MS.gene93682:CDS 35.0%
!! ATCCAGTGTTTTTGCTTCTT+TGG - chr7.1:34403958-34403977 MS.gene93682:intron 35.0%
!! CTAGCTCTTTTACATTGGAT+TGG - chr7.1:34403075-34403094 MS.gene93682:CDS 35.0%
!! TTCAAGCAGTTTTGTAGTGT+TGG - chr7.1:34403122-34403141 MS.gene93682:CDS 35.0%
AAATTCCTGCTTAACCATGC+TGG + chr7.1:34404300-34404319 None:intergenic 40.0%
AGCCAAAGAAGCAAAAACAC+TGG + chr7.1:34403963-34403982 None:intergenic 40.0%
ATCAAATGCAAGGAACCAAC+AGG + chr7.1:34403924-34403943 None:intergenic 40.0%
CACTGTGATATCATGGATAC+TGG + chr7.1:34404177-34404196 None:intergenic 40.0%
CAGTATCCATGATATCACAG+TGG - chr7.1:34404175-34404194 MS.gene93682:CDS 40.0%
CTAGTTGTATAACCAGGAAC+TGG + chr7.1:34403059-34403078 None:intergenic 40.0%
GACCCAACAAAAATTGCCTA+TGG + chr7.1:34404019-34404038 None:intergenic 40.0%
GACTGGAAATTACCAGATGA+AGG - chr7.1:34404320-34404339 MS.gene93682:CDS 40.0%
GATTGACCACTGTGATATCA+TGG + chr7.1:34404184-34404203 None:intergenic 40.0%
GTCGAAGAAGGAAGAATCAT+TGG - chr7.1:34403579-34403598 MS.gene93682:intron 40.0%
TACATGTTTCGGTTTCGTGT+CGG - chr7.1:34403808-34403827 MS.gene93682:intron 40.0%
TCACACGAATCAAAATCACC+GGG - chr7.1:34404407-34404426 MS.gene93682:CDS 40.0%
TGGTTAAGCAGGAATTTGAC+TGG - chr7.1:34404303-34404322 MS.gene93682:CDS 40.0%
TTTCAGGAGGGAAAGATAAG+AGG - chr7.1:34404147-34404166 MS.gene93682:CDS 40.0%
! ACATCACCAACAGTTTTTCC+AGG + chr7.1:34402978-34402997 None:intergenic 40.0%
! GATGTGTGTGTTATTGAAGC+TGG - chr7.1:34403026-34403045 MS.gene93682:CDS 40.0%
! GGGTCTTAAAAAGTATGGCA+AGG - chr7.1:34404034-34404053 MS.gene93682:intron 40.0%
! TGGATTGGGATAACAGTGAA+GGG - chr7.1:34403090-34403109 MS.gene93682:CDS 40.0%
! TTGGATTGGGATAACAGTGA+AGG - chr7.1:34403089-34403108 MS.gene93682:CDS 40.0%
!! AAGCAGTTTTGTAGTGTTGG+TGG - chr7.1:34403125-34403144 MS.gene93682:CDS 40.0%
!! TGAATCGCCGATTTAGAGTA+TGG + chr7.1:34403535-34403554 None:intergenic 40.0%
!!! AGCAGTTTTGTAGTGTTGGT+GGG - chr7.1:34403126-34403145 MS.gene93682:CDS 40.0%
ACAAATGGCATGCCTTCATC+TGG + chr7.1:34404335-34404354 None:intergenic 45.0%
AGACAGTAACAGTCCTTCTC+CGG - chr7.1:34404229-34404248 MS.gene93682:CDS 45.0%
CACACGAATCAAAATCACCG+GGG - chr7.1:34404408-34404427 MS.gene93682:CDS 45.0%
GAAGAATCATTGGCATGCTG+AGG - chr7.1:34403589-34403608 MS.gene93682:intron 45.0%
GAGACTGGAGAAACATCTCT+AGG - chr7.1:34404057-34404076 MS.gene93682:intron 45.0%
GATTCGCAACCTTCACCAAA+TGG + chr7.1:34404256-34404275 None:intergenic 45.0%
GCAACCCTTATCCATCTATC+AGG + chr7.1:34402945-34402964 None:intergenic 45.0%
GGAAAAGAAGTGGTTCGACT+CGG - chr7.1:34403147-34403166 MS.gene93682:CDS 45.0%
GGACTGTTACTGTCTGATGA+TGG + chr7.1:34404224-34404243 None:intergenic 45.0%
TCAGTCTAAACTCTGACGTC+CGG - chr7.1:34403854-34403873 MS.gene93682:intron 45.0%
TCATTAGGCAGCTTTCAGGA+GGG - chr7.1:34404135-34404154 MS.gene93682:CDS 45.0%
TTCATTAGGCAGCTTTCAGG+AGG - chr7.1:34404134-34404153 MS.gene93682:CDS 45.0%
TTTGTCCAGCATGGTTAAGC+AGG - chr7.1:34404292-34404311 MS.gene93682:CDS 45.0%
! AAAAGTATGGCAAGGGAGAC+TGG - chr7.1:34404042-34404061 MS.gene93682:intron 45.0%
! AAAGGAAGAAAGGTGTGCCA+TGG - chr7.1:34403183-34403202 MS.gene93682:CDS 45.0%
!! AGTGTTGGTGGGAAAAGAAG+TGG - chr7.1:34403137-34403156 MS.gene93682:CDS 45.0%
!! GACTTGAGTTGGTGTTCTTG+TGG + chr7.1:34404093-34404112 None:intergenic 45.0%
AGGGTTGCTGAGATGATTCC+TGG - chr7.1:34402957-34402976 MS.gene93682:CDS 50.0%
CTATGCTCCTCTTCAGTCCA+TGG + chr7.1:34403203-34403222 None:intergenic 50.0%
GAATCATTGGCATGCTGAGG+TGG - chr7.1:34403592-34403611 MS.gene93682:intron 50.0%
GCAACCTTCACCAAATGGTC+CGG + chr7.1:34404251-34404270 None:intergenic 50.0%
GGTATCCGTGATGAGTGCTT+CGG + chr7.1:34404445-34404464 None:intergenic 50.0%
GTGTCTGTGAGTGTCATGTC+TGG + chr7.1:34403749-34403768 None:intergenic 50.0%
TCGGAGCAGGAAAGGAAGAA+AGG - chr7.1:34403173-34403192 MS.gene93682:CDS 50.0%
TGTGAAGAAATCCCGCACGA+CGG + chr7.1:34404392-34404411 None:intergenic 50.0%
TTCACCAAATGGTCCGGAGA+AGG + chr7.1:34404245-34404264 None:intergenic 50.0%
TTCTTCCTTTCCTGCTCCGA+CGG + chr7.1:34403173-34403192 None:intergenic 50.0%
! CATGGACTGAAGAGGAGCAT+AGG - chr7.1:34403201-34403220 MS.gene93682:CDS 50.0%
! GCATGACTTGCGACTTGAGT+TGG + chr7.1:34404104-34404123 None:intergenic 50.0%
! GTACTCCGAAGCACTCATCA+CGG - chr7.1:34404437-34404456 MS.gene93682:CDS 50.0%
! TTCTCCGGACCATTTGGTGA+AGG - chr7.1:34404244-34404263 MS.gene93682:CDS 50.0%
!! GCTGGTTTGATTCCAGTTCC+TGG - chr7.1:34403044-34403063 MS.gene93682:CDS 50.0%
ATGTTTGTGGCACCGTCGTG+CGG - chr7.1:34404377-34404396 MS.gene93682:CDS 55.0%
CAGTCCTTCTCCGGACCATT+TGG - chr7.1:34404238-34404257 MS.gene93682:CDS 55.0%
CTTCGGAGTACATTACGCCC+CGG + chr7.1:34404428-34404447 None:intergenic 55.0%
! AGGTGTGCCATGGACTGAAG+AGG - chr7.1:34403193-34403212 MS.gene93682:CDS 55.0%
TGTTTGTGGCACCGTCGTGC+GGG - chr7.1:34404378-34404397 MS.gene93682:CDS 60.0%
!! AAGTGGTTCGACTCGGCCGT+CGG - chr7.1:34403154-34403173 MS.gene93682:CDS 60.0%
CTCGGCCGTCGGAGCAGGAA+AGG - chr7.1:34403165-34403184 MS.gene93682:CDS 70.0%
!! TTCGACTCGGCCGTCGGAGC+AGG - chr7.1:34403160-34403179 MS.gene93682:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 34402798 34404517 34402798 ID=MS.gene93682
chr7.1 mRNA 34402798 34404517 34402798 ID=MS.gene93682.t1;Parent=MS.gene93682
chr7.1 exon 34404093 34404517 34404093 ID=MS.gene93682.t1.exon1;Parent=MS.gene93682.t1
chr7.1 CDS 34404093 34404517 34404093 ID=cds.MS.gene93682.t1;Parent=MS.gene93682.t1
chr7.1 exon 34402798 34403293 34402798 ID=MS.gene93682.t1.exon2;Parent=MS.gene93682.t1
chr7.1 CDS 34402798 34403293 34402798 ID=cds.MS.gene93682.t1;Parent=MS.gene93682.t1
Gene Sequence

>MS.gene93682

ATGAATAGAGGAGTTGAAGTTCTATCACCAGCTTCCTATATCCAAAATTCCAATTGGTTGTTTCAAGAAAACAATGGTTCAAAATTTACTTCAGAAGAGAATAAGCTCTTTGAGAATGCTTTGGCTTATTATGATAAGGATACTCCTGATAGATGGATAAGGGTTGCTGAGATGATTCCTGGAAAAACTGTTGGTGATGTGATTAAACAGTATAGGGAGCTTGAAGAAGATGTGTGTGTTATTGAAGCTGGTTTGATTCCAGTTCCTGGTTATACAACTAGCTCTTTTACATTGGATTGGGATAACAGTGAAGGGTATGATGAGTTCAAGCAGTTTTGTAGTGTTGGTGGGAAAAGAAGTGGTTCGACTCGGCCGTCGGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAGCATAGGTAAATTACATATCAGAAATTCTTTTTTGATTTGTTTAGTATGTATGATGTGCATTAATTTAGATTAAAGTTGAGATTTATGTTGTGAATAATCATTTTAGTTAGTGAAATTATAGTTGTTAGGCAATTTTGTGCTTGAAATGATTCATGAACTTGAAAATCATCATTCATCAGCCGTATTAATTCTTTGGTTTAGTCAATTTAGTTTTTGAAATTGTAATTAAAGCACATGATTGAAGGTTTTTAATTTTAGACATTATTTTGAAATTTCATTGATTTTAGTGATCAAAGTTCTTTTCTCTTGTGATTCCATACTCTAAATCGGCGATTCACTCAATTTATCGATGATTTGAATAGTCGAAGAAGGAAGAATCATTGGCATGCTGAGGTGGTAAAGAAACATTGTTGATAAGATGTTTCTTTTAAGATTTTTTGCTTTAAAACTATGGAAAGTTAATTTGTTTGAGTGATTATAAATCAGGTTGTGTTTAATTATTATCTATGAAGCACTGATACAGACACACCAGACATGACACTCACAGACACAATTATTAATGTTTGAAAATGGAAATGATTGAATGTAACTACATGTTTCGGTTTCGTGTCGGCGTTTGATGAGACACACACGCTTTCAGTCTAAACTCTGACGTCCGGTGTTACATAGATTATTATATGGTTTTGCCTTGATAAATGCTTTACCTGTTGGTTCCTTGCATTTGATATCTGACTCTAATAATCCAGTGTTTTTGCTTCTTTGGCTATTTTATTAATAGAACCTTTTTATGTTAATCTACCATAGGCAATTTTTGTTGGGTCTTAAAAAGTATGGCAAGGGAGACTGGAGAAACATCTCTAGGAATTTTGTGACCACAAGAACACCAACTCAAGTCGCAAGTCATGCTCAGAAGTATTTCATTAGGCAGCTTTCAGGAGGGAAAGATAAGAGGAGATCCAGTATCCATGATATCACAGTGGTCAATCTCCAAGAAACAAAATTGCCATCATCAGACAGTAACAGTCCTTCTCCGGACCATTTGGTGAAGGTTGCGAATCAACCGCAGAATCATAATTTGTCCAGCATGGTTAAGCAGGAATTTGACTGGAAATTACCAGATGAAGGCATGCCATTTGTTTTCAATTCAACTAAAGGAAACATGTTTGTGGCACCGTCGTGCGGGATTTCTTCACACGAATCAAAATCACCGGGGCGTAATGTACTCCGAAGCACTCATCACGGATACCAGTTTTCACCTTTTGATACTATTTTGCAAATGCAATCTATGCAGCATCAATGA
Protein sequence

>MS.gene93682.t1

MNRGVEVLSPASYIQNSNWLFQENNGSKFTSEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWDNSEGYDEFKQFCSVGGKRSGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITVVNLQETKLPSSDSNSPSPDHLVKVANQPQNHNLSSMVKQEFDWKLPDEGMPFVFNSTKGNMFVAPSCGISSHESKSPGRNVLRSTHHGYQFSPFDTILQMQSMQHQ