Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68192.t1 | KEH36372.1 | 99.5 | 210 | 1 | 0 | 1 | 210 | 1 | 210 | 4.10E-121 | 444.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68192.t1 | Q9FEN9 | 70.5 | 210 | 59 | 2 | 1 | 210 | 1 | 207 | 3.3e-87 | 323.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68192.t1 | G7J7R0 | 99.5 | 210 | 1 | 0 | 1 | 210 | 1 | 210 | 2.9e-121 | 444.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene68192.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68192 | MS.gene062590 | PPI |
| MS.gene68192 | MS.gene58386 | PPI |
| MS.gene059748 | MS.gene68192 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68192.t1 | MTR_3g117270 | 99.524 | 210 | 1 | 0 | 1 | 210 | 1 | 210 | 1.24e-157 | 442 |
| MS.gene68192.t1 | MTR_3g117270 | 68.205 | 195 | 58 | 1 | 211 | 401 | 17 | 211 | 1.62e-95 | 285 |
| MS.gene68192.t1 | MTR_3g117270 | 99.524 | 210 | 1 | 0 | 1 | 210 | 1 | 210 | 1.24e-157 | 443 |
| MS.gene68192.t1 | MTR_3g117270 | 69.307 | 202 | 58 | 1 | 211 | 408 | 17 | 218 | 1.09e-100 | 298 |
| MS.gene68192.t1 | MTR_3g117280 | 90.816 | 196 | 18 | 0 | 213 | 408 | 1 | 196 | 9.62e-133 | 379 |
| MS.gene68192.t1 | MTR_3g117280 | 70.681 | 191 | 52 | 1 | 19 | 209 | 1 | 187 | 6.15e-96 | 285 |
| MS.gene68192.t1 | MTR_3g117270 | 99.394 | 165 | 1 | 0 | 1 | 165 | 1 | 165 | 4.11e-121 | 348 |
| MS.gene68192.t1 | MTR_3g117270 | 65.772 | 149 | 47 | 1 | 211 | 355 | 17 | 165 | 2.62e-67 | 211 |
| MS.gene68192.t1 | MTR_3g117270 | 99.390 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 7.48e-120 | 345 |
| MS.gene68192.t1 | MTR_3g117270 | 65.541 | 148 | 47 | 1 | 211 | 354 | 17 | 164 | 4.57e-66 | 208 |
| MS.gene68192.t1 | MTR_2g078310 | 73.158 | 190 | 48 | 2 | 1 | 190 | 1 | 187 | 1.26e-97 | 291 |
| MS.gene68192.t1 | MTR_2g078310 | 54.922 | 193 | 83 | 2 | 220 | 408 | 24 | 216 | 3.83e-72 | 225 |
| MS.gene68192.t1 | MTR_2g090365 | 50.521 | 192 | 87 | 5 | 1 | 190 | 263 | 448 | 3.20e-57 | 194 |
| MS.gene68192.t1 | MTR_2g090365 | 49.714 | 175 | 82 | 3 | 215 | 384 | 279 | 452 | 6.72e-52 | 180 |
| MS.gene68192.t1 | MTR_5g097190 | 45.968 | 124 | 58 | 4 | 74 | 188 | 15 | 138 | 9.81e-27 | 110 |
| MS.gene68192.t1 | MTR_5g097190 | 43.750 | 128 | 63 | 3 | 260 | 378 | 11 | 138 | 7.93e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68192.t1 | AT4G39100 | 70.476 | 210 | 59 | 2 | 1 | 210 | 1 | 207 | 8.88e-110 | 322 |
| MS.gene68192.t1 | AT4G39100 | 58.639 | 191 | 74 | 2 | 219 | 405 | 23 | 212 | 6.73e-80 | 246 |
| MS.gene68192.t1 | AT4G22140 | 67.143 | 210 | 65 | 3 | 2 | 210 | 10 | 216 | 9.20e-103 | 304 |
| MS.gene68192.t1 | AT4G22140 | 56.477 | 193 | 80 | 2 | 220 | 408 | 32 | 224 | 5.32e-78 | 241 |
| MS.gene68192.t1 | AT4G22140 | 67.143 | 210 | 65 | 3 | 2 | 210 | 10 | 216 | 1.76e-102 | 303 |
| MS.gene68192.t1 | AT4G22140 | 55.914 | 186 | 78 | 2 | 220 | 401 | 32 | 217 | 1.23e-73 | 230 |
| MS.gene68192.t1 | AT4G22140 | 67.143 | 210 | 65 | 3 | 2 | 210 | 10 | 216 | 1.76e-102 | 303 |
| MS.gene68192.t1 | AT4G22140 | 55.914 | 186 | 78 | 2 | 220 | 401 | 32 | 217 | 1.23e-73 | 230 |
| MS.gene68192.t1 | AT4G39100 | 76.364 | 165 | 37 | 1 | 1 | 165 | 1 | 163 | 7.91e-93 | 276 |
| MS.gene68192.t1 | AT4G39100 | 62.411 | 141 | 49 | 1 | 219 | 355 | 23 | 163 | 3.87e-62 | 198 |
| MS.gene68192.t1 | AT4G04260 | 62.162 | 185 | 66 | 3 | 28 | 210 | 9 | 191 | 1.21e-75 | 234 |
| MS.gene68192.t1 | AT4G04260 | 48.913 | 184 | 88 | 3 | 222 | 400 | 9 | 191 | 3.22e-56 | 184 |
| MS.gene68192.t1 | AT4G04260 | 61.111 | 180 | 66 | 3 | 33 | 210 | 1 | 178 | 1.77e-71 | 223 |
| MS.gene68192.t1 | AT4G04260 | 48.045 | 179 | 87 | 3 | 227 | 400 | 1 | 178 | 4.05e-53 | 176 |
| MS.gene68192.t1 | AT4G04260 | 71.186 | 118 | 33 | 1 | 25 | 142 | 24 | 140 | 5.87e-55 | 178 |
| MS.gene68192.t1 | AT4G04260 | 56.034 | 116 | 48 | 1 | 220 | 332 | 25 | 140 | 7.37e-39 | 136 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57668 | gene | 88278 | 97825 | 88278 | ID=MS.gene68192 |
| 57668 | mRNA | 88278 | 97825 | 88278 | ID=MS.gene68192.t1;Parent=MS.gene68192 |
| 57668 | exon | 97747 | 97825 | 97747 | ID=MS.gene68192.t1.exon1;Parent=MS.gene68192.t1 |
| 57668 | CDS | 97747 | 97825 | 97747 | ID=cds.MS.gene68192.t1;Parent=MS.gene68192.t1 |
| 57668 | exon | 97321 | 97666 | 97321 | ID=MS.gene68192.t1.exon2;Parent=MS.gene68192.t1 |
| 57668 | CDS | 97321 | 97666 | 97321 | ID=cds.MS.gene68192.t1;Parent=MS.gene68192.t1 |
| 57668 | exon | 96513 | 96581 | 96513 | ID=MS.gene68192.t1.exon3;Parent=MS.gene68192.t1 |
| 57668 | CDS | 96513 | 96581 | 96513 | ID=cds.MS.gene68192.t1;Parent=MS.gene68192.t1 |
| 57668 | exon | 94895 | 95030 | 94895 | ID=MS.gene68192.t1.exon4;Parent=MS.gene68192.t1 |
| 57668 | CDS | 94895 | 95030 | 94895 | ID=cds.MS.gene68192.t1;Parent=MS.gene68192.t1 |
| 57668 | exon | 91195 | 91225 | 91195 | ID=MS.gene68192.t1.exon5;Parent=MS.gene68192.t1 |
| 57668 | CDS | 91195 | 91225 | 91195 | ID=cds.MS.gene68192.t1;Parent=MS.gene68192.t1 |
| 57668 | exon | 90735 | 91068 | 90735 | ID=MS.gene68192.t1.exon6;Parent=MS.gene68192.t1 |
| 57668 | CDS | 90735 | 91068 | 90735 | ID=cds.MS.gene68192.t1;Parent=MS.gene68192.t1 |
| 57668 | exon | 90507 | 90575 | 90507 | ID=MS.gene68192.t1.exon7;Parent=MS.gene68192.t1 |
| 57668 | CDS | 90507 | 90575 | 90507 | ID=cds.MS.gene68192.t1;Parent=MS.gene68192.t1 |
| 57668 | exon | 89126 | 89261 | 89126 | ID=MS.gene68192.t1.exon8;Parent=MS.gene68192.t1 |
| 57668 | CDS | 89126 | 89261 | 89126 | ID=cds.MS.gene68192.t1;Parent=MS.gene68192.t1 |
| 57668 | exon | 88278 | 88304 | 88278 | ID=MS.gene68192.t1.exon9;Parent=MS.gene68192.t1 |
| 57668 | CDS | 88278 | 88304 | 88278 | ID=cds.MS.gene68192.t1;Parent=MS.gene68192.t1 |
| Gene Sequence |
| Protein sequence |
