Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059748.t1 | XP_013464613.1 | 89 | 218 | 1 | 2 | 1 | 195 | 1 | 218 | 1.30E-106 | 395.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059748.t1 | F4JL28 | 75.1 | 217 | 23 | 3 | 1 | 186 | 1 | 217 | 3.4e-90 | 332.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059748.t1 | I3T296 | 89.0 | 218 | 1 | 2 | 1 | 195 | 1 | 218 | 9.7e-107 | 395.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene059748.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059748 | MS.gene014250 | PPI |
| MS.gene059748 | MS.gene68787 | PPI |
| MS.gene059748 | MS.gene063136 | PPI |
| MS.gene059748 | MS.gene68192 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059748.t1 | MTR_2g078310 | 88.991 | 218 | 1 | 2 | 1 | 195 | 1 | 218 | 5.49e-141 | 392 |
| MS.gene059748.t1 | MTR_3g117270 | 57.991 | 219 | 65 | 4 | 1 | 193 | 1 | 218 | 2.23e-89 | 261 |
| MS.gene059748.t1 | MTR_3g117270 | 57.547 | 212 | 63 | 4 | 1 | 186 | 1 | 211 | 1.48e-85 | 251 |
| MS.gene059748.t1 | MTR_3g117270 | 61.818 | 165 | 37 | 3 | 1 | 139 | 1 | 165 | 9.14e-70 | 209 |
| MS.gene059748.t1 | MTR_3g117270 | 61.585 | 164 | 37 | 3 | 1 | 138 | 1 | 164 | 3.49e-68 | 206 |
| MS.gene059748.t1 | MTR_3g117280 | 55.056 | 178 | 70 | 3 | 22 | 193 | 23 | 196 | 8.74e-68 | 206 |
| MS.gene059748.t1 | MTR_2g090365 | 56.842 | 190 | 56 | 4 | 1 | 166 | 263 | 450 | 1.18e-62 | 201 |
| MS.gene059748.t1 | MTR_5g097190 | 43.411 | 129 | 57 | 5 | 54 | 166 | 15 | 143 | 5.02e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059748.t1 | AT4G22140 | 75.446 | 224 | 24 | 3 | 1 | 193 | 1 | 224 | 9.75e-121 | 341 |
| MS.gene059748.t1 | AT4G22140 | 75.115 | 217 | 23 | 3 | 1 | 186 | 1 | 217 | 1.70e-116 | 330 |
| MS.gene059748.t1 | AT4G22140 | 75.115 | 217 | 23 | 3 | 1 | 186 | 1 | 217 | 1.70e-116 | 330 |
| MS.gene059748.t1 | AT4G04260 | 72.093 | 172 | 40 | 3 | 21 | 185 | 8 | 178 | 1.13e-82 | 243 |
| MS.gene059748.t1 | AT4G04260 | 71.264 | 174 | 42 | 3 | 19 | 185 | 19 | 191 | 1.46e-82 | 243 |
| MS.gene059748.t1 | AT4G39100 | 56.075 | 214 | 68 | 4 | 1 | 190 | 1 | 212 | 6.93e-79 | 235 |
| MS.gene059748.t1 | AT4G39100 | 59.509 | 163 | 42 | 3 | 1 | 139 | 1 | 163 | 1.18e-63 | 194 |
| MS.gene059748.t1 | AT4G04260 | 70.714 | 140 | 23 | 3 | 1 | 122 | 1 | 140 | 3.07e-62 | 190 |
Find 52 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCGAAGAAGCAAAGAAAT+TGG | 0.293372 | 2.4:+20150164 | MS.gene059748:CDS |
| ATTAGGTCATCCGGGTTATA+AGG | 0.334913 | 2.4:-20149447 | None:intergenic |
| CTTCCACCAATAGATTCTTC+AGG | 0.349796 | 2.4:-20149084 | None:intergenic |
| CACTGCACCATTAGGTCATC+CGG | 0.369370 | 2.4:-20149456 | None:intergenic |
| CTATCAGATCCTGGTGATAC+AGG | 0.385003 | 2.4:-20150249 | None:intergenic |
| AACATTCAGAACAAACAAAA+TGG | 0.403224 | 2.4:-20150188 | None:intergenic |
| AGAAGATCGAGCAAGATAAT+AGG | 0.403757 | 2.4:+20149025 | MS.gene059748:CDS |
| GTTCTGAGGATTACTATTGT+AGG | 0.415271 | 2.4:+20149232 | MS.gene059748:CDS |
| ACCCTTCACACTGCACCATT+AGG | 0.433071 | 2.4:-20149464 | None:intergenic |
| GGTGGAAGAAGACAGTTTCA+TGG | 0.437599 | 2.4:+20149099 | MS.gene059748:CDS |
| CAAAGTGCTCACACTATTGA+AGG | 0.439100 | 2.4:+20149159 | MS.gene059748:CDS |
| TTATAACCCGGATGACCTAA+TGG | 0.443180 | 2.4:+20149449 | MS.gene059748:CDS |
| GGTCCTCTCTTTCGCCGCTT+CGG | 0.470540 | 2.4:-20151825 | None:intergenic |
| CTCACCTTGCTATCAGATCC+TGG | 0.485170 | 2.4:-20150258 | None:intergenic |
| CTTCTCCACACGTGCCACAT+AGG | 0.490109 | 2.4:-20149007 | None:intergenic |
| GAGCACTTTGAACATCAAAA+TGG | 0.494985 | 2.4:-20149146 | None:intergenic |
| TATAGACCTGAAGAATCTAT+TGG | 0.496809 | 2.4:+20149078 | MS.gene059748:CDS |
| TAGGTACCATCCTGCTTGTG+TGG | 0.503860 | 2.4:+20150134 | MS.gene059748:intron |
| TTTGAGTATAAAGCTGCTAC+TGG | 0.508499 | 2.4:+20149255 | MS.gene059748:CDS |
| ACTCACACAGCAACACGGTC+GGG | 0.520615 | 2.4:-20149288 | None:intergenic |
| TTCTCCACACGTGCCACATA+GGG | 0.531360 | 2.4:-20149006 | None:intergenic |
| GAGCCGAAGCGGCGAAAGAG+AGG | 0.538999 | 2.4:+20151822 | MS.gene059748:CDS |
| CACATGGCGAAGACAAGACC+AGG | 0.545829 | 2.4:+20148676 | None:intergenic |
| TATACTAAGCTTGAGAATGT+AGG | 0.549874 | 2.4:+20149210 | MS.gene059748:CDS |
| AAGACAGTTTCATGGAGCTA+AGG | 0.559466 | 2.4:+20149107 | MS.gene059748:CDS |
| GACCTAATGGTGCAGTGTGA+AGG | 0.564361 | 2.4:+20149462 | MS.gene059748:CDS |
| AACTCACACAGCAACACGGT+CGG | 0.568569 | 2.4:-20149289 | None:intergenic |
| AAGATAATAGGAACAATGTG+AGG | 0.571957 | 2.4:+20149037 | MS.gene059748:CDS |
| GCTTGAGAATGTAGGTTCTG+AGG | 0.572249 | 2.4:+20149218 | MS.gene059748:CDS |
| ATAGTCATGCCCACACAAGC+AGG | 0.572617 | 2.4:-20150144 | None:intergenic |
| CACGAGTAAGCCACCCTATG+TGG | 0.577004 | 2.4:+20148993 | MS.gene059748:intron |
| AGTGTGAAGGGTGCAAGGAT+TGG | 0.587494 | 2.4:+20149475 | MS.gene059748:CDS |
| GCCACCCTATGTGGCACGTG+TGG | 0.588251 | 2.4:+20149002 | MS.gene059748:intron |
| ATGCGAGATGCCTTATAACC+CGG | 0.597197 | 2.4:+20149437 | MS.gene059748:intron |
| TCCACACGTGCCACATAGGG+TGG | 0.599622 | 2.4:-20149003 | None:intergenic |
| AGACCTGAAGAATCTATTGG+TGG | 0.602382 | 2.4:+20149081 | MS.gene059748:CDS |
| ACCTAATGGTGCAGTGTGAA+GGG | 0.605001 | 2.4:+20149463 | MS.gene059748:CDS |
| ACTGCACCATTAGGTCATCC+GGG | 0.612849 | 2.4:-20149455 | None:intergenic |
| CGATGATTTGAAGAAACCAC+AGG | 0.614767 | 2.4:+20150218 | MS.gene059748:CDS |
| AGGTACCATCCTGCTTGTGT+GGG | 0.617835 | 2.4:+20150135 | MS.gene059748:intron |
| CACAATCAGAGGAACAAACA+AGG | 0.620724 | 2.4:+20148720 | MS.gene059748:CDS |
| GCGGCGTTTCCTGTATCACC+AGG | 0.621923 | 2.4:+20150240 | MS.gene059748:CDS |
| ATCACCAGGATCTGATAGCA+AGG | 0.624737 | 2.4:+20150254 | MS.gene059748:CDS |
| ATGTGAGGGTTCGTGTGAGA+TGG | 0.629136 | 2.4:+20149052 | MS.gene059748:CDS |
| GATACAGGAAACGCCGCCTG+TGG | 0.630270 | 2.4:-20150234 | None:intergenic |
| ATGGACTCTTACACAATCAG+AGG | 0.631954 | 2.4:+20148709 | MS.gene059748:CDS |
| AAAGTGCTCACACTATTGAA+GGG | 0.633847 | 2.4:+20149160 | MS.gene059748:CDS |
| GGTGCAGTGTGAAGGGTGCA+AGG | 0.638726 | 2.4:+20149470 | MS.gene059748:CDS |
| AGATAATAGGAACAATGTGA+GGG | 0.647787 | 2.4:+20149038 | MS.gene059748:CDS |
| TCATGCCCACACAAGCAGGA+TGG | 0.663384 | 2.4:-20150140 | None:intergenic |
| ATAAAACTCACACAGCAACA+CGG | 0.709234 | 2.4:-20149293 | None:intergenic |
| TGATTTGAAGAAACCACAGG+CGG | 0.754665 | 2.4:+20150221 | MS.gene059748:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATTTACAAAAATTTA+CGG | - | chr2.4:20151048-20151067 | None:intergenic | 10.0% |
| !! | CATATATTCTAATTAAAATT+TGG | + | chr2.4:20150449-20150468 | MS.gene059748:intron | 10.0% |
| !! | TGAAAAAAAATAACATATAA+GGG | + | chr2.4:20150818-20150837 | MS.gene059748:intron | 10.0% |
| !! | TTGAAAAAAAATAACATATA+AGG | + | chr2.4:20150817-20150836 | MS.gene059748:intron | 10.0% |
| !! | TCAAATTTACAAAAATTTAC+GGG | - | chr2.4:20151047-20151066 | None:intergenic | 15.0% |
| !!! | AAAGAATTTTGAGAAAAAAA+CGG | - | chr2.4:20150520-20150539 | None:intergenic | 15.0% |
| !!! | ATTTAGTTCTAAATATTATG+AGG | + | chr2.4:20150302-20150321 | MS.gene059748:intron | 15.0% |
| !!! | ATTTTGTGAGTAATAAATAA+TGG | + | chr2.4:20151636-20151655 | MS.gene059748:intron | 15.0% |
| !!! | TCAAGTTTTTTATTCTTTTT+TGG | + | chr2.4:20151671-20151690 | MS.gene059748:intron | 15.0% |
| !!! | TTTAAATTTTGTGTTTTTTG+AGG | + | chr2.4:20148901-20148920 | MS.gene059748:intron | 15.0% |
| !! | CAAATACTCAAAATTCAATT+AGG | - | chr2.4:20149351-20149370 | None:intergenic | 20.0% |
| !! | TAATCAGTAGTTAATATCTA+GGG | + | chr2.4:20151125-20151144 | MS.gene059748:intron | 20.0% |
| !! | TACCTTTCATAAAATATAGA+AGG | - | chr2.4:20150089-20150108 | None:intergenic | 20.0% |
| !! | TTATAATTAACAATCAACCT+TGG | + | chr2.4:20149836-20149855 | MS.gene059748:intron | 20.0% |
| !! | TTATATTTAAGCTTATCTGA+TGG | + | chr2.4:20151164-20151183 | MS.gene059748:intron | 20.0% |
| !!! | AATTTTAGCTCTTGTATTAA+CGG | - | chr2.4:20149818-20149837 | None:intergenic | 20.0% |
| !!! | ACATAATCTCTTTTAATCAA+TGG | + | chr2.4:20151694-20151713 | MS.gene059748:intron | 20.0% |
| !!! | ACCACATTTAAAATTTGTAA+AGG | - | chr2.4:20150641-20150660 | None:intergenic | 20.0% |
| !!! | ACCTTTACAAATTTTAAATG+TGG | + | chr2.4:20150637-20150656 | MS.gene059748:intron | 20.0% |
| !!! | ATTATTTTGATTGACACTAT+AGG | + | chr2.4:20151740-20151759 | MS.gene059748:intron | 20.0% |
| !!! | GCAAAAGATTATTGAATTTT+TGG | + | chr2.4:20150014-20150033 | MS.gene059748:intron | 20.0% |
| !!! | GTTGTTTTTATAAGCAATAT+TGG | - | chr2.4:20151281-20151300 | None:intergenic | 20.0% |
| !!! | GTTTATTTTTTCCAATCTAT+AGG | + | chr2.4:20149946-20149965 | MS.gene059748:intron | 20.0% |
| !!! | TGAGTGATTTTTAGTTTTTT+CGG | + | chr2.4:20149533-20149552 | MS.gene059748:intron | 20.0% |
| !!! | TTCCTTCTATATTTTATGAA+AGG | + | chr2.4:20150084-20150103 | MS.gene059748:intron | 20.0% |
| !!! | TTTTGAATAATTTGCTGATT+TGG | + | chr2.4:20149388-20149407 | MS.gene059748:intron | 20.0% |
| !!! | TTTTGATGAATGAATATATG+TGG | + | chr2.4:20149588-20149607 | MS.gene059748:intron | 20.0% |
| ! | AACATTCAGAACAAACAAAA+TGG | - | chr2.4:20150191-20150210 | None:intergenic | 25.0% |
| ! | AATCAGTAGTTAATATCTAG+GGG | + | chr2.4:20151126-20151145 | MS.gene059748:intron | 25.0% |
| ! | AATGCTGCAATATGATTAAA+AGG | + | chr2.4:20150587-20150606 | MS.gene059748:intron | 25.0% |
| ! | ACTTAATAAAACATCTCCTT+AGG | - | chr2.4:20149661-20149680 | None:intergenic | 25.0% |
| ! | AGAAATGTGTAAAACTATGT+GGG | + | chr2.4:20148849-20148868 | MS.gene059748:intron | 25.0% |
| ! | ATGCTGCAATATGATTAAAA+GGG | + | chr2.4:20150588-20150607 | MS.gene059748:intron | 25.0% |
| ! | ATTGACATCAGAAATTATCT+AGG | + | chr2.4:20150742-20150761 | MS.gene059748:intron | 25.0% |
| ! | CTTAATAAAACATCTCCTTA+GGG | - | chr2.4:20149660-20149679 | None:intergenic | 25.0% |
| ! | GTAATCAGTAGTTAATATCT+AGG | + | chr2.4:20151124-20151143 | MS.gene059748:intron | 25.0% |
| ! | TACCAAGGTAAAAGATAAAA+CGG | - | chr2.4:20150930-20150949 | None:intergenic | 25.0% |
| ! | TGTAATACATTCTCTGTTAT+TGG | + | chr2.4:20149689-20149708 | MS.gene059748:intron | 25.0% |
| ! | TGTGAAATATAGTTCGAAAA+AGG | - | chr2.4:20150979-20150998 | None:intergenic | 25.0% |
| ! | TTGTGAGTAATAAATAATGG+AGG | + | chr2.4:20151639-20151658 | MS.gene059748:intron | 25.0% |
| ! | TTTAATCATATTGCAGCATT+AGG | - | chr2.4:20150587-20150606 | None:intergenic | 25.0% |
| ! | TTTGAGTATTTGAATTGATG+AGG | + | chr2.4:20149359-20149378 | MS.gene059748:intron | 25.0% |
| !! | ATTCTAACAATTTGAAGCTT+TGG | + | chr2.4:20151505-20151524 | MS.gene059748:intron | 25.0% |
| !! | CTTCAAAATCGTTTCTTTTA+TGG | + | chr2.4:20148814-20148833 | MS.gene059748:intron | 25.0% |
| !! | GGATAGAGTTTAAAACAAAA+GGG | - | chr2.4:20150909-20150928 | None:intergenic | 25.0% |
| !! | GTTTAGATTCAAGAAAGTTT+TGG | + | chr2.4:20148876-20148895 | MS.gene059748:intron | 25.0% |
| !! | TGGCTTTTACAAGAAAATAA+AGG | - | chr2.4:20151603-20151622 | None:intergenic | 25.0% |
| !! | TTGGTGATCTGATAAAATAA+GGG | + | chr2.4:20151529-20151548 | MS.gene059748:intron | 25.0% |
| !! | TTTGGTGATCTGATAAAATA+AGG | + | chr2.4:20151528-20151547 | MS.gene059748:intron | 25.0% |
| !!! | AAATGTGGTTTTGATATCTA+TGG | + | chr2.4:20150652-20150671 | MS.gene059748:intron | 25.0% |
| !!! | ATATGCTATATTGGCTTTTT+AGG | + | chr2.4:20150052-20150071 | MS.gene059748:intron | 25.0% |
| !!! | ATGCTTTAGCTTTTTGTTTT+TGG | + | chr2.4:20149314-20149333 | MS.gene059748:intron | 25.0% |
| AAATATAAGCCAATCCAAAC+AGG | - | chr2.4:20151152-20151171 | None:intergenic | 30.0% | |
| AAGATAATAGGAACAATGTG+AGG | + | chr2.4:20149037-20149056 | MS.gene059748:CDS | 30.0% | |
| ACAAAATGAACACTGCTTAA+TGG | - | chr2.4:20151623-20151642 | None:intergenic | 30.0% | |
| AGATAATAGGAACAATGTGA+GGG | + | chr2.4:20149038-20149057 | MS.gene059748:CDS | 30.0% | |
| ATTGTGTGTTTCTTCATTCT+TGG | + | chr2.4:20150476-20150495 | MS.gene059748:intron | 30.0% | |
| CAAAAACAAAAGGGTTTCAA+GGG | - | chr2.4:20148771-20148790 | None:intergenic | 30.0% | |
| CACTACCAAAAGATCATTTA+GGG | - | chr2.4:20151442-20151461 | None:intergenic | 30.0% | |
| GAAATATAGTTCGAAAAAGG+AGG | - | chr2.4:20150976-20150995 | None:intergenic | 30.0% | |
| GAGAAATGTGTAAAACTATG+TGG | + | chr2.4:20148848-20148867 | MS.gene059748:intron | 30.0% | |
| TATACTAAGCTTGAGAATGT+AGG | + | chr2.4:20149210-20149229 | MS.gene059748:CDS | 30.0% | |
| TATAGACCTGAAGAATCTAT+TGG | + | chr2.4:20149078-20149097 | MS.gene059748:CDS | 30.0% | |
| TATCGAAGAAGCAAAGAAAT+TGG | + | chr2.4:20150164-20150183 | MS.gene059748:CDS | 30.0% | |
| TCAAAAACAAAAGGGTTTCA+AGG | - | chr2.4:20148772-20148791 | None:intergenic | 30.0% | |
| TGAGAAGTCATATGCTATAT+TGG | + | chr2.4:20150043-20150062 | MS.gene059748:intron | 30.0% | |
| TGGTGATCTGATAAAATAAG+GGG | + | chr2.4:20151530-20151549 | MS.gene059748:intron | 30.0% | |
| TTATGTCAAACAACTCAAAC+AGG | - | chr2.4:20151094-20151113 | None:intergenic | 30.0% | |
| ! | AAAGACCCTAAATGATCTTT+TGG | + | chr2.4:20151434-20151453 | MS.gene059748:intron | 30.0% |
| ! | AACAATTTGAAGCTTTGGTT+TGG | + | chr2.4:20151510-20151529 | MS.gene059748:intron | 30.0% |
| ! | ATCCGTTTTATCTTTTACCT+TGG | + | chr2.4:20150925-20150944 | MS.gene059748:intron | 30.0% |
| ! | CGGATAGAGTTTAAAACAAA+AGG | - | chr2.4:20150910-20150929 | None:intergenic | 30.0% |
| ! | TATCTGATGGCATAAGTTTT+GGG | + | chr2.4:20151177-20151196 | MS.gene059748:intron | 30.0% |
| ! | TCAAGCATTGTTCATAATCA+AGG | - | chr2.4:20151790-20151809 | None:intergenic | 30.0% |
| ! | TCATTTTGTAGGTTTCTTGT+AGG | + | chr2.4:20150115-20150134 | MS.gene059748:intron | 30.0% |
| ! | TTATCTGATGGCATAAGTTT+TGG | + | chr2.4:20151176-20151195 | MS.gene059748:intron | 30.0% |
| ! | TTTATTGTTGTTGTTGTAGC+TGG | + | chr2.4:20148943-20148962 | MS.gene059748:intron | 30.0% |
| !! | ATTTTAGCATTTGGATGTGT+TGG | + | chr2.4:20149562-20149581 | MS.gene059748:intron | 30.0% |
| !! | CGGTATCTAATTTTAGCATT+TGG | + | chr2.4:20149553-20149572 | MS.gene059748:intron | 30.0% |
| ACTTTAACTGAACAAGCAGA+AGG | - | chr2.4:20149740-20149759 | None:intergenic | 35.0% | |
| AGAAGATCGAGCAAGATAAT+AGG | + | chr2.4:20149025-20149044 | MS.gene059748:CDS | 35.0% | |
| ATAAAACTCACACAGCAACA+CGG | - | chr2.4:20149296-20149315 | None:intergenic | 35.0% | |
| ATAAGTCGAAATGAAACTGC+TGG | + | chr2.4:20149869-20149888 | MS.gene059748:intron | 35.0% | |
| ATCAAGCACAAGAATTACCA+AGG | - | chr2.4:20150945-20150964 | None:intergenic | 35.0% | |
| CCACTACCAAAAGATCATTT+AGG | - | chr2.4:20151443-20151462 | None:intergenic | 35.0% | |
| CGAGATAAATGCTGGAAATA+GGG | + | chr2.4:20149769-20149788 | MS.gene059748:intron | 35.0% | |
| CTCAAACAGGTTATCAATAG+CGG | - | chr2.4:20151081-20151100 | None:intergenic | 35.0% | |
| GACTTATGAAAAACGATCCA+AGG | - | chr2.4:20149856-20149875 | None:intergenic | 35.0% | |
| GAGCACTTTGAACATCAAAA+TGG | - | chr2.4:20149149-20149168 | None:intergenic | 35.0% | |
| GGAACAAACAAGGTTGTTAA+AGG | + | chr2.4:20148730-20148749 | MS.gene059748:intron | 35.0% | |
| TAAGTCGAAATGAAACTGCT+GGG | + | chr2.4:20149870-20149889 | MS.gene059748:intron | 35.0% | |
| TCAAACAGGTTATCAATAGC+GGG | - | chr2.4:20151080-20151099 | None:intergenic | 35.0% | |
| TCGAGATAAATGCTGGAAAT+AGG | + | chr2.4:20149768-20149787 | MS.gene059748:intron | 35.0% | |
| TTGAAGATGTTTCCTCAACT+GGG | - | chr2.4:20148800-20148819 | None:intergenic | 35.0% | |
| TTTCTTCATTCTTGGTACCA+TGG | + | chr2.4:20150484-20150503 | MS.gene059748:intron | 35.0% | |
| TTTGAAGATGTTTCCTCAAC+TGG | - | chr2.4:20148801-20148820 | None:intergenic | 35.0% | |
| TTTGAGTATAAAGCTGCTAC+TGG | + | chr2.4:20149255-20149274 | MS.gene059748:CDS | 35.0% | |
| ! | AAAGTGCTCACACTATTGAA+GGG | + | chr2.4:20149160-20149179 | MS.gene059748:CDS | 35.0% |
| ! | AGGTACACACTTCATTTTGT+AGG | + | chr2.4:20150104-20150123 | MS.gene059748:intron | 35.0% |
| ! | CCTAAATGATCTTTTGGTAG+TGG | + | chr2.4:20151440-20151459 | MS.gene059748:intron | 35.0% |
| ! | GAACAATGCTTGAATTTTGC+AGG | + | chr2.4:20151797-20151816 | MS.gene059748:intron | 35.0% |
| ! | TTTATCGTTCTTCTAAGAGC+TGG | - | chr2.4:20149619-20149638 | None:intergenic | 35.0% |
| !! | AGAGTTGATGACCTATAGAT+TGG | - | chr2.4:20149960-20149979 | None:intergenic | 35.0% |
| !! | GTTCTGAGGATTACTATTGT+AGG | + | chr2.4:20149232-20149251 | MS.gene059748:CDS | 35.0% |
| !! | TATGAGGCATTCTTTTGCTT+TGG | + | chr2.4:20150318-20150337 | MS.gene059748:intron | 35.0% |
| !!! | ATAAGTTTTGGGAGTCTGTT+TGG | + | chr2.4:20151188-20151207 | MS.gene059748:intron | 35.0% |
| !!! | TAAGTTTTGGGAGTCTGTTT+GGG | + | chr2.4:20151189-20151208 | MS.gene059748:intron | 35.0% |
| AAAGCGATCGAGATAAATGC+TGG | + | chr2.4:20149761-20149780 | MS.gene059748:intron | 40.0% | |
| AAGACAGTTTCATGGAGCTA+AGG | + | chr2.4:20149107-20149126 | MS.gene059748:CDS | 40.0% | |
| AAGACCAGGAAAAAAGGACA+TGG | + | chr2.4:20148690-20148709 | MS.gene059748:CDS | 40.0% | |
| AAGTCGAAATGAAACTGCTG+GGG | + | chr2.4:20149871-20149890 | MS.gene059748:intron | 40.0% | |
| AATGCTCTACTACTGAGCTA+TGG | + | chr2.4:20150882-20150901 | MS.gene059748:intron | 40.0% | |
| AGACCTGAAGAATCTATTGG+TGG | + | chr2.4:20149081-20149100 | MS.gene059748:CDS | 40.0% | |
| ATAACATATAAGGGCCCAAC+CGG | + | chr2.4:20150827-20150846 | MS.gene059748:intron | 40.0% | |
| ATGGACTCTTACACAATCAG+AGG | + | chr2.4:20148709-20148728 | MS.gene059748:CDS | 40.0% | |
| ATTAGGTCATCCGGGTTATA+AGG | - | chr2.4:20149450-20149469 | None:intergenic | 40.0% | |
| CACAATCAGAGGAACAAACA+AGG | + | chr2.4:20148720-20148739 | MS.gene059748:CDS | 40.0% | |
| CGATGATTTGAAGAAACCAC+AGG | + | chr2.4:20150218-20150237 | MS.gene059748:CDS | 40.0% | |
| CTTCCACCAATAGATTCTTC+AGG | - | chr2.4:20149087-20149106 | None:intergenic | 40.0% | |
| GAAGACAAGACCAGGAAAAA+AGG | + | chr2.4:20148684-20148703 | MS.gene059748:CDS | 40.0% | |
| GCATTTGACTGCAGATCAAA+AGG | - | chr2.4:20150867-20150886 | None:intergenic | 40.0% | |
| TGAACAAAGACTTAGCCCTA+AGG | + | chr2.4:20149642-20149661 | MS.gene059748:intron | 40.0% | |
| TGATTTGAAGAAACCACAGG+CGG | + | chr2.4:20150221-20150240 | MS.gene059748:CDS | 40.0% | |
| TTAATATCTAGGGGCCTGTT+TGG | + | chr2.4:20151135-20151154 | MS.gene059748:intron | 40.0% | |
| TTATAACCCGGATGACCTAA+TGG | + | chr2.4:20149449-20149468 | MS.gene059748:CDS | 40.0% | |
| TTTGCTTTGGCCCTTTGATA+CGG | + | chr2.4:20150331-20150350 | MS.gene059748:intron | 40.0% | |
| ! | CAAAGTGCTCACACTATTGA+AGG | + | chr2.4:20149159-20149178 | MS.gene059748:CDS | 40.0% |
| ! | CAATGCTTGAATTTTGCAGG+TGG | + | chr2.4:20151800-20151819 | MS.gene059748:intron | 40.0% |
| ! | GCTCAAAGTCGAGATCTTTT+AGG | - | chr2.4:20149920-20149939 | None:intergenic | 40.0% |
| ! | GGGTCGGTTCAAAAACAAAA+GGG | - | chr2.4:20148780-20148799 | None:intergenic | 40.0% |
| ! | TGGGTCGGTTCAAAAACAAA+AGG | - | chr2.4:20148781-20148800 | None:intergenic | 40.0% |
| !! | AAAACGGATTACGCTAACCA+TGG | - | chr2.4:20150504-20150523 | None:intergenic | 40.0% |
| ACCTAATGGTGCAGTGTGAA+GGG | + | chr2.4:20149463-20149482 | MS.gene059748:CDS | 45.0% | |
| ACTGCAGATCAAAAGGTCAC+CGG | - | chr2.4:20150860-20150879 | None:intergenic | 45.0% | |
| AGATGTTTCCTCAACTGGGT+CGG | - | chr2.4:20148796-20148815 | None:intergenic | 45.0% | |
| ATCACCAGGATCTGATAGCA+AGG | + | chr2.4:20150254-20150273 | MS.gene059748:CDS | 45.0% | |
| ATGCGAGATGCCTTATAACC+CGG | + | chr2.4:20149437-20149456 | MS.gene059748:intron | 45.0% | |
| CTATCAGATCCTGGTGATAC+AGG | - | chr2.4:20150252-20150271 | None:intergenic | 45.0% | |
| CTGTGATAGCCCGTATCAAA+GGG | - | chr2.4:20150344-20150363 | None:intergenic | 45.0% | |
| CTGTTATTGGAACTCTGTCC+TGG | + | chr2.4:20149702-20149721 | MS.gene059748:intron | 45.0% | |
| GCTTGAGAATGTAGGTTCTG+AGG | + | chr2.4:20149218-20149237 | MS.gene059748:CDS | 45.0% | |
| GGTGGAAGAAGACAGTTTCA+TGG | + | chr2.4:20149099-20149118 | MS.gene059748:CDS | 45.0% | |
| TAACATATAAGGGCCCAACC+GGG | + | chr2.4:20150828-20150847 | MS.gene059748:intron | 45.0% | |
| TCTGTGATAGCCCGTATCAA+AGG | - | chr2.4:20150345-20150364 | None:intergenic | 45.0% | |
| TTGCTTTGGCCCTTTGATAC+GGG | + | chr2.4:20150332-20150351 | MS.gene059748:intron | 45.0% | |
| ! | TTTTTGAACCGACCCAGTTG+AGG | + | chr2.4:20148785-20148804 | MS.gene059748:intron | 45.0% |
| !!! | GAGTCCATGTCCTTTTTTCC+TGG | - | chr2.4:20148697-20148716 | None:intergenic | 45.0% |
| AACTCACACAGCAACACGGT+CGG | - | chr2.4:20149292-20149311 | None:intergenic | 50.0% | |
| ACCCTTCACACTGCACCATT+AGG | - | chr2.4:20149467-20149486 | None:intergenic | 50.0% | |
| ACTGCACCATTAGGTCATCC+GGG | - | chr2.4:20149458-20149477 | None:intergenic | 50.0% | |
| AGGTACCATCCTGCTTGTGT+GGG | + | chr2.4:20150135-20150154 | MS.gene059748:intron | 50.0% | |
| ATAGTCATGCCCACACAAGC+AGG | - | chr2.4:20150147-20150166 | None:intergenic | 50.0% | |
| ATCTAGGGGCCTGTTTGGAT+TGG | + | chr2.4:20151140-20151159 | MS.gene059748:intron | 50.0% | |
| ATGTGAGGGTTCGTGTGAGA+TGG | + | chr2.4:20149052-20149071 | MS.gene059748:CDS | 50.0% | |
| CACTGCACCATTAGGTCATC+CGG | - | chr2.4:20149459-20149478 | None:intergenic | 50.0% | |
| GACCTAATGGTGCAGTGTGA+AGG | + | chr2.4:20149462-20149481 | MS.gene059748:CDS | 50.0% | |
| TAGGTACCATCCTGCTTGTG+TGG | + | chr2.4:20150134-20150153 | MS.gene059748:intron | 50.0% | |
| TTCTCCACACGTGCCACATA+GGG | - | chr2.4:20149009-20149028 | None:intergenic | 50.0% | |
| ! | AGTGTGAAGGGTGCAAGGAT+TGG | + | chr2.4:20149475-20149494 | MS.gene059748:CDS | 50.0% |
| ! | CAAGCAGAAGGCTTTGTCCT+AGG | - | chr2.4:20149728-20149747 | None:intergenic | 50.0% |
| ! | CTCACCTTGCTATCAGATCC+TGG | - | chr2.4:20150261-20150280 | None:intergenic | 50.0% |
| !! | AAAGGTCACCGGTTCAAACC+CGG | - | chr2.4:20150849-20150868 | None:intergenic | 50.0% |
| ACTCACACAGCAACACGGTC+GGG | - | chr2.4:20149291-20149310 | None:intergenic | 55.0% | |
| CACGAGTAAGCCACCCTATG+TGG | + | chr2.4:20148993-20149012 | MS.gene059748:intron | 55.0% | |
| CTTCTCCACACGTGCCACAT+AGG | - | chr2.4:20149010-20149029 | None:intergenic | 55.0% | |
| GGTGGCTTACTCGTGTCAGA+AGG | - | chr2.4:20148988-20149007 | None:intergenic | 55.0% | |
| TCATGCCCACACAAGCAGGA+TGG | - | chr2.4:20150143-20150162 | None:intergenic | 55.0% | |
| TTGGAACTCTGTCCTGGCCT+AGG | + | chr2.4:20149708-20149727 | MS.gene059748:intron | 55.0% | |
| ! | AGAAGGCTTTGTCCTAGGCC+AGG | - | chr2.4:20149723-20149742 | None:intergenic | 55.0% |
| ! | TTTTGCAGGTGGAGCCGAAG+CGG | + | chr2.4:20151811-20151830 | MS.gene059748:intron | 55.0% |
| !! | TCACCGGTTCAAACCCGGTT+GGG | - | chr2.4:20150844-20150863 | None:intergenic | 55.0% |
| GATACAGGAAACGCCGCCTG+TGG | - | chr2.4:20150237-20150256 | None:intergenic | 60.0% | |
| GCGGCGTTTCCTGTATCACC+AGG | + | chr2.4:20150240-20150259 | MS.gene059748:CDS | 60.0% | |
| GGTCCTCTCTTTCGCCGCTT+CGG | - | chr2.4:20151828-20151847 | None:intergenic | 60.0% | |
| TCCACACGTGCCACATAGGG+TGG | - | chr2.4:20149006-20149025 | None:intergenic | 60.0% | |
| ! | GGTGCAGTGTGAAGGGTGCA+AGG | + | chr2.4:20149470-20149489 | MS.gene059748:CDS | 60.0% |
| !! | GTCACCGGTTCAAACCCGGT+TGG | - | chr2.4:20150845-20150864 | None:intergenic | 60.0% |
| GAGCCGAAGCGGCGAAAGAG+AGG | + | chr2.4:20151822-20151841 | MS.gene059748:CDS | 65.0% | |
| GCCACCCTATGTGGCACGTG+TGG | + | chr2.4:20149002-20149021 | MS.gene059748:intron | 65.0% | |
| GGGCCCAACCGGGTTTGAAC+CGG | + | chr2.4:20150838-20150857 | MS.gene059748:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 20148679 | 20151851 | 20148679 | ID=MS.gene059748 |
| chr2.4 | mRNA | 20148679 | 20151851 | 20148679 | ID=MS.gene059748.t1;Parent=MS.gene059748 |
| chr2.4 | exon | 20148679 | 20148741 | 20148679 | ID=MS.gene059748.t1.exon1;Parent=MS.gene059748.t1 |
| chr2.4 | CDS | 20148679 | 20148741 | 20148679 | ID=cds.MS.gene059748.t1;Parent=MS.gene059748.t1 |
| chr2.4 | exon | 20149003 | 20149302 | 20149003 | ID=MS.gene059748.t1.exon2;Parent=MS.gene059748.t1 |
| chr2.4 | CDS | 20149003 | 20149302 | 20149003 | ID=cds.MS.gene059748.t1;Parent=MS.gene059748.t1 |
| chr2.4 | exon | 20149444 | 20149496 | 20149444 | ID=MS.gene059748.t1.exon3;Parent=MS.gene059748.t1 |
| chr2.4 | CDS | 20149444 | 20149496 | 20149444 | ID=cds.MS.gene059748.t1;Parent=MS.gene059748.t1 |
| chr2.4 | exon | 20150137 | 20150275 | 20150137 | ID=MS.gene059748.t1.exon4;Parent=MS.gene059748.t1 |
| chr2.4 | CDS | 20150137 | 20150275 | 20150137 | ID=cds.MS.gene059748.t1;Parent=MS.gene059748.t1 |
| chr2.4 | exon | 20151819 | 20151851 | 20151819 | ID=MS.gene059748.t1.exon5;Parent=MS.gene059748.t1 |
| chr2.4 | CDS | 20151819 | 20151851 | 20151819 | ID=cds.MS.gene059748.t1;Parent=MS.gene059748.t1 |
| Gene Sequence |
| Protein sequence |
