AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059698


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059698.t1 MTR_8g091650 83.387 313 34 3 1 299 50 358 0.0 519
MS.gene059698.t1 MTR_8g091650 74.785 349 34 4 1 299 50 394 2.92e-179 500
MS.gene059698.t1 MTR_8g091650 81.944 288 34 3 26 299 2 285 1.02e-168 469
MS.gene059698.t1 MTR_3g087940 60.828 314 103 4 1 299 55 363 5.62e-133 382
MS.gene059698.t1 MTR_5g060950 45.392 293 143 3 16 294 57 346 8.30e-77 238
MS.gene059698.t1 MTR_3g073560 44.781 297 143 6 16 295 53 345 9.74e-75 240
MS.gene059698.t1 MTR_8g040120 46.441 295 126 8 26 297 181 466 2.66e-72 230
MS.gene059698.t1 MTR_7g089800 45.424 295 129 8 26 297 138 423 4.83e-72 228
MS.gene059698.t1 MTR_7g089800 45.424 295 129 8 26 297 167 452 9.03e-72 228
MS.gene059698.t1 MTR_5g054900 44.330 291 140 5 25 297 67 353 2.50e-70 221
MS.gene059698.t1 MTR_5g054900 44.138 290 138 5 25 297 67 349 1.20e-69 219
MS.gene059698.t1 MTR_5g054900 44.483 290 139 5 26 297 149 434 1.79e-69 222
MS.gene059698.t1 MTR_5g054900 44.291 289 137 5 26 297 179 460 2.15e-68 220
MS.gene059698.t1 MTR_2g086420 44.637 289 130 8 26 297 193 468 4.24e-68 220
MS.gene059698.t1 MTR_2g086420 44.637 289 130 8 26 297 194 469 4.34e-68 220
MS.gene059698.t1 MTR_7g092750 40.203 296 153 4 10 297 158 437 6.89e-68 218
MS.gene059698.t1 MTR_7g092750 38.608 316 156 5 10 297 57 362 1.09e-67 215
MS.gene059698.t1 MTR_4g053250 42.160 287 145 5 22 297 185 461 4.51e-67 217
MS.gene059698.t1 MTR_7g092750 38.608 316 156 5 10 297 158 463 1.58e-66 215
MS.gene059698.t1 MTR_1g111310 40.604 298 142 8 25 297 420 707 4.53e-62 209
MS.gene059698.t1 MTR_1g111310 40.345 290 134 8 25 291 53 326 3.14e-53 185
MS.gene059698.t1 MTR_0126s0080 37.308 260 144 6 10 250 200 459 6.67e-45 159
MS.gene059698.t1 MTR_3g044820 44.848 165 83 4 25 181 44 208 2.16e-40 140
MS.gene059698.t1 MTR_1g090370 25.652 230 129 7 80 290 22 228 1.94e-12 65.9
MS.gene059698.t1 MTR_1g111320 55.172 58 25 1 26 82 146 203 5.53e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059698.t1 AT5G10030 56.913 311 120 5 1 298 54 363 9.78e-115 335
MS.gene059698.t1 AT5G10030 56.913 311 120 5 1 298 54 363 9.78e-115 335
MS.gene059698.t1 AT5G10030 56.913 311 120 5 1 298 54 363 9.78e-115 335
MS.gene059698.t1 AT5G10030 56.913 311 120 5 1 298 54 363 9.78e-115 335
MS.gene059698.t1 AT5G10030 56.913 311 120 5 1 298 54 363 9.78e-115 335
MS.gene059698.t1 AT5G65210 55.627 311 124 5 1 298 58 367 1.08e-112 330
MS.gene059698.t1 AT5G65210 55.627 311 124 5 1 298 58 367 1.08e-112 330
MS.gene059698.t1 AT5G65210 55.627 311 124 5 1 298 58 367 1.08e-112 330
MS.gene059698.t1 AT5G65210 55.627 311 124 5 1 298 58 367 1.08e-112 330
MS.gene059698.t1 AT5G65210 55.627 311 124 5 1 298 58 367 1.08e-112 330
MS.gene059698.t1 AT5G65210 55.627 311 124 5 1 298 58 367 1.08e-112 330
MS.gene059698.t1 AT5G65210 56.122 294 116 4 18 298 4 297 6.78e-110 321
MS.gene059698.t1 AT1G22070 53.000 300 118 6 16 297 88 382 1.38e-97 292
MS.gene059698.t1 AT1G77920 53.952 291 106 7 23 298 90 367 1.16e-96 290
MS.gene059698.t1 AT5G06950 46.780 295 124 8 26 297 46 330 1.85e-74 231
MS.gene059698.t1 AT5G06950 46.780 295 124 8 26 297 46 330 1.85e-74 231
MS.gene059698.t1 AT5G06950 46.780 295 124 8 26 297 46 330 1.85e-74 231
MS.gene059698.t1 AT5G06950 46.780 295 124 8 26 297 46 330 1.85e-74 231
MS.gene059698.t1 AT5G06950 46.780 295 124 8 26 297 46 330 1.85e-74 231
MS.gene059698.t1 AT3G12250 45.847 301 128 8 21 297 14 303 2.32e-74 230
MS.gene059698.t1 AT3G12250 45.847 301 128 8 21 297 41 330 3.44e-74 231
MS.gene059698.t1 AT3G12250 45.847 301 128 8 21 297 41 330 3.44e-74 231
MS.gene059698.t1 AT3G12250 45.847 301 128 8 21 297 41 330 3.44e-74 231
MS.gene059698.t1 AT3G12250 45.847 301 128 8 21 297 41 330 3.44e-74 231
MS.gene059698.t1 AT3G12250 45.847 301 128 8 21 297 35 324 6.06e-74 230
MS.gene059698.t1 AT3G12250 43.692 325 140 9 5 297 42 355 9.58e-74 230
MS.gene059698.t1 AT1G08320 44.366 284 138 6 26 297 54 329 1.27e-72 228
MS.gene059698.t1 AT1G08320 44.366 284 138 6 26 297 54 329 1.27e-72 228
MS.gene059698.t1 AT1G08320 44.366 284 138 6 26 297 178 453 3.84e-71 228
MS.gene059698.t1 AT1G08320 44.366 284 138 6 26 297 178 453 3.84e-71 228
MS.gene059698.t1 AT1G08320 44.366 284 138 6 26 297 178 453 3.84e-71 228
MS.gene059698.t1 AT5G06960 43.878 294 134 6 26 297 26 310 1.53e-69 218
MS.gene059698.t1 AT5G06960 43.878 294 134 6 26 297 46 330 2.24e-69 218
MS.gene059698.t1 AT5G06960 43.878 294 134 6 26 297 46 330 2.24e-69 218
MS.gene059698.t1 AT5G06839 40.256 313 151 7 16 297 108 415 5.65e-67 215
MS.gene059698.t1 AT5G06839 40.256 313 151 7 16 297 151 458 1.10e-66 215
MS.gene059698.t1 AT5G06839 39.172 314 154 6 16 297 108 416 2.63e-65 211
MS.gene059698.t1 AT1G68640 37.662 308 173 5 7 297 147 452 2.23e-55 186

Find 58 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATCAGTGATATACAAAT+TGG 0.178312 4.1:-9635716 MS.gene059698:CDS
GGATTGGATTCTAATAATTT+AGG 0.214016 4.1:-9636701 MS.gene059698:CDS
TAAGAGTCGTTTGAAGAAAA+AGG 0.214551 4.1:-9636996 MS.gene059698:intron
TGCTCGATGGCTGCTTGCTT+TGG 0.257053 4.1:-9634900 MS.gene059698:CDS
TAGTAACTGTGTTAGCTTCT+TGG 0.278886 4.1:+9637608 None:intergenic
ATTCCAACATTTGTCTGTTT+AGG 0.286691 4.1:+9635759 None:intergenic
TAGTCAGAGGATGCTTCTTT+TGG 0.297753 4.1:-9637661 MS.gene059698:CDS
CAAATTGGGGAACTTGTAAA+TGG 0.313309 4.1:-9635701 MS.gene059698:CDS
TTTGCTGGCTCTGTAAATTC+AGG 0.350309 4.1:-9636677 MS.gene059698:intron
GCATGACTTCTCAAGATTAT+AGG 0.355362 4.1:+9635383 None:intergenic
AAATTGCAGGGATTGTATAT+TGG 0.363352 4.1:-9636728 MS.gene059698:intron
AGCTAACACAGTTACTAATA+AGG 0.363384 4.1:-9637602 MS.gene059698:intron
GTGTCGTTTAAAGCTGTTAC+AGG 0.364560 4.1:-9636875 MS.gene059698:CDS
GCTCGATGGCTGCTTGCTTT+GGG 0.374474 4.1:-9634899 MS.gene059698:CDS
ATTGTATATTGGTGGTGGAT+TGG 0.406379 4.1:-9636717 MS.gene059698:CDS
AATAGAGAGGCTGGAAGCTC+TGG 0.410741 4.1:-9635243 MS.gene059698:CDS
AGGTGTTACCTTTAGAAGTT+CGG 0.411150 4.1:+9635544 None:intergenic
ATATCAGTGATATACAAATT+GGG 0.413722 4.1:-9635715 MS.gene059698:CDS
TCGACCCTCCGAACTTCTAA+AGG 0.428847 4.1:-9635552 MS.gene059698:intron
TAAGGGATTTGAGCAAACTT+TGG 0.444298 4.1:-9634859 MS.gene059698:CDS
GTGAATACTTTCAACGCCTA+AGG 0.464354 4.1:-9634877 MS.gene059698:CDS
AGATGCCCTTTCACAAGGTA+TGG 0.480625 4.1:-9635349 MS.gene059698:CDS
AGAGCTAGATCATACAAAAC+AGG 0.481991 4.1:-9636845 MS.gene059698:intron
GGATATTGCAATAGAGAGGC+TGG 0.484290 4.1:-9635252 MS.gene059698:CDS
AAAGGGCATCTTCTGCTTGT+CGG 0.484492 4.1:+9635361 None:intergenic
TAACTGTGTTAGCTTCTTGG+TGG 0.484546 4.1:+9637611 None:intergenic
TCTGGCTAGCTTTGTGAACC+AGG 0.487895 4.1:-9635225 MS.gene059698:intron
CAGGGATTGTATATTGGTGG+TGG 0.489623 4.1:-9636722 MS.gene059698:CDS
CTTGTTGACACAGTTGCAGC+AGG 0.514923 4.1:-9635309 MS.gene059698:CDS
AAAGTTTGCTCAAATCCCTT+AGG 0.521782 4.1:+9634861 None:intergenic
AGACCTAAACAGACAAATGT+TGG 0.522384 4.1:-9635762 MS.gene059698:CDS
TGCAGGTTCACGAGGACGAT+TGG 0.528063 4.1:+9634835 None:intergenic
CAGCAGGACAACCTCGTTGA+AGG 0.534793 4.1:-9635293 MS.gene059698:CDS
TGAATACTTTCAACGCCTAA+GGG 0.549102 4.1:-9634876 MS.gene059698:CDS
ATGTGGAAAACAACAGCTGA+AGG 0.550259 4.1:-9635599 MS.gene059698:CDS
AGACAAATGTTGGAATTGAA+AGG 0.555362 4.1:-9635752 MS.gene059698:CDS
ACAGGCTGATCATCTTCGAC+AGG 0.558370 4.1:-9634966 MS.gene059698:intron
CTCTTGCATGAAGACTATGC+AGG 0.569640 4.1:+9634818 None:intergenic
AGGAACTTACATTCCACAGA+TGG 0.575188 4.1:-9635273 MS.gene059698:CDS
CCGTACGTCAAACTGCTCGA+TGG 0.578154 4.1:-9634913 MS.gene059698:CDS
TATCAGTGATATACAAATTG+GGG 0.581840 4.1:-9635714 MS.gene059698:CDS
TTGCAGGGATTGTATATTGG+TGG 0.592067 4.1:-9636725 MS.gene059698:intron
TAAGATGGAGTATGAACACT+GGG 0.600728 4.1:-9635789 MS.gene059698:CDS
TGTTACCTTTAGAAGTTCGG+AGG 0.601165 4.1:+9635547 None:intergenic
TTAAGATGGAGTATGAACAC+TGG 0.603260 4.1:-9635790 MS.gene059698:CDS
AACCATTGACAGAGGAACAA+CGG 0.614266 4.1:-9635413 MS.gene059698:intron
GCAGAAGATGCCCTTTCACA+AGG 0.620831 4.1:-9635354 MS.gene059698:CDS
TCTATGTTATCACTGGCATG+TGG 0.630097 4.1:-9635616 MS.gene059698:CDS
CCATCGAGCAGTTTGACGTA+CGG 0.630335 4.1:+9634913 None:intergenic
TCTATTGCAATATCCATCTG+TGG 0.636700 4.1:+9635260 None:intergenic
GTTACCTTTAGAAGTTCGGA+GGG 0.640489 4.1:+9635548 None:intergenic
GAAGACTATGCAGGTTCACG+AGG 0.645466 4.1:+9634827 None:intergenic
AGATGGATATTGCAATAGAG+AGG 0.647680 4.1:-9635256 MS.gene059698:CDS
TGTGGAAAACAACAGCTGAA+GGG 0.647786 4.1:-9635598 MS.gene059698:CDS
GTTTGAAATAGTGATTCATG+AGG 0.660995 4.1:+9635678 None:intergenic
ACGTCTCGCACAAAATCGAG+AGG 0.680873 4.1:-9637026 MS.gene059698:CDS
GATGGAGTATGAACACTGGG+TGG 0.682481 4.1:-9635786 MS.gene059698:CDS
GAATGTAAGTTCCTTCAACG+AGG 0.734753 4.1:+9635282 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAACAAAATTTATTAGA+GGG - chr4.1:9636349-9636368 MS.gene059698:intron 15.0%
!! TAAGTAACAAAATTTATTAG+AGG - chr4.1:9636348-9636367 MS.gene059698:intron 15.0%
!! TTGACAATAATAAACTTAAT+TGG + chr4.1:9637504-9637523 None:intergenic 15.0%
!!! TAAGTTTTTATAAAGCAAAA+AGG + chr4.1:9636060-9636079 None:intergenic 15.0%
!!! TGATATATAATATTAGCTTT+GGG - chr4.1:9636583-9636602 MS.gene059698:intron 15.0%
!!! TTGATATATAATATTAGCTT+TGG - chr4.1:9636582-9636601 MS.gene059698:intron 15.0%
!! AATATATAACATACATTACC+TGG + chr4.1:9637286-9637305 None:intergenic 20.0%
!! ACAAAAGCAACATTAATTAA+AGG + chr4.1:9636211-9636230 None:intergenic 20.0%
!! ATATCAGTGATATACAAATT+GGG - chr4.1:9636775-9636794 MS.gene059698:intron 20.0%
!! CAAATTAAAAAGGTTAAACT+AGG - chr4.1:9637462-9637481 MS.gene059698:intron 20.0%
!! CACAAATTACCAAATTAAAA+AGG - chr4.1:9637452-9637471 MS.gene059698:intron 20.0%
!! CCTTTAACAAAATTTCAAAA+TGG + chr4.1:9635216-9635235 None:intergenic 20.0%
!! TAAGTTTATTATTGTCAAAC+AGG - chr4.1:9637506-9637525 MS.gene059698:intron 20.0%
!!! AAACTTTGAGAAAATTCTTT+AGG - chr4.1:9635998-9636017 MS.gene059698:intron 20.0%
!!! AGAAATAACAACTTTTAAGA+TGG - chr4.1:9636686-9636705 MS.gene059698:CDS 20.0%
!!! AGTTGTTATTTCTGTAAATT+AGG + chr4.1:9636679-9636698 None:intergenic 20.0%
!!! CCATTTTGAAATTTTGTTAA+AGG - chr4.1:9635213-9635232 MS.gene059698:intron 20.0%
!!! CTAGTTTAACCTTTTTAATT+TGG + chr4.1:9637464-9637483 None:intergenic 20.0%
!!! GAAATTTTGGAAGAAATTAT+TGG + chr4.1:9636432-9636451 None:intergenic 20.0%
! AACATTAATTAAAGGAAAGG+AGG + chr4.1:9636203-9636222 None:intergenic 25.0%
! ACATTAATTAAAGGAAAGGA+GGG + chr4.1:9636202-9636221 None:intergenic 25.0%
! AGCAACATTAATTAAAGGAA+AGG + chr4.1:9636206-9636225 None:intergenic 25.0%
! CAAAAAAGTGATTTCATCAT+AGG + chr4.1:9635903-9635922 None:intergenic 25.0%
! CATATCAGTGATATACAAAT+TGG - chr4.1:9636774-9636793 MS.gene059698:intron 25.0%
! CGTATAATTTAGATTAGATG+AGG - chr4.1:9637310-9637329 MS.gene059698:intron 25.0%
! GATATTGAACAATATGAAGT+AGG + chr4.1:9635699-9635718 None:intergenic 25.0%
! GGATTGGATTCTAATAATTT+AGG - chr4.1:9635789-9635808 MS.gene059698:CDS 25.0%
! TATCAGTGATATACAAATTG+GGG - chr4.1:9636776-9636795 MS.gene059698:intron 25.0%
!! CTTACTGCAGATATATATTT+TGG - chr4.1:9636076-9636095 MS.gene059698:intron 25.0%
!! TCAATCACATTAATCCATTT+TGG - chr4.1:9635137-9635156 MS.gene059698:intron 25.0%
!! TTTGGTAATTTGTGTGTTAA+TGG + chr4.1:9637446-9637465 None:intergenic 25.0%
!!! GTTGGTTTGTTATTAAATTC+TGG - chr4.1:9635835-9635854 MS.gene059698:intron 25.0%
!!! TCTAATAATTTAGGTTTTGC+TGG - chr4.1:9635798-9635817 MS.gene059698:CDS 25.0%
!!! TCTATTCTCAAACTAGTTTT+TGG - chr4.1:9636641-9636660 MS.gene059698:intron 25.0%
!!! TGCGTTTTTTTATGCTTATA+AGG - chr4.1:9635418-9635437 MS.gene059698:intron 25.0%
!!! TGTATGGACTATTTTTTACA+CGG - chr4.1:9635058-9635077 MS.gene059698:intron 25.0%
AAATTGCAGGGATTGTATAT+TGG - chr4.1:9635762-9635781 MS.gene059698:CDS 30.0%
AACCTACAAAATCAACTACA+AGG - chr4.1:9635967-9635986 MS.gene059698:intron 30.0%
ACCTACAAAATCAACTACAA+GGG - chr4.1:9635968-9635987 MS.gene059698:intron 30.0%
AGACAAATGTTGGAATTGAA+AGG - chr4.1:9636738-9636757 MS.gene059698:intron 30.0%
AGCTAACACAGTTACTAATA+AGG - chr4.1:9634888-9634907 MS.gene059698:CDS 30.0%
ATCGATATACTTGATCAACA+TGG - chr4.1:9636970-9636989 MS.gene059698:intron 30.0%
ATTCCAACATTTGTCTGTTT+AGG + chr4.1:9636734-9636753 None:intergenic 30.0%
ATTGCTCAATCAGTATTTCA+TGG - chr4.1:9635242-9635261 MS.gene059698:CDS 30.0%
CTAAGTTTCTACAAAGTTTG+AGG + chr4.1:9635303-9635322 None:intergenic 30.0%
CTGTCAATGGTTCAATTAAA+GGG + chr4.1:9637069-9637088 None:intergenic 30.0%
GAATAGAGTTCAATACAAGA+AGG + chr4.1:9636628-9636647 None:intergenic 30.0%
GAATCAAATGCTTGTTTGTT+TGG + chr4.1:9635555-9635574 None:intergenic 30.0%
TAAGAGTCGTTTGAAGAAAA+AGG - chr4.1:9635494-9635513 MS.gene059698:intron 30.0%
TCCATACATGTTTGATATGA+CGG + chr4.1:9635046-9635065 None:intergenic 30.0%
TCGATATACTTGATCAACAT+GGG - chr4.1:9636971-9636990 MS.gene059698:intron 30.0%
TCTGTCAATGGTTCAATTAA+AGG + chr4.1:9637070-9637089 None:intergenic 30.0%
TGGATTCAGAGTTTCAAAAT+TGG + chr4.1:9636412-9636431 None:intergenic 30.0%
TTAATGCAGAGAGAAATGTT+TGG - chr4.1:9636315-9636334 MS.gene059698:intron 30.0%
TTGAACTTAACATTGCACAT+GGG + chr4.1:9635087-9635106 None:intergenic 30.0%
TTTAATTGAACCATTGACAG+AGG - chr4.1:9637069-9637088 MS.gene059698:intron 30.0%
! AGAGAGAAATGTTTGGAATA+AGG - chr4.1:9636322-9636341 MS.gene059698:intron 30.0%
! GATGTTTTCTATGTTATCAC+TGG - chr4.1:9636867-9636886 MS.gene059698:CDS 30.0%
! GTTGATCAAGTATATCGATT+AGG + chr4.1:9636969-9636988 None:intergenic 30.0%
! GTTTGAAATAGTGATTCATG+AGG + chr4.1:9636815-9636834 None:intergenic 30.0%
! TGGGTTGAACAAAATTAATG+TGG + chr4.1:9635023-9635042 None:intergenic 30.0%
! TTCCAAAATTTCAAGTAAGC+TGG - chr4.1:9636440-9636459 MS.gene059698:intron 30.0%
! TTTTTCCATACCTTGTGAAA+GGG + chr4.1:9637149-9637168 None:intergenic 30.0%
!! ACTGCAGATATATATTTTGG+TGG - chr4.1:9636079-9636098 MS.gene059698:intron 30.0%
!! AGTTTTATCAGAAGTATGCA+TGG - chr4.1:9637408-9637427 MS.gene059698:intron 30.0%
!!! AGCATTTTAGAACCACATTT+TGG - chr4.1:9635336-9635355 MS.gene059698:CDS 30.0%
!!! GATGCTTCTTTTGGAATATT+GGG - chr4.1:9634838-9634857 MS.gene059698:CDS 30.0%
!!! GTATGGACTATTTTTTACAC+GGG - chr4.1:9635059-9635078 MS.gene059698:intron 30.0%
!!! TACTCCTGTGGAAATTTTTT+TGG - chr4.1:9636375-9636394 MS.gene059698:intron 30.0%
!!! TATGGACTATTTTTTACACG+GGG - chr4.1:9635060-9635079 MS.gene059698:intron 30.0%
AAAAGGACATGCATGCAAAA+AGG + chr4.1:9636043-9636062 None:intergenic 35.0%
AAAAGTCGACCAATCTGAAA+GGG - chr4.1:9635160-9635179 MS.gene059698:intron 35.0%
ACAAGGTATGGAAAAACTAC+AGG - chr4.1:9637153-9637172 MS.gene059698:intron 35.0%
ACATCCAAAATTTGGAAGCA+GGG + chr4.1:9635392-9635411 None:intergenic 35.0%
ACCGTCATATCAAACATGTA+TGG - chr4.1:9635042-9635061 MS.gene059698:intron 35.0%
AGACCTAAACAGACAAATGT+TGG - chr4.1:9636728-9636747 MS.gene059698:intron 35.0%
AGAGCTAGATCATACAAAAC+AGG - chr4.1:9635645-9635664 MS.gene059698:CDS 35.0%
AGATGGATATTGCAATAGAG+AGG - chr4.1:9637234-9637253 MS.gene059698:intron 35.0%
AGTGAGGTCATTGCTAAAAT+AGG + chr4.1:9636164-9636183 None:intergenic 35.0%
ATACATGTTTGATATGACGG+TGG + chr4.1:9635043-9635062 None:intergenic 35.0%
ATGTTTGTGATGAGATTTGC+AGG - chr4.1:9637036-9637055 MS.gene059698:CDS 35.0%
CAAATTGGGGAACTTGTAAA+TGG - chr4.1:9636789-9636808 MS.gene059698:intron 35.0%
CAAGAAGGAAAACATACTCA+AGG + chr4.1:9636613-9636632 None:intergenic 35.0%
CAAGGTATGGAAAAACTACA+GGG - chr4.1:9637154-9637173 MS.gene059698:intron 35.0%
CACAAACATACATTATGCCA+TGG + chr4.1:9637025-9637044 None:intergenic 35.0%
CACACCAAAAAAATTTCCAC+AGG + chr4.1:9636382-9636401 None:intergenic 35.0%
CATCAAGAGATTGACAAATG+AGG + chr4.1:9635737-9635756 None:intergenic 35.0%
CGATATACTTGATCAACATG+GGG - chr4.1:9636972-9636991 MS.gene059698:intron 35.0%
CTTGATGCAACAAAATTGCA+GGG - chr4.1:9635750-9635769 MS.gene059698:CDS 35.0%
GCATGACTTCTCAAGATTAT+AGG + chr4.1:9637110-9637129 None:intergenic 35.0%
GTCGTTTGAAGAAAAAGGTT+TGG - chr4.1:9635499-9635518 MS.gene059698:intron 35.0%
GTTGAACTTAACATTGCACA+TGG + chr4.1:9635088-9635107 None:intergenic 35.0%
TAAAACTTATACTCCTGCCA+TGG + chr4.1:9637395-9637414 None:intergenic 35.0%
TAAGATGGAGTATGAACACT+GGG - chr4.1:9636701-9636720 MS.gene059698:CDS 35.0%
TAAGGGATTTGAGCAAACTT+TGG - chr4.1:9637631-9637650 MS.gene059698:CDS 35.0%
TACATGTTTGATATGACGGT+GGG + chr4.1:9635042-9635061 None:intergenic 35.0%
TCTATTGCAATATCCATCTG+TGG + chr4.1:9637233-9637252 None:intergenic 35.0%
TCTTGATGCAACAAAATTGC+AGG - chr4.1:9635749-9635768 MS.gene059698:CDS 35.0%
TGAATACTTTCAACGCCTAA+GGG - chr4.1:9637614-9637633 MS.gene059698:CDS 35.0%
TGTCACTGCTCTTATAAATG+TGG - chr4.1:9635873-9635892 MS.gene059698:intron 35.0%
TTAAGATGGAGTATGAACAC+TGG - chr4.1:9636700-9636719 MS.gene059698:CDS 35.0%
TTAGACACTACATTCTGTTC+TGG - chr4.1:9636559-9636578 MS.gene059698:intron 35.0%
TTAGATGAGGTTATGAGTAG+TGG - chr4.1:9637323-9637342 MS.gene059698:intron 35.0%
TTGAGGCATAAGGAAAGAAT+GGG + chr4.1:9635286-9635305 None:intergenic 35.0%
! AAAGTTTGCTCAAATCCCTT+AGG + chr4.1:9637632-9637651 None:intergenic 35.0%
! AGCCAGCTTACTTGAAATTT+TGG + chr4.1:9636445-9636464 None:intergenic 35.0%
! AGGTGTTACCTTTAGAAGTT+CGG + chr4.1:9636949-9636968 None:intergenic 35.0%
! GTTTTTCCATACCTTGTGAA+AGG + chr4.1:9637150-9637169 None:intergenic 35.0%
! TAGTAACTGTGTTAGCTTCT+TGG + chr4.1:9634885-9634904 None:intergenic 35.0%
! TCTACAAAGTTTGAGGCATA+AGG + chr4.1:9635296-9635315 None:intergenic 35.0%
! TTGTCGCTTCAACATAATCA+AGG - chr4.1:9634995-9635014 MS.gene059698:intron 35.0%
! TTTGAGGCATAAGGAAAGAA+TGG + chr4.1:9635287-9635306 None:intergenic 35.0%
!! ATTGGTCGACTTTTCCAAAA+TGG + chr4.1:9635154-9635173 None:intergenic 35.0%
!! ATTGTATATTGGTGGTGGAT+TGG - chr4.1:9635773-9635792 MS.gene059698:CDS 35.0%
!! TCCCTTGTAGTTGATTTTGT+AGG + chr4.1:9635972-9635991 None:intergenic 35.0%
!!! GCAGATATATATTTTGGTGG+TGG - chr4.1:9636082-9636101 MS.gene059698:intron 35.0%
!!! GGATGCTTCTTTTGGAATAT+TGG - chr4.1:9634837-9634856 MS.gene059698:CDS 35.0%
AACCATTGACAGAGGAACAA+CGG - chr4.1:9637077-9637096 MS.gene059698:intron 40.0%
AATAGGATTTGAGTAGCTGC+TGG + chr4.1:9636147-9636166 None:intergenic 40.0%
AGGAACTTACATTCCACAGA+TGG - chr4.1:9637217-9637236 MS.gene059698:intron 40.0%
ATGTGGAAAACAACAGCTGA+AGG - chr4.1:9636891-9636910 MS.gene059698:CDS 40.0%
CAAGCCAGACATCCAAAATT+TGG + chr4.1:9635400-9635419 None:intergenic 40.0%
CATCCAAAATTTGGAAGCAG+GGG + chr4.1:9635391-9635410 None:intergenic 40.0%
GAAAAGTCGACCAATCTGAA+AGG - chr4.1:9635159-9635178 MS.gene059698:intron 40.0%
GAATGTAAGTTCCTTCAACG+AGG + chr4.1:9637211-9637230 None:intergenic 40.0%
GACACAACAGTTATGAGTAG+TGG - chr4.1:9637355-9637374 MS.gene059698:intron 40.0%
GACATCCAAAATTTGGAAGC+AGG + chr4.1:9635393-9635412 None:intergenic 40.0%
GAGTATCTGAATGTACAGTG+AGG + chr4.1:9636180-9636199 None:intergenic 40.0%
GATTCCTGACGTTTCATAAC+AGG - chr4.1:9635570-9635589 MS.gene059698:CDS 40.0%
GTGAATACTTTCAACGCCTA+AGG - chr4.1:9637613-9637632 MS.gene059698:CDS 40.0%
TATGTTGAAGCGACAAAGTG+CGG + chr4.1:9634991-9635010 None:intergenic 40.0%
TCTATGTTATCACTGGCATG+TGG - chr4.1:9636874-9636893 MS.gene059698:CDS 40.0%
TGCAAAGTGAGTCCAAAATG+TGG + chr4.1:9635351-9635370 None:intergenic 40.0%
TGGAAAACAATGCTGATCCA+TGG - chr4.1:9637375-9637394 MS.gene059698:intron 40.0%
TGTGGAAAACAACAGCTGAA+GGG - chr4.1:9636892-9636911 MS.gene059698:CDS 40.0%
TTGCAGGGATTGTATATTGG+TGG - chr4.1:9635765-9635784 MS.gene059698:CDS 40.0%
! CTGCTGTCATATTTCTACCA+TGG - chr4.1:9637005-9637024 MS.gene059698:CDS 40.0%
! GAAGGGTTTTTCTTGTGGAT+TGG - chr4.1:9636909-9636928 MS.gene059698:intron 40.0%
! GCTTCCAAATTTTGGATGTC+TGG - chr4.1:9635393-9635412 MS.gene059698:CDS 40.0%
! GTTACCTTTAGAAGTTCGGA+GGG + chr4.1:9636945-9636964 None:intergenic 40.0%
! TAACTGTGTTAGCTTCTTGG+TGG + chr4.1:9634882-9634901 None:intergenic 40.0%
! TGTTACCTTTAGAAGTTCGG+AGG + chr4.1:9636946-9636965 None:intergenic 40.0%
! TTGCTACTTGCTTGATATCG+CGG - chr4.1:9634921-9634940 MS.gene059698:CDS 40.0%
!! GTGTCGTTTAAAGCTGTTAC+AGG - chr4.1:9635615-9635634 MS.gene059698:CDS 40.0%
!! TTTGCTGGCTCTGTAAATTC+AGG - chr4.1:9635813-9635832 MS.gene059698:intron 40.0%
AAACAATGCTGATCCATGGC+AGG - chr4.1:9637379-9637398 MS.gene059698:intron 45.0%
AACCGTTGTTCCTCTGTCAA+TGG + chr4.1:9637082-9637101 None:intergenic 45.0%
ACTTTGCACTGCAGATTAGG+AGG - chr4.1:9635363-9635382 MS.gene059698:CDS 45.0%
AGATGCCCTTTCACAAGGTA+TGG - chr4.1:9637141-9637160 MS.gene059698:intron 45.0%
AGGCCAATAAGCCCTAGTTT+AGG + chr4.1:9636109-9636128 None:intergenic 45.0%
CAGGGATTGTATATTGGTGG+TGG - chr4.1:9635768-9635787 MS.gene059698:CDS 45.0%
CTCACTTTGCACTGCAGATT+AGG - chr4.1:9635360-9635379 MS.gene059698:CDS 45.0%
CTTTGCACTGCAGATTAGGA+GGG - chr4.1:9635364-9635383 MS.gene059698:CDS 45.0%
GCTGGCTATTATGTACCTAG+TGG - chr4.1:9636458-9636477 MS.gene059698:intron 45.0%
GGACCTAAACTAGGGCTTAT+TGG - chr4.1:9636103-9636122 MS.gene059698:intron 45.0%
GGATATTGCAATAGAGAGGC+TGG - chr4.1:9637238-9637257 MS.gene059698:intron 45.0%
GTGATGAGATTTGCAGGTTC+TGG - chr4.1:9637042-9637061 MS.gene059698:intron 45.0%
TGAGCCTGTTATGAAACGTC+AGG + chr4.1:9635577-9635596 None:intergenic 45.0%
! CAGCTGAAGGGTTTTTCTTG+TGG - chr4.1:9636904-9636923 MS.gene059698:intron 45.0%
!! AAAGGGCATCTTCTGCTTGT+CGG + chr4.1:9637132-9637151 None:intergenic 45.0%
!! ATTAGAGGGTACTACTCCTG+TGG - chr4.1:9636363-9636382 MS.gene059698:intron 45.0%
!! CTGGCTCTGTAAATTCAGGT+TGG - chr4.1:9635817-9635836 MS.gene059698:intron 45.0%
!! TTGGTGGTGGACCTAAACTA+GGG - chr4.1:9636095-9636114 MS.gene059698:intron 45.0%
!! TTTGGTGGTGGACCTAAACT+AGG - chr4.1:9636094-9636113 MS.gene059698:intron 45.0%
!!! GGGTTTTTCTTGTGGATTGG+AGG - chr4.1:9636912-9636931 MS.gene059698:intron 45.0%
AATAGAGAGGCTGGAAGCTC+TGG - chr4.1:9637247-9637266 MS.gene059698:intron 50.0%
ACAGGCTGATCATCTTCGAC+AGG - chr4.1:9637524-9637543 MS.gene059698:intron 50.0%
ACGTCTCGCACAAAATCGAG+AGG - chr4.1:9635464-9635483 MS.gene059698:intron 50.0%
CCATCGAGCAGTTTGACGTA+CGG + chr4.1:9637580-9637599 None:intergenic 50.0%
CTTGTTGACACAGTTGCAGC+AGG - chr4.1:9637181-9637200 MS.gene059698:intron 50.0%
GATGGAGTATGAACACTGGG+TGG - chr4.1:9636704-9636723 MS.gene059698:CDS 50.0%
GATTTGAGTAGCTGCTGGTC+TGG + chr4.1:9636142-9636161 None:intergenic 50.0%
GCAGAAGATGCCCTTTCACA+AGG - chr4.1:9637136-9637155 MS.gene059698:intron 50.0%
TCGACCCTCCGAACTTCTAA+AGG - chr4.1:9636938-9636957 MS.gene059698:intron 50.0%
TCGCATCAGCCCTTTCAGAT+TGG + chr4.1:9635172-9635191 None:intergenic 50.0%
TTGTACACAGTGCTGCCACT+AGG + chr4.1:9636476-9636495 None:intergenic 50.0%
! GGCTTATTGGCCTCACCATT+GGG - chr4.1:9636116-9636135 MS.gene059698:intron 50.0%
! GGTCCCCTGCTTCCAAATTT+TGG - chr4.1:9635385-9635404 MS.gene059698:CDS 50.0%
!! TCTGGCTAGCTTTGTGAACC+AGG - chr4.1:9637265-9637284 MS.gene059698:intron 50.0%
CAGCAGGACAACCTCGTTGA+AGG - chr4.1:9637197-9637216 MS.gene059698:intron 55.0%
CCGTACGTCAAACTGCTCGA+TGG - chr4.1:9637577-9637596 MS.gene059698:intron 55.0%
GCTCGATGGCTGCTTGCTTT+GGG - chr4.1:9637591-9637610 MS.gene059698:intron 55.0%
TGCAGGTTCACGAGGACGAT+TGG + chr4.1:9637658-9637677 None:intergenic 55.0%
TGCTCGATGGCTGCTTGCTT+TGG - chr4.1:9637590-9637609 MS.gene059698:intron 55.0%
! GGGCTTATTGGCCTCACCAT+TGG - chr4.1:9636115-9636134 MS.gene059698:intron 55.0%
! TAGCTGCTGGTCTGGCCCAA+TGG + chr4.1:9636134-9636153 None:intergenic 60.0%
! GCTGGTCTGGCCCAATGGTG+AGG + chr4.1:9636129-9636148 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 9634832 9637680 9634832 ID=MS.gene059698
chr4.1 mRNA 9634832 9637680 9634832 ID=MS.gene059698.t1;Parent=MS.gene059698
chr4.1 exon 9637603 9637680 9637603 ID=MS.gene059698.t1.exon1;Parent=MS.gene059698.t1
chr4.1 CDS 9637603 9637680 9637603 ID=cds.MS.gene059698.t1;Parent=MS.gene059698.t1
chr4.1 exon 9636997 9637056 9636997 ID=MS.gene059698.t1.exon2;Parent=MS.gene059698.t1
chr4.1 CDS 9636997 9637056 9636997 ID=cds.MS.gene059698.t1;Parent=MS.gene059698.t1
chr4.1 exon 9636846 9636920 9636846 ID=MS.gene059698.t1.exon3;Parent=MS.gene059698.t1
chr4.1 CDS 9636846 9636920 9636846 ID=cds.MS.gene059698.t1;Parent=MS.gene059698.t1
chr4.1 exon 9636678 9636741 9636678 ID=MS.gene059698.t1.exon4;Parent=MS.gene059698.t1
chr4.1 CDS 9636678 9636741 9636678 ID=cds.MS.gene059698.t1;Parent=MS.gene059698.t1
chr4.1 exon 9635553 9635824 9635553 ID=MS.gene059698.t1.exon5;Parent=MS.gene059698.t1
chr4.1 CDS 9635553 9635824 9635553 ID=cds.MS.gene059698.t1;Parent=MS.gene059698.t1
chr4.1 exon 9635226 9635423 9635226 ID=MS.gene059698.t1.exon6;Parent=MS.gene059698.t1
chr4.1 CDS 9635226 9635423 9635226 ID=cds.MS.gene059698.t1;Parent=MS.gene059698.t1
chr4.1 exon 9634832 9634984 9634832 ID=MS.gene059698.t1.exon7;Parent=MS.gene059698.t1
chr4.1 CDS 9634832 9634984 9634832 ID=cds.MS.gene059698.t1;Parent=MS.gene059698.t1
Gene Sequence

>MS.gene059698

TCAGAGGATGCTTCTTTTGGAATATTGGGAACATCTATCAAGTATGACCACCAAGAAGCTAACACAGTTACTAATAAGGTAAGATTGTGTTGCTACTTGCTTGATATCGCGGTGAGTTTGTCAAAATCACAGTGAGCTATCGTGATTTTGCAAAAGCCGCACTTTGTCGCTTCAACATAATCAAGGTACCACATTAATTTTGTTCAACCCACCGTCATATCAAACATGTATGGACTATTTTTTACACGGGGACCCATGTGCAATGTTAAGTTCAACTTGATACTTTTAAAAGAACAAAAAAAACTTCAATCACATTAATCCATTTTGGAAAAGTCGACCAATCTGAAAGGGCTGATGCGATAAATTTTTTACTTTCAGAGACCATTTTGAAATTTTGTTAAAGGAACTGAATTGCTCAATCAGTATTTCATGGACTAAATTGATGATACATCCCATTCTTTCCTTATGCCTCAAACTTTGTAGAAACTTAGAGTGACATCGAAAAGCATTTTAGAACCACATTTTGGACTCACTTTGCACTGCAGATTAGGAGGGTCCCCTGCTTCCAAATTTTGGATGTCTGGCTTGCGTTTTTTTATGCTTATAAGGTGATGAAACATGCAGATGCAAAGACGTCTCGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGAAGAAAAAGGTTTGGACTTTTATACTTCATACATTCAAAGATGTACCAAACAAACAAGCATTTGATTCCTGACGTTTCATAACAGGCTCATATACAACAGTTAGAATCGTGTCGTTTAAAGCTGTTACAGGTAGAGCAAGAGCTAGATCATACAAAACAGGTAATGTGAAGATGAGTTAATAATATACTCCTACTTCATATTGTTCAATATCTACTTGTTTTTCTCTCCTCATTTGTCAATCTCTTGATGCAACAAAATTGCAGGGATTGTATATTGGTGGTGGATTGGATTCTAATAATTTAGGTTTTGCTGGCTCTGTAAATTCAGGTTGGTTTGTTATTAAATTCTGGTTCTTGATATTGATTTGTCACTGCTCTTATAAATGTGGTTATCCTATGATGAAATCACTTTTTTGTTTATTTTTAAATCATTTACATACTCTTATAAAAAAAACTCAATAACCTACAAAATCAACTACAAGGGATAAAGCAAACTTTGAGAAAATTCTTTAGGTTATGTGCTTTAGTTTGAACCTTTTTGCATGCATGTCCTTTTTGCTTTATAAAAACTTACTGCAGATATATATTTTGGTGGTGGACCTAAACTAGGGCTTATTGGCCTCACCATTGGGCCAGACCAGCAGCTACTCAAATCCTATTTTAGCAATGACCTCACTGTACATTCAGATACTCCCTCCTTTCCTTTAATTAATGTTGCTTTTGTAGAATTTTTTTGTTTCTATTCATTCGTCGTTTTCAAAGTTCAAATGCAACATTAACTATTGTTTAGTTAAGTACACTTAACTATTTAATGCAGAGAGAAATGTTTGGAATAAGGTAATAAGTAACAAAATTTATTAGAGGGTACTACTCCTGTGGAAATTTTTTTGGTGTGAATTCAACCAATTTTGAAACTCTGAATCCAATAATTTCTTCCAAAATTTCAAGTAAGCTGGCTATTATGTACCTAGTGGCAGCACTGTGTACAACTTTCATGAATCTAATTGAAACTATAATATTGTTCAGAGAGTTCTTAAGCTGTGCAGTAAAGTTTAGACACTACATTCTGTTCTGGTTGATATATAATATTAGCTTTGGGCTCTCCTTGAGTATGTTTTCCTTCTTGTATTGAACTCTATTCTCAAACTAGTTTTTGGACTCTAAATACACCTAATTTACAGAAATAACAACTTTTAAGATGGAGTATGAACACTGGGTGGAAGACCTAAACAGACAAATGTTGGAATTGAAAGGTGCTTTAAGTGCTCATATCAGTGATATACAAATTGGGGAACTTGTAAATGGCCTCATGAATCACTATTTCAAACTATTTTGCATGAAATCTGATGCTGCAAAAGTAGATGTTTTCTATGTTATCACTGGCATGTGGAAAACAACAGCTGAAGGGTTTTTCTTGTGGATTGGAGGTTTTCGACCCTCCGAACTTCTAAAGGTAACACCTAATCGATATACTTGATCAACATGGGGTTATTTATTTCTGCTGTCATATTTCTACCATGGCATAATGTATGTTTGTGATGAGATTTGCAGGTTCTGGTCCCTTTAATTGAACCATTGACAGAGGAACAACGGTTTGATGCCTATAATCTTGAGAAGTCATGCCGACAAGCAGAAGATGCCCTTTCACAAGGTATGGAAAAACTACAGGGAATGCTTGTTGACACAGTTGCAGCAGGACAACCTCGTTGAAGGAACTTACATTCCACAGATGGATATTGCAATAGAGAGGCTGGAAGCTCTGGCTAGCTTTGTGAACCAGGTAATGTATGTTATATATTTCTTCGTATAATTTAGATTAGATGAGGTTATGAGTAGTGGAAAACGTGTGACACAACAGTTATGAGTAGTGGAAAACAATGCTGATCCATGGCAGGAGTATAAGTTTTATCAGAAGTATGCATGGCAAGAGTATATTCCATTAACACACAAATTACCAAATTAAAAAGGTTAAACTAGGCTACTAGAAAATTGAACCAATTAAGTTTATTATTGTCAAACAGGCTGATCATCTTCGACAGGAAACGTTGCAACAGATGTCTCGAATACTTACCGTACGTCAAACTGCTCGATGGCTGCTTGCTTTGGGTGAATACTTTCAACGCCTAAGGGATTTGAGCAAACTTTGGACCAATCGTCCTCGTGAACCTGCATAG

Protein sequence

>MS.gene059698.t1

SEDASFGILGTSIKYDHQEANTVTNKMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLLQVEQELDHTKQGLYIGGGLDSNNLGFAGSVNSEITTFKMEYEHWVEDLNRQMLELKGALSAHISDIQIGELVNGLMNHYFKLFCMKSDAAKVDVFYVITGMWKTTAEGFFLWIGGFRPSELLKRNNGLMPIILRSHADKQKMPFHKVWKNYRECLLTQLQQDNLVEGTYIPQMDIAIERLEALASFVNQADHLRQETLQQMSRILTVRQTARWLLALGEYFQRLRDLSKLWTNRPREPA