Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97534.t1 | XP_003595124.1 | 92.2 | 90 | 7 | 0 | 1 | 90 | 1 | 90 | 5.30E-37 | 163.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97534.t1 | Q9SX38 | 40.2 | 117 | 68 | 1 | 1 | 115 | 1 | 117 | 4.0e-17 | 89.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97534.t1 | G7IID2 | 92.2 | 90 | 7 | 0 | 1 | 90 | 1 | 90 | 3.9e-37 | 163.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene97534 | 0.847629 | 1.02E-59 | -1.69E-46 |
MS.gene049343 | MS.gene97534 | 0.800924 | 1.15E-48 | -1.69E-46 |
MS.gene049404 | MS.gene97534 | 0.807045 | 6.12E-50 | -1.69E-46 |
MS.gene049452 | MS.gene97534 | 0.810673 | 1.03E-50 | -1.69E-46 |
MS.gene049499 | MS.gene97534 | 0.801977 | 6.98E-49 | -1.69E-46 |
MS.gene049669 | MS.gene97534 | 0.809069 | 2.27E-50 | -1.69E-46 |
MS.gene050026 | MS.gene97534 | 0.841527 | 4.50E-58 | -1.69E-46 |
MS.gene050029 | MS.gene97534 | 0.803283 | 3.75E-49 | -1.69E-46 |
MS.gene050043 | MS.gene97534 | 0.810383 | 1.18E-50 | -1.69E-46 |
MS.gene050073 | MS.gene97534 | 0.802345 | 5.86E-49 | -1.69E-46 |
MS.gene050430 | MS.gene97534 | 0.806618 | 7.54E-50 | -1.69E-46 |
MS.gene050750 | MS.gene97534 | 0.815857 | 7.46E-52 | -1.69E-46 |
MS.gene050953 | MS.gene97534 | 0.811925 | 5.49E-51 | -1.69E-46 |
MS.gene051181 | MS.gene97534 | 0.853822 | 1.85E-61 | -1.69E-46 |
MS.gene051198 | MS.gene97534 | 0.813288 | 2.76E-51 | -1.69E-46 |
MS.gene051247 | MS.gene97534 | 0.808219 | 3.45E-50 | -1.69E-46 |
MS.gene05125 | MS.gene97534 | 0.82365 | 1.24E-53 | -1.69E-46 |
MS.gene051279 | MS.gene97534 | 0.81913 | 1.37E-52 | -1.69E-46 |
MS.gene051332 | MS.gene97534 | 0.825803 | 3.84E-54 | -1.69E-46 |
MS.gene051490 | MS.gene97534 | 0.800952 | 1.13E-48 | -1.69E-46 |
MS.gene051492 | MS.gene97534 | 0.817776 | 2.77E-52 | -1.69E-46 |
MS.gene051594 | MS.gene97534 | 0.830306 | 3.16E-55 | -1.69E-46 |
MS.gene051710 | MS.gene97534 | 0.820227 | 7.67E-53 | -1.69E-46 |
MS.gene051744 | MS.gene97534 | 0.836806 | 7.54E-57 | -1.69E-46 |
MS.gene051800 | MS.gene97534 | 0.804236 | 2.38E-49 | -1.69E-46 |
MS.gene05191 | MS.gene97534 | 0.819098 | 1.39E-52 | -1.69E-46 |
MS.gene052208 | MS.gene97534 | 0.815524 | 8.85E-52 | -1.69E-46 |
MS.gene052333 | MS.gene97534 | 0.804568 | 2.03E-49 | -1.69E-46 |
MS.gene052447 | MS.gene97534 | 0.825277 | 5.12E-54 | -1.69E-46 |
MS.gene052519 | MS.gene97534 | 0.829749 | 4.33E-55 | -1.69E-46 |
MS.gene052534 | MS.gene97534 | 0.825589 | 4.32E-54 | -1.69E-46 |
MS.gene052582 | MS.gene97534 | 0.830033 | 3.69E-55 | -1.69E-46 |
MS.gene052584 | MS.gene97534 | 0.833496 | 5.16E-56 | -1.69E-46 |
MS.gene052586 | MS.gene97534 | 0.810471 | 1.13E-50 | -1.69E-46 |
MS.gene052685 | MS.gene97534 | 0.818889 | 1.55E-52 | -1.69E-46 |
MS.gene052773 | MS.gene97534 | 0.801348 | 9.39E-49 | -1.69E-46 |
MS.gene052867 | MS.gene97534 | 0.833739 | 4.49E-56 | -1.69E-46 |
MS.gene053082 | MS.gene97534 | 0.802217 | 6.23E-49 | -1.69E-46 |
MS.gene053145 | MS.gene97534 | 0.800977 | 1.12E-48 | -1.69E-46 |
MS.gene053154 | MS.gene97534 | 0.802727 | 4.89E-49 | -1.69E-46 |
MS.gene053166 | MS.gene97534 | 0.817007 | 4.12E-52 | -1.69E-46 |
MS.gene053226 | MS.gene97534 | 0.808021 | 3.80E-50 | -1.69E-46 |
MS.gene05329 | MS.gene97534 | 0.817477 | 3.23E-52 | -1.69E-46 |
MS.gene053592 | MS.gene97534 | 0.810133 | 1.34E-50 | -1.69E-46 |
MS.gene053883 | MS.gene97534 | 0.802133 | 6.48E-49 | -1.69E-46 |
MS.gene053974 | MS.gene97534 | 0.809282 | 2.04E-50 | -1.69E-46 |
MS.gene05410 | MS.gene97534 | 0.809838 | 1.55E-50 | -1.69E-46 |
MS.gene05414 | MS.gene97534 | 0.83149 | 1.62E-55 | -1.69E-46 |
MS.gene05415 | MS.gene97534 | 0.857408 | 1.67E-62 | -1.69E-46 |
MS.gene05422 | MS.gene97534 | 0.807786 | 4.26E-50 | -1.69E-46 |
MS.gene054236 | MS.gene97534 | 0.845082 | 5.07E-59 | -1.69E-46 |
MS.gene05423 | MS.gene97534 | 0.848629 | 5.43E-60 | -1.69E-46 |
MS.gene054291 | MS.gene97534 | -0.833362 | 5.57E-56 | -1.69E-46 |
MS.gene05435 | MS.gene97534 | 0.838614 | 2.59E-57 | -1.69E-46 |
MS.gene054405 | MS.gene97534 | 0.807879 | 4.07E-50 | -1.69E-46 |
MS.gene054576 | MS.gene97534 | 0.831693 | 1.44E-55 | -1.69E-46 |
MS.gene05458 | MS.gene97534 | 0.803146 | 4.01E-49 | -1.69E-46 |
MS.gene054651 | MS.gene97534 | 0.841907 | 3.57E-58 | -1.69E-46 |
MS.gene054775 | MS.gene97534 | 0.84361 | 1.26E-58 | -1.69E-46 |
MS.gene054801 | MS.gene97534 | 0.805886 | 1.08E-49 | -1.69E-46 |
MS.gene054991 | MS.gene97534 | 0.822834 | 1.92E-53 | -1.69E-46 |
MS.gene055058 | MS.gene97534 | 0.802864 | 4.58E-49 | -1.69E-46 |
MS.gene055227 | MS.gene97534 | 0.824178 | 9.29E-54 | -1.69E-46 |
MS.gene055228 | MS.gene97534 | 0.838755 | 2.38E-57 | -1.69E-46 |
MS.gene05531 | MS.gene97534 | 0.836089 | 1.15E-56 | -1.69E-46 |
MS.gene055586 | MS.gene97534 | 0.827545 | 1.48E-54 | -1.69E-46 |
MS.gene055589 | MS.gene97534 | 0.816181 | 6.31E-52 | -1.69E-46 |
MS.gene055701 | MS.gene97534 | 0.802576 | 5.25E-49 | -1.69E-46 |
MS.gene055725 | MS.gene97534 | 0.801619 | 8.27E-49 | -1.69E-46 |
MS.gene055818 | MS.gene97534 | 0.840445 | 8.66E-58 | -1.69E-46 |
MS.gene055926 | MS.gene97534 | 0.815284 | 1.00E-51 | -1.69E-46 |
MS.gene056050 | MS.gene97534 | 0.832276 | 1.04E-55 | -1.69E-46 |
MS.gene056162 | MS.gene97534 | 0.840663 | 7.59E-58 | -1.69E-46 |
MS.gene056173 | MS.gene97534 | 0.805224 | 1.48E-49 | -1.69E-46 |
MS.gene056174 | MS.gene97534 | 0.860051 | 2.70E-63 | -1.69E-46 |
MS.gene056252 | MS.gene97534 | 0.839127 | 1.91E-57 | -1.69E-46 |
MS.gene056272 | MS.gene97534 | 0.823844 | 1.11E-53 | -1.69E-46 |
MS.gene056366 | MS.gene97534 | 0.817942 | 2.54E-52 | -1.69E-46 |
MS.gene056373 | MS.gene97534 | 0.803692 | 3.09E-49 | -1.69E-46 |
MS.gene056595 | MS.gene97534 | 0.80003 | 1.74E-48 | -1.69E-46 |
MS.gene05669 | MS.gene97534 | 0.803673 | 3.12E-49 | -1.69E-46 |
MS.gene056854 | MS.gene97534 | 0.820645 | 6.15E-53 | -1.69E-46 |
MS.gene05686 | MS.gene97534 | 0.82113 | 4.75E-53 | -1.69E-46 |
MS.gene056973 | MS.gene97534 | 0.803071 | 4.15E-49 | -1.69E-46 |
MS.gene057012 | MS.gene97534 | 0.816569 | 5.17E-52 | -1.69E-46 |
MS.gene057021 | MS.gene97534 | 0.805153 | 1.53E-49 | -1.69E-46 |
MS.gene057026 | MS.gene97534 | 0.818242 | 2.17E-52 | -1.69E-46 |
MS.gene057208 | MS.gene97534 | 0.820321 | 7.30E-53 | -1.69E-46 |
MS.gene057414 | MS.gene97534 | 0.806554 | 7.77E-50 | -1.69E-46 |
MS.gene057444 | MS.gene97534 | 0.822052 | 2.91E-53 | -1.69E-46 |
MS.gene057598 | MS.gene97534 | 0.835648 | 1.48E-56 | -1.69E-46 |
MS.gene058010 | MS.gene97534 | 0.804958 | 1.68E-49 | -1.69E-46 |
MS.gene058037 | MS.gene97534 | 0.82343 | 1.39E-53 | -1.69E-46 |
MS.gene058294 | MS.gene97534 | 0.800102 | 1.69E-48 | -1.69E-46 |
MS.gene058515 | MS.gene97534 | 0.831659 | 1.47E-55 | -1.69E-46 |
MS.gene058617 | MS.gene97534 | 0.816114 | 6.53E-52 | -1.69E-46 |
MS.gene058625 | MS.gene97534 | 0.809499 | 1.84E-50 | -1.69E-46 |
MS.gene058979 | MS.gene97534 | 0.831893 | 1.29E-55 | -1.69E-46 |
MS.gene05925 | MS.gene97534 | 0.828727 | 7.65E-55 | -1.69E-46 |
MS.gene059272 | MS.gene97534 | 0.841374 | 4.94E-58 | -1.69E-46 |
MS.gene059276 | MS.gene97534 | 0.835819 | 1.34E-56 | -1.69E-46 |
MS.gene059382 | MS.gene97534 | 0.80805 | 3.75E-50 | -1.69E-46 |
MS.gene059438 | MS.gene97534 | 0.81217 | 4.85E-51 | -1.69E-46 |
MS.gene059439 | MS.gene97534 | 0.829008 | 6.54E-55 | -1.69E-46 |
MS.gene059440 | MS.gene97534 | 0.806366 | 8.52E-50 | -1.69E-46 |
MS.gene059458 | MS.gene97534 | 0.80089 | 1.17E-48 | -1.69E-46 |
MS.gene059459 | MS.gene97534 | 0.81255 | 4.01E-51 | -1.69E-46 |
MS.gene059460 | MS.gene97534 | 0.827921 | 1.20E-54 | -1.69E-46 |
MS.gene059584 | MS.gene97534 | 0.859622 | 3.64E-63 | -1.69E-46 |
MS.gene059625 | MS.gene97534 | 0.840193 | 1.01E-57 | -1.69E-46 |
MS.gene059921 | MS.gene97534 | 0.801205 | 1.00E-48 | -1.69E-46 |
MS.gene059924 | MS.gene97534 | 0.81123 | 7.77E-51 | -1.69E-46 |
MS.gene060011 | MS.gene97534 | 0.823082 | 1.68E-53 | -1.69E-46 |
MS.gene060167 | MS.gene97534 | 0.805002 | 1.65E-49 | -1.69E-46 |
MS.gene060365 | MS.gene97534 | 0.800415 | 1.46E-48 | -1.69E-46 |
MS.gene060373 | MS.gene97534 | 0.820791 | 5.69E-53 | -1.69E-46 |
MS.gene060520 | MS.gene97534 | 0.808641 | 2.80E-50 | -1.69E-46 |
MS.gene060521 | MS.gene97534 | 0.824849 | 6.46E-54 | -1.69E-46 |
MS.gene06052 | MS.gene97534 | 0.801786 | 7.64E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97534.t1 | MTR_2g038510 | 92.222 | 90 | 7 | 0 | 1 | 90 | 1 | 90 | 5.27e-52 | 175 |
MS.gene97534.t1 | MTR_7g015810 | 46.392 | 97 | 43 | 2 | 1 | 88 | 3 | 99 | 1.58e-24 | 90.1 |
MS.gene97534.t1 | MTR_7g015770 | 42.982 | 114 | 61 | 2 | 1 | 113 | 3 | 113 | 1.39e-23 | 94.7 |
MS.gene97534.t1 | MTR_5g071310 | 33.333 | 93 | 62 | 0 | 1 | 93 | 1 | 93 | 7.17e-13 | 63.9 |
MS.gene97534.t1 | MTR_5g070960 | 28.431 | 102 | 73 | 0 | 1 | 102 | 1 | 102 | 1.38e-11 | 60.5 |
MS.gene97534.t1 | MTR_5g072140 | 28.431 | 102 | 73 | 0 | 1 | 102 | 1 | 102 | 1.44e-11 | 60.5 |
MS.gene97534.t1 | MTR_5g070470 | 27.451 | 102 | 74 | 0 | 1 | 102 | 1 | 102 | 1.60e-11 | 60.1 |
MS.gene97534.t1 | MTR_5g072250 | 28.431 | 102 | 73 | 0 | 1 | 102 | 1 | 102 | 2.19e-11 | 59.7 |
MS.gene97534.t1 | MTR_3g012090 | 32.979 | 94 | 57 | 2 | 1 | 88 | 1 | 94 | 2.27e-11 | 59.7 |
MS.gene97534.t1 | MTR_5g021080 | 31.325 | 83 | 53 | 1 | 1 | 79 | 1 | 83 | 3.62e-11 | 59.3 |
MS.gene97534.t1 | MTR_1g022380 | 30.588 | 85 | 59 | 0 | 1 | 85 | 1 | 85 | 3.74e-11 | 59.3 |
MS.gene97534.t1 | MTR_7g071940 | 30.108 | 93 | 65 | 0 | 1 | 93 | 1 | 93 | 3.85e-11 | 59.3 |
MS.gene97534.t1 | MTR_5g072340 | 27.451 | 102 | 74 | 0 | 1 | 102 | 1 | 102 | 7.51e-11 | 58.2 |
MS.gene97534.t1 | MTR_5g071670 | 29.032 | 93 | 66 | 0 | 1 | 93 | 1 | 93 | 9.19e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97534.t1 | AT1G50180 | 40.708 | 113 | 65 | 1 | 1 | 111 | 1 | 113 | 2.54e-19 | 82.4 |
MS.gene97534.t1 | AT1G58390 | 39.759 | 83 | 50 | 0 | 1 | 83 | 1 | 83 | 4.93e-15 | 70.5 |
MS.gene97534.t1 | AT1G58390 | 39.759 | 83 | 50 | 0 | 1 | 83 | 1 | 83 | 4.93e-15 | 70.5 |
MS.gene97534.t1 | AT3G46730 | 41.463 | 82 | 48 | 0 | 1 | 82 | 1 | 82 | 6.50e-15 | 70.1 |
MS.gene97534.t1 | AT1G58400 | 33.333 | 87 | 58 | 0 | 1 | 87 | 1 | 87 | 2.97e-14 | 68.2 |
MS.gene97534.t1 | AT1G58400 | 33.333 | 87 | 58 | 0 | 1 | 87 | 1 | 87 | 3.30e-14 | 67.8 |
MS.gene97534.t1 | AT1G58400 | 33.333 | 87 | 58 | 0 | 1 | 87 | 1 | 87 | 3.30e-14 | 67.8 |
MS.gene97534.t1 | AT1G58807 | 37.349 | 83 | 52 | 0 | 1 | 83 | 1 | 83 | 5.39e-14 | 67.4 |
MS.gene97534.t1 | AT1G59124 | 37.349 | 83 | 52 | 0 | 1 | 83 | 1 | 83 | 5.39e-14 | 67.4 |
MS.gene97534.t1 | AT1G58807 | 37.349 | 83 | 52 | 0 | 1 | 83 | 1 | 83 | 6.08e-14 | 67.4 |
MS.gene97534.t1 | AT1G59124 | 37.349 | 83 | 52 | 0 | 1 | 83 | 1 | 83 | 6.08e-14 | 67.4 |
MS.gene97534.t1 | AT1G58848 | 37.349 | 83 | 52 | 0 | 1 | 83 | 1 | 83 | 7.32e-14 | 67.0 |
MS.gene97534.t1 | AT1G59218 | 37.349 | 83 | 52 | 0 | 1 | 83 | 1 | 83 | 7.32e-14 | 67.0 |
MS.gene97534.t1 | AT1G59218 | 37.349 | 83 | 52 | 0 | 1 | 83 | 1 | 83 | 7.32e-14 | 67.0 |
MS.gene97534.t1 | AT1G59218 | 37.349 | 83 | 52 | 0 | 1 | 83 | 1 | 83 | 7.32e-14 | 67.0 |
MS.gene97534.t1 | AT1G58848 | 37.349 | 83 | 52 | 0 | 1 | 83 | 1 | 83 | 7.32e-14 | 67.0 |
MS.gene97534.t1 | AT1G53350 | 36.145 | 83 | 53 | 0 | 1 | 83 | 1 | 83 | 1.35e-13 | 66.2 |
MS.gene97534.t1 | AT1G58602 | 36.145 | 83 | 53 | 0 | 1 | 83 | 1 | 83 | 1.80e-13 | 65.9 |
MS.gene97534.t1 | AT1G58602 | 36.145 | 83 | 53 | 0 | 1 | 83 | 1 | 83 | 1.80e-13 | 65.9 |
MS.gene97534.t1 | AT3G46710 | 39.535 | 86 | 52 | 0 | 1 | 86 | 1 | 86 | 4.73e-13 | 64.7 |
MS.gene97534.t1 | AT3G46530 | 35.789 | 95 | 58 | 1 | 1 | 92 | 1 | 95 | 2.05e-12 | 62.8 |
MS.gene97534.t1 | AT1G58410 | 36.709 | 79 | 50 | 0 | 5 | 83 | 3 | 81 | 3.58e-12 | 62.0 |
MS.gene97534.t1 | AT1G58410 | 36.709 | 79 | 50 | 0 | 5 | 83 | 3 | 81 | 3.58e-12 | 62.0 |
MS.gene97534.t1 | AT1G58410 | 36.709 | 79 | 50 | 0 | 5 | 83 | 3 | 81 | 3.58e-12 | 62.0 |
MS.gene97534.t1 | AT1G58410 | 36.709 | 79 | 50 | 0 | 5 | 83 | 3 | 81 | 3.71e-12 | 62.0 |
MS.gene97534.t1 | AT5G35450 | 33.735 | 83 | 55 | 0 | 1 | 83 | 1 | 83 | 2.01e-11 | 60.1 |
MS.gene97534.t1 | AT5G35450 | 33.735 | 83 | 55 | 0 | 1 | 83 | 1 | 83 | 2.01e-11 | 60.1 |
MS.gene97534.t1 | AT5G43470 | 30.682 | 88 | 61 | 0 | 1 | 88 | 1 | 88 | 2.15e-11 | 60.1 |
MS.gene97534.t1 | AT5G43470 | 30.682 | 88 | 61 | 0 | 1 | 88 | 1 | 88 | 2.15e-11 | 60.1 |
MS.gene97534.t1 | AT5G43470 | 30.682 | 88 | 61 | 0 | 1 | 88 | 1 | 88 | 2.15e-11 | 60.1 |
MS.gene97534.t1 | AT5G43470 | 30.682 | 88 | 61 | 0 | 1 | 88 | 1 | 88 | 2.15e-11 | 60.1 |
MS.gene97534.t1 | AT5G48620 | 31.325 | 83 | 57 | 0 | 1 | 83 | 1 | 83 | 4.37e-11 | 58.9 |
MS.gene97534.t1 | AT5G48620 | 31.325 | 83 | 57 | 0 | 1 | 83 | 1 | 83 | 4.37e-11 | 58.9 |
MS.gene97534.t1 | AT5G48620 | 31.325 | 83 | 57 | 0 | 1 | 83 | 1 | 83 | 4.37e-11 | 58.9 |
MS.gene97534.t1 | AT5G48620 | 31.325 | 83 | 57 | 0 | 1 | 83 | 1 | 83 | 4.37e-11 | 58.9 |
MS.gene97534.t1 | AT5G48620 | 31.325 | 83 | 57 | 0 | 1 | 83 | 1 | 83 | 4.37e-11 | 58.9 |
MS.gene97534.t1 | AT5G48620 | 31.325 | 83 | 57 | 0 | 1 | 83 | 1 | 83 | 4.37e-11 | 58.9 |
MS.gene97534.t1 | AT1G59780 | 35.366 | 82 | 53 | 0 | 1 | 82 | 1 | 82 | 5.15e-11 | 58.9 |
MS.gene97534.t1 | AT1G59780 | 35.366 | 82 | 53 | 0 | 1 | 82 | 6 | 87 | 5.73e-11 | 58.5 |
Find 10 sgRNAs with CRISPR-Local
Find 38 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGAAGTTGTGTTCTTATA+TGG | 0.260674 | 7.2:-74518639 | MS.gene97534:CDS |
AAGATGAATCTCTCAAGAAT+TGG | 0.362537 | 7.2:-74518533 | MS.gene97534:CDS |
ACCTGTCATGTTTCTTCTTG+AGG | 0.429591 | 7.2:+74518443 | None:intergenic |
TGTACTGTGAAGTCTATCAT+TGG | 0.440500 | 7.2:+74518684 | None:intergenic |
TCAAGTGGAGAAGAAGTGTT+TGG | 0.444195 | 7.2:-74518021 | MS.gene97534:CDS |
TGTGAAGTCTATCATTGGTT+TGG | 0.462179 | 7.2:+74518689 | None:intergenic |
AAAGTCTTAGAACTGAATTA+AGG | 0.463863 | 7.2:-74518599 | MS.gene97534:CDS |
AAATCTGTATCAAGTTCAAG+TGG | 0.573359 | 7.2:-74518036 | MS.gene97534:CDS |
GCCTCAAGAAGAAACATGAC+AGG | 0.606493 | 7.2:-74518444 | MS.gene97534:intron |
ACTTGTGAGTATGAAAGACG+AGG | 0.697547 | 7.2:-74518070 | MS.gene97534:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGAAAATGATGTTAATATTT+TGG | - | chr7.2:74518382-74518401 | MS.gene97534:intron | 15.0% |
!! | TATATCATAGTACTAAAGTT+AGG | - | chr7.2:74518498-74518517 | MS.gene97534:CDS | 20.0% |
!! | TTGGTTAATAACAACAATTA+GGG | - | chr7.2:74518413-74518432 | MS.gene97534:intron | 20.0% |
!! | TTTGGTTAATAACAACAATT+AGG | - | chr7.2:74518412-74518431 | MS.gene97534:intron | 20.0% |
!!! | AAAAGATTTGTTTCAATACA+TGG | - | chr7.2:74518299-74518318 | MS.gene97534:intron | 20.0% |
!!! | AAAGATTTGTTTCAATACAT+GGG | - | chr7.2:74518300-74518319 | MS.gene97534:intron | 20.0% |
!!! | AAATCTTTTGATTCTGTTTA+AGG | + | chr7.2:74518288-74518307 | None:intergenic | 20.0% |
! | AAAGTCTTAGAACTGAATTA+AGG | - | chr7.2:74518105-74518124 | MS.gene97534:intron | 25.0% |
!!! | ATGCAAAATTGTTGCTATTT+GGG | - | chr7.2:74518436-74518455 | MS.gene97534:intron | 25.0% |
!!! | TAATATTTTGGAGTCATGTT+TGG | - | chr7.2:74518394-74518413 | MS.gene97534:intron | 25.0% |
AAATCTGTATCAAGTTCAAG+TGG | - | chr7.2:74518668-74518687 | MS.gene97534:CDS | 30.0% | |
AAGATGAATCTCTCAAGAAT+TGG | - | chr7.2:74518171-74518190 | MS.gene97534:intron | 30.0% | |
AGGTTTAGGAAAAACAACAT+TGG | - | chr7.2:74518466-74518485 | MS.gene97534:CDS | 30.0% | |
GATGAAGTTGTGTTCTTATA+TGG | - | chr7.2:74518065-74518084 | MS.gene97534:CDS | 30.0% | |
TACTCTCATGTTATTGAAGA+GGG | - | chr7.2:74518347-74518366 | MS.gene97534:intron | 30.0% | |
TCTTCTCTTAACTCTTTAGA+AGG | + | chr7.2:74518614-74518633 | None:intergenic | 30.0% | |
TTACTCTCATGTTATTGAAG+AGG | - | chr7.2:74518346-74518365 | MS.gene97534:intron | 30.0% | |
! | GATGCAAAATTGTTGCTATT+TGG | - | chr7.2:74518435-74518454 | MS.gene97534:intron | 30.0% |
! | GTTATTGAAGAGGGTATAAT+TGG | - | chr7.2:74518356-74518375 | MS.gene97534:intron | 30.0% |
!! | AAAATTTTGAGAGCTTAGCT+TGG | - | chr7.2:74518522-74518541 | MS.gene97534:CDS | 30.0% |
!! | AAATTTTGAGAGCTTAGCTT+GGG | - | chr7.2:74518523-74518542 | MS.gene97534:CDS | 30.0% |
!! | TGCAAAATTGTTGCTATTTG+GGG | - | chr7.2:74518437-74518456 | MS.gene97534:intron | 30.0% |
ATCACAACATTGTCAAGCAA+GGG | - | chr7.2:74518553-74518572 | MS.gene97534:CDS | 35.0% | |
TATCACAACATTGTCAAGCA+AGG | - | chr7.2:74518552-74518571 | MS.gene97534:CDS | 35.0% | |
TGTACTGTGAAGTCTATCAT+TGG | + | chr7.2:74518023-74518042 | None:intergenic | 35.0% | |
! | TGTGAAGTCTATCATTGGTT+TGG | + | chr7.2:74518018-74518037 | None:intergenic | 35.0% |
!! | AATTGTTGCTATTTGGGGTA+TGG | - | chr7.2:74518442-74518461 | MS.gene97534:intron | 35.0% |
!! | ATTGTTGCTATTTGGGGTAT+GGG | - | chr7.2:74518443-74518462 | MS.gene97534:intron | 35.0% |
ACCTGTCATGTTTCTTCTTG+AGG | + | chr7.2:74518264-74518283 | None:intergenic | 40.0% | |
ACTTGTGAGTATGAAAGACG+AGG | - | chr7.2:74518634-74518653 | MS.gene97534:CDS | 40.0% | |
ATTGTCAAGCAAGGGATGTT+TGG | - | chr7.2:74518561-74518580 | MS.gene97534:CDS | 40.0% | |
TTGTCAAGCAAGGGATGTTT+GGG | - | chr7.2:74518562-74518581 | MS.gene97534:CDS | 40.0% | |
!! | TCAAGTGGAGAAGAAGTGTT+TGG | - | chr7.2:74518683-74518702 | MS.gene97534:CDS | 40.0% |
AAGCAAGGGATGTTTGGGAA+GGG | - | chr7.2:74518567-74518586 | MS.gene97534:CDS | 45.0% | |
GCCTCAAGAAGAAACATGAC+AGG | - | chr7.2:74518260-74518279 | MS.gene97534:intron | 45.0% | |
! | ATTTGGGGTATGGGAGGTTT+AGG | - | chr7.2:74518452-74518471 | MS.gene97534:CDS | 45.0% |
CAAGCAAGGGATGTTTGGGA+AGG | - | chr7.2:74518566-74518585 | MS.gene97534:CDS | 50.0% | |
!! | GTTGCTATTTGGGGTATGGG+AGG | - | chr7.2:74518446-74518465 | MS.gene97534:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 74518011 | 74518715 | 74518011 | ID=MS.gene97534 |
chr7.2 | mRNA | 74518011 | 74518715 | 74518011 | ID=MS.gene97534.t1;Parent=MS.gene97534 |
chr7.2 | exon | 74518445 | 74518715 | 74518445 | ID=MS.gene97534.t1.exon1;Parent=MS.gene97534.t1 |
chr7.2 | CDS | 74518445 | 74518715 | 74518445 | ID=cds.MS.gene97534.t1;Parent=MS.gene97534.t1 |
chr7.2 | exon | 74518011 | 74518105 | 74518011 | ID=MS.gene97534.t1.exon2;Parent=MS.gene97534.t1 |
chr7.2 | CDS | 74518011 | 74518105 | 74518011 | ID=cds.MS.gene97534.t1;Parent=MS.gene97534.t1 |
Gene Sequence |
Protein sequence |