Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058121.t1 | XP_003610866.2 | 97.8 | 312 | 7 | 0 | 1 | 312 | 1 | 312 | 1.10E-121 | 446.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058121.t1 | Q5M882 | 38.0 | 100 | 58 | 2 | 213 | 308 | 105 | 204 | 2.6e-12 | 74.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058121.t1 | G7K6I6 | 97.8 | 312 | 7 | 0 | 1 | 312 | 1 | 312 | 7.7e-122 | 446.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05906 | MS.gene058121 | PPI |
| MS.gene04750 | MS.gene058121 | PPI |
| MS.gene049112 | MS.gene058121 | PPI |
| MS.gene058121 | MS.gene015759 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058121.t1 | MTR_5g007880 | 97.436 | 312 | 8 | 0 | 1 | 312 | 1 | 312 | 0.0 | 630 |
| MS.gene058121.t1 | MTR_5g007880 | 97.500 | 280 | 7 | 0 | 1 | 280 | 1 | 280 | 0.0 | 565 |
| MS.gene058121.t1 | MTR_5g014220 | 74.359 | 39 | 10 | 0 | 115 | 153 | 43 | 81 | 5.47e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058121.t1 | AT2G43190 | 55.128 | 234 | 100 | 2 | 75 | 308 | 62 | 290 | 3.41e-86 | 261 |
| MS.gene058121.t1 | AT2G43190 | 55.128 | 234 | 100 | 2 | 75 | 308 | 62 | 290 | 3.41e-86 | 261 |
| MS.gene058121.t1 | AT2G43190 | 58.333 | 216 | 89 | 1 | 93 | 308 | 75 | 289 | 1.42e-85 | 259 |
| MS.gene058121.t1 | AT2G43190 | 58.333 | 216 | 89 | 1 | 93 | 308 | 75 | 289 | 1.42e-85 | 259 |
| MS.gene058121.t1 | AT2G43190 | 44.444 | 234 | 90 | 2 | 75 | 308 | 62 | 255 | 1.01e-58 | 189 |
Find 54 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGAAACTGCAGAAGCTTT+TGG | 0.202603 | 5.4:-3140907 | MS.gene058121:CDS |
| TGCCACCAGTTCCAGTAAAA+TGG | 0.225932 | 5.4:+3140938 | None:intergenic |
| GAAAATCTGCTCACAACTAA+TGG | 0.271857 | 5.4:-3142727 | MS.gene058121:CDS |
| TAAATTTGAATTACCTTTGT+TGG | 0.343920 | 5.4:+3143637 | None:intergenic |
| ACTTACTTATGGAACTCTTT+AGG | 0.344380 | 5.4:+3142312 | None:intergenic |
| AAGAAGTTCATGCAATATTT+CGG | 0.347349 | 5.4:+3142533 | None:intergenic |
| AAAATCTGCTCACAACTAAT+GGG | 0.354040 | 5.4:-3142726 | MS.gene058121:CDS |
| TTGTACTACAAGTTGATTGC+TGG | 0.357928 | 5.4:-3139863 | MS.gene058121:CDS |
| ACAGAAAGTTGGGCATATTC+TGG | 0.385740 | 5.4:+3142760 | None:intergenic |
| GAAACGTGCAATGGAGGCTT+TGG | 0.387822 | 5.4:-3143846 | MS.gene058121:CDS |
| TCGGATGATGGACGACATAA+AGG | 0.400815 | 5.4:+3143665 | None:intergenic |
| AAATTTGAATTACCTTTGTT+GGG | 0.407924 | 5.4:+3143638 | None:intergenic |
| CATTTACAGTCACAGAAAGT+TGG | 0.409130 | 5.4:+3142749 | None:intergenic |
| AAACTAGATTCAAGAAAGGT+TGG | 0.424013 | 5.4:-3139819 | MS.gene058121:CDS |
| ATTTACAGTCACAGAAAGTT+GGG | 0.425288 | 5.4:+3142750 | None:intergenic |
| CAGTACAGTACCTTGTGAAA+TGG | 0.436121 | 5.4:+3142927 | None:intergenic |
| TGCTGGAAAGCCACTCTGCT+TGG | 0.452437 | 5.4:-3139846 | MS.gene058121:CDS |
| TTGTTCCAGGAATAATCAAT+TGG | 0.458394 | 5.4:-3141860 | MS.gene058121:intron |
| AAGTTGTTGCTTAAATCCAC+TGG | 0.460350 | 5.4:-3141994 | MS.gene058121:CDS |
| GCCACCAGTTCCAGTAAAAT+GGG | 0.464672 | 5.4:+3140939 | None:intergenic |
| AATTGCAGTTGTTCCGAAGA+AGG | 0.466042 | 5.4:-3139895 | MS.gene058121:intron |
| TATCAATGGCTGCTGAATCA+AGG | 0.478212 | 5.4:-3143868 | None:intergenic |
| TTCTTCATCTTCTCAAACAA+GGG | 0.478707 | 5.4:-3142412 | MS.gene058121:CDS |
| ACAAATACAGAACCCTTCTT+CGG | 0.485262 | 5.4:+3139882 | None:intergenic |
| CAATTGGCTCAATGTCTCCT+AGG | 0.493446 | 5.4:-3141844 | MS.gene058121:CDS |
| ATTACCTTTGTTGGGTGTAT+CGG | 0.513719 | 5.4:+3143646 | None:intergenic |
| TCTTTCCACATGTCATGCAT+TGG | 0.514242 | 5.4:+3142024 | None:intergenic |
| TTGTTGGGTGTATCGGATGA+TGG | 0.531290 | 5.4:+3143653 | None:intergenic |
| ATTGCATGAACTTCTTCAGA+AGG | 0.532906 | 5.4:-3142526 | MS.gene058121:CDS |
| ATTGCAGTTGTTCCGAAGAA+GGG | 0.549801 | 5.4:-3139894 | MS.gene058121:intron |
| CTTGCACAAAATTATCAAGA+AGG | 0.550602 | 5.4:+3142445 | None:intergenic |
| TCATTAGAAGTAGAGGGTGG+TGG | 0.559781 | 5.4:+3143698 | None:intergenic |
| AGATAAACTAGATTCAAGAA+AGG | 0.561327 | 5.4:-3139823 | MS.gene058121:CDS |
| TTTCTTCATCTTCTCAAACA+AGG | 0.563095 | 5.4:-3142413 | MS.gene058121:CDS |
| TTTGGTCGTGCCATTTCACA+AGG | 0.566627 | 5.4:-3142937 | MS.gene058121:intron |
| CTCCTAGGTGCAGATCTACA+TGG | 0.569680 | 5.4:-3141829 | MS.gene058121:CDS |
| GGACGGATCATTAGAAGTAG+AGG | 0.570525 | 5.4:+3143691 | None:intergenic |
| ATCAAGGAAACGTGCAATGG+AGG | 0.577785 | 5.4:-3143852 | MS.gene058121:CDS |
| TAATCTGTAGAGAAAGAAGA+TGG | 0.577837 | 5.4:-3142784 | MS.gene058121:intron |
| TTGCATGAACTTCTTCAGAA+GGG | 0.595042 | 5.4:-3142525 | MS.gene058121:CDS |
| AGTTGTTGCTTAAATCCACT+GGG | 0.610453 | 5.4:-3141993 | MS.gene058121:intron |
| TCAAGCCAATGCATGACATG+TGG | 0.623887 | 5.4:-3142029 | MS.gene058121:CDS |
| GGACGACATAAAGGCAAGGA+CGG | 0.625054 | 5.4:+3143674 | None:intergenic |
| ACTGAAGATAATAAATTCCG+AGG | 0.626423 | 5.4:-3140877 | MS.gene058121:intron |
| GACGGATCATTAGAAGTAGA+GGG | 0.632740 | 5.4:+3143692 | None:intergenic |
| GCAGCACAAAAGTACATGCA+AGG | 0.640542 | 5.4:-3142498 | MS.gene058121:CDS |
| TCTGCTCACAACTAATGGGG+AGG | 0.647144 | 5.4:-3142722 | MS.gene058121:intron |
| TGAATCAAGGAAACGTGCAA+TGG | 0.657298 | 5.4:-3143855 | MS.gene058121:CDS |
| AAATCTGCTCACAACTAATG+GGG | 0.672764 | 5.4:-3142725 | MS.gene058121:CDS |
| TAGTTTATCTCCAAGCAGAG+TGG | 0.678445 | 5.4:+3139836 | None:intergenic |
| TGATGGACGACATAAAGGCA+AGG | 0.683011 | 5.4:+3143670 | None:intergenic |
| TCATCCGATACACCCAACAA+AGG | 0.686196 | 5.4:-3143650 | MS.gene058121:intron |
| CACCATGTAGATCTGCACCT+AGG | 0.706017 | 5.4:+3141827 | None:intergenic |
| GGATCATTAGAAGTAGAGGG+TGG | 0.734876 | 5.4:+3143695 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATAATTAATGAATAATA+AGG | - | chr5.4:3142962-3142981 | MS.gene058121:intron | 10.0% |
| !!! | TTTTTTATTTCATTTTCTTA+GGG | - | chr5.4:3140703-3140722 | MS.gene058121:intron | 10.0% |
| !! | AAAAGAAAAGAAAAACAAAA+GGG | - | chr5.4:3139880-3139899 | MS.gene058121:CDS | 15.0% |
| !! | TAAAAGAAAAGAAAAACAAA+AGG | - | chr5.4:3139879-3139898 | MS.gene058121:CDS | 15.0% |
| !!! | AATTAACAAATCAAAGTATT+TGG | + | chr5.4:3143764-3143783 | None:intergenic | 15.0% |
| !!! | ATTGAATCACTTTTTATTTA+GGG | - | chr5.4:3143470-3143489 | MS.gene058121:intron | 15.0% |
| !!! | ATTTCATTTTCTTAGTAAAA+GGG | + | chr5.4:3143554-3143573 | None:intergenic | 15.0% |
| !!! | CTATTTTTGTTTTTTGTTTT+TGG | - | chr5.4:3141896-3141915 | MS.gene058121:intron | 15.0% |
| !!! | CTTTTTTATTTCATTTTCTT+AGG | - | chr5.4:3140702-3140721 | MS.gene058121:intron | 15.0% |
| !!! | TAATGATTTTCTTTTCTTTT+AGG | + | chr5.4:3139925-3139944 | None:intergenic | 15.0% |
| !!! | TATTTCATTTTCTTAGTAAA+AGG | + | chr5.4:3143555-3143574 | None:intergenic | 15.0% |
| !!! | TTTGCTTATGATTATTTTTA+AGG | - | chr5.4:3140395-3140414 | MS.gene058121:intron | 15.0% |
| !! | AAAAAAAAAATCCAAGTGTA+AGG | + | chr5.4:3142337-3142356 | None:intergenic | 20.0% |
| !! | AAAAAGTCAATACATTTATG+TGG | - | chr5.4:3140355-3140374 | MS.gene058121:intron | 20.0% |
| !! | AAATTTGAATTACCTTTGTT+GGG | + | chr5.4:3140040-3140059 | None:intergenic | 20.0% |
| !! | AAGAATTAAGAAAGAGAAAA+TGG | + | chr5.4:3143530-3143549 | None:intergenic | 20.0% |
| !! | AGAATTAAGAAAGAGAAAAT+GGG | + | chr5.4:3143529-3143548 | None:intergenic | 20.0% |
| !! | AGTCATTCTTATAAACAATA+TGG | - | chr5.4:3143249-3143268 | MS.gene058121:intron | 20.0% |
| !! | ATGAAACAACATAAAAAACA+TGG | - | chr5.4:3141327-3141346 | MS.gene058121:intron | 20.0% |
| !! | ATTTGTAACTTCAATTTATG+TGG | - | chr5.4:3140847-3140866 | MS.gene058121:intron | 20.0% |
| !! | TAAATTTGAATTACCTTTGT+TGG | + | chr5.4:3140041-3140060 | None:intergenic | 20.0% |
| !! | TTTCCATAAGCTAAAAAATA+AGG | + | chr5.4:3140130-3140149 | None:intergenic | 20.0% |
| !! | TTTGTAACTTCAATTTATGT+GGG | - | chr5.4:3140848-3140867 | MS.gene058121:intron | 20.0% |
| !!! | ATGTTTTTTATGTTGTTTCA+TGG | + | chr5.4:3141328-3141347 | None:intergenic | 20.0% |
| !!! | ATTTGCTACATATAATTGTA+CGG | - | chr5.4:3143360-3143379 | MS.gene058121:intron | 20.0% |
| !!! | GATTGAATCACTTTTTATTT+AGG | - | chr5.4:3143469-3143488 | MS.gene058121:intron | 20.0% |
| !!! | TTCTATTTTTAAGTAGTGAA+AGG | + | chr5.4:3142828-3142847 | None:intergenic | 20.0% |
| !!! | TTTCATTTTCTTAGTAAAAG+GGG | + | chr5.4:3143553-3143572 | None:intergenic | 20.0% |
| !!! | TTTTGATCTAACTAAAACTT+TGG | + | chr5.4:3143505-3143524 | None:intergenic | 20.0% |
| ! | AAAACTTCAACTTAAGCAAA+CGG | + | chr5.4:3143682-3143701 | None:intergenic | 25.0% |
| ! | AAAGCTCAAGATAAATGAAA+TGG | + | chr5.4:3141957-3141976 | None:intergenic | 25.0% |
| ! | AAGAAGTTCATGCAATATTT+CGG | + | chr5.4:3141145-3141164 | None:intergenic | 25.0% |
| ! | AAGTCAAATTAGAACAATCA+GGG | + | chr5.4:3141083-3141102 | None:intergenic | 25.0% |
| ! | AAGTGATTCAATCGTAAATT+AGG | + | chr5.4:3143462-3143481 | None:intergenic | 25.0% |
| ! | AATATTTCATATGCATCGAA+AGG | - | chr5.4:3142057-3142076 | MS.gene058121:intron | 25.0% |
| ! | ACAATTATATGTAGCAAATC+TGG | + | chr5.4:3143359-3143378 | None:intergenic | 25.0% |
| ! | ACATAAAAAACATGGATCAA+TGG | - | chr5.4:3141335-3141354 | MS.gene058121:intron | 25.0% |
| ! | ACTATGCTAAAGTTTCAAAA+CGG | + | chr5.4:3142999-3143018 | None:intergenic | 25.0% |
| ! | ACTTATTCAATATGACACTT+AGG | - | chr5.4:3140090-3140109 | MS.gene058121:intron | 25.0% |
| ! | AGACGAGTAAAAAAATCAAT+AGG | + | chr5.4:3143427-3143446 | None:intergenic | 25.0% |
| ! | AGATAAACTAGATTCAAGAA+AGG | - | chr5.4:3143852-3143871 | MS.gene058121:CDS | 25.0% |
| ! | ATGTGACACTTACAATATTA+TGG | - | chr5.4:3143609-3143628 | MS.gene058121:intron | 25.0% |
| ! | CAAAAAACAAAAATAGAGTG+TGG | + | chr5.4:3141892-3141911 | None:intergenic | 25.0% |
| ! | CATTAATACTTGAGAAATAC+AGG | + | chr5.4:3142880-3142899 | None:intergenic | 25.0% |
| ! | GCTTATATGTTTGAATGTAA+AGG | - | chr5.4:3143126-3143145 | MS.gene058121:intron | 25.0% |
| ! | TAAGTCAAATTAGAACAATC+AGG | + | chr5.4:3141084-3141103 | None:intergenic | 25.0% |
| ! | TTACAATATTATGGCTGAAT+TGG | - | chr5.4:3143618-3143637 | MS.gene058121:intron | 25.0% |
| !! | AACTTATGTTGAATGCTTTT+AGG | - | chr5.4:3142373-3142392 | MS.gene058121:CDS | 25.0% |
| !! | ATAAACCCAAATGCATTTTT+CGG | - | chr5.4:3140599-3140618 | MS.gene058121:intron | 25.0% |
| !! | TTCATTTATCTTGAGCTTTT+TGG | - | chr5.4:3141958-3141977 | MS.gene058121:intron | 25.0% |
| !! | TTCATTTTCTTAGGGAATTT+CGG | - | chr5.4:3140711-3140730 | MS.gene058121:intron | 25.0% |
| !! | TTTTAATGACTTATCAGTTC+TGG | - | chr5.4:3143698-3143717 | MS.gene058121:CDS | 25.0% |
| !! | TTTTCATTTCGTCTTTCATT+GGG | - | chr5.4:3141483-3141502 | MS.gene058121:intron | 25.0% |
| !! | TTTTTCATTTCGTCTTTCAT+TGG | - | chr5.4:3141482-3141501 | MS.gene058121:intron | 25.0% |
| !!! | CTTATGATTATTTTTAAGGC+TGG | - | chr5.4:3140399-3140418 | MS.gene058121:intron | 25.0% |
| !!! | GATTGAACATATTGACTTTT+TGG | + | chr5.4:3141012-3141031 | None:intergenic | 25.0% |
| !!! | TTCTTCATTTTGATTTCTGA+AGG | - | chr5.4:3140807-3140826 | MS.gene058121:intron | 25.0% |
| !!! | TTGCCTTATTTTTTAGCTTA+TGG | - | chr5.4:3140124-3140143 | MS.gene058121:intron | 25.0% |
| AAAATCTGCTCACAACTAAT+GGG | - | chr5.4:3140949-3140968 | MS.gene058121:CDS | 30.0% | |
| AAACTAGATTCAAGAAAGGT+TGG | - | chr5.4:3143856-3143875 | MS.gene058121:CDS | 30.0% | |
| AAATTTGTCTGCATAACATG+TGG | + | chr5.4:3142628-3142647 | None:intergenic | 30.0% | |
| ACTGAAGATAATAAATTCCG+AGG | - | chr5.4:3142798-3142817 | MS.gene058121:intron | 30.0% | |
| ACTTACTTATGGAACTCTTT+AGG | + | chr5.4:3141366-3141385 | None:intergenic | 30.0% | |
| ATATGGCTGAGATTCTTATT+TGG | - | chr5.4:3143266-3143285 | MS.gene058121:intron | 30.0% | |
| ATTCAAATGAGAAACATTCC+CGG | + | chr5.4:3142263-3142282 | None:intergenic | 30.0% | |
| ATTTACAGTCACAGAAAGTT+GGG | + | chr5.4:3140928-3140947 | None:intergenic | 30.0% | |
| CATTATTAGATTGTCCTATC+AGG | - | chr5.4:3143304-3143323 | MS.gene058121:intron | 30.0% | |
| CTGATAGGACAATCTAATAA+TGG | + | chr5.4:3143306-3143325 | None:intergenic | 30.0% | |
| CTTGCACAAAATTATCAAGA+AGG | + | chr5.4:3141233-3141252 | None:intergenic | 30.0% | |
| TAAATACTTGCATGACTGTT+TGG | + | chr5.4:3140570-3140589 | None:intergenic | 30.0% | |
| TAACTAGCAGACAACTATTT+AGG | + | chr5.4:3142587-3142606 | None:intergenic | 30.0% | |
| TAATCTGTAGAGAAAGAAGA+TGG | - | chr5.4:3140891-3140910 | MS.gene058121:CDS | 30.0% | |
| TACTTGAGATATAACCTGAT+AGG | + | chr5.4:3143321-3143340 | None:intergenic | 30.0% | |
| TGGATGTTAATTATTTCCCA+CGG | - | chr5.4:3142013-3142032 | MS.gene058121:CDS | 30.0% | |
| TTATATGTAGCAAATCTGGT+TGG | + | chr5.4:3143355-3143374 | None:intergenic | 30.0% | |
| TTATTCCTGGAACAATAAAC+AGG | + | chr5.4:3141810-3141829 | None:intergenic | 30.0% | |
| TTCTTCATCTTCTCAAACAA+GGG | - | chr5.4:3141263-3141282 | MS.gene058121:intron | 30.0% | |
| TTGTTCCAGGAATAATCAAT+TGG | - | chr5.4:3141815-3141834 | MS.gene058121:CDS | 30.0% | |
| TTTCATTTCGTCTTTCATTG+GGG | - | chr5.4:3141484-3141503 | MS.gene058121:intron | 30.0% | |
| TTTCTTCATCTTCTCAAACA+AGG | - | chr5.4:3141262-3141281 | MS.gene058121:intron | 30.0% | |
| ! | ATGAACAGTGATTACTGATT+AGG | + | chr5.4:3141604-3141623 | None:intergenic | 30.0% |
| ! | GAGAAGATGTATTTTATGAC+AGG | - | chr5.4:3143172-3143191 | MS.gene058121:intron | 30.0% |
| ! | GAGCTTTTTGGATAATTACA+AGG | - | chr5.4:3141970-3141989 | MS.gene058121:intron | 30.0% |
| ! | TAAACCCAAATGCATTTTTC+GGG | - | chr5.4:3140600-3140619 | MS.gene058121:intron | 30.0% |
| ! | TACACTTTATGGAAGTATGT+TGG | - | chr5.4:3141401-3141420 | MS.gene058121:intron | 30.0% |
| ! | TACTTATATTTAAGGCCTGA+TGG | + | chr5.4:3140331-3140350 | None:intergenic | 30.0% |
| ! | TGTAAACTAACCCATTTTAC+TGG | - | chr5.4:3142726-3142745 | MS.gene058121:CDS | 30.0% |
| ! | TTTCTAAGAACACCAAAAGT+AGG | + | chr5.4:3142125-3142144 | None:intergenic | 30.0% |
| !! | AAGGACAGTTATTTTGTCAT+TGG | - | chr5.4:3141989-3142008 | MS.gene058121:intron | 30.0% |
| !! | ACAGTTATTTTGTCATTGGT+TGG | - | chr5.4:3141993-3142012 | MS.gene058121:intron | 30.0% |
| !! | CTTCTTGATAATTTTGTGCA+AGG | - | chr5.4:3141231-3141250 | MS.gene058121:intron | 30.0% |
| !! | GAAGTATTTTACGCAATCAT+TGG | - | chr5.4:3142156-3142175 | MS.gene058121:intron | 30.0% |
| !!! | ATGATTATTTTTAAGGCTGG+AGG | - | chr5.4:3140402-3140421 | MS.gene058121:intron | 30.0% |
| !!! | CTACATGGTGCTATTATTTT+AGG | - | chr5.4:3141861-3141880 | MS.gene058121:intron | 30.0% |
| !!! | GTGTTCAGTTGCTTTTAAAA+TGG | - | chr5.4:3143079-3143098 | MS.gene058121:intron | 30.0% |
| !!! | TGATTATTTTTAAGGCTGGA+GGG | - | chr5.4:3140403-3140422 | MS.gene058121:intron | 30.0% |
| !!! | TTTTAGAGTTCAGACTTCAA+AGG | + | chr5.4:3141036-3141055 | None:intergenic | 30.0% |
| AAATACAGGAATAACAGCTC+TGG | + | chr5.4:3142866-3142885 | None:intergenic | 35.0% | |
| AAATCTGCTCACAACTAATG+GGG | - | chr5.4:3140950-3140969 | MS.gene058121:CDS | 35.0% | |
| AAGTAGTGAAAGGATTACCT+CGG | + | chr5.4:3142818-3142837 | None:intergenic | 35.0% | |
| ACAAACCTGTTTATTGTTCC+AGG | - | chr5.4:3141802-3141821 | MS.gene058121:intron | 35.0% | |
| AGAGACCTTGAACTTACTTA+TGG | + | chr5.4:3141377-3141396 | None:intergenic | 35.0% | |
| ATTACCTTTGTTGGGTGTAT+CGG | + | chr5.4:3140032-3140051 | None:intergenic | 35.0% | |
| ATTCACAGGTTTCATTACAG+CGG | + | chr5.4:3142101-3142120 | None:intergenic | 35.0% | |
| ATTGCATGAACTTCTTCAGA+AGG | - | chr5.4:3141149-3141168 | MS.gene058121:intron | 35.0% | |
| CAAAAATAAGCCAATCCAAG+CGG | - | chr5.4:3140291-3140310 | MS.gene058121:intron | 35.0% | |
| CAAATTTGTACAGCAAACAC+TGG | + | chr5.4:3142945-3142964 | None:intergenic | 35.0% | |
| CATTTACAGTCACAGAAAGT+TGG | + | chr5.4:3140929-3140948 | None:intergenic | 35.0% | |
| GAAAATCTGCTCACAACTAA+TGG | - | chr5.4:3140948-3140967 | MS.gene058121:CDS | 35.0% | |
| GAGTTCCATAAGTAAGTTCA+AGG | - | chr5.4:3141369-3141388 | MS.gene058121:intron | 35.0% | |
| GATTTAATAACAGTACCCAG+TGG | + | chr5.4:3141700-3141719 | None:intergenic | 35.0% | |
| GGAATTCTTAGATTCATGCT+AGG | - | chr5.4:3141505-3141524 | MS.gene058121:intron | 35.0% | |
| GGTCTCTAAACTACACTTTA+TGG | - | chr5.4:3141390-3141409 | MS.gene058121:intron | 35.0% | |
| TAGTAAGATGAGCTTCTGAT+TGG | - | chr5.4:3142211-3142230 | MS.gene058121:intron | 35.0% | |
| TGTGCAATTCATCAATAGCA+AGG | + | chr5.4:3141722-3141741 | None:intergenic | 35.0% | |
| TTGAGCCAATTGATTATTCC+TGG | + | chr5.4:3141823-3141842 | None:intergenic | 35.0% | |
| TTGCATGAACTTCTTCAGAA+GGG | - | chr5.4:3141150-3141169 | MS.gene058121:intron | 35.0% | |
| ! | AAGTTGTTGCTTAAATCCAC+TGG | - | chr5.4:3141681-3141700 | MS.gene058121:intron | 35.0% |
| ! | AGTGTAAGGAGCATGAAAAA+AGG | + | chr5.4:3142323-3142342 | None:intergenic | 35.0% |
| ! | AGTTGTTGCTTAAATCCACT+GGG | - | chr5.4:3141682-3141701 | MS.gene058121:intron | 35.0% |
| ! | GATGTATTTTATGACAGGCA+TGG | - | chr5.4:3143177-3143196 | MS.gene058121:intron | 35.0% |
| ! | GGTTTAGCATTTTCTGTTGT+AGG | + | chr5.4:3141936-3141955 | None:intergenic | 35.0% |
| ! | GTGTAAGGAGCATGAAAAAA+GGG | + | chr5.4:3142322-3142341 | None:intergenic | 35.0% |
| ! | TCAGCACTTTTATTCTCTCA+CGG | - | chr5.4:3141762-3141781 | MS.gene058121:intron | 35.0% |
| ! | TTAGGGAATTTCGGTCTTTT+TGG | - | chr5.4:3140720-3140739 | MS.gene058121:intron | 35.0% |
| ! | TTGACTCGAAAGTCGTTAAT+AGG | - | chr5.4:3143581-3143600 | MS.gene058121:intron | 35.0% |
| ! | TTGGTGTTCTTAGAAAGAGT+TGG | - | chr5.4:3142129-3142148 | MS.gene058121:intron | 35.0% |
| ! | TTTTTCATGCTCCTTACACT+TGG | - | chr5.4:3142323-3142342 | MS.gene058121:CDS | 35.0% |
| !! | AGCTGTTTCTACATTTCAAG+AGG | - | chr5.4:3140456-3140475 | MS.gene058121:intron | 35.0% |
| !! | GCTGTTTCTACATTTCAAGA+GGG | - | chr5.4:3140457-3140476 | MS.gene058121:intron | 35.0% |
| !! | TTGTACTACAAGTTGATTGC+TGG | - | chr5.4:3143812-3143831 | MS.gene058121:CDS | 35.0% |
| AATTGCAGTTGTTCCGAAGA+AGG | - | chr5.4:3143780-3143799 | MS.gene058121:CDS | 40.0% | |
| ACACAGAATTGTGATGCTCA+AGG | + | chr5.4:3143658-3143677 | None:intergenic | 40.0% | |
| ACAGAAAGTTGGGCATATTC+TGG | + | chr5.4:3140918-3140937 | None:intergenic | 40.0% | |
| ATAAAGACATGAGCATCCGT+GGG | + | chr5.4:3142032-3142051 | None:intergenic | 40.0% | |
| ATACACTACCACAAACTGCA+GGG | + | chr5.4:3141448-3141467 | None:intergenic | 40.0% | |
| ATCCACATGTTATGCAGTTG+TGG | - | chr5.4:3142701-3142720 | MS.gene058121:intron | 40.0% | |
| ATTGCAGTTGTTCCGAAGAA+GGG | - | chr5.4:3143781-3143800 | MS.gene058121:CDS | 40.0% | |
| CAATGCATGTTGAGTCATCT+AGG | + | chr5.4:3142492-3142511 | None:intergenic | 40.0% | |
| CAGTACAGTACCTTGTGAAA+TGG | + | chr5.4:3140751-3140770 | None:intergenic | 40.0% | |
| CTAGCAGACAACTATTTAGG+AGG | + | chr5.4:3142584-3142603 | None:intergenic | 40.0% | |
| CTAGCCCGAAAAATGCATTT+GGG | + | chr5.4:3140607-3140626 | None:intergenic | 40.0% | |
| GACAACTATTTAGGAGGTAG+AGG | + | chr5.4:3142578-3142597 | None:intergenic | 40.0% | |
| GACGGATCATTAGAAGTAGA+GGG | + | chr5.4:3139986-3140005 | None:intergenic | 40.0% | |
| TAGTTTATCTCCAAGCAGAG+TGG | + | chr5.4:3143842-3143861 | None:intergenic | 40.0% | |
| TATACACTACCACAAACTGC+AGG | + | chr5.4:3141449-3141468 | None:intergenic | 40.0% | |
| TCAAGAGGGAATAAGCAATG+TGG | - | chr5.4:3140471-3140490 | MS.gene058121:intron | 40.0% | |
| TCTAGCCCGAAAAATGCATT+TGG | + | chr5.4:3140608-3140627 | None:intergenic | 40.0% | |
| TCTTTCCACATGTCATGCAT+TGG | + | chr5.4:3141654-3141673 | None:intergenic | 40.0% | |
| TGAATCAAGGAAACGTGCAA+TGG | - | chr5.4:3139820-3139839 | MS.gene058121:CDS | 40.0% | |
| ! | AACCTGTGAATGCCTACTTT+TGG | - | chr5.4:3142110-3142129 | MS.gene058121:intron | 40.0% |
| ! | ATGAGCTTCTGATTGGTTCA+AGG | - | chr5.4:3142218-3142237 | MS.gene058121:intron | 40.0% |
| ! | CTAACCCATTTTACTGGAAC+TGG | - | chr5.4:3142732-3142751 | MS.gene058121:CDS | 40.0% |
| ! | CTGCTTGTTACTCAAGAAAG+CGG | + | chr5.4:3143222-3143241 | None:intergenic | 40.0% |
| ! | GTGAAACTGCAGAAGCTTTT+GGG | - | chr5.4:3142769-3142788 | MS.gene058121:CDS | 40.0% |
| ! | GTTGAGTCATCTAGGAGTTT+TGG | + | chr5.4:3142484-3142503 | None:intergenic | 40.0% |
| ! | TTTAAGGCCTGATGGAACAA+TGG | + | chr5.4:3140323-3140342 | None:intergenic | 40.0% |
| !! | CAGTTTTCTTCTGAAAGAGG+AGG | - | chr5.4:3141111-3141130 | MS.gene058121:intron | 40.0% |
| !! | CTGCAGTTTTCTTCTGAAAG+AGG | - | chr5.4:3141108-3141127 | MS.gene058121:intron | 40.0% |
| AGAGGGAATAAGCAATGTGG+AGG | - | chr5.4:3140474-3140493 | MS.gene058121:intron | 45.0% | |
| ATACCTAGGTCTTCTTCTCC+GGG | - | chr5.4:3142242-3142261 | MS.gene058121:intron | 45.0% | |
| ATCAAGGAAACGTGCAATGG+AGG | - | chr5.4:3139823-3139842 | MS.gene058121:CDS | 45.0% | |
| CACCAAAAGTAGGCATTCAC+AGG | + | chr5.4:3142115-3142134 | None:intergenic | 45.0% | |
| CATAAAGACATGAGCATCCG+TGG | + | chr5.4:3142033-3142052 | None:intergenic | 45.0% | |
| CATACCTAGGTCTTCTTCTC+CGG | - | chr5.4:3142241-3142260 | MS.gene058121:intron | 45.0% | |
| CTCCACAACTGCATAACATG+TGG | + | chr5.4:3142706-3142725 | None:intergenic | 45.0% | |
| GACCATACCATTGTTCCATC+AGG | - | chr5.4:3140313-3140332 | MS.gene058121:intron | 45.0% | |
| GCCACCAGTTCCAGTAAAAT+GGG | + | chr5.4:3142739-3142758 | None:intergenic | 45.0% | |
| GGACGGATCATTAGAAGTAG+AGG | + | chr5.4:3139987-3140006 | None:intergenic | 45.0% | |
| GGATCATTAGAAGTAGAGGG+TGG | + | chr5.4:3139983-3140002 | None:intergenic | 45.0% | |
| GGGCTGTAGTAGTAATGACA+AGG | + | chr5.4:3141428-3141447 | None:intergenic | 45.0% | |
| TCAAGCCAATGCATGACATG+TGG | - | chr5.4:3141646-3141665 | MS.gene058121:intron | 45.0% | |
| TCATCCGATACACCCAACAA+AGG | - | chr5.4:3140025-3140044 | MS.gene058121:intron | 45.0% | |
| TCATTAGAAGTAGAGGGTGG+TGG | + | chr5.4:3139980-3139999 | None:intergenic | 45.0% | |
| TGCCACCAGTTCCAGTAAAA+TGG | + | chr5.4:3142740-3142759 | None:intergenic | 45.0% | |
| TTGTTGGGTGTATCGGATGA+TGG | + | chr5.4:3140025-3140044 | None:intergenic | 45.0% | |
| ! | ACCCATTTTACTGGAACTGG+TGG | - | chr5.4:3142735-3142754 | MS.gene058121:CDS | 45.0% |
| ! | CAATTGGCTCAATGTCTCCT+AGG | - | chr5.4:3141831-3141850 | MS.gene058121:CDS | 45.0% |
| ! | CGTGAAACTGCAGAAGCTTT+TGG | - | chr5.4:3142768-3142787 | MS.gene058121:CDS | 45.0% |
| ! | GATTGGTTCAAGGCATACCT+AGG | - | chr5.4:3142228-3142247 | MS.gene058121:intron | 45.0% |
| ! | GCAGCACAAAAGTACATGCA+AGG | - | chr5.4:3141177-3141196 | MS.gene058121:intron | 45.0% |
| ! | TGATGGACGACATAAAGGCA+AGG | + | chr5.4:3140008-3140027 | None:intergenic | 45.0% |
| !! | TCGGATGATGGACGACATAA+AGG | + | chr5.4:3140013-3140032 | None:intergenic | 45.0% |
| !! | TTTGGTCGTGCCATTTCACA+AGG | - | chr5.4:3140738-3140757 | MS.gene058121:intron | 45.0% |
| !!! | TTTTTTTTTACTTATATTTA+AGG | + | chr5.4:3140339-3140358 | None:intergenic | 5.0% |
| ATGGTATGGTCCGCTTGGAT+TGG | + | chr5.4:3140304-3140323 | None:intergenic | 50.0% | |
| ATTCCCGGAGAAGAAGACCT+AGG | + | chr5.4:3142248-3142267 | None:intergenic | 50.0% | |
| CACCATGTAGATCTGCACCT+AGG | + | chr5.4:3141851-3141870 | None:intergenic | 50.0% | |
| CTCCTAGGTGCAGATCTACA+TGG | - | chr5.4:3141846-3141865 | MS.gene058121:CDS | 50.0% | |
| GAAACGTGCAATGGAGGCTT+TGG | - | chr5.4:3139829-3139848 | MS.gene058121:CDS | 50.0% | |
| GAACAATGGTATGGTCCGCT+TGG | + | chr5.4:3140309-3140328 | None:intergenic | 50.0% | |
| GGACGACATAAAGGCAAGGA+CGG | + | chr5.4:3140004-3140023 | None:intergenic | 50.0% | |
| GGCCTGATGGAACAATGGTA+TGG | + | chr5.4:3140318-3140337 | None:intergenic | 50.0% | |
| TACTACAGCCCTGCAGTTTG+TGG | - | chr5.4:3141437-3141456 | MS.gene058121:intron | 50.0% | |
| TCTGCTCACAACTAATGGGG+AGG | - | chr5.4:3140953-3140972 | MS.gene058121:CDS | 50.0% | |
| ! | CGTGCCACTGGGAATGAAAA+GGG | + | chr5.4:3142289-3142308 | None:intergenic | 50.0% |
| ! | TCCTCCCTTTTCATTCCCAG+TGG | - | chr5.4:3142282-3142301 | MS.gene058121:intron | 50.0% |
| GCCACTGGGAATGAAAAGGG+AGG | + | chr5.4:3142286-3142305 | None:intergenic | 55.0% | |
| TGCTGGAAAGCCACTCTGCT+TGG | - | chr5.4:3143829-3143848 | MS.gene058121:CDS | 55.0% | |
| ! | GCGTGCCACTGGGAATGAAA+AGG | + | chr5.4:3142290-3142309 | None:intergenic | 55.0% |
| ! | GTATGCGTATGCGTGCCACT+GGG | + | chr5.4:3142300-3142319 | None:intergenic | 55.0% |
| GGTATGCGTATGCGTGCCAC+TGG | + | chr5.4:3142301-3142320 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 3139812 | 3143885 | 3139812 | ID=MS.gene058121 |
| chr5.4 | mRNA | 3139812 | 3143885 | 3139812 | ID=MS.gene058121.t1;Parent=MS.gene058121 |
| chr5.4 | exon | 3143651 | 3143885 | 3143651 | ID=MS.gene058121.t1.exon1;Parent=MS.gene058121.t1 |
| chr5.4 | CDS | 3143651 | 3143885 | 3143651 | ID=cds.MS.gene058121.t1;Parent=MS.gene058121.t1 |
| chr5.4 | exon | 3142938 | 3142973 | 3142938 | ID=MS.gene058121.t1.exon2;Parent=MS.gene058121.t1 |
| chr5.4 | CDS | 3142938 | 3142973 | 3142938 | ID=cds.MS.gene058121.t1;Parent=MS.gene058121.t1 |
| chr5.4 | exon | 3142723 | 3142796 | 3142723 | ID=MS.gene058121.t1.exon3;Parent=MS.gene058121.t1 |
| chr5.4 | CDS | 3142723 | 3142796 | 3142723 | ID=cds.MS.gene058121.t1;Parent=MS.gene058121.t1 |
| chr5.4 | exon | 3142318 | 3142583 | 3142318 | ID=MS.gene058121.t1.exon4;Parent=MS.gene058121.t1 |
| chr5.4 | CDS | 3142318 | 3142583 | 3142318 | ID=cds.MS.gene058121.t1;Parent=MS.gene058121.t1 |
| chr5.4 | exon | 3141994 | 3142062 | 3141994 | ID=MS.gene058121.t1.exon5;Parent=MS.gene058121.t1 |
| chr5.4 | CDS | 3141994 | 3142062 | 3141994 | ID=cds.MS.gene058121.t1;Parent=MS.gene058121.t1 |
| chr5.4 | exon | 3141815 | 3141873 | 3141815 | ID=MS.gene058121.t1.exon6;Parent=MS.gene058121.t1 |
| chr5.4 | CDS | 3141815 | 3141873 | 3141815 | ID=cds.MS.gene058121.t1;Parent=MS.gene058121.t1 |
| chr5.4 | exon | 3140878 | 3140979 | 3140878 | ID=MS.gene058121.t1.exon7;Parent=MS.gene058121.t1 |
| chr5.4 | CDS | 3140878 | 3140979 | 3140878 | ID=cds.MS.gene058121.t1;Parent=MS.gene058121.t1 |
| chr5.4 | exon | 3139812 | 3139909 | 3139812 | ID=MS.gene058121.t1.exon8;Parent=MS.gene058121.t1 |
| chr5.4 | CDS | 3139812 | 3139909 | 3139812 | ID=cds.MS.gene058121.t1;Parent=MS.gene058121.t1 |
| Gene Sequence |
| Protein sequence |
