Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059336.t1 | XP_013461535.1 | 98.3 | 345 | 6 | 0 | 1 | 345 | 1 | 345 | 1.70E-181 | 645.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059336.t1 | Q8RXL8 | 78.0 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 5.7e-149 | 528.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059336.t1 | A0A072VBK1 | 98.3 | 345 | 6 | 0 | 1 | 345 | 1 | 345 | 1.2e-181 | 645.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059336 | MS.gene24076 | PPI |
| MS.gene24078 | MS.gene059336 | PPI |
| MS.gene059336 | MS.gene88927 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059336.t1 | MTR_3g094270 | 98.261 | 345 | 6 | 0 | 1 | 345 | 1 | 345 | 0.0 | 688 |
| MS.gene059336.t1 | MTR_3g094260 | 84.527 | 349 | 50 | 1 | 1 | 345 | 1 | 349 | 0.0 | 584 |
| MS.gene059336.t1 | MTR_4g058860 | 66.565 | 329 | 109 | 1 | 1 | 328 | 1 | 329 | 6.08e-155 | 439 |
| MS.gene059336.t1 | MTR_2g094640 | 64.458 | 332 | 114 | 2 | 1 | 328 | 1 | 332 | 2.54e-152 | 432 |
| MS.gene059336.t1 | MTR_8g092190 | 40.780 | 282 | 160 | 4 | 18 | 295 | 21 | 299 | 6.96e-59 | 193 |
| MS.gene059336.t1 | MTR_3g095130 | 37.993 | 279 | 172 | 1 | 18 | 295 | 21 | 299 | 7.86e-59 | 193 |
| MS.gene059336.t1 | MTR_1g026590 | 36.585 | 328 | 197 | 3 | 13 | 329 | 14 | 341 | 3.10e-55 | 184 |
| MS.gene059336.t1 | MTR_1g098240 | 38.516 | 283 | 173 | 1 | 14 | 295 | 17 | 299 | 4.82e-54 | 180 |
| MS.gene059336.t1 | MTR_5g004620 | 36.949 | 295 | 179 | 3 | 5 | 294 | 8 | 300 | 4.76e-51 | 173 |
| MS.gene059336.t1 | MTR_3g095130 | 36.777 | 242 | 151 | 2 | 56 | 295 | 9 | 250 | 2.92e-48 | 164 |
| MS.gene059336.t1 | MTR_1291s0010 | 70.874 | 103 | 30 | 0 | 1 | 103 | 1 | 103 | 3.34e-42 | 142 |
| MS.gene059336.t1 | MTR_5g096310 | 28.783 | 337 | 221 | 4 | 10 | 333 | 55 | 385 | 3.04e-36 | 135 |
| MS.gene059336.t1 | MTR_2g038410 | 27.893 | 337 | 225 | 5 | 3 | 331 | 43 | 369 | 1.43e-32 | 125 |
| MS.gene059336.t1 | MTR_3g072380 | 25.397 | 315 | 217 | 6 | 22 | 325 | 26 | 333 | 5.09e-25 | 103 |
| MS.gene059336.t1 | MTR_1g030320 | 24.921 | 317 | 219 | 6 | 22 | 325 | 25 | 335 | 4.57e-24 | 101 |
| MS.gene059336.t1 | MTR_4g114360 | 25.152 | 330 | 205 | 13 | 22 | 329 | 25 | 334 | 8.74e-15 | 74.7 |
| MS.gene059336.t1 | MTR_0011s0320 | 23.939 | 330 | 211 | 12 | 22 | 329 | 25 | 336 | 1.39e-14 | 74.3 |
| MS.gene059336.t1 | MTR_3g107470 | 24.302 | 358 | 224 | 14 | 1 | 330 | 1 | 339 | 8.30e-14 | 72.0 |
| MS.gene059336.t1 | MTR_2g070400 | 24.269 | 342 | 233 | 11 | 1 | 325 | 1 | 333 | 6.91e-11 | 63.2 |
| MS.gene059336.t1 | MTR_7g110380 | 23.724 | 333 | 228 | 11 | 22 | 341 | 26 | 345 | 8.96e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059336.t1 | AT1G06890 | 77.966 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 0.0 | 537 |
| MS.gene059336.t1 | AT1G06890 | 77.966 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 0.0 | 537 |
| MS.gene059336.t1 | AT2G30460 | 77.429 | 350 | 74 | 1 | 1 | 345 | 1 | 350 | 0.0 | 533 |
| MS.gene059336.t1 | AT2G30460 | 77.429 | 350 | 74 | 1 | 1 | 345 | 1 | 350 | 0.0 | 533 |
| MS.gene059336.t1 | AT1G06890 | 80.896 | 335 | 64 | 0 | 1 | 335 | 1 | 335 | 0.0 | 529 |
| MS.gene059336.t1 | AT1G06890 | 80.896 | 335 | 64 | 0 | 1 | 335 | 1 | 335 | 0.0 | 529 |
| MS.gene059336.t1 | AT2G30460 | 73.112 | 331 | 82 | 2 | 20 | 345 | 1 | 329 | 9.87e-178 | 496 |
| MS.gene059336.t1 | AT2G30460 | 73.112 | 331 | 82 | 2 | 20 | 345 | 1 | 329 | 9.87e-178 | 496 |
| MS.gene059336.t1 | AT2G30460 | 73.112 | 331 | 82 | 2 | 20 | 345 | 1 | 329 | 9.87e-178 | 496 |
| MS.gene059336.t1 | AT2G28315 | 63.848 | 343 | 119 | 2 | 1 | 339 | 1 | 342 | 4.79e-154 | 436 |
| MS.gene059336.t1 | AT2G28315 | 66.978 | 321 | 94 | 1 | 1 | 321 | 1 | 309 | 2.42e-152 | 431 |
| MS.gene059336.t1 | AT2G30460 | 83.333 | 222 | 37 | 0 | 1 | 222 | 1 | 222 | 1.81e-119 | 348 |
| MS.gene059336.t1 | AT4G09810 | 39.873 | 316 | 181 | 4 | 13 | 321 | 16 | 329 | 3.49e-66 | 212 |
| MS.gene059336.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 1.21e-61 | 200 |
| MS.gene059336.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 1.21e-61 | 200 |
| MS.gene059336.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 1.21e-61 | 200 |
| MS.gene059336.t1 | AT1G21070 | 38.591 | 298 | 177 | 3 | 12 | 305 | 16 | 311 | 4.05e-59 | 194 |
| MS.gene059336.t1 | AT5G42420 | 35.350 | 314 | 197 | 2 | 12 | 319 | 16 | 329 | 1.02e-58 | 193 |
| MS.gene059336.t1 | AT1G76670 | 36.991 | 319 | 195 | 3 | 5 | 319 | 8 | 324 | 1.84e-58 | 192 |
| MS.gene059336.t1 | AT1G76670 | 36.991 | 319 | 195 | 3 | 5 | 319 | 8 | 324 | 1.84e-58 | 192 |
| MS.gene059336.t1 | AT4G39390 | 35.238 | 315 | 199 | 3 | 12 | 321 | 16 | 330 | 2.52e-57 | 189 |
| MS.gene059336.t1 | AT4G39390 | 35.238 | 315 | 199 | 3 | 12 | 321 | 20 | 334 | 2.64e-57 | 189 |
| MS.gene059336.t1 | AT4G39390 | 35.238 | 315 | 199 | 3 | 12 | 321 | 20 | 334 | 2.64e-57 | 189 |
| MS.gene059336.t1 | AT4G09810 | 39.464 | 261 | 151 | 3 | 66 | 321 | 14 | 272 | 4.65e-56 | 184 |
| MS.gene059336.t1 | AT4G09810 | 41.905 | 210 | 118 | 2 | 13 | 220 | 16 | 223 | 5.66e-45 | 154 |
| MS.gene059336.t1 | AT5G55950 | 29.240 | 342 | 220 | 5 | 10 | 335 | 56 | 391 | 1.96e-39 | 144 |
| MS.gene059336.t1 | AT5G55950 | 29.167 | 336 | 216 | 5 | 15 | 337 | 1 | 327 | 1.11e-38 | 140 |
| MS.gene059336.t1 | AT5G57100 | 29.655 | 290 | 196 | 2 | 10 | 295 | 63 | 348 | 4.36e-36 | 135 |
| MS.gene059336.t1 | AT5G55950 | 29.097 | 299 | 196 | 4 | 46 | 337 | 20 | 309 | 3.77e-35 | 130 |
| MS.gene059336.t1 | AT5G55950 | 30.992 | 242 | 155 | 3 | 10 | 245 | 56 | 291 | 2.77e-28 | 112 |
| MS.gene059336.t1 | AT5G42420 | 27.389 | 314 | 155 | 7 | 12 | 319 | 16 | 262 | 4.67e-27 | 108 |
| MS.gene059336.t1 | AT5G57100 | 28.750 | 240 | 163 | 2 | 10 | 245 | 63 | 298 | 6.48e-27 | 108 |
| MS.gene059336.t1 | AT5G57100 | 30.303 | 198 | 134 | 1 | 98 | 295 | 40 | 233 | 4.17e-25 | 102 |
| MS.gene059336.t1 | AT5G57100 | 31.395 | 172 | 114 | 1 | 10 | 177 | 63 | 234 | 1.11e-21 | 93.6 |
| MS.gene059336.t1 | AT1G77610 | 24.444 | 315 | 221 | 5 | 22 | 325 | 20 | 328 | 3.16e-20 | 90.5 |
| MS.gene059336.t1 | AT1G21870 | 24.419 | 344 | 245 | 5 | 1 | 332 | 1 | 341 | 9.13e-20 | 89.4 |
| MS.gene059336.t1 | AT5G11230 | 25.070 | 359 | 224 | 12 | 9 | 330 | 1 | 351 | 1.09e-17 | 83.6 |
| MS.gene059336.t1 | AT5G25400 | 26.111 | 360 | 231 | 13 | 1 | 338 | 1 | 347 | 1.88e-17 | 82.8 |
| MS.gene059336.t1 | AT2G25520 | 25.360 | 347 | 215 | 11 | 1 | 319 | 1 | 331 | 4.68e-16 | 78.6 |
| MS.gene059336.t1 | AT4G32390 | 25.479 | 365 | 237 | 15 | 1 | 345 | 1 | 350 | 2.45e-15 | 76.6 |
| MS.gene059336.t1 | AT5G05820 | 23.826 | 298 | 208 | 4 | 11 | 295 | 11 | 302 | 3.76e-11 | 63.5 |
| MS.gene059336.t1 | AT3G11320 | 24.497 | 298 | 206 | 6 | 11 | 295 | 11 | 302 | 5.83e-11 | 63.2 |
Find 49 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGTACATTTCTTGTAAT+TGG | 0.131705 | 3.4:-85893096 | MS.gene059336:CDS |
| TTCTCTTGCAATCCTACTTT+TGG | 0.149841 | 3.4:-85894035 | MS.gene059336:CDS |
| GTTGATAATCGGACCATATT+TGG | 0.190871 | 3.4:-85893300 | MS.gene059336:CDS |
| GAGAAACATACTAGGAATTT+TGG | 0.218917 | 3.4:-85892977 | MS.gene059336:CDS |
| GTAGGATTGCAAGAGAAAAT+TGG | 0.229086 | 3.4:+85894041 | None:intergenic |
| CCCCTCATTAACGTGGAAAA+TGG | 0.263001 | 3.4:-85892743 | MS.gene059336:CDS |
| ACATGTCTTGTACTGGCTTT+TGG | 0.278525 | 3.4:-85893030 | MS.gene059336:CDS |
| CAGAAAGCGGTGATGGGATT+TGG | 0.280505 | 3.4:-85895189 | MS.gene059336:CDS |
| AACAAGGTTGCTGCCTGATA+TGG | 0.285190 | 3.4:+85893320 | None:intergenic |
| TGGGTTGTTAAATTTGAGTC+TGG | 0.300848 | 3.4:-85895145 | MS.gene059336:CDS |
| AGTATGTTTCTCCAACTAAA+AGG | 0.331771 | 3.4:+85892988 | None:intergenic |
| TAATTCTGTTGGATTCTATC+AGG | 0.347592 | 3.4:-85895118 | MS.gene059336:intron |
| TTCATGTCTTATTTCTATCT+CGG | 0.391540 | 3.4:-85893124 | MS.gene059336:CDS |
| ATATCAATCATGTCCATATC+AGG | 0.392944 | 3.4:-85893333 | MS.gene059336:CDS |
| CCAAGGACTTGATAGGTAAC+TGG | 0.410728 | 3.4:+85893063 | None:intergenic |
| TAGGATTGCAAGAGAAAATT+GGG | 0.413584 | 3.4:+85894042 | None:intergenic |
| GGGTTGTTAAATTTGAGTCT+GGG | 0.441493 | 3.4:-85895144 | MS.gene059336:CDS |
| GCAGCAACCTTGTTGATAAT+CGG | 0.448341 | 3.4:-85893311 | MS.gene059336:CDS |
| ATCACCGCTTTCTGCTCAAA+AGG | 0.450801 | 3.4:+85895198 | None:intergenic |
| CCAGTTACCTATCAAGTCCT+TGG | 0.462236 | 3.4:-85893063 | MS.gene059336:CDS |
| TTCTGAATGGAATCTCGATT+GGG | 0.468543 | 3.4:-85895164 | MS.gene059336:CDS |
| ATTCTGAATGGAATCTCGAT+TGG | 0.469832 | 3.4:-85895165 | MS.gene059336:CDS |
| GTGCACCGATAGTTCCCAAT+TGG | 0.471388 | 3.4:+85896348 | None:intergenic |
| GATTTACAACTCAATGCGTT+GGG | 0.485909 | 3.4:-85893989 | MS.gene059336:CDS |
| CAGCTACAACATTGACAAGT+TGG | 0.486149 | 3.4:-85895284 | MS.gene059336:CDS |
| AATTCCGTGTACTATTCTAC+TGG | 0.494484 | 3.4:-85894976 | MS.gene059336:CDS |
| CAATTCCAACACCCAAAAGT+AGG | 0.494991 | 3.4:+85894023 | None:intergenic |
| TGATTTACAACTCAATGCGT+TGG | 0.498236 | 3.4:-85893990 | MS.gene059336:CDS |
| TTTAGTTGGAGAAACATACT+AGG | 0.501343 | 3.4:-85892985 | MS.gene059336:CDS |
| ATGGGATTTGGAATTCTGAA+TGG | 0.502641 | 3.4:-85895177 | MS.gene059336:CDS |
| TCTTAAGACATGTCTTGTAC+TGG | 0.504547 | 3.4:-85893037 | MS.gene059336:CDS |
| AACTGCAGCACAAGCATCAC+AGG | 0.509626 | 3.4:-85892887 | MS.gene059336:intron |
| GATTCTCAAGAATGCAAAAG+TGG | 0.512823 | 3.4:+85892926 | None:intergenic |
| AAGATGTCCAAGGACTTGAT+AGG | 0.521804 | 3.4:+85893056 | None:intergenic |
| AAATTCCAATTGGGAACTAT+CGG | 0.532072 | 3.4:-85896353 | MS.gene059336:CDS |
| ACAAAGAATAAGATGGGTGA+TGG | 0.542736 | 3.4:-85896380 | None:intergenic |
| ATGCATTCAGATGACAAAGT+TGG | 0.545812 | 3.4:-85895003 | MS.gene059336:intron |
| TTTGAGCAGAAAGCGGTGAT+GGG | 0.547487 | 3.4:-85895195 | MS.gene059336:CDS |
| GAAGTACAATATTGAACAAG+AGG | 0.558506 | 3.4:-85892721 | MS.gene059336:CDS |
| ATTCTCAAGAATGCAAAAGT+GGG | 0.604113 | 3.4:+85892927 | None:intergenic |
| ATCTGATCCCCTCATTAACG+TGG | 0.611663 | 3.4:-85892750 | MS.gene059336:CDS |
| CAAGTACACAACACAAGTGA+CGG | 0.633666 | 3.4:-85893243 | MS.gene059336:intron |
| GTCGATTGTGATTTGTAACA+AGG | 0.635859 | 3.4:-85896300 | MS.gene059336:CDS |
| ATACATAAGCATCCCAACCA+TGG | 0.648173 | 3.4:+85892951 | None:intergenic |
| CGGTGCACTGAGTCTATCTG+TGG | 0.660483 | 3.4:-85896333 | MS.gene059336:CDS |
| AATAAGACATGAAAGAACGA+TGG | 0.661070 | 3.4:+85893134 | None:intergenic |
| ATATGGTCCGATTATCAACA+AGG | 0.669721 | 3.4:+85893304 | None:intergenic |
| ATCTCCAGTAGAATAGTACA+CGG | 0.681945 | 3.4:+85894972 | None:intergenic |
| GACATGTCTTAAGATGTCCA+AGG | 0.714030 | 3.4:+85893046 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAATATATGATATT+AGG | + | chr3.4:85893435-85893454 | None:intergenic | 10.0% |
| !! | TAAAAGTAATATTGATAAAA+TGG | + | chr3.4:85894772-85894791 | None:intergenic | 10.0% |
| !!! | AAAAATGATAATGATAATTT+TGG | + | chr3.4:85894628-85894647 | None:intergenic | 10.0% |
| !!! | TAAATAATTTAATTTAAACG+AGG | - | chr3.4:85892949-85892968 | MS.gene059336:CDS | 10.0% |
| !! | TAAACACAAAAAATAGATAA+TGG | + | chr3.4:85894416-85894435 | None:intergenic | 15.0% |
| !! | TAAATTATTAAGGTTATTAC+TGG | - | chr3.4:85894830-85894849 | MS.gene059336:intron | 15.0% |
| !! | TCGTTAAAAATAATTTCATA+AGG | + | chr3.4:85895244-85895263 | None:intergenic | 15.0% |
| !!! | ACTTATATTTTCTCTTATTA+TGG | - | chr3.4:85895427-85895446 | MS.gene059336:intron | 15.0% |
| !!! | ATTATCATTATCATTTTTTC+TGG | - | chr3.4:85894630-85894649 | MS.gene059336:intron | 15.0% |
| !!! | ATTTATTTTAATCGACAATA+AGG | + | chr3.4:85893194-85893213 | None:intergenic | 15.0% |
| !!! | TTTTTATTTGCAATTTGATA+TGG | - | chr3.4:85892836-85892855 | MS.gene059336:intron | 15.0% |
| !! | AAAATATTAAAAAGGAACGA+AGG | - | chr3.4:85894929-85894948 | MS.gene059336:intron | 20.0% |
| !! | AACTATAAAATGTTTGAGTA+AGG | + | chr3.4:85894487-85894506 | None:intergenic | 20.0% |
| !! | ACAAAAGTAACAAAGTTAAT+TGG | - | chr3.4:85894872-85894891 | MS.gene059336:intron | 20.0% |
| !! | CAAAATAAAATCTATGAATG+CGG | + | chr3.4:85893613-85893632 | None:intergenic | 20.0% |
| !! | CAGTAAATACTTTAATAGTT+AGG | + | chr3.4:85893530-85893549 | None:intergenic | 20.0% |
| !! | GAAATTGAGATAATTGTAAA+TGG | + | chr3.4:85894231-85894250 | None:intergenic | 20.0% |
| !! | TTATCGTCTATATACATTTA+TGG | - | chr3.4:85894149-85894168 | MS.gene059336:intron | 20.0% |
| !! | TTTAGTACATTTCTTGTAAT+TGG | - | chr3.4:85895963-85895982 | MS.gene059336:intron | 20.0% |
| !!! | ATATAAGATCTTTTTTGTTC+CGG | + | chr3.4:85893258-85893277 | None:intergenic | 20.0% |
| !!! | ATTAAAGTATTTACTGGATT+TGG | - | chr3.4:85893534-85893553 | MS.gene059336:intron | 20.0% |
| !!! | CTAACTATTAAAGTATTTAC+TGG | - | chr3.4:85893528-85893547 | MS.gene059336:intron | 20.0% |
| !!! | GCATTCATAGATTTTATTTT+GGG | - | chr3.4:85893612-85893631 | MS.gene059336:intron | 20.0% |
| !!! | TATCATAAGAGCAATTTTAT+AGG | + | chr3.4:85895321-85895340 | None:intergenic | 20.0% |
| !!! | TTAAAGTATTTACTGGATTT+GGG | - | chr3.4:85893535-85893554 | MS.gene059336:intron | 20.0% |
| ! | AAATGTATATAGACGATAAG+AGG | + | chr3.4:85894148-85894167 | None:intergenic | 25.0% |
| ! | ACAAAGTTAATTGGTTACTT+TGG | - | chr3.4:85894881-85894900 | MS.gene059336:intron | 25.0% |
| ! | ATTAGAACTTATCATCAACA+AGG | + | chr3.4:85893142-85893161 | None:intergenic | 25.0% |
| ! | CCATGATAAAACTAATTGAA+TGG | + | chr3.4:85893493-85893512 | None:intergenic | 25.0% |
| ! | TAATATTGATAAAATGGCAG+AGG | + | chr3.4:85894766-85894785 | None:intergenic | 25.0% |
| ! | TATATGATATTAGGTCACAT+CGG | + | chr3.4:85893426-85893445 | None:intergenic | 25.0% |
| ! | TATTTGCAATTTGATATGGT+TGG | - | chr3.4:85892840-85892859 | MS.gene059336:intron | 25.0% |
| ! | TCTCCATTTCTCAAAATAAA+TGG | + | chr3.4:85894460-85894479 | None:intergenic | 25.0% |
| !! | AATCCTTTATTGTTGTTGTT+TGG | - | chr3.4:85893993-85894012 | MS.gene059336:CDS | 25.0% |
| !! | ACATAATTTTTCTGCAAATG+CGG | + | chr3.4:85894705-85894724 | None:intergenic | 25.0% |
| !! | AGTACATTGCAATTCATTTT+TGG | - | chr3.4:85892790-85892809 | MS.gene059336:intron | 25.0% |
| !! | CAAGAGTGAAATTTTCTTTA+AGG | + | chr3.4:85895149-85895168 | None:intergenic | 25.0% |
| !! | CTTTTTCCTTATTCCAAATA+GGG | + | chr3.4:85896366-85896385 | None:intergenic | 25.0% |
| !! | GTGAGAATTTTATCCAAATA+TGG | + | chr3.4:85895775-85895794 | None:intergenic | 25.0% |
| !! | TCTTTTTCCTTATTCCAAAT+AGG | + | chr3.4:85896367-85896386 | None:intergenic | 25.0% |
| !! | TTGATAGATTTGAGATTCTT+TGG | - | chr3.4:85892973-85892992 | MS.gene059336:CDS | 25.0% |
| !! | TTTTATATCCTACGTAGTTA+AGG | - | chr3.4:85893686-85893705 | MS.gene059336:intron | 25.0% |
| !! | TTTTTATGCATATGTTCCAA+GGG | + | chr3.4:85893352-85893371 | None:intergenic | 25.0% |
| !! | TTTTTCCTTATTCCAAATAG+GGG | + | chr3.4:85896365-85896384 | None:intergenic | 25.0% |
| !!! | AACTGCTCTAGTTTTTAAAA+TGG | - | chr3.4:85895171-85895190 | MS.gene059336:CDS | 25.0% |
| !!! | AAGAAACCTTAAACTTTTTC+TGG | + | chr3.4:85895693-85895712 | None:intergenic | 25.0% |
| !!! | ACTCCATTTATTTTGAGAAA+TGG | - | chr3.4:85894454-85894473 | MS.gene059336:intron | 25.0% |
| !!! | ATCCTTTATTGTTGTTGTTT+GGG | - | chr3.4:85893994-85894013 | MS.gene059336:CDS | 25.0% |
| !!! | CCATTCAATTAGTTTTATCA+TGG | - | chr3.4:85893490-85893509 | MS.gene059336:intron | 25.0% |
| !!! | CGCATTCATAGATTTTATTT+TGG | - | chr3.4:85893611-85893630 | MS.gene059336:intron | 25.0% |
| !!! | TAAAAGAGTGCTTACATATA+AGG | + | chr3.4:85894308-85894327 | None:intergenic | 25.0% |
| !!! | TTCATGTCTTATTTCTATCT+CGG | - | chr3.4:85895935-85895954 | MS.gene059336:intron | 25.0% |
| !!! | TTTTTTATGCATATGTTCCA+AGG | + | chr3.4:85893353-85893372 | None:intergenic | 25.0% |
| AAATATGTTGCTAACAACAC+AGG | - | chr3.4:85895265-85895284 | MS.gene059336:CDS | 30.0% | |
| AAATTCCAATTGGGAACTAT+CGG | - | chr3.4:85892706-85892725 | MS.gene059336:CDS | 30.0% | |
| AATAAGACATGAAAGAACGA+TGG | + | chr3.4:85895928-85895947 | None:intergenic | 30.0% | |
| AATATGTTGCTAACAACACA+GGG | - | chr3.4:85895266-85895285 | MS.gene059336:CDS | 30.0% | |
| AATTTATCCTATTAGTCCCT+TGG | - | chr3.4:85893333-85893352 | MS.gene059336:CDS | 30.0% | |
| AGTATGTTTCTCCAACTAAA+AGG | + | chr3.4:85896074-85896093 | None:intergenic | 30.0% | |
| ATAAGTTTGAATGTTCGTTG+AGG | - | chr3.4:85893106-85893125 | MS.gene059336:CDS | 30.0% | |
| ATATCAATCATGTCCATATC+AGG | - | chr3.4:85895726-85895745 | MS.gene059336:intron | 30.0% | |
| ATATGTCATCTCACATACAA+AGG | + | chr3.4:85895389-85895408 | None:intergenic | 30.0% | |
| ATTCTCAAGAATGCAAAAGT+GGG | + | chr3.4:85896135-85896154 | None:intergenic | 30.0% | |
| CATTTCATTTGAGCATGATT+TGG | - | chr3.4:85895538-85895557 | MS.gene059336:intron | 30.0% | |
| GAAGTACAATATTGAACAAG+AGG | - | chr3.4:85896338-85896357 | MS.gene059336:CDS | 30.0% | |
| GAGACTTGTGAATATCATAA+AGG | + | chr3.4:85894577-85894596 | None:intergenic | 30.0% | |
| GATGGAGAAAAATTCCAATT+GGG | - | chr3.4:85892697-85892716 | MS.gene059336:CDS | 30.0% | |
| TAAGTTTGAATGTTCGTTGA+GGG | - | chr3.4:85893107-85893126 | MS.gene059336:CDS | 30.0% | |
| TAATTCTGTTGGATTCTATC+AGG | - | chr3.4:85893941-85893960 | MS.gene059336:CDS | 30.0% | |
| TAGGATTGCAAGAGAAAATT+GGG | + | chr3.4:85895020-85895039 | None:intergenic | 30.0% | |
| TATGTCATCTCACATACAAA+GGG | + | chr3.4:85895388-85895407 | None:intergenic | 30.0% | |
| TGATGGAGAAAAATTCCAAT+TGG | - | chr3.4:85892696-85892715 | MS.gene059336:CDS | 30.0% | |
| TGTGTCTTTGTCTTTCTAAA+TGG | + | chr3.4:85894256-85894275 | None:intergenic | 30.0% | |
| TTAGATATGTAGACGTCTAA+AGG | - | chr3.4:85893725-85893744 | MS.gene059336:intron | 30.0% | |
| TTTACAAGACATCGTGTAAT+TGG | - | chr3.4:85894525-85894544 | MS.gene059336:intron | 30.0% | |
| TTTAGTTGGAGAAACATACT+AGG | - | chr3.4:85896074-85896093 | MS.gene059336:intron | 30.0% | |
| ! | GAGAAACATACTAGGAATTT+TGG | - | chr3.4:85896082-85896101 | MS.gene059336:intron | 30.0% |
| ! | TACATTTTGTTCTCTTCATG+TGG | - | chr3.4:85893809-85893828 | MS.gene059336:intron | 30.0% |
| ! | TCTACATATCTAAGACAAGT+AGG | + | chr3.4:85893718-85893737 | None:intergenic | 30.0% |
| ! | TGTAAGCACTCTTTTATTAC+AGG | - | chr3.4:85894312-85894331 | MS.gene059336:intron | 30.0% |
| ! | TTTACCAATAAAAAAGCACG+AGG | + | chr3.4:85896227-85896246 | None:intergenic | 30.0% |
| ! | TTTTCCTTATTCCAAATAGG+GGG | + | chr3.4:85896364-85896383 | None:intergenic | 30.0% |
| ! | TTTTTCTTGGCAAGAAATTC+AGG | - | chr3.4:85894112-85894131 | MS.gene059336:intron | 30.0% |
| !! | AACCTTAAACTTTTTCTGGA+TGG | + | chr3.4:85895689-85895708 | None:intergenic | 30.0% |
| !! | TTCTTTGGAATCACATCAAA+TGG | - | chr3.4:85892988-85893007 | MS.gene059336:CDS | 30.0% |
| !!! | ATGAGTTTTTTTTTCTTCCG+TGG | - | chr3.4:85892877-85892896 | MS.gene059336:intron | 30.0% |
| !!! | GACTTGCACTATTTTTTGTT+AGG | - | chr3.4:85893061-85893080 | MS.gene059336:CDS | 30.0% |
| !!! | TATTCCTCGTGCTTTTTTAT+TGG | - | chr3.4:85896220-85896239 | MS.gene059336:intron | 30.0% |
| AATTCCGTGTACTATTCTAC+TGG | - | chr3.4:85894083-85894102 | MS.gene059336:intron | 35.0% | |
| ATATGGTCCGATTATCAACA+AGG | + | chr3.4:85895758-85895777 | None:intergenic | 35.0% | |
| ATATGTTCCAAGGGACTAAT+AGG | + | chr3.4:85893343-85893362 | None:intergenic | 35.0% | |
| ATCATGAAAAAGCAGATGCA+TGG | + | chr3.4:85892925-85892944 | None:intergenic | 35.0% | |
| ATCTCCAGTAGAATAGTACA+CGG | + | chr3.4:85894090-85894109 | None:intergenic | 35.0% | |
| ATGCATTCAGATGACAAAGT+TGG | - | chr3.4:85894056-85894075 | MS.gene059336:intron | 35.0% | |
| ATTCTGAATGGAATCTCGAT+TGG | - | chr3.4:85893894-85893913 | MS.gene059336:intron | 35.0% | |
| CACCATCCAGAAAAAGTTTA+AGG | - | chr3.4:85895684-85895703 | MS.gene059336:intron | 35.0% | |
| CCTGAAAACATTGGAAAACA+AGG | + | chr3.4:85896276-85896295 | None:intergenic | 35.0% | |
| GATTCTCAAGAATGCAAAAG+TGG | + | chr3.4:85896136-85896155 | None:intergenic | 35.0% | |
| GATTTACAACTCAATGCGTT+GGG | - | chr3.4:85895070-85895089 | MS.gene059336:intron | 35.0% | |
| GGGTTGTTAAATTTGAGTCT+GGG | - | chr3.4:85893915-85893934 | MS.gene059336:intron | 35.0% | |
| GTAGACGTCTAAAGGTTTAA+TGG | - | chr3.4:85893733-85893752 | MS.gene059336:intron | 35.0% | |
| GTAGGATTGCAAGAGAAAAT+TGG | + | chr3.4:85895021-85895040 | None:intergenic | 35.0% | |
| GTCTTTGTCTTTCTAAATGG+AGG | + | chr3.4:85894253-85894272 | None:intergenic | 35.0% | |
| TATGATATTCACAAGTCTCG+AGG | - | chr3.4:85894578-85894597 | MS.gene059336:intron | 35.0% | |
| TCTTAAGACATGTCTTGTAC+TGG | - | chr3.4:85896022-85896041 | MS.gene059336:intron | 35.0% | |
| TGATTTACAACTCAATGCGT+TGG | - | chr3.4:85895069-85895088 | MS.gene059336:intron | 35.0% | |
| TGCCCAAACAACAACAATAA+AGG | + | chr3.4:85893999-85894018 | None:intergenic | 35.0% | |
| TGGGTTGTTAAATTTGAGTC+TGG | - | chr3.4:85893914-85893933 | MS.gene059336:intron | 35.0% | |
| TTCTGAATGGAATCTCGATT+GGG | - | chr3.4:85893895-85893914 | MS.gene059336:intron | 35.0% | |
| ! | ACATATCTAAGACAAGTAGG+AGG | + | chr3.4:85893715-85893734 | None:intergenic | 35.0% |
| ! | AGAGTGCTTACATATAAGGA+CGG | + | chr3.4:85894304-85894323 | None:intergenic | 35.0% |
| ! | AGAGTGCTTACATATATGGA+CGG | - | chr3.4:85894338-85894357 | MS.gene059336:intron | 35.0% |
| ! | ATGGGATTTGGAATTCTGAA+TGG | - | chr3.4:85893882-85893901 | MS.gene059336:intron | 35.0% |
| ! | CTACTGGAGATTCTTTTTCT+TGG | - | chr3.4:85894099-85894118 | MS.gene059336:intron | 35.0% |
| ! | GTCGATTGTGATTTGTAACA+AGG | - | chr3.4:85892759-85892778 | MS.gene059336:CDS | 35.0% |
| ! | TCATCCATGATTTGTACATC+AGG | - | chr3.4:85893229-85893248 | MS.gene059336:intron | 35.0% |
| ! | TCCATTTTCCACGTTAATGA+GGG | + | chr3.4:85896320-85896339 | None:intergenic | 35.0% |
| ! | TTCCATTTTCCACGTTAATG+AGG | + | chr3.4:85896321-85896340 | None:intergenic | 35.0% |
| ! | TTCTCTTGCAATCCTACTTT+TGG | - | chr3.4:85895024-85895043 | MS.gene059336:intron | 35.0% |
| ! | TTGTACGTGATCCTTTTAGT+TGG | - | chr3.4:85896060-85896079 | MS.gene059336:intron | 35.0% |
| !! | AATGTTTTCAGGCAAGAGAA+GGG | - | chr3.4:85896284-85896303 | MS.gene059336:CDS | 35.0% |
| !! | GCAAAGAGTGCTTACATATA+TGG | - | chr3.4:85894334-85894353 | MS.gene059336:intron | 35.0% |
| !! | GTTGATAATCGGACCATATT+TGG | - | chr3.4:85895759-85895778 | MS.gene059336:intron | 35.0% |
| !! | TCTCTTGCAATCCTACTTTT+GGG | - | chr3.4:85895025-85895044 | MS.gene059336:intron | 35.0% |
| !!! | AGTCTGGGTTTTAATTCTGT+TGG | - | chr3.4:85893930-85893949 | MS.gene059336:intron | 35.0% |
| !!! | CCTTGTTTTCCAATGTTTTC+AGG | - | chr3.4:85896273-85896292 | MS.gene059336:CDS | 35.0% |
| !!! | GATTTTATTTTGGGCACAAG+AGG | - | chr3.4:85893621-85893640 | MS.gene059336:intron | 35.0% |
| AAATGCGGCGAAAGAAACAT+AGG | + | chr3.4:85894690-85894709 | None:intergenic | 40.0% | |
| AAGATGTCCAAGGACTTGAT+AGG | + | chr3.4:85896006-85896025 | None:intergenic | 40.0% | |
| AATGCGGCGAAAGAAACATA+GGG | + | chr3.4:85894689-85894708 | None:intergenic | 40.0% | |
| ATACATAAGCATCCCAACCA+TGG | + | chr3.4:85896111-85896130 | None:intergenic | 40.0% | |
| CAAGTACACAACACAAGTGA+CGG | - | chr3.4:85895816-85895835 | MS.gene059336:intron | 40.0% | |
| CAATTCCAACACCCAAAAGT+AGG | + | chr3.4:85895039-85895058 | None:intergenic | 40.0% | |
| CAGCTACAACATTGACAAGT+TGG | - | chr3.4:85893775-85893794 | MS.gene059336:intron | 40.0% | |
| CTTCTCTTGCCTGAAAACAT+TGG | + | chr3.4:85896285-85896304 | None:intergenic | 40.0% | |
| GACATGTCTTAAGATGTCCA+AGG | + | chr3.4:85896016-85896035 | None:intergenic | 40.0% | |
| GCTATGTTGACCACTTGAAA+AGG | - | chr3.4:85895575-85895594 | MS.gene059336:intron | 40.0% | |
| TCACATACAAAGGGAAGCTT+GGG | + | chr3.4:85895379-85895398 | None:intergenic | 40.0% | |
| TGCTTACATATATGGACGGA+TGG | - | chr3.4:85894342-85894361 | MS.gene059336:intron | 40.0% | |
| ! | CCATTTTCCACGTTAATGAG+GGG | + | chr3.4:85896319-85896338 | None:intergenic | 40.0% |
| ! | GGGCTCTTTCTTATCTTTTC+TGG | - | chr3.4:85895090-85895109 | MS.gene059336:intron | 40.0% |
| !! | AACCTATCGTCCTTTTCAAG+TGG | + | chr3.4:85895588-85895607 | None:intergenic | 40.0% |
| !! | ACTAGGAATTTTGGTAGCCA+TGG | - | chr3.4:85896091-85896110 | MS.gene059336:intron | 40.0% |
| !! | ATGTTTTCAGGCAAGAGAAG+GGG | - | chr3.4:85896285-85896304 | MS.gene059336:CDS | 40.0% |
| !! | CAATGTTTTCAGGCAAGAGA+AGG | - | chr3.4:85896283-85896302 | MS.gene059336:CDS | 40.0% |
| !! | GAATTTTGGTAGCCATGGTT+GGG | - | chr3.4:85896096-85896115 | MS.gene059336:intron | 40.0% |
| !! | GCAGCAACCTTGTTGATAAT+CGG | - | chr3.4:85895748-85895767 | MS.gene059336:intron | 40.0% |
| !!! | ACATGTCTTGTACTGGCTTT+TGG | - | chr3.4:85896029-85896048 | MS.gene059336:intron | 40.0% |
| AACAAGGTTGCTGCCTGATA+TGG | + | chr3.4:85895742-85895761 | None:intergenic | 45.0% | |
| ACATGCAGTAACAGTCACCA+CGG | + | chr3.4:85892897-85892916 | None:intergenic | 45.0% | |
| ATCACCGCTTTCTGCTCAAA+AGG | + | chr3.4:85893864-85893883 | None:intergenic | 45.0% | |
| ATCTGATCCCCTCATTAACG+TGG | - | chr3.4:85896309-85896328 | MS.gene059336:CDS | 45.0% | |
| CCAAGGACTTGATAGGTAAC+TGG | + | chr3.4:85895999-85896018 | None:intergenic | 45.0% | |
| CCAGTTACCTATCAAGTCCT+TGG | - | chr3.4:85895996-85896015 | MS.gene059336:intron | 45.0% | |
| CCCCTCATTAACGTGGAAAA+TGG | - | chr3.4:85896316-85896335 | MS.gene059336:CDS | 45.0% | |
| CTCACATACAAAGGGAAGCT+TGG | + | chr3.4:85895380-85895399 | None:intergenic | 45.0% | |
| GACCACTTGAAAAGGACGAT+AGG | - | chr3.4:85895583-85895602 | MS.gene059336:intron | 45.0% | |
| GCTGCCTGATGTACAAATCA+TGG | + | chr3.4:85893236-85893255 | None:intergenic | 45.0% | |
| GTGCTTACATATAAGGACGG+AGG | + | chr3.4:85894301-85894320 | None:intergenic | 45.0% | |
| TTTGAGCAGAAAGCGGTGAT+GGG | - | chr3.4:85893864-85893883 | MS.gene059336:intron | 45.0% | |
| ! | CAAGCCTTTTGAGCAGAAAG+CGG | - | chr3.4:85893857-85893876 | MS.gene059336:intron | 45.0% |
| ! | TGATTTGTACATCAGGCAGC+CGG | - | chr3.4:85893236-85893255 | MS.gene059336:intron | 45.0% |
| ! | TTTTGAGCAGAAAGCGGTGA+TGG | - | chr3.4:85893863-85893882 | MS.gene059336:intron | 45.0% |
| !! | AGGAGTATCGAGATGCTTAC+TGG | - | chr3.4:85893081-85893100 | MS.gene059336:CDS | 45.0% |
| !! | GCAATCCTACTTTTGGGTGT+TGG | - | chr3.4:85895031-85895050 | MS.gene059336:intron | 45.0% |
| !! | GGAATTTTGGTAGCCATGGT+TGG | - | chr3.4:85896095-85896114 | MS.gene059336:intron | 45.0% |
| !! | AAAAATACAAAATATTAAAA+AGG | - | chr3.4:85894921-85894940 | MS.gene059336:intron | 5.0% |
| !! | TACAATATATTAAATTATTA+AGG | - | chr3.4:85894820-85894839 | MS.gene059336:intron | 5.0% |
| AACTGCAGCACAAGCATCAC+AGG | - | chr3.4:85896172-85896191 | MS.gene059336:intron | 50.0% | |
| GGAGGAAGCCTTAACTACGT+AGG | + | chr3.4:85893697-85893716 | None:intergenic | 50.0% | |
| TGAACAAGAGGCCCCCTATT+TGG | - | chr3.4:85896350-85896369 | MS.gene059336:CDS | 50.0% | |
| ! | GAGGCCCCCTATTTGGAATA+AGG | - | chr3.4:85896357-85896376 | MS.gene059336:CDS | 50.0% |
| ! | GTGCACCGATAGTTCCCAAT+TGG | + | chr3.4:85892714-85892733 | None:intergenic | 50.0% |
| !! | CAGAAAGCGGTGATGGGATT+TGG | - | chr3.4:85893870-85893889 | MS.gene059336:intron | 50.0% |
| CGGTGCACTGAGTCTATCTG+TGG | - | chr3.4:85892726-85892745 | MS.gene059336:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85892691 | 85896390 | 85892691 | ID=MS.gene059336 |
| chr3.4 | mRNA | 85892691 | 85896390 | 85892691 | ID=MS.gene059336.t1;Parent=MS.gene059336 |
| chr3.4 | exon | 85896270 | 85896390 | 85896270 | ID=MS.gene059336.t1.exon1;Parent=MS.gene059336.t1 |
| chr3.4 | CDS | 85896270 | 85896390 | 85896270 | ID=cds.MS.gene059336.t1;Parent=MS.gene059336.t1 |
| chr3.4 | exon | 85895119 | 85895303 | 85895119 | ID=MS.gene059336.t1.exon2;Parent=MS.gene059336.t1 |
| chr3.4 | CDS | 85895119 | 85895303 | 85895119 | ID=cds.MS.gene059336.t1;Parent=MS.gene059336.t1 |
| chr3.4 | exon | 85894948 | 85895015 | 85894948 | ID=MS.gene059336.t1.exon3;Parent=MS.gene059336.t1 |
| chr3.4 | CDS | 85894948 | 85895015 | 85894948 | ID=cds.MS.gene059336.t1;Parent=MS.gene059336.t1 |
| chr3.4 | exon | 85893940 | 85894072 | 85893940 | ID=MS.gene059336.t1.exon4;Parent=MS.gene059336.t1 |
| chr3.4 | CDS | 85893940 | 85894072 | 85893940 | ID=cds.MS.gene059336.t1;Parent=MS.gene059336.t1 |
| chr3.4 | exon | 85893244 | 85893405 | 85893244 | ID=MS.gene059336.t1.exon5;Parent=MS.gene059336.t1 |
| chr3.4 | CDS | 85893244 | 85893405 | 85893244 | ID=cds.MS.gene059336.t1;Parent=MS.gene059336.t1 |
| chr3.4 | exon | 85892888 | 85893160 | 85892888 | ID=MS.gene059336.t1.exon6;Parent=MS.gene059336.t1 |
| chr3.4 | CDS | 85892888 | 85893160 | 85892888 | ID=cds.MS.gene059336.t1;Parent=MS.gene059336.t1 |
| chr3.4 | exon | 85892691 | 85892786 | 85892691 | ID=MS.gene059336.t1.exon7;Parent=MS.gene059336.t1 |
| chr3.4 | CDS | 85892691 | 85892786 | 85892691 | ID=cds.MS.gene059336.t1;Parent=MS.gene059336.t1 |
| Gene Sequence |
| Protein sequence |
