Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05925.t1 | Q9FMR1 | 88.5 | 26 | 3 | 0 | 111 | 136 | 130 | 155 | 4.8e-06 | 52.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene05925 | 0.80438 | 2.22E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene05925 | 0.80224 | 6.16E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene05925 | 0.809739 | 1.63E-50 | -1.69E-46 |
| MS.gene05435 | MS.gene05925 | 0.818485 | 1.91E-52 | -1.69E-46 |
| MS.gene05925 | MS.gene059459 | 0.812833 | 3.47E-51 | -1.69E-46 |
| MS.gene05925 | MS.gene059460 | 0.804469 | 2.13E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene059625 | 0.817712 | 2.86E-52 | -1.69E-46 |
| MS.gene05925 | MS.gene059921 | 0.807526 | 4.84E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene06269 | 0.809272 | 2.05E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene063846 | 0.807945 | 3.94E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene064321 | 0.815493 | 8.99E-52 | -1.69E-46 |
| MS.gene05925 | MS.gene064614 | 0.807293 | 5.42E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene064718 | 0.826509 | 2.61E-54 | -1.69E-46 |
| MS.gene05925 | MS.gene065039 | 0.814536 | 1.47E-51 | -1.69E-46 |
| MS.gene05925 | MS.gene066335 | 0.809558 | 1.78E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene06633 | 0.800989 | 1.11E-48 | -1.69E-46 |
| MS.gene05925 | MS.gene067208 | 0.806725 | 7.16E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene068010 | 0.810623 | 1.05E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene068378 | 0.840364 | 9.09E-58 | -1.69E-46 |
| MS.gene05925 | MS.gene070582 | 0.824253 | 8.92E-54 | -1.69E-46 |
| MS.gene05925 | MS.gene070818 | 0.812354 | 4.42E-51 | -1.69E-46 |
| MS.gene05925 | MS.gene071330 | 0.802488 | 5.48E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene071442 | 0.806262 | 8.96E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene072915 | 0.801613 | 8.29E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene09504 | 0.808453 | 3.07E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene24211 | 0.800028 | 1.75E-48 | -1.69E-46 |
| MS.gene05925 | MS.gene25860 | 0.80171 | 7.92E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene27054 | 0.801085 | 1.06E-48 | -1.69E-46 |
| MS.gene05925 | MS.gene27720 | 0.807895 | 4.04E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene28461 | 0.814943 | 1.19E-51 | -1.69E-46 |
| MS.gene05925 | MS.gene31735 | 0.823976 | 1.04E-53 | -1.69E-46 |
| MS.gene05925 | MS.gene34251 | 0.810067 | 1.39E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene38011 | 0.834883 | 2.32E-56 | -1.69E-46 |
| MS.gene05925 | MS.gene38976 | 0.803845 | 2.87E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene45794 | 0.808576 | 2.89E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene47552 | 0.826821 | 2.20E-54 | -1.69E-46 |
| MS.gene05925 | MS.gene48800 | 0.800517 | 1.39E-48 | -1.69E-46 |
| MS.gene05925 | MS.gene50875 | 0.814342 | 1.62E-51 | -1.69E-46 |
| MS.gene05925 | MS.gene52061 | 0.802803 | 4.72E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene52525 | 0.813372 | 2.65E-51 | -1.69E-46 |
| MS.gene05925 | MS.gene53786 | 0.815061 | 1.12E-51 | -1.69E-46 |
| MS.gene05925 | MS.gene53827 | 0.824266 | 8.86E-54 | -1.69E-46 |
| MS.gene05925 | MS.gene54017 | 0.819373 | 1.20E-52 | -1.69E-46 |
| MS.gene05925 | MS.gene54287 | 0.808626 | 2.82E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene54288 | 0.808301 | 3.31E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene54320 | 0.815344 | 9.70E-52 | -1.69E-46 |
| MS.gene05925 | MS.gene54717 | 0.82708 | 1.91E-54 | -1.69E-46 |
| MS.gene05925 | MS.gene54921 | 0.814389 | 1.58E-51 | -1.69E-46 |
| MS.gene05925 | MS.gene61388 | 0.807866 | 4.10E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene66192 | 0.81009 | 1.37E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene66682 | 0.803873 | 2.83E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene68999 | 0.802798 | 4.73E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene73707 | 0.802777 | 4.78E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene77421 | 0.8052 | 1.50E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene77863 | 0.807432 | 5.07E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene78647 | 0.81964 | 1.04E-52 | -1.69E-46 |
| MS.gene05925 | MS.gene80427 | 0.811192 | 7.92E-51 | -1.69E-46 |
| MS.gene05925 | MS.gene80853 | 0.811334 | 7.37E-51 | -1.69E-46 |
| MS.gene05925 | MS.gene80877 | 0.801037 | 1.09E-48 | -1.69E-46 |
| MS.gene05925 | MS.gene81047 | 0.801409 | 9.13E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene82682 | 0.819487 | 1.13E-52 | -1.69E-46 |
| MS.gene05925 | MS.gene84994 | 0.80069 | 1.28E-48 | -1.69E-46 |
| MS.gene05925 | MS.gene86156 | 0.836731 | 7.88E-57 | -1.69E-46 |
| MS.gene05925 | MS.gene86255 | 0.807782 | 4.27E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene86258 | 0.810306 | 1.23E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene86606 | 0.803414 | 3.53E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene88539 | 0.832179 | 1.10E-55 | -1.69E-46 |
| MS.gene05925 | MS.gene93996 | 0.802969 | 4.36E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene97534 | 0.828727 | 7.65E-55 | -1.69E-46 |
| MS.gene05925 | MS.gene99849 | 0.808815 | 2.57E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTCTTCTTGGAACTTC+AGG | 0.302039 | 4.4:+2913499 | None:intergenic |
| CTTTCACAGATGTTGCACTA+TGG | 0.320183 | 4.4:-2916144 | MS.gene05925:intron |
| TGTAAATGACATAACAAATA+TGG | 0.321073 | 4.4:-2916118 | MS.gene05925:CDS |
| TTGGCACTAGGAGGTCTTCT+TGG | 0.336877 | 4.4:+2913490 | None:intergenic |
| TTCAGGTCTCAAGCTCTTCA+AGG | 0.366158 | 4.4:-2913605 | MS.gene05925:intron |
| GAAGTATGTTATAATGAATC+TGG | 0.375468 | 4.4:-2915058 | MS.gene05925:CDS |
| CTCATGGTGGATTGATGAAA+AGG | 0.416029 | 4.4:-2915092 | MS.gene05925:CDS |
| CTTATCGCACAAACCTCATC+TGG | 0.426151 | 4.4:+2916042 | None:intergenic |
| CAACCTCTTGCTTGGATGAA+CGG | 0.433307 | 4.4:+2917581 | None:intergenic |
| ACTTCAGGTTCAAATTCAAC+AGG | 0.454247 | 4.4:+2913514 | None:intergenic |
| TGAAAGAGAAGGAGAAGGAT+AGG | 0.459304 | 4.4:-2917654 | MS.gene05925:CDS |
| AGAGAAGGAGAAGGATAGGA+AGG | 0.460645 | 4.4:-2917650 | MS.gene05925:CDS |
| TTTCACAGATGTTGCACTAT+GGG | 0.471629 | 4.4:-2916143 | MS.gene05925:intron |
| AGTATCTCTTGAGGCTTAAG+TGG | 0.512161 | 4.4:-2916089 | MS.gene05925:CDS |
| TTAGTGTTTATAGGATCTCA+TGG | 0.522031 | 4.4:-2915108 | MS.gene05925:intron |
| TGGATGGTACTCGACATGAT+AGG | 0.524357 | 4.4:+2916062 | None:intergenic |
| TAGTCTTACAACTTGGCACT+AGG | 0.533540 | 4.4:+2913478 | None:intergenic |
| GGATAACATGGTGAAAGAGA+AGG | 0.556310 | 4.4:-2917665 | None:intergenic |
| TCATGGTGGATTGATGAAAA+GGG | 0.567065 | 4.4:-2915091 | MS.gene05925:CDS |
| CATGGTGAAAGAGAAGGAGA+AGG | 0.572457 | 4.4:-2917659 | MS.gene05925:CDS |
| GGTCAAAGAAGCTAAAATTG+AGG | 0.578369 | 4.4:-2917629 | MS.gene05925:CDS |
| AATATTCTAGTCTTACAACT+TGG | 0.587920 | 4.4:+2913471 | None:intergenic |
| TATGTTATAATGAATCTGGA+TGG | 0.606843 | 4.4:-2915054 | MS.gene05925:intron |
| ACACCGTTCATCCAAGCAAG+AGG | 0.619853 | 4.4:-2917584 | MS.gene05925:intron |
| TGGCTTATAAGTATCTCTTG+AGG | 0.626414 | 4.4:-2916098 | MS.gene05925:CDS |
| TCGCACAAACCTCATCTGGA+TGG | 0.647070 | 4.4:+2916046 | None:intergenic |
| TCTTACAACTTGGCACTAGG+AGG | 0.657101 | 4.4:+2913481 | None:intergenic |
| TGTCGAGTACCATCCAGATG+AGG | 0.672836 | 4.4:-2916055 | MS.gene05925:intron |
| GTGTTTATAGGATCTCATGG+TGG | 0.697855 | 4.4:-2915105 | MS.gene05925:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTAAGATTTTTATTG+GGG | + | chr4.4:2915511-2915530 | None:intergenic | 10.0% |
| !!! | TTTTTTTCATGATAAAAAAT+TGG | + | chr4.4:2915392-2915411 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAATGCTGTTA+CGG | + | chr4.4:2913959-2913978 | None:intergenic | 15.0% |
| !! | AAATCAAAAAATAAGAAAAG+CGG | + | chr4.4:2916513-2916532 | None:intergenic | 15.0% |
| !! | ATTATACTGAAAAGAAATAA+AGG | + | chr4.4:2914362-2914381 | None:intergenic | 15.0% |
| !! | CATGAAAAAAACTTATAAAT+TGG | - | chr4.4:2915401-2915420 | MS.gene05925:intron | 15.0% |
| !! | CATTATATTCTATTGAAATA+AGG | + | chr4.4:2914306-2914325 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGCATAAAAAGTT+TGG | + | chr4.4:2916915-2916934 | None:intergenic | 15.0% |
| !!! | AACAGCATTTTTTTTTTTTT+TGG | - | chr4.4:2913960-2913979 | MS.gene05925:intron | 15.0% |
| !!! | TTCAGAAATTGATTTTATTA+GGG | + | chr4.4:2917456-2917475 | None:intergenic | 15.0% |
| !!! | TTCTTTATATTCTATTGATT+TGG | - | chr4.4:2916261-2916280 | MS.gene05925:intron | 15.0% |
| !!! | TTGAAAATTGTTTTTAAGTT+GGG | - | chr4.4:2914157-2914176 | MS.gene05925:intron | 15.0% |
| !!! | TTTGAAAATTGTTTTTAAGT+TGG | - | chr4.4:2914156-2914175 | MS.gene05925:intron | 15.0% |
| !! | AAAGAATTAAACATAGTTGA+AGG | + | chr4.4:2914717-2914736 | None:intergenic | 20.0% |
| !! | AATCAAAAAATAAGAAAAGC+GGG | + | chr4.4:2916512-2916531 | None:intergenic | 20.0% |
| !! | AGAAAATTGTTAGTGTTTAT+AGG | - | chr4.4:2916024-2916043 | MS.gene05925:intron | 20.0% |
| !! | CCAATAAGATAATATTGAAA+AGG | + | chr4.4:2916737-2916756 | None:intergenic | 20.0% |
| !! | TATACAACATGTATATCAAA+AGG | + | chr4.4:2913867-2913886 | None:intergenic | 20.0% |
| !! | TCTAAATCATAGACATAAAA+TGG | + | chr4.4:2916667-2916686 | None:intergenic | 20.0% |
| !! | TGCATAAATAACCAATAAAA+TGG | + | chr4.4:2915596-2915615 | None:intergenic | 20.0% |
| !! | TGTAAATGACATAACAAATA+TGG | - | chr4.4:2915023-2915042 | MS.gene05925:intron | 20.0% |
| !! | TTATCAATTAAGACAAAGTT+AGG | + | chr4.4:2916194-2916213 | None:intergenic | 20.0% |
| !!! | AATATTTGAGGGTTTTAATT+TGG | - | chr4.4:2917335-2917354 | MS.gene05925:intron | 20.0% |
| !!! | AATTTGTTTATCAATTGTCT+AGG | + | chr4.4:2916885-2916904 | None:intergenic | 20.0% |
| !!! | ATAAATATTTCAGACGATTT+TGG | + | chr4.4:2917209-2917228 | None:intergenic | 20.0% |
| !!! | ATATTTGGTTTTAGAGTTAT+AGG | + | chr4.4:2914430-2914449 | None:intergenic | 20.0% |
| !!! | CCTTTTCAATATTATCTTAT+TGG | - | chr4.4:2916734-2916753 | MS.gene05925:intron | 20.0% |
| !!! | CTTCAGAAATTGATTTTATT+AGG | + | chr4.4:2917457-2917476 | None:intergenic | 20.0% |
| !!! | GATTTTAATGATTAAGATTG+TGG | - | chr4.4:2915442-2915461 | MS.gene05925:intron | 20.0% |
| !!! | TAAATATTTCAGACGATTTT+GGG | + | chr4.4:2917208-2917227 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGACTGATGAAAT+AGG | + | chr4.4:2917415-2917434 | None:intergenic | 20.0% |
| ! | ACAAATAGCTTCAACAAATT+TGG | + | chr4.4:2916344-2916363 | None:intergenic | 25.0% |
| ! | ATACTGAAAAGAAATAAAGG+TGG | + | chr4.4:2914359-2914378 | None:intergenic | 25.0% |
| ! | ATGATATATCAATTGCACAA+TGG | + | chr4.4:2914625-2914644 | None:intergenic | 25.0% |
| ! | ATTAAACATAGTTGAAGGTA+AGG | + | chr4.4:2914712-2914731 | None:intergenic | 25.0% |
| ! | ATTTATGACATGTTCAAACA+AGG | - | chr4.4:2917223-2917242 | MS.gene05925:intron | 25.0% |
| ! | CAAAACACAGCATATATAAT+AGG | + | chr4.4:2916137-2916156 | None:intergenic | 25.0% |
| ! | CTGTAAAATATTTAAGGGAA+AGG | - | chr4.4:2915933-2915952 | MS.gene05925:intron | 25.0% |
| ! | GAAGTATGTTATAATGAATC+TGG | - | chr4.4:2916083-2916102 | MS.gene05925:CDS | 25.0% |
| ! | GAATAGTAAGCTATATACAT+AGG | + | chr4.4:2914658-2914677 | None:intergenic | 25.0% |
| ! | GTATTTGATATTGAAAGTAG+CGG | + | chr4.4:2913815-2913834 | None:intergenic | 25.0% |
| ! | TAAAATAGCATATGCATGAT+AGG | - | chr4.4:2916613-2916632 | MS.gene05925:intron | 25.0% |
| ! | TATGTTATAATGAATCTGGA+TGG | - | chr4.4:2916087-2916106 | MS.gene05925:CDS | 25.0% |
| ! | TGCCACTGTAAAATATTTAA+GGG | - | chr4.4:2915928-2915947 | MS.gene05925:intron | 25.0% |
| ! | TTGCCACTGTAAAATATTTA+AGG | - | chr4.4:2915927-2915946 | MS.gene05925:intron | 25.0% |
| !! | AAAAAAACTGTGTTTTCAGA+CGG | - | chr4.4:2917095-2917114 | MS.gene05925:intron | 25.0% |
| !! | AAAGCATTATAGATGAGTAA+AGG | - | chr4.4:2914768-2914787 | MS.gene05925:intron | 25.0% |
| !! | ATGGTATGAATTTGATAACT+TGG | - | chr4.4:2913589-2913608 | MS.gene05925:CDS | 25.0% |
| !! | CCAATAAAATGGTATTGAAA+AGG | + | chr4.4:2915585-2915604 | None:intergenic | 25.0% |
| !! | CCTTTTCAATACCATTTTAT+TGG | - | chr4.4:2915582-2915601 | MS.gene05925:intron | 25.0% |
| !! | CTATTATATATGCTGTGTTT+TGG | - | chr4.4:2916135-2916154 | MS.gene05925:CDS | 25.0% |
| !! | GTACATTTGACATCATTTTA+AGG | - | chr4.4:2916283-2916302 | MS.gene05925:intron | 25.0% |
| !! | GTGTTTTCTTAAGCATATTT+AGG | - | chr4.4:2915785-2915804 | MS.gene05925:intron | 25.0% |
| !! | TCAGTATCTAATTCTAAAGA+TGG | - | chr4.4:2915889-2915908 | MS.gene05925:intron | 25.0% |
| !! | TTCCCTTAAATATTTTACAG+TGG | + | chr4.4:2915933-2915952 | None:intergenic | 25.0% |
| !!! | AAACACAGTTTTTTTAGTAG+TGG | + | chr4.4:2917090-2917109 | None:intergenic | 25.0% |
| !!! | ACTCTAAAACCAAATATTCA+AGG | - | chr4.4:2914433-2914452 | MS.gene05925:intron | 25.0% |
| !!! | ATCATGCATATGCTATTTTA+AGG | + | chr4.4:2916613-2916632 | None:intergenic | 25.0% |
| !!! | CTCTAAAACCAAATATTCAA+GGG | - | chr4.4:2914434-2914453 | MS.gene05925:intron | 25.0% |
| !!! | TGAAAACACGATTTTTGATT+CGG | + | chr4.4:2915872-2915891 | None:intergenic | 25.0% |
| !!! | TGGGTTATTTCTATGTATTT+CGG | - | chr4.4:2914176-2914195 | MS.gene05925:intron | 25.0% |
| AAAGGTGGACATATAACTTA+AGG | + | chr4.4:2914344-2914363 | None:intergenic | 30.0% | |
| AACCACATTTAATCATGTAG+TGG | + | chr4.4:2916712-2916731 | None:intergenic | 30.0% | |
| AACGTAAATGGTAACACATT+TGG | + | chr4.4:2916321-2916340 | None:intergenic | 30.0% | |
| AACTTGGATTCATTCATTTG+TGG | - | chr4.4:2913605-2913624 | MS.gene05925:intron | 30.0% | |
| AAGCAAGAGGTTGAAAATAA+TGG | - | chr4.4:2913570-2913589 | MS.gene05925:CDS | 30.0% | |
| AAGCTCAGATTTATCAACAA+TGG | - | chr4.4:2914228-2914247 | MS.gene05925:intron | 30.0% | |
| AATGCATCATTCTTGAGTTA+TGG | - | chr4.4:2914527-2914546 | MS.gene05925:intron | 30.0% | |
| CAATTTCACGATAGAATTCA+AGG | + | chr4.4:2914112-2914131 | None:intergenic | 30.0% | |
| CTCAAGTCATCATCAAAAAT+TGG | + | chr4.4:2913837-2913856 | None:intergenic | 30.0% | |
| CTTGAATTCTATCGTGAAAT+TGG | - | chr4.4:2914110-2914129 | MS.gene05925:intron | 30.0% | |
| GTGTACTTAAGATGAATTTG+CGG | - | chr4.4:2916767-2916786 | MS.gene05925:intron | 30.0% | |
| GTGTTTATTCCTATTCAACT+TGG | + | chr4.4:2913747-2913766 | None:intergenic | 30.0% | |
| TCAAAATTTCACACGGATTT+GGG | + | chr4.4:2917297-2917316 | None:intergenic | 30.0% | |
| TCCGAAAAAATCAGACAAAA+AGG | + | chr4.4:2917137-2917156 | None:intergenic | 30.0% | |
| TGTATATCAGACTCAAAAGT+GGG | + | chr4.4:2915749-2915768 | None:intergenic | 30.0% | |
| TTAGTGTTTATAGGATCTCA+TGG | - | chr4.4:2916033-2916052 | MS.gene05925:intron | 30.0% | |
| TTCCACTACATGATTAAATG+TGG | - | chr4.4:2916707-2916726 | MS.gene05925:intron | 30.0% | |
| TTGCAGAACTCTTAAAAACT+TGG | + | chr4.4:2913769-2913788 | None:intergenic | 30.0% | |
| TTGTATATCAGACTCAAAAG+TGG | + | chr4.4:2915750-2915769 | None:intergenic | 30.0% | |
| TTTACAGTGGCAAAGTAAAT+TGG | + | chr4.4:2915920-2915939 | None:intergenic | 30.0% | |
| TTTATTAGGGTTGTGAAAGA+GGG | + | chr4.4:2917443-2917462 | None:intergenic | 30.0% | |
| TTTGACTGATGAAATAGGAA+AGG | + | chr4.4:2917410-2917429 | None:intergenic | 30.0% | |
| ! | ATTATTTTCAACCTCTTGCT+TGG | + | chr4.4:2913571-2913590 | None:intergenic | 30.0% |
| ! | CAACAAATTTGGAACGTAAA+TGG | + | chr4.4:2916333-2916352 | None:intergenic | 30.0% |
| ! | GCCTTTTTGTCTGATTTTTT+CGG | - | chr4.4:2917133-2917152 | MS.gene05925:intron | 30.0% |
| ! | TGTTAATCTGATAGTGTCAA+TGG | + | chr4.4:2914816-2914835 | None:intergenic | 30.0% |
| ! | TGTTGAAATTGACTTAGTCA+TGG | - | chr4.4:2915695-2915714 | MS.gene05925:intron | 30.0% |
| ! | TTTTATTAGGGTTGTGAAAG+AGG | + | chr4.4:2917444-2917463 | None:intergenic | 30.0% |
| !! | ATACTCTTTTATAGAGGCAT+GGG | + | chr4.4:2915333-2915352 | None:intergenic | 30.0% |
| !!! | GTTGTTGTCACTTTGTTTTT+CGG | + | chr4.4:2916998-2917017 | None:intergenic | 30.0% |
| !!! | TGAAATTTTGAGACGGATTT+CGG | - | chr4.4:2917306-2917325 | MS.gene05925:intron | 30.0% |
| !!! | TTTTGTCTGATTTTTTCGGA+CGG | - | chr4.4:2917137-2917156 | MS.gene05925:intron | 30.0% |
| AAAATTCGAAGTGAGAGAAG+AGG | + | chr4.4:2917374-2917393 | None:intergenic | 35.0% | |
| AAATTCGAAGTGAGAGAAGA+GGG | + | chr4.4:2917373-2917392 | None:intergenic | 35.0% | |
| AAGAGTTCTGCAATTGTTTG+TGG | - | chr4.4:2913776-2913795 | MS.gene05925:intron | 35.0% | |
| ACTTAAGATGAATTTGCGGA+GGG | - | chr4.4:2916771-2916790 | MS.gene05925:intron | 35.0% | |
| ATCCGTCTCAAAATTTCACA+CGG | + | chr4.4:2917304-2917323 | None:intergenic | 35.0% | |
| CATGCCTCTATAAAAGAGTA+TGG | - | chr4.4:2915332-2915351 | MS.gene05925:intron | 35.0% | |
| CCAAAAAGTTTCACATCTCA+TGG | + | chr4.4:2916368-2916387 | None:intergenic | 35.0% | |
| CGGATAATGCACAATGTAAT+TGG | + | chr4.4:2915852-2915871 | None:intergenic | 35.0% | |
| CTCAAAATTTCACACGGATT+TGG | + | chr4.4:2917298-2917317 | None:intergenic | 35.0% | |
| GAAGAGTTTGAGAATGTTCT+TGG | + | chr4.4:2917498-2917517 | None:intergenic | 35.0% | |
| GAGTAATAGATTGAAAAGCG+TGG | + | chr4.4:2913909-2913928 | None:intergenic | 35.0% | |
| GATTAGAATCACCATAGAAC+TGG | - | chr4.4:2913719-2913738 | MS.gene05925:intron | 35.0% | |
| GGTCAAAGAAGCTAAAATTG+AGG | - | chr4.4:2913512-2913531 | MS.gene05925:CDS | 35.0% | |
| GTAATATGTGATGTTGTGCA+AGG | - | chr4.4:2915202-2915221 | MS.gene05925:intron | 35.0% | |
| GTTCGTGTATCTATCATACA+TGG | - | chr4.4:2914935-2914954 | MS.gene05925:intron | 35.0% | |
| TAAGGAACAATCTTGCACAT+TGG | + | chr4.4:2914288-2914307 | None:intergenic | 35.0% | |
| TACCATCACATGAAAATTGC+CGG | - | chr4.4:2913993-2914012 | MS.gene05925:intron | 35.0% | |
| TACTTAAGATGAATTTGCGG+AGG | - | chr4.4:2916770-2916789 | MS.gene05925:intron | 35.0% | |
| TATGCATGATAGGCAACTTA+AGG | - | chr4.4:2916623-2916642 | MS.gene05925:intron | 35.0% | |
| TGGCTTATAAGTATCTCTTG+AGG | - | chr4.4:2915043-2915062 | MS.gene05925:intron | 35.0% | |
| TTATTAGGGTTGTGAAAGAG+GGG | + | chr4.4:2917442-2917461 | None:intergenic | 35.0% | |
| TTCGGACGGTTAATATTTGA+GGG | - | chr4.4:2917324-2917343 | MS.gene05925:intron | 35.0% | |
| TTTCACAGATGTTGCACTAT+GGG | - | chr4.4:2914998-2915017 | MS.gene05925:intron | 35.0% | |
| TTTCGGACGGTTAATATTTG+AGG | - | chr4.4:2917323-2917342 | MS.gene05925:intron | 35.0% | |
| ! | AATAGATTGAAAAGCGTGGT+TGG | + | chr4.4:2913905-2913924 | None:intergenic | 35.0% |
| ! | ACTTCAGGTTCAAATTCAAC+AGG | + | chr4.4:2917630-2917649 | None:intergenic | 35.0% |
| ! | ATAGATTGAAAAGCGTGGTT+GGG | + | chr4.4:2913904-2913923 | None:intergenic | 35.0% |
| ! | CAATCTTTTGATCGTTTTCG+TGG | - | chr4.4:2917591-2917610 | MS.gene05925:CDS | 35.0% |
| ! | CATAACCAACTACTGAGTTT+TGG | - | chr4.4:2916225-2916244 | MS.gene05925:intron | 35.0% |
| ! | CATACTCTTTTATAGAGGCA+TGG | + | chr4.4:2915334-2915353 | None:intergenic | 35.0% |
| ! | CATTTTCTGTTTCGTTTTGC+TGG | - | chr4.4:2914913-2914932 | MS.gene05925:intron | 35.0% |
| ! | CCATGAGATGTGAAACTTTT+TGG | - | chr4.4:2916365-2916384 | MS.gene05925:intron | 35.0% |
| ! | GTGTCCATACTCTTTTATAG+AGG | + | chr4.4:2915339-2915358 | None:intergenic | 35.0% |
| ! | GTGTTTTCAGACGGAATTTT+CGG | - | chr4.4:2917104-2917123 | MS.gene05925:intron | 35.0% |
| ! | TGATAGTGTCAATGGCTAAA+TGG | + | chr4.4:2914808-2914827 | None:intergenic | 35.0% |
| ! | TTCACGTTTTCAATCTCTTC+AGG | - | chr4.4:2917519-2917538 | MS.gene05925:intron | 35.0% |
| !! | ATCCGTGTGAAATTTTGAGA+CGG | - | chr4.4:2917299-2917318 | MS.gene05925:intron | 35.0% |
| !! | GCATATATTGGCGTTGTTTT+TGG | - | chr4.4:2915669-2915688 | MS.gene05925:intron | 35.0% |
| !! | GGCTGATTTTGTGTTTTTGT+GGG | + | chr4.4:2917032-2917051 | None:intergenic | 35.0% |
| !! | TATTTCAGACGATTTTGGGA+CGG | + | chr4.4:2917204-2917223 | None:intergenic | 35.0% |
| !! | TCATGGTGGATTGATGAAAA+GGG | - | chr4.4:2916050-2916069 | MS.gene05925:intron | 35.0% |
| !! | TGCTTTTGACTCTAACAGAT+GGG | + | chr4.4:2914405-2914424 | None:intergenic | 35.0% |
| !! | TTGCTTTTGACTCTAACAGA+TGG | + | chr4.4:2914406-2914425 | None:intergenic | 35.0% |
| !!! | GTGATTTTTGCTGTTTGAGT+TGG | - | chr4.4:2915234-2915253 | MS.gene05925:intron | 35.0% |
| !!! | TGATTTTTTCGGACGGATTT+GGG | - | chr4.4:2917144-2917163 | MS.gene05925:intron | 35.0% |
| AAAATCCGTGCGAAATTCGT+GGG | + | chr4.4:2917255-2917274 | None:intergenic | 40.0% | |
| AAAATGCTGTTACGGCAGTT+AGG | + | chr4.4:2913951-2913970 | None:intergenic | 40.0% | |
| AAATGCTGTTACGGCAGTTA+GGG | + | chr4.4:2913950-2913969 | None:intergenic | 40.0% | |
| AATTTCACACGGATTTGGGA+CGG | + | chr4.4:2917293-2917312 | None:intergenic | 40.0% | |
| AGTATCTCTTGAGGCTTAAG+TGG | - | chr4.4:2915052-2915071 | MS.gene05925:intron | 40.0% | |
| CAATATATGCACCAACGTAG+TGG | + | chr4.4:2915659-2915678 | None:intergenic | 40.0% | |
| CACTACGTTGGTGCATATAT+TGG | - | chr4.4:2915657-2915676 | MS.gene05925:intron | 40.0% | |
| CAGTCACACCCTTGAATATT+TGG | + | chr4.4:2914445-2914464 | None:intergenic | 40.0% | |
| CTTTCACAGATGTTGCACTA+TGG | - | chr4.4:2914997-2915016 | MS.gene05925:intron | 40.0% | |
| GAAGCTGCACATATCAAGTT+GGG | - | chr4.4:2914053-2914072 | MS.gene05925:intron | 40.0% | |
| GGTTATTTATGCAGCACACT+TGG | - | chr4.4:2915603-2915622 | MS.gene05925:intron | 40.0% | |
| GTGTTTATAGGATCTCATGG+TGG | - | chr4.4:2916036-2916055 | MS.gene05925:intron | 40.0% | |
| TCAACTTGGTACCAGTTCTA+TGG | + | chr4.4:2913733-2913752 | None:intergenic | 40.0% | |
| TCACTCCAAAACTCAGTAGT+TGG | + | chr4.4:2916233-2916252 | None:intergenic | 40.0% | |
| TGAAAGAGAAGGAGAAGGAT+AGG | - | chr4.4:2913487-2913506 | MS.gene05925:CDS | 40.0% | |
| TGAAGCTGCACATATCAAGT+TGG | - | chr4.4:2914052-2914071 | MS.gene05925:intron | 40.0% | |
| ! | AGTCGTGCTTTTGTTAGGAT+CGG | + | chr4.4:2917053-2917072 | None:intergenic | 40.0% |
| ! | GAACTGGTACCAAGTTGAAT+AGG | - | chr4.4:2913735-2913754 | MS.gene05925:intron | 40.0% |
| ! | GATCGTTTTCGTGGTTTTCT+TGG | - | chr4.4:2917600-2917619 | MS.gene05925:CDS | 40.0% |
| ! | TTTCAGACGGAATTTTCGGA+CGG | - | chr4.4:2917108-2917127 | MS.gene05925:intron | 40.0% |
| !! | CGGCTGATTTTGTGTTTTTG+TGG | + | chr4.4:2917033-2917052 | None:intergenic | 40.0% |
| !! | CTCATGGTGGATTGATGAAA+AGG | - | chr4.4:2916049-2916068 | MS.gene05925:intron | 40.0% |
| !! | TTTGTGTTTTTGTGGGTGTG+TGG | + | chr4.4:2917025-2917044 | None:intergenic | 40.0% |
| !!! | ACTACTGAGTTTTGGAGTGA+TGG | - | chr4.4:2916233-2916252 | MS.gene05925:intron | 40.0% |
| !!! | ATTTTGAGACGGATTTCGGA+CGG | - | chr4.4:2917310-2917329 | MS.gene05925:intron | 40.0% |
| !!! | CTACTGAGTTTTGGAGTGAT+GGG | - | chr4.4:2916234-2916253 | MS.gene05925:intron | 40.0% |
| !!! | CTGATTTTTTCGGACGGATT+TGG | - | chr4.4:2917143-2917162 | MS.gene05925:intron | 40.0% |
| !!! | TACTGAGTTTTGGAGTGATG+GGG | - | chr4.4:2916235-2916254 | MS.gene05925:intron | 40.0% |
| AAAGTAGCGGCAACGCAAAT+CGG | + | chr4.4:2913802-2913821 | None:intergenic | 45.0% | |
| AAATTGCCGGCAAGTGGAAA+CGG | - | chr4.4:2914006-2914025 | MS.gene05925:intron | 45.0% | |
| ACATGAAAATTGCCGGCAAG+TGG | - | chr4.4:2914000-2914019 | MS.gene05925:intron | 45.0% | |
| AGAGAAGGAGAAGGATAGGA+AGG | - | chr4.4:2913491-2913510 | MS.gene05925:CDS | 45.0% | |
| CAACCTCTTGCTTGGATGAA+CGG | + | chr4.4:2913563-2913582 | None:intergenic | 45.0% | |
| CTTATCGCACAAACCTCATC+TGG | + | chr4.4:2915102-2915121 | None:intergenic | 45.0% | |
| GAAAATCCGTGCGAAATTCG+TGG | + | chr4.4:2917256-2917275 | None:intergenic | 45.0% | |
| TAGTCATGCTTCCACTACGT+TGG | - | chr4.4:2915645-2915664 | MS.gene05925:intron | 45.0% | |
| TATCTTCCGTTTCCACTTGC+CGG | + | chr4.4:2914015-2914034 | None:intergenic | 45.0% | |
| TGGATGGTACTCGACATGAT+AGG | + | chr4.4:2915082-2915101 | None:intergenic | 45.0% | |
| TTCAGGTCTCAAGCTCTTCA+AGG | - | chr4.4:2917536-2917555 | MS.gene05925:intron | 45.0% | |
| TTGTTCCCACGAATTTCGCA+CGG | - | chr4.4:2917247-2917266 | MS.gene05925:intron | 45.0% | |
| ! | AGCAGAGTCGTGCTTTTGTT+AGG | + | chr4.4:2917058-2917077 | None:intergenic | 45.0% |
| ! | CGGATTTGGGACAGTTTCAA+CGG | - | chr4.4:2917157-2917176 | MS.gene05925:intron | 45.0% |
| ! | TGCCGGCAATTTTCATGTGA+TGG | + | chr4.4:2913998-2914017 | None:intergenic | 45.0% |
| !! | TATCAAGTTGGGTGCTCTGA+TGG | - | chr4.4:2914064-2914083 | MS.gene05925:intron | 45.0% |
| !!! | AGACGATTTTGGGACGGATT+TGG | + | chr4.4:2917198-2917217 | None:intergenic | 45.0% |
| !!! | GACGATTTTGGGACGGATTT+GGG | + | chr4.4:2917197-2917216 | None:intergenic | 45.0% |
| !!! | AATTTTATTAAGATTTTTAT+TGG | + | chr4.4:2915513-2915532 | None:intergenic | 5.0% |
| !!! | ATTTTATTAAGATTTTTATT+GGG | + | chr4.4:2915512-2915531 | None:intergenic | 5.0% |
| AAGTTGGGTGCTCTGATGGT+TGG | - | chr4.4:2914068-2914087 | MS.gene05925:intron | 50.0% | |
| ACACCGTTCATCCAAGCAAG+AGG | - | chr4.4:2913557-2913576 | MS.gene05925:CDS | 50.0% | |
| GGAGGTCTTCTTGGAACTTC+AGG | + | chr4.4:2917645-2917664 | None:intergenic | 50.0% | |
| TACGGCAGTTAGGGAAGAAG+CGG | + | chr4.4:2913941-2913960 | None:intergenic | 50.0% | |
| TCGCACAAACCTCATCTGGA+TGG | + | chr4.4:2915098-2915117 | None:intergenic | 50.0% | |
| TGTCGAGTACCATCCAGATG+AGG | - | chr4.4:2915086-2915105 | MS.gene05925:CDS | 50.0% | |
| TTGGCACTAGGAGGTCTTCT+TGG | + | chr4.4:2917654-2917673 | None:intergenic | 50.0% | |
| AGGGAAGAAGCGGAGGAGTA+AGG | + | chr4.4:2913931-2913950 | None:intergenic | 55.0% | |
| GGCAGTTAGGGAAGAAGCGG+AGG | + | chr4.4:2913938-2913957 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 2913483 | 2917680 | 2913483 | ID=MS.gene05925 |
| chr4.4 | mRNA | 2913483 | 2917680 | 2913483 | ID=MS.gene05925.t1;Parent=MS.gene05925 |
| chr4.4 | exon | 2917585 | 2917680 | 2917585 | ID=MS.gene05925.t1.exon1;Parent=MS.gene05925.t1 |
| chr4.4 | CDS | 2917585 | 2917680 | 2917585 | ID=cds.MS.gene05925.t1;Parent=MS.gene05925.t1 |
| chr4.4 | exon | 2916056 | 2916157 | 2916056 | ID=MS.gene05925.t1.exon2;Parent=MS.gene05925.t1 |
| chr4.4 | CDS | 2916056 | 2916157 | 2916056 | ID=cds.MS.gene05925.t1;Parent=MS.gene05925.t1 |
| chr4.4 | exon | 2915966 | 2915981 | 2915966 | ID=MS.gene05925.t1.exon3;Parent=MS.gene05925.t1 |
| chr4.4 | CDS | 2915966 | 2915981 | 2915966 | ID=cds.MS.gene05925.t1;Parent=MS.gene05925.t1 |
| chr4.4 | exon | 2915055 | 2915117 | 2915055 | ID=MS.gene05925.t1.exon4;Parent=MS.gene05925.t1 |
| chr4.4 | CDS | 2915055 | 2915117 | 2915055 | ID=cds.MS.gene05925.t1;Parent=MS.gene05925.t1 |
| chr4.4 | exon | 2913483 | 2913622 | 2913483 | ID=MS.gene05925.t1.exon5;Parent=MS.gene05925.t1 |
| chr4.4 | CDS | 2913483 | 2913622 | 2913483 | ID=cds.MS.gene05925.t1;Parent=MS.gene05925.t1 |
| Gene Sequence |
| Protein sequence |
