Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059700.t1 | XP_003630093.1 | 95.5 | 289 | 7 | 1 | 1 | 283 | 50 | 338 | 1.40E-147 | 532.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059700.t1 | Q39162 | 62.7 | 292 | 99 | 4 | 1 | 283 | 54 | 344 | 1.2e-91 | 337.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059700.t1 | G7LB89 | 95.5 | 289 | 7 | 1 | 1 | 283 | 50 | 338 | 9.8e-148 | 532.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene059700.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059698 | MS.gene059700 | 0.842288 | 2.83E-58 | -1.69E-46 |
| MS.gene059700 | MS.gene059702 | 0.87007 | 1.93E-66 | -1.69E-46 |
| MS.gene059700 | MS.gene28123 | 0.879177 | 1.54E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059700.t1 | MTR_8g091650 | 95.502 | 289 | 7 | 1 | 1 | 283 | 50 | 338 | 0.0 | 565 |
| MS.gene059700.t1 | MTR_8g091650 | 84.923 | 325 | 7 | 2 | 1 | 283 | 50 | 374 | 0.0 | 545 |
| MS.gene059700.t1 | MTR_8g091650 | 95.076 | 264 | 7 | 1 | 26 | 283 | 2 | 265 | 0.0 | 512 |
| MS.gene059700.t1 | MTR_3g087940 | 68.276 | 290 | 84 | 3 | 1 | 283 | 55 | 343 | 1.55e-141 | 403 |
| MS.gene059700.t1 | MTR_5g060950 | 48.364 | 275 | 135 | 2 | 16 | 283 | 57 | 331 | 3.40e-78 | 241 |
| MS.gene059700.t1 | MTR_3g073560 | 48.375 | 277 | 134 | 3 | 16 | 283 | 53 | 329 | 5.55e-78 | 248 |
| MS.gene059700.t1 | MTR_8g040120 | 49.077 | 271 | 118 | 5 | 26 | 281 | 181 | 446 | 9.09e-77 | 241 |
| MS.gene059700.t1 | MTR_7g089800 | 47.619 | 273 | 123 | 5 | 26 | 283 | 138 | 405 | 1.52e-75 | 237 |
| MS.gene059700.t1 | MTR_7g089800 | 47.619 | 273 | 123 | 5 | 26 | 283 | 167 | 434 | 3.06e-75 | 237 |
| MS.gene059700.t1 | MTR_5g054900 | 46.468 | 269 | 126 | 4 | 25 | 279 | 67 | 331 | 2.81e-72 | 226 |
| MS.gene059700.t1 | MTR_2g086420 | 47.191 | 267 | 123 | 5 | 26 | 283 | 194 | 451 | 4.61e-72 | 230 |
| MS.gene059700.t1 | MTR_2g086420 | 47.191 | 267 | 123 | 5 | 26 | 283 | 193 | 450 | 4.74e-72 | 230 |
| MS.gene059700.t1 | MTR_5g054900 | 46.269 | 268 | 124 | 4 | 25 | 279 | 67 | 327 | 1.57e-71 | 224 |
| MS.gene059700.t1 | MTR_5g054900 | 46.468 | 269 | 126 | 4 | 25 | 279 | 148 | 412 | 2.40e-71 | 226 |
| MS.gene059700.t1 | MTR_7g092750 | 42.014 | 288 | 153 | 4 | 10 | 283 | 57 | 344 | 4.02e-71 | 223 |
| MS.gene059700.t1 | MTR_5g054900 | 46.269 | 268 | 124 | 4 | 25 | 279 | 178 | 438 | 3.04e-70 | 224 |
| MS.gene059700.t1 | MTR_7g092750 | 42.014 | 288 | 153 | 4 | 10 | 283 | 158 | 445 | 4.25e-70 | 224 |
| MS.gene059700.t1 | MTR_4g053250 | 43.866 | 269 | 134 | 4 | 22 | 283 | 185 | 443 | 2.60e-66 | 215 |
| MS.gene059700.t1 | MTR_1g111310 | 42.647 | 272 | 141 | 5 | 25 | 283 | 420 | 689 | 2.37e-63 | 212 |
| MS.gene059700.t1 | MTR_1g111310 | 42.222 | 270 | 137 | 5 | 25 | 283 | 53 | 314 | 1.85e-56 | 193 |
| MS.gene059700.t1 | MTR_7g092750 | 39.716 | 282 | 142 | 5 | 10 | 283 | 158 | 419 | 5.18e-59 | 194 |
| MS.gene059700.t1 | MTR_0126s0080 | 40.385 | 260 | 140 | 5 | 10 | 254 | 200 | 459 | 5.71e-55 | 185 |
| MS.gene059700.t1 | MTR_3g044820 | 42.236 | 161 | 85 | 4 | 25 | 177 | 44 | 204 | 2.13e-36 | 129 |
| MS.gene059700.t1 | MTR_1g090370 | 31.222 | 221 | 120 | 7 | 80 | 288 | 22 | 222 | 4.49e-23 | 95.1 |
| MS.gene059700.t1 | MTR_1g111320 | 55.172 | 58 | 25 | 1 | 26 | 82 | 146 | 203 | 2.52e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059700.t1 | AT5G10030 | 62.671 | 292 | 99 | 4 | 1 | 283 | 54 | 344 | 3.44e-125 | 361 |
| MS.gene059700.t1 | AT5G10030 | 62.671 | 292 | 99 | 4 | 1 | 283 | 54 | 344 | 3.44e-125 | 361 |
| MS.gene059700.t1 | AT5G10030 | 62.671 | 292 | 99 | 4 | 1 | 283 | 54 | 344 | 3.44e-125 | 361 |
| MS.gene059700.t1 | AT5G10030 | 62.671 | 292 | 99 | 4 | 1 | 283 | 54 | 344 | 3.44e-125 | 361 |
| MS.gene059700.t1 | AT5G10030 | 62.671 | 292 | 99 | 4 | 1 | 283 | 54 | 344 | 3.44e-125 | 361 |
| MS.gene059700.t1 | AT5G65210 | 61.986 | 292 | 101 | 4 | 1 | 283 | 58 | 348 | 6.80e-124 | 358 |
| MS.gene059700.t1 | AT5G65210 | 61.986 | 292 | 101 | 4 | 1 | 283 | 58 | 348 | 6.80e-124 | 358 |
| MS.gene059700.t1 | AT5G65210 | 61.986 | 292 | 101 | 4 | 1 | 283 | 58 | 348 | 6.80e-124 | 358 |
| MS.gene059700.t1 | AT5G65210 | 61.986 | 292 | 101 | 4 | 1 | 283 | 58 | 348 | 6.80e-124 | 358 |
| MS.gene059700.t1 | AT5G65210 | 61.986 | 292 | 101 | 4 | 1 | 283 | 58 | 348 | 6.80e-124 | 358 |
| MS.gene059700.t1 | AT5G65210 | 61.986 | 292 | 101 | 4 | 1 | 283 | 58 | 348 | 6.80e-124 | 358 |
| MS.gene059700.t1 | AT5G65210 | 62.909 | 275 | 93 | 3 | 18 | 283 | 4 | 278 | 1.72e-120 | 347 |
| MS.gene059700.t1 | AT1G22070 | 54.874 | 277 | 116 | 4 | 16 | 283 | 88 | 364 | 1.24e-98 | 295 |
| MS.gene059700.t1 | AT1G77920 | 54.851 | 268 | 105 | 3 | 23 | 283 | 90 | 348 | 1.34e-98 | 294 |
| MS.gene059700.t1 | AT5G06950 | 49.259 | 270 | 118 | 5 | 26 | 281 | 46 | 310 | 6.57e-75 | 232 |
| MS.gene059700.t1 | AT5G06950 | 49.259 | 270 | 118 | 5 | 26 | 281 | 46 | 310 | 6.57e-75 | 232 |
| MS.gene059700.t1 | AT5G06950 | 49.259 | 270 | 118 | 5 | 26 | 281 | 46 | 310 | 6.57e-75 | 232 |
| MS.gene059700.t1 | AT5G06950 | 49.259 | 270 | 118 | 5 | 26 | 281 | 46 | 310 | 6.57e-75 | 232 |
| MS.gene059700.t1 | AT5G06950 | 49.259 | 270 | 118 | 5 | 26 | 281 | 46 | 310 | 6.57e-75 | 232 |
| MS.gene059700.t1 | AT1G08320 | 46.992 | 266 | 125 | 5 | 26 | 283 | 54 | 311 | 2.01e-74 | 232 |
| MS.gene059700.t1 | AT1G08320 | 46.992 | 266 | 125 | 5 | 26 | 283 | 54 | 311 | 2.01e-74 | 232 |
| MS.gene059700.t1 | AT3G12250 | 48.000 | 275 | 124 | 5 | 21 | 281 | 14 | 283 | 3.64e-74 | 229 |
| MS.gene059700.t1 | AT3G12250 | 48.000 | 275 | 124 | 5 | 21 | 281 | 41 | 310 | 4.19e-74 | 230 |
| MS.gene059700.t1 | AT3G12250 | 48.000 | 275 | 124 | 5 | 21 | 281 | 41 | 310 | 4.19e-74 | 230 |
| MS.gene059700.t1 | AT3G12250 | 48.000 | 275 | 124 | 5 | 21 | 281 | 41 | 310 | 4.19e-74 | 230 |
| MS.gene059700.t1 | AT3G12250 | 48.000 | 275 | 124 | 5 | 21 | 281 | 41 | 310 | 4.19e-74 | 230 |
| MS.gene059700.t1 | AT3G12250 | 45.485 | 299 | 136 | 6 | 5 | 281 | 42 | 335 | 7.17e-74 | 230 |
| MS.gene059700.t1 | AT3G12250 | 48.000 | 275 | 124 | 5 | 21 | 281 | 35 | 304 | 7.64e-74 | 229 |
| MS.gene059700.t1 | AT5G06960 | 47.080 | 274 | 128 | 4 | 26 | 286 | 26 | 295 | 1.12e-73 | 228 |
| MS.gene059700.t1 | AT5G06960 | 47.080 | 274 | 128 | 4 | 26 | 286 | 46 | 315 | 1.22e-73 | 229 |
| MS.gene059700.t1 | AT5G06960 | 47.080 | 274 | 128 | 4 | 26 | 286 | 46 | 315 | 1.22e-73 | 229 |
| MS.gene059700.t1 | AT1G08320 | 46.992 | 266 | 125 | 5 | 26 | 283 | 178 | 435 | 4.41e-73 | 232 |
| MS.gene059700.t1 | AT1G08320 | 46.992 | 266 | 125 | 5 | 26 | 283 | 178 | 435 | 4.41e-73 | 232 |
| MS.gene059700.t1 | AT1G08320 | 46.992 | 266 | 125 | 5 | 26 | 283 | 178 | 435 | 4.41e-73 | 232 |
| MS.gene059700.t1 | AT5G06839 | 42.414 | 290 | 145 | 5 | 16 | 283 | 108 | 397 | 1.77e-67 | 216 |
| MS.gene059700.t1 | AT5G06839 | 42.414 | 290 | 145 | 5 | 16 | 283 | 151 | 440 | 2.76e-67 | 216 |
| MS.gene059700.t1 | AT5G06839 | 42.268 | 291 | 145 | 6 | 16 | 283 | 108 | 398 | 9.30e-66 | 211 |
| MS.gene059700.t1 | AT1G68640 | 39.931 | 288 | 158 | 4 | 7 | 281 | 147 | 432 | 1.26e-58 | 194 |
Find 0 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAACAAAATTTATTAGA+GGG | + | 57603:6239-6258 | MS.gene059700:intron | 15.0% |
| !! | TAAGTAACAAAATTTATTAG+AGG | + | 57603:6238-6257 | MS.gene059700:intron | 15.0% |
| !! | TTGACAATAATAAACTTAAT+TGG | - | 57603:7391-7410 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTATAAAGCAAAA+AGG | - | 57603:5949-5968 | None:intergenic | 15.0% |
| !!! | TGATATATAATATTAGCTTT+GGG | + | 57603:6472-6491 | MS.gene059700:intron | 15.0% |
| !!! | TTGATATATAATATTAGCTT+TGG | + | 57603:6471-6490 | MS.gene059700:intron | 15.0% |
| !! | AATATATAACATACATTACC+TGG | - | 57603:7173-7192 | None:intergenic | 20.0% |
| !! | ACAAAAGCAACATTAATTAA+AGG | - | 57603:6101-6120 | None:intergenic | 20.0% |
| !! | ATATCAGTGATATACAAATT+GGG | + | 57603:6664-6683 | MS.gene059700:CDS | 20.0% |
| !! | CAAATTAAAAAGGTTAAACT+AGG | + | 57603:7349-7368 | MS.gene059700:intron | 20.0% |
| !! | CACAAATTACCAAATTAAAA+AGG | + | 57603:7339-7358 | MS.gene059700:intron | 20.0% |
| !! | CCTTTAACAAAATTTCAAAA+TGG | - | 57603:5105-5124 | None:intergenic | 20.0% |
| !! | TAAGTTTATTATTGTCAAAC+AGG | + | 57603:7393-7412 | MS.gene059700:intron | 20.0% |
| !!! | AAACTTTGAGAAAATTCTTT+AGG | + | 57603:5887-5906 | MS.gene059700:intron | 20.0% |
| !!! | AGAAATAACAACTTTTAAGA+TGG | + | 57603:6575-6594 | MS.gene059700:intron | 20.0% |
| !!! | AGTTGTTATTTCTGTAAATT+AGG | - | 57603:6568-6587 | None:intergenic | 20.0% |
| !!! | CCATTTTGAAATTTTGTTAA+AGG | + | 57603:5102-5121 | MS.gene059700:intron | 20.0% |
| !!! | CTAGTTTAACCTTTTTAATT+TGG | - | 57603:7351-7370 | None:intergenic | 20.0% |
| !!! | GAAATTTTGGAAGAAATTAT+TGG | - | 57603:6321-6340 | None:intergenic | 20.0% |
| ! | AACATTAATTAAAGGAAAGG+AGG | - | 57603:6093-6112 | None:intergenic | 25.0% |
| ! | ACATTAATTAAAGGAAAGGA+GGG | - | 57603:6092-6111 | None:intergenic | 25.0% |
| ! | AGCAACATTAATTAAAGGAA+AGG | - | 57603:6096-6115 | None:intergenic | 25.0% |
| ! | CAAAAAAGTGATTTCATCAT+AGG | - | 57603:5792-5811 | None:intergenic | 25.0% |
| ! | CATATCAGTGATATACAAAT+TGG | + | 57603:6663-6682 | MS.gene059700:CDS | 25.0% |
| ! | CGTATAATTTAGATTAGATG+AGG | + | 57603:7197-7216 | MS.gene059700:intron | 25.0% |
| ! | GATATTGAACAATATGAAGT+AGG | - | 57603:5588-5607 | None:intergenic | 25.0% |
| ! | GGATTGGATTCTAATAATTT+AGG | + | 57603:5678-5697 | MS.gene059700:CDS | 25.0% |
| ! | TATCAGTGATATACAAATTG+GGG | + | 57603:6665-6684 | MS.gene059700:CDS | 25.0% |
| !! | CTTACTGCAGATATATATTT+TGG | + | 57603:5965-5984 | MS.gene059700:intron | 25.0% |
| !! | TCAATCACATTAATCCATTT+TGG | + | 57603:5026-5045 | MS.gene059700:intron | 25.0% |
| !! | TTTGGTAATTTGTGTGTTAA+TGG | - | 57603:7333-7352 | None:intergenic | 25.0% |
| !!! | GTTGGTTTGTTATTAAATTC+TGG | + | 57603:5724-5743 | MS.gene059700:intron | 25.0% |
| !!! | TCTAATAATTTAGGTTTTGC+TGG | + | 57603:5687-5706 | MS.gene059700:CDS | 25.0% |
| !!! | TCTATTCTCAAACTAGTTTT+TGG | + | 57603:6530-6549 | MS.gene059700:intron | 25.0% |
| !!! | TGCGTTTTTTTATGCTTATA+AGG | + | 57603:5307-5326 | MS.gene059700:intron | 25.0% |
| !!! | TGTATGGACTATTTTTTACA+CGG | + | 57603:4947-4966 | MS.gene059700:intron | 25.0% |
| AAATTGCAGGGATTGTATAT+TGG | + | 57603:5651-5670 | MS.gene059700:intron | 30.0% | |
| AACCTACAAAATCAACTACA+AGG | + | 57603:5856-5875 | MS.gene059700:intron | 30.0% | |
| ACCTACAAAATCAACTACAA+GGG | + | 57603:5857-5876 | MS.gene059700:intron | 30.0% | |
| AGACAAATGTTGGAATTGAA+AGG | + | 57603:6627-6646 | MS.gene059700:CDS | 30.0% | |
| AGCTAACACAGTTACTAATA+AGG | + | 57603:4777-4796 | MS.gene059700:CDS | 30.0% | |
| ATCGATATACTTGATCAACA+TGG | + | 57603:6858-6877 | MS.gene059700:intron | 30.0% | |
| ATTCCAACATTTGTCTGTTT+AGG | - | 57603:6623-6642 | None:intergenic | 30.0% | |
| ATTGCTCAATCAGTATTTCA+TGG | + | 57603:5131-5150 | MS.gene059700:intron | 30.0% | |
| CTAAGTTTCTACAAAGTTTG+AGG | - | 57603:5192-5211 | None:intergenic | 30.0% | |
| CTGTCAATGGTTCAATTAAA+GGG | - | 57603:6957-6976 | None:intergenic | 30.0% | |
| GAATAGAGTTCAATACAAGA+AGG | - | 57603:6517-6536 | None:intergenic | 30.0% | |
| GAATCAAATGCTTGTTTGTT+TGG | - | 57603:5444-5463 | None:intergenic | 30.0% | |
| TAAGAGTCGTTTGAAGAAAA+AGG | + | 57603:5383-5402 | MS.gene059700:CDS | 30.0% | |
| TCCATACATGTTTGATATGA+CGG | - | 57603:4935-4954 | None:intergenic | 30.0% | |
| TCGATATACTTGATCAACAT+GGG | + | 57603:6859-6878 | MS.gene059700:intron | 30.0% | |
| TCTGTCAATGGTTCAATTAA+AGG | - | 57603:6958-6977 | None:intergenic | 30.0% | |
| TGGATTCAGAGTTTCAAAAT+TGG | - | 57603:6301-6320 | None:intergenic | 30.0% | |
| TTAATGCAGAGAGAAATGTT+TGG | + | 57603:6205-6224 | MS.gene059700:intron | 30.0% | |
| TTGAACTTAACATTGCACAT+GGG | - | 57603:4976-4995 | None:intergenic | 30.0% | |
| TTTAATTGAACCATTGACAG+AGG | + | 57603:6957-6976 | MS.gene059700:CDS | 30.0% | |
| ! | AGAGAGAAATGTTTGGAATA+AGG | + | 57603:6212-6231 | MS.gene059700:intron | 30.0% |
| ! | GATGTTTTCTATGTTATCAC+TGG | + | 57603:6756-6775 | MS.gene059700:CDS | 30.0% |
| ! | GTTGATCAAGTATATCGATT+AGG | - | 57603:6857-6876 | None:intergenic | 30.0% |
| ! | GTTTGAAATAGTGATTCATG+AGG | - | 57603:6704-6723 | None:intergenic | 30.0% |
| ! | TGGGTTGAACAAAATTAATG+TGG | - | 57603:4912-4931 | None:intergenic | 30.0% |
| ! | TTCCAAAATTTCAAGTAAGC+TGG | + | 57603:6329-6348 | MS.gene059700:intron | 30.0% |
| ! | TTTTTCCATACCTTGTGAAA+GGG | - | 57603:7037-7056 | None:intergenic | 30.0% |
| !! | ACTGCAGATATATATTTTGG+TGG | + | 57603:5968-5987 | MS.gene059700:intron | 30.0% |
| !! | AGTTTTATCAGAAGTATGCA+TGG | + | 57603:7295-7314 | MS.gene059700:intron | 30.0% |
| !!! | AGCATTTTAGAACCACATTT+TGG | + | 57603:5225-5244 | MS.gene059700:intron | 30.0% |
| !!! | GATGCTTCTTTTGGAATATT+GGG | + | 57603:4727-4746 | MS.gene059700:CDS | 30.0% |
| !!! | GTATGGACTATTTTTTACAC+GGG | + | 57603:4948-4967 | MS.gene059700:intron | 30.0% |
| !!! | TATGGACTATTTTTTACACG+GGG | + | 57603:4949-4968 | MS.gene059700:intron | 30.0% |
| AAAAGGACATGCATGCAAAA+AGG | - | 57603:5932-5951 | None:intergenic | 35.0% | |
| AAAAGTCGACCAATCTGAAA+GGG | + | 57603:5049-5068 | MS.gene059700:intron | 35.0% | |
| ACAAGGTATGGAAAAACTAC+AGG | + | 57603:7041-7060 | MS.gene059700:CDS | 35.0% | |
| ACATCCAAAATTTGGAAGCA+GGG | - | 57603:5281-5300 | None:intergenic | 35.0% | |
| ACCGTCATATCAAACATGTA+TGG | + | 57603:4931-4950 | MS.gene059700:intron | 35.0% | |
| AGACCTAAACAGACAAATGT+TGG | + | 57603:6617-6636 | MS.gene059700:CDS | 35.0% | |
| AGAGCTAGATCATACAAAAC+AGG | + | 57603:5534-5553 | MS.gene059700:CDS | 35.0% | |
| AGATGGATATTGCAATAGAG+AGG | + | 57603:7121-7140 | MS.gene059700:CDS | 35.0% | |
| AGTGAGGTCATTGCTAAAAT+AGG | - | 57603:6054-6073 | None:intergenic | 35.0% | |
| ATACATGTTTGATATGACGG+TGG | - | 57603:4932-4951 | None:intergenic | 35.0% | |
| ATGTTTGTGATGAGATTTGC+AGG | + | 57603:6924-6943 | MS.gene059700:intron | 35.0% | |
| CAAATTGGGGAACTTGTAAA+TGG | + | 57603:6678-6697 | MS.gene059700:CDS | 35.0% | |
| CAAGAAGGAAAACATACTCA+AGG | - | 57603:6502-6521 | None:intergenic | 35.0% | |
| CAAGGTATGGAAAAACTACA+GGG | + | 57603:7042-7061 | MS.gene059700:CDS | 35.0% | |
| CACAAACATACATTATGCCA+TGG | - | 57603:6913-6932 | None:intergenic | 35.0% | |
| CATCAAGAGATTGACAAATG+AGG | - | 57603:5626-5645 | None:intergenic | 35.0% | |
| CGATATACTTGATCAACATG+GGG | + | 57603:6860-6879 | MS.gene059700:intron | 35.0% | |
| CTTGATGCAACAAAATTGCA+GGG | + | 57603:5639-5658 | MS.gene059700:intron | 35.0% | |
| GCATGACTTCTCAAGATTAT+AGG | - | 57603:6998-7017 | None:intergenic | 35.0% | |
| GTCGTTTGAAGAAAAAGGTT+TGG | + | 57603:5388-5407 | MS.gene059700:intron | 35.0% | |
| GTTGAACTTAACATTGCACA+TGG | - | 57603:4977-4996 | None:intergenic | 35.0% | |
| TAAAACTTATACTCCTGCCA+TGG | - | 57603:7282-7301 | None:intergenic | 35.0% | |
| TAAGATGGAGTATGAACACT+GGG | + | 57603:6590-6609 | MS.gene059700:CDS | 35.0% | |
| TACATGTTTGATATGACGGT+GGG | - | 57603:4931-4950 | None:intergenic | 35.0% | |
| TCACACCAAAAAATTTCCAC+AGG | - | 57603:6272-6291 | None:intergenic | 35.0% | |
| TCTATTGCAATATCCATCTG+TGG | - | 57603:7120-7139 | None:intergenic | 35.0% | |
| TCTTGATGCAACAAAATTGC+AGG | + | 57603:5638-5657 | MS.gene059700:intron | 35.0% | |
| TGTCACTGCTCTTATAAATG+TGG | + | 57603:5762-5781 | MS.gene059700:intron | 35.0% | |
| TTAAGATGGAGTATGAACAC+TGG | + | 57603:6589-6608 | MS.gene059700:CDS | 35.0% | |
| TTAGACACTACATTCTGTTC+TGG | + | 57603:6448-6467 | MS.gene059700:intron | 35.0% | |
| TTAGATGAGGTTATGAGTAG+TGG | + | 57603:7210-7229 | MS.gene059700:intron | 35.0% | |
| TTGAGGCATAAGGAAAGAAT+GGG | - | 57603:5175-5194 | None:intergenic | 35.0% | |
| ! | AGCCAGCTTACTTGAAATTT+TGG | - | 57603:6334-6353 | None:intergenic | 35.0% |
| ! | AGGTGTTACCTTTAGAAGTT+CGG | - | 57603:6837-6856 | None:intergenic | 35.0% |
| ! | GTTTTTCCATACCTTGTGAA+AGG | - | 57603:7038-7057 | None:intergenic | 35.0% |
| ! | TAGTAACTGTGTTAGCTTCT+TGG | - | 57603:4774-4793 | None:intergenic | 35.0% |
| ! | TCTACAAAGTTTGAGGCATA+AGG | - | 57603:5185-5204 | None:intergenic | 35.0% |
| ! | TTGTCGCTTCAACATAATCA+AGG | + | 57603:4884-4903 | MS.gene059700:intron | 35.0% |
| ! | TTTGAGGCATAAGGAAAGAA+TGG | - | 57603:5176-5195 | None:intergenic | 35.0% |
| !! | ATTGGTCGACTTTTCCAAAA+TGG | - | 57603:5043-5062 | None:intergenic | 35.0% |
| !! | ATTGTATATTGGTGGTGGAT+TGG | + | 57603:5662-5681 | MS.gene059700:CDS | 35.0% |
| !! | TCCCTTGTAGTTGATTTTGT+AGG | - | 57603:5861-5880 | None:intergenic | 35.0% |
| !!! | CTACTCCTGTGGAAATTTTT+TGG | + | 57603:6264-6283 | MS.gene059700:intron | 35.0% |
| !!! | GCAGATATATATTTTGGTGG+TGG | + | 57603:5971-5990 | MS.gene059700:intron | 35.0% |
| !!! | GGATGCTTCTTTTGGAATAT+TGG | + | 57603:4726-4745 | MS.gene059700:CDS | 35.0% |
| AACCATTGACAGAGGAACAA+CGG | + | 57603:6965-6984 | MS.gene059700:CDS | 40.0% | |
| AATAGGATTTGAGTAGCTGC+TGG | - | 57603:6037-6056 | None:intergenic | 40.0% | |
| AGGAACTTACATTCCACAGA+TGG | + | 57603:7104-7123 | MS.gene059700:CDS | 40.0% | |
| ATGTGGAAAACAACAGCTGA+AGG | + | 57603:6780-6799 | MS.gene059700:CDS | 40.0% | |
| CAAGCCAGACATCCAAAATT+TGG | - | 57603:5289-5308 | None:intergenic | 40.0% | |
| CATCCAAAATTTGGAAGCAG+GGG | - | 57603:5280-5299 | None:intergenic | 40.0% | |
| GAAAAGTCGACCAATCTGAA+AGG | + | 57603:5048-5067 | MS.gene059700:intron | 40.0% | |
| GACACAACAGTTATGAGTAG+TGG | + | 57603:7242-7261 | MS.gene059700:intron | 40.0% | |
| GACATCCAAAATTTGGAAGC+AGG | - | 57603:5282-5301 | None:intergenic | 40.0% | |
| GAGTATCTGAATGTACAGTG+AGG | - | 57603:6070-6089 | None:intergenic | 40.0% | |
| GATTCCTGACGTTTCATAAC+AGG | + | 57603:5459-5478 | MS.gene059700:intron | 40.0% | |
| TATGTTGAAGCGACAAAGTG+CGG | - | 57603:4880-4899 | None:intergenic | 40.0% | |
| TCTATGTTATCACTGGCATG+TGG | + | 57603:6763-6782 | MS.gene059700:CDS | 40.0% | |
| TGCAAAGTGAGTCCAAAATG+TGG | - | 57603:5240-5259 | None:intergenic | 40.0% | |
| TGGAAAACAATGCTGATCCA+TGG | + | 57603:7262-7281 | MS.gene059700:intron | 40.0% | |
| TGTGGAAAACAACAGCTGAA+GGG | + | 57603:6781-6800 | MS.gene059700:CDS | 40.0% | |
| TTGCAGGGATTGTATATTGG+TGG | + | 57603:5654-5673 | MS.gene059700:intron | 40.0% | |
| ! | CTGCTGTCATATTTCTACCA+TGG | + | 57603:6893-6912 | MS.gene059700:intron | 40.0% |
| ! | GAAGGGTTTTTCTTGTGGAT+TGG | + | 57603:6798-6817 | MS.gene059700:CDS | 40.0% |
| ! | GCTTCCAAATTTTGGATGTC+TGG | + | 57603:5282-5301 | MS.gene059700:intron | 40.0% |
| ! | TAACTGTGTTAGCTTCTTGG+TGG | - | 57603:4771-4790 | None:intergenic | 40.0% |
| ! | TGTTACCTTTAGAAGTTCGG+AGG | - | 57603:6834-6853 | None:intergenic | 40.0% |
| ! | TTGCTACTTGCTTGATATCG+CGG | + | 57603:4810-4829 | MS.gene059700:intron | 40.0% |
| !! | GTGTCGTTTAAAGCTGTTAC+AGG | + | 57603:5504-5523 | MS.gene059700:CDS | 40.0% |
| !! | TTTGCTGGCTCTGTAAATTC+AGG | + | 57603:5702-5721 | MS.gene059700:CDS | 40.0% |
| AAACAATGCTGATCCATGGC+AGG | + | 57603:7266-7285 | MS.gene059700:intron | 45.0% | |
| AACCGTTGTTCCTCTGTCAA+TGG | - | 57603:6970-6989 | None:intergenic | 45.0% | |
| ACTTTGCACTGCAGATTAGG+AGG | + | 57603:5252-5271 | MS.gene059700:intron | 45.0% | |
| AGATGCCCTTTCACAAGGTA+TGG | + | 57603:7029-7048 | MS.gene059700:CDS | 45.0% | |
| AGGCCAATAAGCCCTAGTTT+AGG | - | 57603:5999-6018 | None:intergenic | 45.0% | |
| CAGGGATTGTATATTGGTGG+TGG | + | 57603:5657-5676 | MS.gene059700:intron | 45.0% | |
| CTCACTTTGCACTGCAGATT+AGG | + | 57603:5249-5268 | MS.gene059700:intron | 45.0% | |
| CTTTGCACTGCAGATTAGGA+GGG | + | 57603:5253-5272 | MS.gene059700:intron | 45.0% | |
| GACCCTAAACTAGGGCTTAT+TGG | + | 57603:5993-6012 | MS.gene059700:intron | 45.0% | |
| GCTGGCTATTATGTACCTAG+TGG | + | 57603:6347-6366 | MS.gene059700:intron | 45.0% | |
| GGATATTGCAATAGAGAGGC+TGG | + | 57603:7125-7144 | MS.gene059700:CDS | 45.0% | |
| GGCCAATAAGCCCTAGTTTA+GGG | - | 57603:5998-6017 | None:intergenic | 45.0% | |
| GTGATGAGATTTGCAGGTTC+TGG | + | 57603:6930-6949 | MS.gene059700:intron | 45.0% | |
| TGAGCCTGTTATGAAACGTC+AGG | - | 57603:5466-5485 | None:intergenic | 45.0% | |
| TTCGACCTCCGAACTTCTAA+AGG | + | 57603:6826-6845 | MS.gene059700:intron | 45.0% | |
| ! | CAGCTGAAGGGTTTTTCTTG+TGG | + | 57603:6793-6812 | MS.gene059700:CDS | 45.0% |
| !! | AAAGGGCATCTTCTGCTTGT+CGG | - | 57603:7020-7039 | None:intergenic | 45.0% |
| !! | ATTAGAGGGTACTACTCCTG+TGG | + | 57603:6253-6272 | MS.gene059700:intron | 45.0% |
| !! | CTGGCTCTGTAAATTCAGGT+TGG | + | 57603:5706-5725 | MS.gene059700:intron | 45.0% |
| !!! | GGGTTTTTCTTGTGGATTGG+AGG | + | 57603:6801-6820 | MS.gene059700:CDS | 45.0% |
| AATAGAGAGGCTGGAAGCTC+TGG | + | 57603:7134-7153 | MS.gene059700:CDS | 50.0% | |
| ACAGGCTGATCATCTTCGAC+AGG | + | 57603:7411-7430 | MS.gene059700:intron | 50.0% | |
| ACGTCTCGCACAAAATCGAG+AGG | + | 57603:5353-5372 | MS.gene059700:CDS | 50.0% | |
| CCATCGAGCAGTTTGACGTA+CGG | - | 57603:7467-7486 | None:intergenic | 50.0% | |
| CTTGTTGACACAGTTGCAGC+AGG | + | 57603:7069-7088 | MS.gene059700:CDS | 50.0% | |
| GATGGAGTATGAACACTGGG+TGG | + | 57603:6593-6612 | MS.gene059700:CDS | 50.0% | |
| GATTTGAGTAGCTGCTGGTC+TGG | - | 57603:6032-6051 | None:intergenic | 50.0% | |
| GCAGAAGATGCCCTTTCACA+AGG | + | 57603:7024-7043 | MS.gene059700:CDS | 50.0% | |
| TCGCATCAGCCCTTTCAGAT+TGG | - | 57603:5061-5080 | None:intergenic | 50.0% | |
| TTGTACACAGTGCTGCCACT+AGG | - | 57603:6365-6384 | None:intergenic | 50.0% | |
| ! | GGCTTATTGGCCTCACCATT+GGG | + | 57603:6006-6025 | MS.gene059700:intron | 50.0% |
| ! | GGTCCCCTGCTTCCAAATTT+TGG | + | 57603:5274-5293 | MS.gene059700:intron | 50.0% |
| !! | TCTGGCTAGCTTTGTGAACC+AGG | + | 57603:7152-7171 | MS.gene059700:CDS | 50.0% |
| !! | TGGTGGTGGACCCTAAACTA+GGG | + | 57603:5985-6004 | MS.gene059700:intron | 50.0% |
| !! | TTGGTGGTGGACCCTAAACT+AGG | + | 57603:5984-6003 | MS.gene059700:intron | 50.0% |
| CCGTACGTCAAACTGCTCGA+TGG | + | 57603:7464-7483 | MS.gene059700:CDS | 55.0% | |
| GCAGCAGGACAACTCGTTGA+AGG | + | 57603:7084-7103 | MS.gene059700:CDS | 55.0% | |
| GCTCGATGGCTGCTTGCTTT+GGG | + | 57603:7478-7497 | MS.gene059700:CDS | 55.0% | |
| TGCTCGATGGCTGCTTGCTT+TGG | + | 57603:7477-7496 | MS.gene059700:CDS | 55.0% | |
| ! | GGGCTTATTGGCCTCACCAT+TGG | + | 57603:6005-6024 | MS.gene059700:intron | 55.0% |
| ! | TAGCTGCTGGTCTGGCCCAA+TGG | - | 57603:6024-6043 | None:intergenic | 60.0% |
| ! | GCTGGTCTGGCCCAATGGTG+AGG | - | 57603:6019-6038 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57603 | gene | 4721 | 7522 | 4721 | ID=MS.gene059700 |
| 57603 | mRNA | 4721 | 7522 | 4721 | ID=MS.gene059700.t1;Parent=MS.gene059700 |
| 57603 | exon | 4721 | 4798 | 4721 | ID=MS.gene059700.t1.exon1;Parent=MS.gene059700.t1 |
| 57603 | CDS | 4721 | 4798 | 4721 | ID=cds.MS.gene059700.t1;Parent=MS.gene059700.t1 |
| 57603 | exon | 5345 | 5404 | 5345 | ID=MS.gene059700.t1.exon2;Parent=MS.gene059700.t1 |
| 57603 | CDS | 5345 | 5404 | 5345 | ID=cds.MS.gene059700.t1;Parent=MS.gene059700.t1 |
| 57603 | exon | 5481 | 5555 | 5481 | ID=MS.gene059700.t1.exon3;Parent=MS.gene059700.t1 |
| 57603 | CDS | 5481 | 5555 | 5481 | ID=cds.MS.gene059700.t1;Parent=MS.gene059700.t1 |
| 57603 | exon | 5660 | 5723 | 5660 | ID=MS.gene059700.t1.exon4;Parent=MS.gene059700.t1 |
| 57603 | CDS | 5660 | 5723 | 5660 | ID=cds.MS.gene059700.t1;Parent=MS.gene059700.t1 |
| 57603 | exon | 6577 | 6822 | 6577 | ID=MS.gene059700.t1.exon5;Parent=MS.gene059700.t1 |
| 57603 | CDS | 6577 | 6822 | 6577 | ID=cds.MS.gene059700.t1;Parent=MS.gene059700.t1 |
| 57603 | exon | 6938 | 7173 | 6938 | ID=MS.gene059700.t1.exon6;Parent=MS.gene059700.t1 |
| 57603 | CDS | 6938 | 7173 | 6938 | ID=cds.MS.gene059700.t1;Parent=MS.gene059700.t1 |
| 57603 | exon | 7415 | 7522 | 7415 | ID=MS.gene059700.t1.exon7;Parent=MS.gene059700.t1 |
| 57603 | CDS | 7415 | 7522 | 7415 | ID=cds.MS.gene059700.t1;Parent=MS.gene059700.t1 |
| Gene Sequence |
| Protein sequence |
