Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072375.t1 | XP_003625216.1 | 100 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 1.40E-61 | 245.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072375.t1 | Q9STY6 | 89.3 | 122 | 13 | 0 | 1 | 122 | 1 | 122 | 2.2e-55 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072375.t1 | A2Q4V6 | 100.0 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 1.0e-61 | 245.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene072375 | -0.815912 | 7.25E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene072375 | -0.840152 | 1.03E-57 | -1.69E-46 |
| MS.gene049435 | MS.gene072375 | -0.805719 | 1.17E-49 | -1.69E-46 |
| MS.gene050105 | MS.gene072375 | -0.843994 | 9.95E-59 | -1.69E-46 |
| MS.gene050442 | MS.gene072375 | -0.800513 | 1.39E-48 | -1.69E-46 |
| MS.gene050680 | MS.gene072375 | -0.82693 | 2.07E-54 | -1.69E-46 |
| MS.gene050750 | MS.gene072375 | -0.840308 | 9.40E-58 | -1.69E-46 |
| MS.gene050826 | MS.gene072375 | -0.815021 | 1.14E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene072375 | -0.832305 | 1.02E-55 | -1.69E-46 |
| MS.gene051122 | MS.gene072375 | -0.845842 | 3.15E-59 | -1.69E-46 |
| MS.gene051368 | MS.gene072375 | -0.857179 | 1.95E-62 | -1.69E-46 |
| MS.gene051568 | MS.gene072375 | -0.803183 | 3.94E-49 | -1.69E-46 |
| MS.gene051924 | MS.gene072375 | 0.885665 | 6.68E-72 | -1.69E-46 |
| MS.gene051926 | MS.gene072375 | 0.887901 | 9.49E-73 | -1.69E-46 |
| MS.gene05216 | MS.gene072375 | -0.807969 | 3.90E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene072375 | -0.80818 | 3.52E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene072375 | -0.867961 | 9.30E-66 | -1.69E-46 |
| MS.gene052389 | MS.gene072375 | -0.824798 | 6.64E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene072375 | -0.801133 | 1.04E-48 | -1.69E-46 |
| MS.gene052674 | MS.gene072375 | -0.862431 | 5.09E-64 | -1.69E-46 |
| MS.gene052675 | MS.gene072375 | -0.860872 | 1.53E-63 | -1.69E-46 |
| MS.gene052677 | MS.gene072375 | -0.869921 | 2.16E-66 | -1.69E-46 |
| MS.gene053166 | MS.gene072375 | -0.849553 | 3.00E-60 | -1.69E-46 |
| MS.gene053176 | MS.gene072375 | -0.807353 | 5.27E-50 | -1.69E-46 |
| MS.gene053494 | MS.gene072375 | -0.802128 | 6.50E-49 | -1.69E-46 |
| MS.gene053584 | MS.gene072375 | -0.803986 | 2.68E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene072375 | -0.819085 | 1.40E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene072375 | 0.837907 | 3.94E-57 | -1.69E-46 |
| MS.gene054405 | MS.gene072375 | -0.829436 | 5.15E-55 | -1.69E-46 |
| MS.gene054468 | MS.gene072375 | -0.829489 | 5.00E-55 | -1.69E-46 |
| MS.gene054479 | MS.gene072375 | -0.806598 | 7.61E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene072375 | -0.827253 | 1.73E-54 | -1.69E-46 |
| MS.gene05491 | MS.gene072375 | 0.800275 | 1.56E-48 | -1.69E-46 |
| MS.gene055356 | MS.gene072375 | -0.800097 | 1.69E-48 | -1.69E-46 |
| MS.gene055367 | MS.gene072375 | -0.839838 | 1.25E-57 | -1.69E-46 |
| MS.gene055453 | MS.gene072375 | 0.828493 | 8.72E-55 | -1.69E-46 |
| MS.gene055455 | MS.gene072375 | 0.835784 | 1.37E-56 | -1.69E-46 |
| MS.gene055701 | MS.gene072375 | -0.883032 | 6.32E-71 | -1.69E-46 |
| MS.gene05595 | MS.gene072375 | -0.86967 | 2.60E-66 | -1.69E-46 |
| MS.gene056480 | MS.gene072375 | -0.843733 | 1.17E-58 | -1.69E-46 |
| MS.gene056506 | MS.gene072375 | -0.842723 | 2.17E-58 | -1.69E-46 |
| MS.gene056723 | MS.gene072375 | -0.801228 | 9.94E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene072375 | -0.811608 | 6.43E-51 | -1.69E-46 |
| MS.gene056873 | MS.gene072375 | -0.821902 | 3.15E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene072375 | -0.801525 | 8.64E-49 | -1.69E-46 |
| MS.gene057156 | MS.gene072375 | 0.884869 | 1.33E-71 | -1.69E-46 |
| MS.gene05761 | MS.gene072375 | -0.81657 | 5.17E-52 | -1.69E-46 |
| MS.gene058223 | MS.gene072375 | 0.861626 | 8.99E-64 | -1.69E-46 |
| MS.gene058898 | MS.gene072375 | -0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene059160 | MS.gene072375 | -0.810274 | 1.25E-50 | -1.69E-46 |
| MS.gene059161 | MS.gene072375 | -0.864367 | 1.28E-64 | -1.69E-46 |
| MS.gene059162 | MS.gene072375 | -0.829319 | 5.50E-55 | -1.69E-46 |
| MS.gene059609 | MS.gene072375 | -0.817799 | 2.73E-52 | -1.69E-46 |
| MS.gene060010 | MS.gene072375 | -0.816255 | 6.08E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene072375 | -0.855765 | 5.06E-62 | -1.69E-46 |
| MS.gene060322 | MS.gene072375 | -0.822929 | 1.82E-53 | -1.69E-46 |
| MS.gene06052 | MS.gene072375 | -0.832195 | 1.09E-55 | -1.69E-46 |
| MS.gene060683 | MS.gene072375 | -0.811181 | 7.96E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene072375 | -0.813493 | 2.49E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene072375 | -0.830609 | 2.67E-55 | -1.69E-46 |
| MS.gene060850 | MS.gene072375 | -0.81687 | 4.42E-52 | -1.69E-46 |
| MS.gene060851 | MS.gene072375 | -0.829551 | 4.83E-55 | -1.69E-46 |
| MS.gene060852 | MS.gene072375 | -0.828736 | 7.62E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene072375 | 0.830103 | 3.55E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045681 | MS.gene072375 | PPI |
| MS.gene072375 | MS.gene04591 | PPI |
| MS.gene072375 | MS.gene059832 | PPI |
| MS.gene017955 | MS.gene072375 | PPI |
| MS.gene72479 | MS.gene072375 | PPI |
| MS.gene072375 | MS.gene78060 | PPI |
| MS.gene072375 | MS.gene77739 | PPI |
| MS.gene031439 | MS.gene072375 | PPI |
| MS.gene04591 | MS.gene072375 | PPI |
| MS.gene068750 | MS.gene072375 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072375.t1 | MTR_7g092720 | 100.000 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 1.11e-87 | 250 |
| MS.gene072375.t1 | MTR_0157s0070 | 98.361 | 122 | 2 | 0 | 1 | 122 | 1 | 122 | 7.09e-87 | 248 |
| MS.gene072375.t1 | MTR_4g034030 | 98.361 | 122 | 2 | 0 | 1 | 122 | 1 | 122 | 7.09e-87 | 248 |
| MS.gene072375.t1 | MTR_2g085090 | 97.500 | 120 | 3 | 0 | 3 | 122 | 4 | 123 | 9.83e-84 | 240 |
| MS.gene072375.t1 | MTR_1g091057 | 97.500 | 120 | 3 | 0 | 3 | 122 | 4 | 123 | 9.83e-84 | 240 |
| MS.gene072375.t1 | MTR_4g034030 | 98.824 | 85 | 1 | 0 | 38 | 122 | 3 | 87 | 3.02e-58 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072375.t1 | AT3G47370 | 89.344 | 122 | 13 | 0 | 1 | 122 | 1 | 122 | 2.23e-76 | 222 |
| MS.gene072375.t1 | AT3G47370 | 89.344 | 122 | 13 | 0 | 1 | 122 | 1 | 122 | 2.23e-76 | 222 |
| MS.gene072375.t1 | AT3G47370 | 89.344 | 122 | 13 | 0 | 1 | 122 | 1 | 122 | 2.23e-76 | 222 |
| MS.gene072375.t1 | AT5G62300 | 89.256 | 121 | 13 | 0 | 2 | 122 | 4 | 124 | 1.92e-75 | 219 |
| MS.gene072375.t1 | AT5G62300 | 89.256 | 121 | 13 | 0 | 2 | 122 | 4 | 124 | 1.92e-75 | 219 |
| MS.gene072375.t1 | AT3G45030 | 89.256 | 121 | 13 | 0 | 2 | 122 | 4 | 124 | 1.92e-75 | 219 |
Find 42 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTAGTTTGTGCTGATT+TGG | 0.351954 | 7.4:-16083317 | MS.gene072375:intron |
| AAAGGGTGATCCTAATCTTA+TGG | 0.356442 | 7.4:+16083450 | None:intergenic |
| TTCTCCACAAGGAGTCTTCC+TGG | 0.359877 | 7.4:+16083219 | None:intergenic |
| GTAATCTGTTTAACAACATC+TGG | 0.381438 | 7.4:+16082202 | None:intergenic |
| AATCTTATGGATCTGCTCTT+GGG | 0.403761 | 7.4:+16083463 | None:intergenic |
| TAATCTTATGGATCTGCTCT+TGG | 0.405883 | 7.4:+16083462 | None:intergenic |
| GGATTCCTCCAAACCAGGCT+TGG | 0.415376 | 7.4:+16083484 | None:intergenic |
| GAAACCCACCAAGCCTGGTT+TGG | 0.420702 | 7.4:-16083492 | MS.gene072375:CDS |
| TCCTCCAAACCAGGCTTGGT+GGG | 0.429749 | 7.4:+16083488 | None:intergenic |
| TTCCTCCAAACCAGGCTTGG+TGG | 0.433644 | 7.4:+16083487 | None:intergenic |
| GTGATATGAAGAACCTTAGT+AGG | 0.436083 | 7.4:+16083244 | None:intergenic |
| TTAGAGTGAAGGGTCCTGTT+AGG | 0.436691 | 7.4:-16083270 | MS.gene072375:CDS |
| ACCTTAGTAGGCATCCTAAC+AGG | 0.444549 | 7.4:+16083256 | None:intergenic |
| AAGAGCAGATCCATAAGATT+AGG | 0.460004 | 7.4:-16083460 | MS.gene072375:CDS |
| TTGTTACAGGTACCAACACC+TGG | 0.473935 | 7.4:-16082276 | MS.gene072375:intron |
| TTTGACATGCTTGGAGGAAA+GGG | 0.476236 | 7.4:+16083433 | None:intergenic |
| ACCAGGTTCGATGGTGATAG+AGG | 0.489959 | 7.4:+16082180 | None:intergenic |
| GTTTGTGCTGATTTGGTTCG+TGG | 0.496204 | 7.4:-16083310 | MS.gene072375:CDS |
| GCGATGAAACCCACCAAGCC+TGG | 0.496657 | 7.4:-16083497 | MS.gene072375:CDS |
| CGAACCTGGTGTCGAGGTTG+AGG | 0.501443 | 7.4:-16082167 | MS.gene072375:CDS |
| AGGAAGACTCCTTGTGGAGA+AGG | 0.508893 | 7.4:-16083217 | MS.gene072375:intron |
| TCCTGTTAGGATGCCTACTA+AGG | 0.508963 | 7.4:-16083257 | MS.gene072375:CDS |
| ACCCACCAAGCCTGGTTTGG+AGG | 0.512859 | 7.4:-16083489 | MS.gene072375:CDS |
| TCTTGGGATTCCTCCAAACC+AGG | 0.514536 | 7.4:+16083479 | None:intergenic |
| ACCTCTATCACCATCGAACC+TGG | 0.519945 | 7.4:-16082181 | MS.gene072375:CDS |
| TAATCTGTTTAACAACATCT+GGG | 0.529679 | 7.4:+16082203 | None:intergenic |
| TGATTTGGTTCGTGGCGCTA+AGG | 0.536928 | 7.4:-16083302 | MS.gene072375:CDS |
| AACCTCGACACCAGGTTCGA+TGG | 0.552766 | 7.4:+16082171 | None:intergenic |
| CACCATCGAACCTGGTGTCG+AGG | 0.559437 | 7.4:-16082173 | MS.gene072375:CDS |
| CGATAACTCTCTTGTGCACA+CGG | 0.563868 | 7.4:+16082239 | None:intergenic |
| GGATAAGCATCTTAGAGTGA+AGG | 0.564807 | 7.4:-16083281 | MS.gene072375:CDS |
| TTCAAATCTATCCCAGGTGT+TGG | 0.568966 | 7.4:+16082264 | None:intergenic |
| GATAAGCATCTTAGAGTGAA+GGG | 0.578400 | 7.4:-16083280 | MS.gene072375:CDS |
| GTAACCTCAACCTCGACACC+AGG | 0.583580 | 7.4:+16082163 | None:intergenic |
| CAACATCTGGGGAACTGTAG+AGG | 0.590461 | 7.4:+16082215 | None:intergenic |
| ACGGAGTTCAAATCTATCCC+AGG | 0.607565 | 7.4:+16082258 | None:intergenic |
| AGGTTCTTCATATCACTACC+AGG | 0.631821 | 7.4:-16083237 | MS.gene072375:CDS |
| TTAAGATCAAGCATCTGCAA+TGG | 0.639875 | 7.4:+16082141 | None:intergenic |
| AATGAAATACCTTCTCCACA+AGG | 0.646547 | 7.4:+16083208 | None:intergenic |
| ACTACCAGGAAGACTCCTTG+TGG | 0.667890 | 7.4:-16083223 | MS.gene072375:CDS |
| TGTTACAGGTACCAACACCT+GGG | 0.689167 | 7.4:-16082275 | MS.gene072375:intron |
| AATCTGTTTAACAACATCTG+GGG | 0.693040 | 7.4:+16082204 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTCTTTAAAATAATAAAT+GGG | - | chr7.4:16082817-16082836 | MS.gene072375:intron | 10.0% |
| !!! | TTTTATAATTATTTGATGAA+AGG | - | chr7.4:16082514-16082533 | MS.gene072375:intron | 10.0% |
| !!! | GTTCTCTTTAAAATAATAAA+TGG | - | chr7.4:16082816-16082835 | MS.gene072375:intron | 15.0% |
| !!! | TTTAATTCAGTTTTGTTGAA+TGG | - | chr7.4:16083017-16083036 | MS.gene072375:intron | 20.0% |
| ! | AATTATCCTACAACCTTAAT+TGG | - | chr7.4:16082919-16082938 | MS.gene072375:intron | 25.0% |
| ! | TAATCTGTTTAACAACATCT+GGG | + | chr7.4:16083456-16083475 | None:intergenic | 25.0% |
| !! | TGAGAGCATAAAAAACATAA+AGG | + | chr7.4:16082281-16082300 | None:intergenic | 25.0% |
| !! | TTTCATTGTGTTCTATCTTT+TGG | - | chr7.4:16082891-16082910 | MS.gene072375:intron | 25.0% |
| !!! | GCATTTTGTTATTATGCTAT+TGG | - | chr7.4:16083195-16083214 | MS.gene072375:intron | 25.0% |
| !!! | TGTTTCTGAACAAATTTTGA+AGG | - | chr7.4:16083062-16083081 | MS.gene072375:intron | 25.0% |
| AATCTGTTTAACAACATCTG+GGG | + | chr7.4:16083455-16083474 | None:intergenic | 30.0% | |
| AGATTAGAAACATCATTGAG+AGG | - | chr7.4:16082552-16082571 | MS.gene072375:intron | 30.0% | |
| ATTTGATGAAAGGTAGTCAA+TGG | - | chr7.4:16082524-16082543 | MS.gene072375:intron | 30.0% | |
| GATTAGAAACATCATTGAGA+GGG | - | chr7.4:16082553-16082572 | MS.gene072375:intron | 30.0% | |
| GTAATCTGTTTAACAACATC+TGG | + | chr7.4:16083457-16083476 | None:intergenic | 30.0% | |
| TAAAGAGAACAAACCAAACA+CGG | + | chr7.4:16082806-16082825 | None:intergenic | 30.0% | |
| TCCTAATATGGCTTACAAAT+GGG | - | chr7.4:16082693-16082712 | MS.gene072375:intron | 30.0% | |
| ! | CTAGTTGTAGTTTTTGCAAT+TGG | - | chr7.4:16082850-16082869 | MS.gene072375:intron | 30.0% |
| ! | GTTTTTCTAAGCTCCTAATA+TGG | - | chr7.4:16082681-16082700 | MS.gene072375:intron | 30.0% |
| !! | GTTATTAGTTTGTGCTGATT+TGG | - | chr7.4:16082339-16082358 | MS.gene072375:intron | 30.0% |
| AAAGGGTGATCCTAATCTTA+TGG | + | chr7.4:16082209-16082228 | None:intergenic | 35.0% | |
| AAATACGATATAGCCGTGTT+TGG | - | chr7.4:16082790-16082809 | MS.gene072375:intron | 35.0% | |
| AAGAGCAGATCCATAAGATT+AGG | - | chr7.4:16082196-16082215 | MS.gene072375:CDS | 35.0% | |
| AATCTTATGGATCTGCTCTT+GGG | + | chr7.4:16082196-16082215 | None:intergenic | 35.0% | |
| AATGAAATACCTTCTCCACA+AGG | + | chr7.4:16082451-16082470 | None:intergenic | 35.0% | |
| ACCCATTTGTAAGCCATATT+AGG | + | chr7.4:16082697-16082716 | None:intergenic | 35.0% | |
| ATCCTACACTTCAATGACAA+TGG | + | chr7.4:16083302-16083321 | None:intergenic | 35.0% | |
| ATGACCTTACTTCTTGTTAC+AGG | - | chr7.4:16083367-16083386 | MS.gene072375:intron | 35.0% | |
| CATGTCAAAAATCTCGAGAA+GGG | - | chr7.4:16082237-16082256 | MS.gene072375:CDS | 35.0% | |
| CTCCTAATATGGCTTACAAA+TGG | - | chr7.4:16082692-16082711 | MS.gene072375:intron | 35.0% | |
| GATAAGCATCTTAGAGTGAA+GGG | - | chr7.4:16082376-16082395 | MS.gene072375:intron | 35.0% | |
| GCATCTAAATTTCCATAAGC+AGG | + | chr7.4:16082746-16082765 | None:intergenic | 35.0% | |
| GTGATATGAAGAACCTTAGT+AGG | + | chr7.4:16082415-16082434 | None:intergenic | 35.0% | |
| TAATCTTATGGATCTGCTCT+TGG | + | chr7.4:16082197-16082216 | None:intergenic | 35.0% | |
| TGTGCATAGAAGAGAATCAA+CGG | + | chr7.4:16083153-16083172 | None:intergenic | 35.0% | |
| !! | AATTTTGAAGGACTCGACTA+CGG | - | chr7.4:16083074-16083093 | MS.gene072375:intron | 35.0% |
| !!! | CTTGATAGTGCTATGTTTTC+TGG | - | chr7.4:16083259-16083278 | MS.gene072375:CDS | 35.0% |
| !!! | TTTTTGCAATTGGTTTGTGC+TGG | - | chr7.4:16082860-16082879 | MS.gene072375:intron | 35.0% |
| AGCCATTGTCATTGAAGTGT+AGG | - | chr7.4:16083297-16083316 | MS.gene072375:CDS | 40.0% | |
| AGGTTCTTCATATCACTACC+AGG | - | chr7.4:16082419-16082438 | MS.gene072375:intron | 40.0% | |
| CACTATCAAGTATTCAGCAG+AGG | + | chr7.4:16083249-16083268 | None:intergenic | 40.0% | |
| CGTATGCCAATTAAGGTTGT+AGG | + | chr7.4:16082928-16082947 | None:intergenic | 40.0% | |
| GCATGTCAAAAATCTCGAGA+AGG | - | chr7.4:16082236-16082255 | MS.gene072375:CDS | 40.0% | |
| GGATAAGCATCTTAGAGTGA+AGG | - | chr7.4:16082375-16082394 | MS.gene072375:intron | 40.0% | |
| GGTACCTGTAACAAGAAGTA+AGG | + | chr7.4:16083374-16083393 | None:intergenic | 40.0% | |
| TACGTGTGAGAGTAAAAGGA+AGG | - | chr7.4:16082944-16082963 | MS.gene072375:intron | 40.0% | |
| TCAAGTATTCAGCAGAGGTT+TGG | + | chr7.4:16083244-16083263 | None:intergenic | 40.0% | |
| TCTCACACGTATGCCAATTA+AGG | + | chr7.4:16082935-16082954 | None:intergenic | 40.0% | |
| TGAGAGGGAACTGTTGAAAT+AGG | - | chr7.4:16082568-16082587 | MS.gene072375:intron | 40.0% | |
| TGATTCTCTTCTATGCACAC+TGG | - | chr7.4:16083154-16083173 | MS.gene072375:intron | 40.0% | |
| TTCAAATCTATCCCAGGTGT+TGG | + | chr7.4:16083395-16083414 | None:intergenic | 40.0% | |
| TTTGACATGCTTGGAGGAAA+GGG | + | chr7.4:16082226-16082245 | None:intergenic | 40.0% | |
| ! | CTCGAGATTTTTGACATGCT+TGG | + | chr7.4:16082235-16082254 | None:intergenic | 40.0% |
| ! | GAGATTTTTGACATGCTTGG+AGG | + | chr7.4:16082232-16082251 | None:intergenic | 40.0% |
| ! | TTTTGACATGCTTGGAGGAA+AGG | + | chr7.4:16082227-16082246 | None:intergenic | 40.0% |
| !! | ATTTTGAAGGACTCGACTAC+GGG | - | chr7.4:16083075-16083094 | MS.gene072375:intron | 40.0% |
| ACCTTAGTAGGCATCCTAAC+AGG | + | chr7.4:16082403-16082422 | None:intergenic | 45.0% | |
| ACGGAGTTCAAATCTATCCC+AGG | + | chr7.4:16083401-16083420 | None:intergenic | 45.0% | |
| CGATAACTCTCTTGTGCACA+CGG | + | chr7.4:16083420-16083439 | None:intergenic | 45.0% | |
| GGCATACGTGTGAGAGTAAA+AGG | - | chr7.4:16082940-16082959 | MS.gene072375:intron | 45.0% | |
| TCCTGTTAGGATGCCTACTA+AGG | - | chr7.4:16082399-16082418 | MS.gene072375:intron | 45.0% | |
| TGTTACAGGTACCAACACCT+GGG | - | chr7.4:16083381-16083400 | MS.gene072375:intron | 45.0% | |
| TTAGAGTGAAGGGTCCTGTT+AGG | - | chr7.4:16082386-16082405 | MS.gene072375:intron | 45.0% | |
| TTGTTACAGGTACCAACACC+TGG | - | chr7.4:16083380-16083399 | MS.gene072375:intron | 45.0% | |
| ! | TTCTATGCACACTGGTTGCA+AGG | - | chr7.4:16083162-16083181 | MS.gene072375:intron | 45.0% |
| !! | CCATAAGCAGGCTAGTTTCA+GGG | + | chr7.4:16082734-16082753 | None:intergenic | 45.0% |
| !! | CGACTACGGGTTGGAATTAA+TGG | - | chr7.4:16083088-16083107 | MS.gene072375:intron | 45.0% |
| !! | GTTTGTGCTGATTTGGTTCG+TGG | - | chr7.4:16082346-16082365 | MS.gene072375:intron | 45.0% |
| !! | TCCATAAGCAGGCTAGTTTC+AGG | + | chr7.4:16082735-16082754 | None:intergenic | 45.0% |
| ACCAGGTTCGATGGTGATAG+AGG | + | chr7.4:16083479-16083498 | None:intergenic | 50.0% | |
| ACCTCTATCACCATCGAACC+TGG | - | chr7.4:16083475-16083494 | MS.gene072375:CDS | 50.0% | |
| ACTACCAGGAAGACTCCTTG+TGG | - | chr7.4:16082433-16082452 | MS.gene072375:intron | 50.0% | |
| AGGAAGACTCCTTGTGGAGA+AGG | - | chr7.4:16082439-16082458 | MS.gene072375:intron | 50.0% | |
| CAACATCTGGGGAACTGTAG+AGG | + | chr7.4:16083444-16083463 | None:intergenic | 50.0% | |
| TCTTGGGATTCCTCCAAACC+AGG | + | chr7.4:16082180-16082199 | None:intergenic | 50.0% | |
| TTCTCCACAAGGAGTCTTCC+TGG | + | chr7.4:16082440-16082459 | None:intergenic | 50.0% | |
| ! | CCCTGAAACTAGCCTGCTTA+TGG | - | chr7.4:16082731-16082750 | MS.gene072375:intron | 50.0% |
| !! | TGATTTGGTTCGTGGCGCTA+AGG | - | chr7.4:16082354-16082373 | MS.gene072375:intron | 50.0% |
| AACCTCGACACCAGGTTCGA+TGG | + | chr7.4:16083488-16083507 | None:intergenic | 55.0% | |
| GAAACCCACCAAGCCTGGTT+TGG | - | chr7.4:16082164-16082183 | MS.gene072375:CDS | 55.0% | |
| GGATTCCTCCAAACCAGGCT+TGG | + | chr7.4:16082175-16082194 | None:intergenic | 55.0% | |
| GTAACCTCAACCTCGACACC+AGG | + | chr7.4:16083496-16083515 | None:intergenic | 55.0% | |
| TGAAGGACTCGACTACGGGT+TGG | - | chr7.4:16083079-16083098 | MS.gene072375:intron | 55.0% | |
| TTCCTCCAAACCAGGCTTGG+TGG | + | chr7.4:16082172-16082191 | None:intergenic | 55.0% | |
| ! | TCCTCCAAACCAGGCTTGGT+GGG | + | chr7.4:16082171-16082190 | None:intergenic | 55.0% |
| GCGATGAAACCCACCAAGCC+TGG | - | chr7.4:16082159-16082178 | MS.gene072375:CDS | 60.0% | |
| ! | CACCATCGAACCTGGTGTCG+AGG | - | chr7.4:16083483-16083502 | MS.gene072375:CDS | 60.0% |
| ! | CGAACCTGGTGTCGAGGTTG+AGG | - | chr7.4:16083489-16083508 | MS.gene072375:CDS | 60.0% |
| !! | ACCCACCAAGCCTGGTTTGG+AGG | - | chr7.4:16082167-16082186 | MS.gene072375:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 16082147 | 16083531 | 16082147 | ID=MS.gene072375 |
| chr7.4 | mRNA | 16082147 | 16083531 | 16082147 | ID=MS.gene072375.t1;Parent=MS.gene072375 |
| chr7.4 | exon | 16083420 | 16083531 | 16083420 | ID=MS.gene072375.t1.exon1;Parent=MS.gene072375.t1 |
| chr7.4 | CDS | 16083420 | 16083531 | 16083420 | ID=cds.MS.gene072375.t1;Parent=MS.gene072375.t1 |
| chr7.4 | exon | 16083218 | 16083331 | 16083218 | ID=MS.gene072375.t1.exon2;Parent=MS.gene072375.t1 |
| chr7.4 | CDS | 16083218 | 16083331 | 16083218 | ID=cds.MS.gene072375.t1;Parent=MS.gene072375.t1 |
| chr7.4 | exon | 16082147 | 16082289 | 16082147 | ID=MS.gene072375.t1.exon3;Parent=MS.gene072375.t1 |
| chr7.4 | CDS | 16082147 | 16082289 | 16082147 | ID=cds.MS.gene072375.t1;Parent=MS.gene072375.t1 |
| Gene Sequence |
| Protein sequence |
