Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059921.t1 | XP_024631199.1 | 86.9 | 84 | 10 | 1 | 7 | 90 | 118 | 200 | 2.80E-30 | 141.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059921.t1 | Q9FQ03 | 75.0 | 84 | 20 | 1 | 7 | 90 | 118 | 200 | 3.9e-28 | 125.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059921.t1 | A0A396JH84 | 86.9 | 84 | 10 | 1 | 7 | 90 | 118 | 200 | 2.0e-30 | 141.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05925 | MS.gene059921 | 0.807526 | 4.84E-50 | -1.69E-46 |
| MS.gene059921 | MS.gene53827 | 0.805836 | 1.10E-49 | -1.69E-46 |
| MS.gene059921 | MS.gene77421 | 0.808737 | 2.67E-50 | -1.69E-46 |
| MS.gene059921 | MS.gene80427 | 0.816418 | 5.59E-52 | -1.69E-46 |
| MS.gene059921 | MS.gene97534 | 0.801205 | 1.00E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059921.t1 | MTR_7g114570 | 55.172 | 87 | 38 | 1 | 4 | 90 | 117 | 202 | 7.84e-16 | 73.9 |
| MS.gene059921.t1 | MTR_7g114570 | 55.172 | 87 | 38 | 1 | 4 | 90 | 117 | 202 | 8.14e-16 | 73.9 |
| MS.gene059921.t1 | MTR_4g051920 | 41.379 | 87 | 50 | 1 | 4 | 90 | 104 | 189 | 5.53e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059921.t1 | AT1G75660 | 69.643 | 56 | 16 | 1 | 35 | 90 | 146 | 200 | 2.43e-19 | 84.3 |
| MS.gene059921.t1 | AT5G42540 | 62.712 | 59 | 21 | 1 | 32 | 90 | 145 | 202 | 5.79e-19 | 83.2 |
| MS.gene059921.t1 | AT5G42540 | 62.712 | 59 | 21 | 1 | 32 | 90 | 145 | 202 | 5.96e-19 | 83.2 |
| MS.gene059921.t1 | AT1G54490 | 55.172 | 87 | 38 | 1 | 4 | 90 | 58 | 143 | 9.74e-18 | 79.7 |
| MS.gene059921.t1 | AT1G54490 | 55.172 | 87 | 38 | 1 | 4 | 90 | 116 | 201 | 1.31e-17 | 79.3 |
Find 34 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAGAAATGTTCTCGGTTT+AGG | 0.213769 | 8.1:-19438676 | MS.gene059921:intron |
| ATAGAAATGTTCTCGGTTTA+GGG | 0.272250 | 8.1:-19438675 | MS.gene059921:intron |
| AAAGTTGCCGATTCCTCTTT+AGG | 0.277058 | 8.1:+19437962 | None:intergenic |
| AAGTGTTGGTGACTCCTTAC+AGG | 0.348622 | 8.1:+19434365 | None:intergenic |
| TACAGTACTATGTGCATCTT+AGG | 0.385595 | 8.1:-19437880 | MS.gene059921:CDS |
| CACACCTGGAACTGAATTCA+TGG | 0.389646 | 8.1:-19437924 | MS.gene059921:CDS |
| CTTAGGTTGAACAATGATCT+TGG | 0.390761 | 8.1:-19437863 | MS.gene059921:CDS |
| CATATGAACCACACATGGAT+TGG | 0.431260 | 8.1:-19438942 | None:intergenic |
| TCTTGGTTGGAATAACATAA+AGG | 0.434859 | 8.1:-19437846 | MS.gene059921:intron |
| GTCTATTGTATAGGCTTTGG+AGG | 0.440001 | 8.1:-19434807 | MS.gene059921:intron |
| TATGTGCAGGGTTACCTGTA+AGG | 0.442054 | 8.1:-19434379 | MS.gene059921:intron |
| GGTTGAACAATGATCTTGGT+TGG | 0.455179 | 8.1:-19437859 | MS.gene059921:CDS |
| ACTTCCTCCTAAAGAGGAAT+CGG | 0.472690 | 8.1:-19437969 | MS.gene059921:CDS |
| ACCTCTTTCTTCACAAGTGT+TGG | 0.473004 | 8.1:+19434351 | None:intergenic |
| ATATGAACCACACATGGATT+GGG | 0.479844 | 8.1:-19438941 | None:intergenic |
| CAAGAAGGTCTTCTGACTCC+TGG | 0.484397 | 8.1:-19434755 | MS.gene059921:CDS |
| ACAACCATGAATTCAGTTCC+AGG | 0.484608 | 8.1:+19437920 | None:intergenic |
| GATTCAAATGTCATCACACC+TGG | 0.521016 | 8.1:-19437938 | MS.gene059921:CDS |
| CAGAAAACTTCCTCCTAAAG+AGG | 0.527440 | 8.1:-19437975 | MS.gene059921:CDS |
| TATATGGATAGAAATGTTCT+CGG | 0.530767 | 8.1:-19438682 | MS.gene059921:intron |
| CGAGAGGAATTTGAGAGGGA+GGG | 0.549293 | 8.1:-19437998 | MS.gene059921:CDS |
| GATAGGCTATTGAAGAATCA+AGG | 0.551651 | 8.1:-19438024 | MS.gene059921:intron |
| ACCAACACTTGTGAAGAAAG+AGG | 0.553051 | 8.1:-19434352 | MS.gene059921:CDS |
| ACGAGAGGAATTTGAGAGGG+AGG | 0.592042 | 8.1:-19437999 | MS.gene059921:CDS |
| GTTACGAGAGGAATTTGAGA+GGG | 0.595252 | 8.1:-19438002 | MS.gene059921:CDS |
| ACTAACATCTGAGTTTCAGA+TGG | 0.612062 | 8.1:+19434782 | None:intergenic |
| AAAATAGGTTGTGAAACATG+AGG | 0.614725 | 8.1:-19434899 | MS.gene059921:intron |
| CAGATGTTAGTGATGCAAGA+AGG | 0.615763 | 8.1:-19434770 | MS.gene059921:CDS |
| GGTTACGAGAGGAATTTGAG+AGG | 0.625714 | 8.1:-19438003 | MS.gene059921:CDS |
| GTTGCCGATTCCTCTTTAGG+AGG | 0.629901 | 8.1:+19437965 | None:intergenic |
| TGCTAAAGATGCATCTGATG+CGG | 0.635804 | 8.1:-19438651 | MS.gene059921:intron |
| GATCATGTTACAGAAACGAA+CGG | 0.636768 | 8.1:+19434850 | None:intergenic |
| AAATAGGTTGTGAAACATGA+GGG | 0.638254 | 8.1:-19434898 | MS.gene059921:intron |
| TGAAGAATCAAGGTTACGAG+AGG | 0.653348 | 8.1:-19438014 | MS.gene059921:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAATATTTTTTTTT+CGG | + | chr8.1:19436922-19436903 | None:intergenic | 0.0% |
| !!! | AATTATTTTTATTTTTTTAT+AGG | - | chr8.1:19436090-19436109 | MS.gene059921:intron | 0.0% |
| !!! | AATTATTTTTATTTTTTTAT+AGG | + | chr8.1:19436109-19436090 | None:intergenic | 0.0% |
| !!! | ATTATTTTTATTTTTTTATA+GGG | - | chr8.1:19436091-19436110 | MS.gene059921:intron | 0.0% |
| !!! | ATTATTTTTATTTTTTTATA+GGG | + | chr8.1:19436110-19436091 | None:intergenic | 0.0% |
| !! | TAAAAATAAAAAGTAAAATC+TGG | - | chr8.1:19436279-19436298 | MS.gene059921:intron | 10.0% |
| !! | TAAAAATAAAAAGTAAAATC+TGG | + | chr8.1:19436298-19436279 | None:intergenic | 10.0% |
| !! | TTAAAAAAATGAAAACATTA+TGG | - | chr8.1:19436307-19436326 | MS.gene059921:intron | 10.0% |
| !! | TTTATAGTTTATATAGAAAT+TGG | - | chr8.1:19437431-19437450 | MS.gene059921:intron | 10.0% |
| !!! | ATATTTTTTTTTCATTTTTC+CGG | - | chr8.1:19436911-19436930 | MS.gene059921:intron | 10.0% |
| !!! | ATTAAAATCACTATTTTAAA+TGG | - | chr8.1:19438805-19438824 | MS.gene059921:intron | 10.0% |
| !!! | CGAAATTTTTTTAAAAAAAT+TGG | - | chr8.1:19436217-19436236 | MS.gene059921:intron | 10.0% |
| !!! | CGAAATTTTTTTAAAAAAAT+TGG | + | chr8.1:19436236-19436217 | None:intergenic | 10.0% |
| !! | AAAATATTTCATTATTCTTC+CGG | + | chr8.1:19435182-19435201 | None:intergenic | 15.0% |
| !! | AAATTATTAAAGCAACTTAA+TGG | + | chr8.1:19435804-19435823 | None:intergenic | 15.0% |
| !! | AAATTCAATATAAACTATCA+AGG | + | chr8.1:19437391-19437410 | None:intergenic | 15.0% |
| !! | AATGTATTTAAATTTCTACA+TGG | - | chr8.1:19438048-19438067 | MS.gene059921:intron | 15.0% |
| !! | AATTCAATATAAACTATCAA+GGG | + | chr8.1:19437390-19437409 | None:intergenic | 15.0% |
| !! | TAAAAATGAAAACAAAAATC+TGG | - | chr8.1:19436249-19436268 | MS.gene059921:intron | 15.0% |
| !! | TAAAAATGAAAACAAAAATC+TGG | + | chr8.1:19436268-19436249 | None:intergenic | 15.0% |
| !! | TAATTTAATGTCTATTGTAT+AGG | - | chr8.1:19438459-19438478 | MS.gene059921:intron | 15.0% |
| !! | TTAAATGGTGTTTAATTATT+AGG | - | chr8.1:19438820-19438839 | MS.gene059921:intron | 15.0% |
| !! | TTTATCCTTTATCTAATATT+TGG | - | chr8.1:19435846-19435865 | MS.gene059921:intron | 15.0% |
| !!! | GATTTTTTTTTTCATTTTTC+CGG | + | chr8.1:19436383-19436402 | None:intergenic | 15.0% |
| !!! | TATTTGTTATCTAAATTGTA+TGG | - | chr8.1:19435463-19435482 | MS.gene059921:intron | 15.0% |
| !!! | TTTTTCAAAAATTTCAAGAT+TGG | - | chr8.1:19436754-19436773 | MS.gene059921:intron | 15.0% |
| !! | AAATACATGGATAGAATATA+TGG | - | chr8.1:19434577-19434596 | MS.gene059921:CDS | 20.0% |
| !! | AGTTCATATACAAAAATACA+TGG | - | chr8.1:19434564-19434583 | MS.gene059921:intron | 20.0% |
| !! | ATACATTGTATCATGTTATT+CGG | + | chr8.1:19436826-19436845 | None:intergenic | 20.0% |
| !! | CAAAATATTCTCAAAAGATT+AGG | + | chr8.1:19434367-19434386 | None:intergenic | 20.0% |
| !! | CAATTATTAAAGCAACTTAA+TGG | + | chr8.1:19435879-19435898 | None:intergenic | 20.0% |
| !! | CATAATATAAAGAAAAACTG+GGG | + | chr8.1:19435776-19435795 | None:intergenic | 20.0% |
| !! | CTAAACAATTACCAAATTAA+AGG | + | chr8.1:19437681-19437700 | None:intergenic | 20.0% |
| !! | GCATAATATAAAGAAAAACT+GGG | + | chr8.1:19435777-19435796 | None:intergenic | 20.0% |
| !! | GGTATATAAATCATGTTATA+CGG | - | chr8.1:19436859-19436878 | MS.gene059921:intron | 20.0% |
| !! | GGTATATAAATCATGTTATA+CGG | + | chr8.1:19436878-19436859 | None:intergenic | 20.0% |
| !! | GTATAACATGATTTATATAC+CGG | - | chr8.1:19436438-19436457 | MS.gene059921:intron | 20.0% |
| !! | GTATAACATGATTTATATAC+CGG | + | chr8.1:19436457-19436438 | None:intergenic | 20.0% |
| !! | GTTTCTTCAAAAAAATTGTA+TGG | - | chr8.1:19435495-19435514 | MS.gene059921:intron | 20.0% |
| !! | TATAAGTTACTCCTTTAATT+TGG | - | chr8.1:19437667-19437686 | MS.gene059921:intron | 20.0% |
| !! | TATGAACATGAAAAACTATA+CGG | - | chr8.1:19434503-19434522 | MS.gene059921:intron | 20.0% |
| !! | TATTGAAATATAGAAAACTC+TGG | - | chr8.1:19434790-19434809 | MS.gene059921:CDS | 20.0% |
| !! | TGCATAATATAAAGAAAAAC+TGG | + | chr8.1:19435778-19435797 | None:intergenic | 20.0% |
| !!! | AAATGAAAACCCTATTTTAT+GGG | - | chr8.1:19435685-19435704 | MS.gene059921:intron | 20.0% |
| !!! | ATACATTGTATCTTGTTATT+CGG | - | chr8.1:19436472-19436491 | MS.gene059921:intron | 20.0% |
| !!! | ATTTTTGTATATGAACTGAA+GGG | + | chr8.1:19434561-19434580 | None:intergenic | 20.0% |
| !!! | CTTTAATTTGGTAATTGTTT+AGG | - | chr8.1:19437679-19437698 | MS.gene059921:intron | 20.0% |
| !!! | CTTTTGATTTTGTGATTAAT+TGG | - | chr8.1:19434671-19434690 | MS.gene059921:intron | 20.0% |
| !!! | TATTTTTGTATATGAACTGA+AGG | + | chr8.1:19434562-19434581 | None:intergenic | 20.0% |
| !!! | TGACAAATATCAACTTTTTT+AGG | + | chr8.1:19437820-19437839 | None:intergenic | 20.0% |
| !!! | TGCTTTAATAATTGATAGTT+GGG | - | chr8.1:19435885-19435904 | MS.gene059921:intron | 20.0% |
| !!! | TTACTTTTTGTGACAAAAAT+AGG | - | chr8.1:19438361-19438380 | MS.gene059921:intron | 20.0% |
| !!! | TTGCTTTAATAATTGATAGT+TGG | - | chr8.1:19435884-19435903 | MS.gene059921:intron | 20.0% |
| !!! | TTTCAGATTTTTTTCAATAC+CGG | - | chr8.1:19436361-19436380 | MS.gene059921:intron | 20.0% |
| ! | AATATAGAAAACTCTGGTAT+TGG | - | chr8.1:19434796-19434815 | MS.gene059921:CDS | 25.0% |
| ! | AGGAGTAACTTATAATAACT+CGG | + | chr8.1:19437661-19437680 | None:intergenic | 25.0% |
| ! | AGTTCATTTAAATGAAATGC+AGG | + | chr8.1:19438563-19438582 | None:intergenic | 25.0% |
| ! | ATATAGAAAACTCTGGTATT+GGG | - | chr8.1:19434797-19434816 | MS.gene059921:CDS | 25.0% |
| ! | ATTGAATCAAACAGAATCAA+AGG | + | chr8.1:19435652-19435671 | None:intergenic | 25.0% |
| ! | CACAACCAAATATTAGATAA+AGG | + | chr8.1:19435854-19435873 | None:intergenic | 25.0% |
| ! | CATTTCATTTAAATGAACTC+TGG | - | chr8.1:19438564-19438583 | MS.gene059921:intron | 25.0% |
| ! | GAAATTGGATCAAACATATA+TGG | - | chr8.1:19437446-19437465 | MS.gene059921:intron | 25.0% |
| ! | TAAAATTTCGCTACACTATA+GGG | + | chr8.1:19434886-19434905 | None:intergenic | 25.0% |
| ! | TATATGGATAGAAATGTTCT+CGG | - | chr8.1:19434593-19434612 | MS.gene059921:CDS | 25.0% |
| ! | TCACCTTATTGAATATAGAT+AGG | - | chr8.1:19437984-19438003 | MS.gene059921:CDS | 25.0% |
| ! | TTAAAATTTCGCTACACTAT+AGG | + | chr8.1:19434887-19434906 | None:intergenic | 25.0% |
| !! | ACGTAATTGCTGTTAAATAT+AGG | - | chr8.1:19434860-19434879 | MS.gene059921:intron | 25.0% |
| !! | ATGTTCAACTTTAATTTCAC+CGG | - | chr8.1:19435160-19435179 | MS.gene059921:intron | 25.0% |
| !! | CAAATGAAAACCCTATTTTA+TGG | - | chr8.1:19435684-19435703 | MS.gene059921:intron | 25.0% |
| !! | CAATGTATATTGATTGATAC+CGG | - | chr8.1:19436838-19436857 | MS.gene059921:intron | 25.0% |
| !! | TGATTTTTGTGTATATCTGA+AGG | - | chr8.1:19435555-19435574 | MS.gene059921:intron | 25.0% |
| !!! | AGTTGCTTTAATAATTTGCT+TGG | - | chr8.1:19435807-19435826 | MS.gene059921:intron | 25.0% |
| !!! | ATCGAAAGAATCTTTTTTAC+AGG | - | chr8.1:19437316-19437335 | MS.gene059921:intron | 25.0% |
| !!! | ATCGAAAGAATCTTTTTTAC+AGG | + | chr8.1:19437335-19437316 | None:intergenic | 25.0% |
| !!! | CTTTAATAATTTGCTTGGTT+TGG | - | chr8.1:19435812-19435831 | MS.gene059921:intron | 25.0% |
| !!! | TCGAAAGAATCTTTTTTACA+GGG | - | chr8.1:19437317-19437336 | MS.gene059921:intron | 25.0% |
| !!! | TCGAAAGAATCTTTTTTACA+GGG | + | chr8.1:19437336-19437317 | None:intergenic | 25.0% |
| !!! | TTCCAGATTTTTTTCAATAC+CGG | + | chr8.1:19436933-19436952 | None:intergenic | 25.0% |
| !!! | TTTTTTCACTCTGTAAAACT+CGG | - | chr8.1:19437873-19437892 | MS.gene059921:CDS | 25.0% |
| AAAAAAATTCAAGTGTGCGA+AGG | - | chr8.1:19438692-19438711 | MS.gene059921:intron | 30.0% | |
| AAAACAATGCACACATATGA+TGG | + | chr8.1:19437755-19437774 | None:intergenic | 30.0% | |
| AAAATAGGTTGTGAAACATG+AGG | - | chr8.1:19438376-19438395 | MS.gene059921:intron | 30.0% | |
| AAATAGGTTGTGAAACATGA+GGG | - | chr8.1:19438377-19438396 | MS.gene059921:intron | 30.0% | |
| AAATATAGGCACTATAGTGA+AGG | - | chr8.1:19435030-19435049 | MS.gene059921:intron | 30.0% | |
| AATATAGGCACTATAGTGAA+GGG | - | chr8.1:19435031-19435050 | MS.gene059921:intron | 30.0% | |
| AATGATTTCTGTGTGCATAT+GGG | - | chr8.1:19437574-19437593 | MS.gene059921:intron | 30.0% | |
| AATGTCTATTGTATAGGCTT+TGG | - | chr8.1:19438465-19438484 | MS.gene059921:intron | 30.0% | |
| ATAGAAATGTTCTCGGTTTA+GGG | - | chr8.1:19434600-19434619 | MS.gene059921:CDS | 30.0% | |
| CATTTAAATGAAATGCAGGA+AGG | + | chr8.1:19438559-19438578 | None:intergenic | 30.0% | |
| GTGCCTATCTATATTCAATA+AGG | + | chr8.1:19437990-19438009 | None:intergenic | 30.0% | |
| GTGTAAAAGGTTGTCATAAA+TGG | - | chr8.1:19438598-19438617 | MS.gene059921:intron | 30.0% | |
| GTTAAAAATTCGCTACACTA+TGG | + | chr8.1:19434992-19435011 | None:intergenic | 30.0% | |
| TAATGATTTCTGTGTGCATA+TGG | - | chr8.1:19437573-19437592 | MS.gene059921:intron | 30.0% | |
| TATGTAATAGTTAAGCCATG+AGG | + | chr8.1:19438247-19438266 | None:intergenic | 30.0% | |
| TCTTGGTTGGAATAACATAA+AGG | - | chr8.1:19435429-19435448 | MS.gene059921:intron | 30.0% | |
| TGCTATAGCTAGGAAAATAT+AGG | - | chr8.1:19434964-19434983 | MS.gene059921:intron | 30.0% | |
| TGCTATTGCTAGGAAAATAT+AGG | - | chr8.1:19434912-19434931 | MS.gene059921:intron | 30.0% | |
| TGCTATTGCTCAGAAAATAT+AGG | - | chr8.1:19435016-19435035 | MS.gene059921:intron | 30.0% | |
| TTGGAGAATTTAATCTTTCG+TGG | - | chr8.1:19434690-19434709 | MS.gene059921:intron | 30.0% | |
| TTTAACAAACTGCTATTGCT+AGG | - | chr8.1:19434902-19434921 | MS.gene059921:intron | 30.0% | |
| ! | ATTGGTCTATGTACAGTTAA+TGG | + | chr8.1:19434740-19434759 | None:intergenic | 30.0% |
| ! | ATTTTTACCCCCTGTAATAT+AGG | + | chr8.1:19437360-19437379 | None:intergenic | 30.0% |
| ! | CAATGTATATTGATTGACAC+CGG | + | chr8.1:19436460-19436479 | None:intergenic | 30.0% |
| ! | GATTTTTATGTGTGCCATAT+AGG | - | chr8.1:19438864-19438883 | MS.gene059921:intron | 30.0% |
| ! | GTTTAGGTTAAATCTGAAGT+CGG | - | chr8.1:19437695-19437714 | MS.gene059921:intron | 30.0% |
| ! | TTCCGGTATTGAAAAAAATC+TGG | - | chr8.1:19436928-19436947 | MS.gene059921:intron | 30.0% |
| ! | TTTTTCACTCTGTAAAACTC+GGG | - | chr8.1:19437874-19437893 | MS.gene059921:CDS | 30.0% |
| !! | CAGTTACTTTCATTTTGACA+GGG | - | chr8.1:19438093-19438112 | MS.gene059921:intron | 30.0% |
| !! | TCAGTTACTTTCATTTTGAC+AGG | - | chr8.1:19438092-19438111 | MS.gene059921:intron | 30.0% |
| !!! | AAAGAATCTTTTTTACAGGG+GGG | - | chr8.1:19437320-19437339 | MS.gene059921:intron | 30.0% |
| !!! | CATTGTTTTTTGACTGAGTA+TGG | - | chr8.1:19437766-19437785 | MS.gene059921:intron | 30.0% |
| !!! | CGAAAGAATCTTTTTTACAG+GGG | - | chr8.1:19437318-19437337 | MS.gene059921:intron | 30.0% |
| !!! | CGAAAGAATCTTTTTTACAG+GGG | + | chr8.1:19437337-19437318 | None:intergenic | 30.0% |
| !!! | GAAAGAATCTTTTTTACAGG+GGG | - | chr8.1:19437319-19437338 | MS.gene059921:intron | 30.0% |
| !!! | GGTATGTTTTTGAGTGTAAA+AGG | - | chr8.1:19438585-19438604 | MS.gene059921:intron | 30.0% |
| !!! | TATTTTTTTATAGGGACACG+TGG | - | chr8.1:19436099-19436118 | MS.gene059921:intron | 30.0% |
| !!! | TATTTTTTTATAGGGACACG+TGG | + | chr8.1:19436118-19436099 | None:intergenic | 30.0% |
| !!! | TTTGATTCACCTTTTTTGAC+TGG | - | chr8.1:19435215-19435234 | MS.gene059921:intron | 30.0% |
| AACCTACATAAAAATGCAGC+AGG | + | chr8.1:19434829-19434848 | None:intergenic | 35.0% | |
| AACTACTATTTGGCAACACT+TGG | + | chr8.1:19435101-19435120 | None:intergenic | 35.0% | |
| AAGAGAACACCAGTCAAAAA+AGG | + | chr8.1:19435227-19435246 | None:intergenic | 35.0% | |
| AAGCATATTTATGCACCTCA+TGG | - | chr8.1:19438229-19438248 | MS.gene059921:intron | 35.0% | |
| AAGTTCATAATCCCCTTAAC+CGG | + | chr8.1:19435605-19435624 | None:intergenic | 35.0% | |
| ACACACATACTCATCAGAAT+TGG | + | chr8.1:19437960-19437979 | None:intergenic | 35.0% | |
| ACATAAACGTCACTCCTATA+TGG | + | chr8.1:19438881-19438900 | None:intergenic | 35.0% | |
| ACTAACATCTGAGTTTCAGA+TGG | + | chr8.1:19438496-19438515 | None:intergenic | 35.0% | |
| ATCAAACCAATGTGCAACAT+TGG | + | chr8.1:19434758-19434777 | None:intergenic | 35.0% | |
| GAAGATTCGATTTCAGACAT+TGG | - | chr8.1:19435718-19435737 | MS.gene059921:intron | 35.0% | |
| GAATCTTCATATTACAGGGT+TGG | - | chr8.1:19437292-19437311 | MS.gene059921:intron | 35.0% | |
| GAATCTTCATATTACAGGGT+TGG | + | chr8.1:19437311-19437292 | None:intergenic | 35.0% | |
| GACGGAATCTTCATATTACA+GGG | - | chr8.1:19437288-19437307 | MS.gene059921:intron | 35.0% | |
| GACGGAATCTTCATATTACA+GGG | + | chr8.1:19437307-19437288 | None:intergenic | 35.0% | |
| GATAAAACAATCTGAGTGCT+GGG | + | chr8.1:19434416-19434435 | None:intergenic | 35.0% | |
| GATAGAAATGTTCTCGGTTT+AGG | - | chr8.1:19434599-19434618 | MS.gene059921:CDS | 35.0% | |
| GATAGGCTATTGAAGAATCA+AGG | - | chr8.1:19435251-19435270 | MS.gene059921:intron | 35.0% | |
| GATCATGTTACAGAAACGAA+CGG | + | chr8.1:19438428-19438447 | None:intergenic | 35.0% | |
| GCACTACTACAACTACTATT+TGG | + | chr8.1:19435111-19435130 | None:intergenic | 35.0% | |
| GGCAATTTCAGAAAATGACT+AGG | - | chr8.1:19437467-19437486 | MS.gene059921:intron | 35.0% | |
| TACAGTACTATGTGCATCTT+AGG | - | chr8.1:19435395-19435414 | MS.gene059921:intron | 35.0% | |
| TCCCTTGAACCCATAAAATA+GGG | + | chr8.1:19435697-19435716 | None:intergenic | 35.0% | |
| TGCTGATAATCTGTGTTTCA+AGG | - | chr8.1:19438133-19438152 | MS.gene059921:intron | 35.0% | |
| TGTATCATGTTATTCGGACA+TGG | + | chr8.1:19436820-19436839 | None:intergenic | 35.0% | |
| TTTAACGAACTGCTATAGCT+AGG | - | chr8.1:19434954-19434973 | MS.gene059921:intron | 35.0% | |
| ! | AACCCTATTTTATGGGTTCA+AGG | - | chr8.1:19435692-19435711 | MS.gene059921:intron | 35.0% |
| ! | ACCCTATTTTATGGGTTCAA+GGG | - | chr8.1:19435693-19435712 | MS.gene059921:intron | 35.0% |
| ! | AGTCTTTTCGGATTTTTACC+AGG | - | chr8.1:19437623-19437642 | MS.gene059921:intron | 35.0% |
| ! | ATCCTGCTGCATTTTTATGT+AGG | - | chr8.1:19434824-19434843 | MS.gene059921:intron | 35.0% |
| ! | TTTTTACCCCCCTGTAATAT+AGG | - | chr8.1:19435916-19435935 | MS.gene059921:intron | 35.0% |
| !! | CTTAGGTTGAACAATGATCT+TGG | - | chr8.1:19435412-19435431 | MS.gene059921:intron | 35.0% |
| !!! | TCTTTTTTACAGGGGAAAAC+CGG | + | chr8.1:19435948-19435967 | None:intergenic | 35.0% |
| ACAACCATGAATTCAGTTCC+AGG | + | chr8.1:19435358-19435377 | None:intergenic | 40.0% | |
| ACCAACACTTGTGAAGAAAG+AGG | - | chr8.1:19438923-19438942 | MS.gene059921:intron | 40.0% | |
| ACCTCTTTCTTCACAAGTGT+TGG | + | chr8.1:19438927-19438946 | None:intergenic | 40.0% | |
| ACTTCCTCCTAAAGAGGAAT+CGG | - | chr8.1:19435306-19435325 | MS.gene059921:intron | 40.0% | |
| AGAGCAAACAGAAAGTAAGC+TGG | + | chr8.1:19434438-19434457 | None:intergenic | 40.0% | |
| AGATAGGCACTAAAAGCTCA+GGG | - | chr8.1:19438000-19438019 | MS.gene059921:CDS | 40.0% | |
| AGTTCATAATCCCCTTAACC+GGG | + | chr8.1:19435604-19435623 | None:intergenic | 40.0% | |
| ATACCTTTGGATCACTTGCA+AGG | - | chr8.1:19438197-19438216 | MS.gene059921:intron | 40.0% | |
| ATGCAAATGTTCCCGGTTAA+GGG | - | chr8.1:19435590-19435609 | MS.gene059921:intron | 40.0% | |
| CAGAAAACTTCCTCCTAAAG+AGG | - | chr8.1:19435300-19435319 | MS.gene059921:intron | 40.0% | |
| CAGATGTTAGTGATGCAAGA+AGG | - | chr8.1:19438505-19438524 | MS.gene059921:intron | 40.0% | |
| CATAGACCAATGTTGCACAT+TGG | - | chr8.1:19434749-19434768 | MS.gene059921:intron | 40.0% | |
| CGACGGAATCTTCATATTAC+AGG | - | chr8.1:19437287-19437306 | MS.gene059921:intron | 40.0% | |
| CGACGGAATCTTCATATTAC+AGG | + | chr8.1:19437306-19437287 | None:intergenic | 40.0% | |
| CTCCCTTGAACCCATAAAAT+AGG | + | chr8.1:19435698-19435717 | None:intergenic | 40.0% | |
| CTTTCTGATGCAAATGTTCC+CGG | - | chr8.1:19435583-19435602 | MS.gene059921:intron | 40.0% | |
| GATTCAAATGTCATCACACC+TGG | - | chr8.1:19435337-19435356 | MS.gene059921:intron | 40.0% | |
| GGATAAAACAATCTGAGTGC+TGG | + | chr8.1:19434417-19434436 | None:intergenic | 40.0% | |
| GGTTGAACAATGATCTTGGT+TGG | - | chr8.1:19435416-19435435 | MS.gene059921:intron | 40.0% | |
| GTTACGAGAGGAATTTGAGA+GGG | - | chr8.1:19435273-19435292 | MS.gene059921:intron | 40.0% | |
| TAGATAGGCACTAAAAGCTC+AGG | - | chr8.1:19437999-19438018 | MS.gene059921:CDS | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | + | chr8.1:19438203-19438222 | None:intergenic | 40.0% | |
| TCGATTTCAGACATTGGTGA+TGG | - | chr8.1:19435724-19435743 | MS.gene059921:intron | 40.0% | |
| TGAAGAATCAAGGTTACGAG+AGG | - | chr8.1:19435261-19435280 | MS.gene059921:intron | 40.0% | |
| TGCTAAAGATGCATCTGATG+CGG | - | chr8.1:19434624-19434643 | MS.gene059921:intron | 40.0% | |
| ! | ACAGGGAGAACAAGCTTTAT+TGG | - | chr8.1:19438110-19438129 | MS.gene059921:intron | 40.0% |
| ! | CACATATGATGGAACAGTTC+AGG | + | chr8.1:19437744-19437763 | None:intergenic | 40.0% |
| ! | CTATTTTATGGGTTCAAGGG+AGG | - | chr8.1:19435696-19435715 | MS.gene059921:intron | 40.0% |
| ! | GTCTATTGTATAGGCTTTGG+AGG | - | chr8.1:19438468-19438487 | MS.gene059921:intron | 40.0% |
| !! | AAAGTTGCCGATTCCTCTTT+AGG | + | chr8.1:19435316-19435335 | None:intergenic | 40.0% |
| !! | ATTTCAGACATTGGTGATGG+TGG | - | chr8.1:19435727-19435746 | MS.gene059921:intron | 40.0% |
| !! | TGATGGTGGTCATGCTTTAA+TGG | - | chr8.1:19435741-19435760 | MS.gene059921:intron | 40.0% |
| !!! | TTTTTTACAGGGGGGAAAAC+CGG | - | chr8.1:19437328-19437347 | MS.gene059921:intron | 40.0% |
| AAAACACCCCTGGTCAAATC+TGG | + | chr8.1:19436026-19436007 | None:intergenic | 45.0% | |
| AACTCGCCTATATTACAGGG+GGG | + | chr8.1:19437370-19437351 | None:intergenic | 45.0% | |
| ACTCGGTAAAGATCTCAACC+TGG | + | chr8.1:19437644-19437663 | None:intergenic | 45.0% | |
| AGGAGTGACGTTTATGTGCA+GGG | - | chr8.1:19438884-19438903 | MS.gene059921:intron | 45.0% | |
| CACACCTGGAACTGAATTCA+TGG | - | chr8.1:19435351-19435370 | MS.gene059921:intron | 45.0% | |
| CCTGTAATATAGGCGAGTTC+CGG | - | chr8.1:19435926-19435945 | MS.gene059921:intron | 45.0% | |
| CCTGTAATATAGGCGAGTTC+CGG | + | chr8.1:19435945-19435926 | None:intergenic | 45.0% | |
| CGGAACTCGCCTATATTACA+GGG | - | chr8.1:19437348-19437367 | MS.gene059921:intron | 45.0% | |
| CGGAACTCGCCTATATTACA+GGG | + | chr8.1:19437367-19437348 | None:intergenic | 45.0% | |
| CTGAAGTATGTGTGTCTCAG+TGG | - | chr8.1:19435518-19435537 | MS.gene059921:intron | 45.0% | |
| CTGCTACACTCACATACCTT+TGG | - | chr8.1:19438184-19438203 | MS.gene059921:intron | 45.0% | |
| CTGGTGTTCTCTTGTGTGAT+AGG | - | chr8.1:19435234-19435253 | MS.gene059921:intron | 45.0% | |
| GAACTCGCCTATATTACAGG+GGG | - | chr8.1:19437350-19437369 | MS.gene059921:intron | 45.0% | |
| GAACTCGCCTATATTACAGG+GGG | + | chr8.1:19437369-19437350 | None:intergenic | 45.0% | |
| GAAGGAGAGATACTTACACC+AGG | + | chr8.1:19438541-19438560 | None:intergenic | 45.0% | |
| GATGCAAATGTTCCCGGTTA+AGG | - | chr8.1:19435589-19435608 | MS.gene059921:intron | 45.0% | |
| GGAACTCGCCTATATTACAG+GGG | - | chr8.1:19437349-19437368 | MS.gene059921:intron | 45.0% | |
| GGAACTCGCCTATATTACAG+GGG | + | chr8.1:19437368-19437349 | None:intergenic | 45.0% | |
| GGTTACGAGAGGAATTTGAG+AGG | - | chr8.1:19435272-19435291 | MS.gene059921:intron | 45.0% | |
| TAGGAGTGACGTTTATGTGC+AGG | - | chr8.1:19438883-19438902 | MS.gene059921:intron | 45.0% | |
| TATGTGCAGGGTTACCTGTA+AGG | - | chr8.1:19438896-19438915 | MS.gene059921:intron | 45.0% | |
| TGAACTGAAGGGAATGTGAG+CGG | + | chr8.1:19434550-19434569 | None:intergenic | 45.0% | |
| TGCAAATGTTCCCGGTTAAG+GGG | - | chr8.1:19435591-19435610 | MS.gene059921:intron | 45.0% | |
| TTCTGTGTGCATATGGGACT+CGG | - | chr8.1:19437580-19437599 | MS.gene059921:intron | 45.0% | |
| ! | CAAAGGTATGTGAGTGTAGC+AGG | + | chr8.1:19438186-19438205 | None:intergenic | 45.0% |
| ! | GCTGTTAGCTCTTCAGTTGA+AGG | + | chr8.1:19438624-19438643 | None:intergenic | 45.0% |
| !! | AAGTGTTGGTGACTCCTTAC+AGG | + | chr8.1:19438913-19438932 | None:intergenic | 45.0% |
| !!! | AAAAAATCATTTTTTTTTTT+TGG | - | chr8.1:19436395-19436414 | MS.gene059921:intron | 5.0% |
| !!! | CAATTTTTTTAAAAAAATTT+CGG | - | chr8.1:19437075-19437094 | MS.gene059921:intron | 5.0% |
| !!! | CAATTTTTTTAAAAAAATTT+CGG | + | chr8.1:19437094-19437075 | None:intergenic | 5.0% |
| ACGAGAGGAATTTGAGAGGG+AGG | - | chr8.1:19435276-19435295 | MS.gene059921:intron | 50.0% | |
| CAAGAAGGTCTTCTGACTCC+TGG | - | chr8.1:19438520-19438539 | MS.gene059921:intron | 50.0% | |
| CAGTGCCACGTCAGCAAAAA+AGG | + | chr8.1:19436067-19436086 | None:intergenic | 50.0% | |
| CCGGAACTCGCCTATATTAC+AGG | - | chr8.1:19437347-19437366 | MS.gene059921:intron | 50.0% | |
| CCGGAACTCGCCTATATTAC+AGG | + | chr8.1:19437366-19437347 | None:intergenic | 50.0% | |
| CGAGAGGAATTTGAGAGGGA+GGG | - | chr8.1:19435277-19435296 | MS.gene059921:intron | 50.0% | |
| CGTCAGCAAAAAAGGTGACG+TGG | + | chr8.1:19436059-19436078 | None:intergenic | 50.0% | |
| CGTGTGCAAGATTTGACCAG+GGG | + | chr8.1:19436016-19436035 | None:intergenic | 50.0% | |
| GCGTGTGCAAGATTTGACCA+GGG | + | chr8.1:19436017-19436036 | None:intergenic | 50.0% | |
| ! | TCGAAGACGGGCAGTCTTTT+CGG | - | chr8.1:19437611-19437630 | MS.gene059921:intron | 50.0% |
| !! | GTTGCCGATTCCTCTTTAGG+AGG | + | chr8.1:19435313-19435332 | None:intergenic | 50.0% |
| !!! | CGTCACCTTTTTTGCTGACG+TGG | - | chr8.1:19436059-19436078 | MS.gene059921:intron | 50.0% |
| !!! | TTGACCAGGGGTGTTTTCGA+CGG | - | chr8.1:19437270-19437289 | MS.gene059921:intron | 50.0% |
| !!! | TTGACCAGGGGTGTTTTCGA+CGG | + | chr8.1:19437289-19437270 | None:intergenic | 50.0% |
| CAGCTGAACATGCGTTGTGC+AGG | - | chr8.1:19438640-19438659 | MS.gene059921:intron | 55.0% | |
| CGTGTGCCAGATTTGACCAG+GGG | - | chr8.1:19437258-19437277 | MS.gene059921:intron | 55.0% | |
| GATTCCGTCGAAAACACCCC+TGG | - | chr8.1:19435997-19436016 | MS.gene059921:intron | 55.0% | |
| GATTCCGTCGAAAACACCCC+TGG | + | chr8.1:19436016-19435997 | None:intergenic | 55.0% | |
| GCGTGTGCCAGATTTGACCA+GGG | - | chr8.1:19437257-19437276 | MS.gene059921:intron | 55.0% | |
| GGCGTGTGCAAGATTTGACC+AGG | + | chr8.1:19436018-19436037 | None:intergenic | 55.0% | |
| GGTCAAATCTTGCACACGCC+AGG | - | chr8.1:19436018-19436037 | MS.gene059921:intron | 55.0% | |
| ! | CTCGGACTCTGACTCGAAGA+CGG | - | chr8.1:19437598-19437617 | MS.gene059921:intron | 55.0% |
| ! | TCGGACTCTGACTCGAAGAC+GGG | - | chr8.1:19437599-19437618 | MS.gene059921:intron | 55.0% |
| CAGTGTGCCACGTCATCACC+TGG | - | chr8.1:19437235-19437254 | MS.gene059921:intron | 60.0% | |
| GGCGTGTGCCAGATTTGACC+AGG | - | chr8.1:19437256-19437275 | MS.gene059921:intron | 60.0% | |
| GGTCAAATCTGGCACACGCC+AGG | + | chr8.1:19437256-19437275 | None:intergenic | 60.0% | |
| ! | GCACACGCCAGGTGATGACG+TGG | + | chr8.1:19437245-19437264 | None:intergenic | 65.0% |
| !! | GCACACGCCAGGTGCTGACG+TGG | - | chr8.1:19436029-19436048 | MS.gene059921:intron | 70.0% |
| TGGCGCGCCACGTCAGCACC+TGG | + | chr8.1:19436039-19436058 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 19434347 | 19438950 | 19434347 | ID=MS.gene059921 |
| chr8.1 | mRNA | 19434347 | 19438950 | 19434347 | ID=MS.gene059921.t1;Parent=MS.gene059921 |
| chr8.1 | exon | 19438942 | 19438950 | 19438942 | ID=MS.gene059921.t1.exon1;Parent=MS.gene059921.t1 |
| chr8.1 | CDS | 19438942 | 19438950 | 19438942 | ID=cds.MS.gene059921.t1;Parent=MS.gene059921.t1 |
| chr8.1 | exon | 19438652 | 19438693 | 19438652 | ID=MS.gene059921.t1.exon2;Parent=MS.gene059921.t1 |
| chr8.1 | CDS | 19438652 | 19438693 | 19438652 | ID=cds.MS.gene059921.t1;Parent=MS.gene059921.t1 |
| chr8.1 | exon | 19437847 | 19438041 | 19437847 | ID=MS.gene059921.t1.exon3;Parent=MS.gene059921.t1 |
| chr8.1 | CDS | 19437847 | 19438041 | 19437847 | ID=cds.MS.gene059921.t1;Parent=MS.gene059921.t1 |
| chr8.1 | exon | 19434861 | 19434914 | 19434861 | ID=MS.gene059921.t1.exon4;Parent=MS.gene059921.t1 |
| chr8.1 | CDS | 19434861 | 19434914 | 19434861 | ID=cds.MS.gene059921.t1;Parent=MS.gene059921.t1 |
| chr8.1 | exon | 19434754 | 19434816 | 19434754 | ID=MS.gene059921.t1.exon5;Parent=MS.gene059921.t1 |
| chr8.1 | CDS | 19434754 | 19434816 | 19434754 | ID=cds.MS.gene059921.t1;Parent=MS.gene059921.t1 |
| chr8.1 | exon | 19434568 | 19434635 | 19434568 | ID=MS.gene059921.t1.exon6;Parent=MS.gene059921.t1 |
| chr8.1 | CDS | 19434568 | 19434635 | 19434568 | ID=cds.MS.gene059921.t1;Parent=MS.gene059921.t1 |
| chr8.1 | exon | 19434347 | 19434392 | 19434347 | ID=MS.gene059921.t1.exon7;Parent=MS.gene059921.t1 |
| chr8.1 | CDS | 19434347 | 19434392 | 19434347 | ID=cds.MS.gene059921.t1;Parent=MS.gene059921.t1 |
| Gene Sequence |
| Protein sequence |
