AlfalfaGEDB | MS.gene77421

M. sativa cultivar XinJiangDaYe / MS.gene77421

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF20160.2

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77421.t1	KEH28833.1	38.9	853	144	12	73	553	135	982	2.80E-125	459.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77421.t1	Q9C7X0	31.9	254	149	8	101	339	443	687	1.2e-20	102.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77421.t1	A0A072UIB7	38.9	853	144	12	73	553	135	982	2.0e-125	459.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene77421	0.800878	1.17E-48	-1.69E-46
MS.gene050026	MS.gene77421	0.808671	2.76E-50	-1.69E-46
MS.gene054236	MS.gene77421	0.806212	9.18E-50	-1.69E-46
MS.gene056174	MS.gene77421	0.809182	2.15E-50	-1.69E-46
MS.gene057598	MS.gene77421	0.800774	1.23E-48	-1.69E-46
MS.gene058515	MS.gene77421	0.840958	6.35E-58	-1.69E-46
MS.gene058979	MS.gene77421	0.806418	8.31E-50	-1.69E-46
MS.gene05925	MS.gene77421	0.8052	1.50E-49	-1.69E-46
MS.gene059439	MS.gene77421	0.805025	1.63E-49	-1.69E-46
MS.gene059921	MS.gene77421	0.808737	2.67E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77421.t1	MTR_4g013370	53.463	462	123	14	177	553	528	982	2.04e-137	423
MS.gene77421.t1	MTR_4g013370	66.667	114	35	1	72	182	134	247	6.76e-25	110
MS.gene77421.t1	MTR_4g013375	51.585	347	119	8	202	535	765	1075	1.28e-93	309
MS.gene77421.t1	MTR_4g013375	62.308	130	44	2	58	184	343	470	9.03e-27	115
MS.gene77421.t1	MTR_4g014220	45.175	456	140	14	177	531	579	1025	2.36e-93	308
MS.gene77421.t1	MTR_4g014220	60.550	109	43	0	74	182	194	302	1.88e-24	108
MS.gene77421.t1	MTR_4g014340	49.606	381	136	13	202	530	717	1093	1.11e-89	298
MS.gene77421.t1	MTR_4g014340	58.101	179	56	3	177	338	584	760	5.79e-49	183
MS.gene77421.t1	MTR_4g014340	69.369	111	34	0	72	182	196	306	6.95e-31	128
MS.gene77421.t1	MTR_4g014280	47.814	366	126	11	202	531	721	1057	7.78e-85	285

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77421.t1	AT2G16870	43.226	155	80	4	177	329	247	395	1.30e-25	112
MS.gene77421.t1	AT2G16870	43.226	155	80	4	177	329	247	395	1.30e-25	112
MS.gene77421.t1	AT2G16870	40.237	169	92	4	177	339	521	686	1.44e-25	112
MS.gene77421.t1	AT2G16870	34.615	104	66	2	74	175	138	241	6.58e-11	65.9
MS.gene77421.t1	AT5G41540	41.916	167	90	4	178	339	525	689	3.03e-25	111
MS.gene77421.t1	AT5G41540	33.094	139	91	2	70	207	133	270	7.55e-15	78.6
MS.gene77421.t1	AT1G69550	36.404	228	112	7	178	377	593	815	2.48e-24	108
MS.gene77421.t1	AT5G41750	38.235	170	96	5	176	339	523	689	4.03e-24	107
MS.gene77421.t1	AT5G41750	34.722	144	79	3	74	209	139	275	5.60e-14	75.9
MS.gene77421.t1	AT5G41750	38.235	170	96	5	176	339	523	689	4.03e-24	107

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Find 108 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAACTGTCATATT+CGG	0.399725	5.1:-30484651	None:intergenic
AAAAGCAAGGTTTAAAATCA+AGG	0.407752	5.1:+30487053	MS.gene77421:CDS
AAAATATCTGCTAATTTGTC+AGG	0.356204	5.1:+30484039	MS.gene77421:CDS
AAAGCAGCAACTACAAGGAG+GGG	0.595003	5.1:-30483311	None:intergenic
AAAGCTTTGGTGTGGAGTGC+AGG	0.532118	5.1:+30485895	MS.gene77421:CDS
AACAGTTGCTGAACAATTCA+AGG	0.377803	5.1:+30486615	MS.gene77421:CDS
AACGCAATATTTATGAGAGA+AGG	0.497881	5.1:-30486685	None:intergenic
AAGCAGCAACTACAAGGAGG+GGG	0.621752	5.1:-30483310	None:intergenic
AAGCAGTGTGTGTGTATCCT+GGG	0.565992	5.1:+30486755	MS.gene77421:CDS
AAGCATCCAGTAAACTCAAT+AGG	0.431389	5.1:+30484485	MS.gene77421:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACGCAATATTTATGAGAGA+AGG	-	chr5.1:30486688-30486707	None:intergenic	30.0%
AAGATCCAATGTTGAGATAA+TGG	-	chr5.1:30486232-30486251	None:intergenic	30.0%
AATCAGGTGGAAAAGTTATT+TGG	+	chr5.1:30484858-30484877	MS.gene77421:intron	30.0%
ACATCATGAACTTCTTGAAT+TGG	-	chr5.1:30485194-30485213	None:intergenic	30.0%
AGTGAAATGATAACAAGACA+TGG	+	chr5.1:30484686-30484705	MS.gene77421:intron	30.0%
ATAAAACAAAGCCCATCAAA+GGG	-	chr5.1:30486858-30486877	None:intergenic	30.0%
ATAATAAAGCAGCAACTACA+AGG	-	chr5.1:30483319-30483338	None:intergenic	30.0%
ATCATCATCATCAACTTCAT+TGG	-	chr5.1:30484952-30484971	None:intergenic	30.0%
ATGATGATCTATATGAGGTT+AGG	+	chr5.1:30484964-30484983	MS.gene77421:intron	30.0%
ATTAATAGAAGCAGAATCAG+AGG	-	chr5.1:30483435-30483454	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	30483278	30487251	30483278	ID=MS.gene77421
chr5.1	mRNA	30483278	30487251	30483278	ID=MS.gene77421.t1;Parent=MS.gene77421
chr5.1	exon	30483278	30483391	30483278	ID=MS.gene77421.t1.exon1;Parent=MS.gene77421.t1
chr5.1	CDS	30483278	30483391	30483278	ID=cds.MS.gene77421.t1;Parent=MS.gene77421.t1
chr5.1	exon	30483469	30483570	30483469	ID=MS.gene77421.t1.exon2;Parent=MS.gene77421.t1
chr5.1	CDS	30483469	30483570	30483469	ID=cds.MS.gene77421.t1;Parent=MS.gene77421.t1
chr5.1	exon	30484021	30484082	30484021	ID=MS.gene77421.t1.exon3;Parent=MS.gene77421.t1
chr5.1	CDS	30484021	30484082	30484021	ID=cds.MS.gene77421.t1;Parent=MS.gene77421.t1
chr5.1	exon	30484430	30484682	30484430	ID=MS.gene77421.t1.exon4;Parent=MS.gene77421.t1
chr5.1	CDS	30484430	30484682	30484430	ID=cds.MS.gene77421.t1;Parent=MS.gene77421.t1
chr5.1	exon	30485623	30485916	30485623	ID=MS.gene77421.t1.exon5;Parent=MS.gene77421.t1
chr5.1	CDS	30485623	30485916	30485623	ID=cds.MS.gene77421.t1;Parent=MS.gene77421.t1
chr5.1	exon	30486005	30486091	30486005	ID=MS.gene77421.t1.exon6;Parent=MS.gene77421.t1
chr5.1	CDS	30486005	30486091	30486005	ID=cds.MS.gene77421.t1;Parent=MS.gene77421.t1
chr5.1	exon	30486499	30487251	30486499	ID=MS.gene77421.t1.exon7;Parent=MS.gene77421.t1
chr5.1	CDS	30486499	30487251	30486499	ID=cds.MS.gene77421.t1;Parent=MS.gene77421.t1

Gene Sequence

>MS.gene77421

ATGATCCTTTTGGGCTGGATTAATGCTCTCATCCCCCTCCTTGTAGTTGCTGCTTTATTATTTCCCCGTTGTCAAGGAAAACGTGGTGCGGAGCTTGTTATTCCCGAGCTTGAGGTATTAATAATCTTTTATTAGTTTTAAGATCTTATAATTGCCTCTGATTCTGCTTCTATTAATTTATATTTCCTCAGAGACAATACAAGCTTTCTGGAAGTAAGGCATCACCAGATGGAATTGTTGCTGGAACCTCTAACTTTGAAAAGTTGTCATTATGCGACTCTGGTATAAATCATGTATGTGAAATATGTTGTATAAAGAATATAATACGTTTATGTTGTTAATGAGTTGCAGGCTGTACCAGAAAAGGCAATGTCAAACAATGCTCCCGAATCAAAGTATGATGTATTTGTAAGTTTTAGGGGAGAGGACATCCGCCACCGCTTTCTTGGCCATTTGGCTAAGGCATTTCCTCAAAAGCAAATCAATGCTTTTGTTGATGACATTCACTTTTTGAAGCAATTGAAGGATCGTTCATTTCATTGATCATATTCTCTGAAAACTATGCTTCGTCACATTGGTGTTTAGAAGAACTTGTGAAAATAATTGAGTGCAAAGAGAAATATGGACATATTATAATACCTGTTTTCTACGGGGTAGATCCTACTGATGTACGACATCAAAAGAAGAGTTATGAAAGTGCATTTTCTGAACTTGAAAAAAGGTATAATTCATCTGAGGTGCAGATATGGAGACGTGCTTTGAAAATATCTGCTAATTTGTCAGGAATTGTATCATTAAGTTTTCGGTAAGTTCTTTCCACCCATATATATTATGCATTTCAACATTTTCATGGTGGTTAATTAGTAAAAACACAACTTTTATTTTCCATATATGTTTTACAAGAATGCCTGCATATTGATTTATTAGCTTTACTTCTATATATACCAGTAAATGCTGTAGCTTTTTCATAGAGGGGTTAGATCAATCAAGGCATTGTTTGCTGGTTTACTTAATTTATTGGTTAAATTAGACCCAATTAATACAATTTGATAGTATATTATAATTTGCAAATGATATATAAAAATGACACTATATTATGACTTCTGGGTACATCCATTTAATTTCATTCATCATTCACTCTTTGATGTATAGGAATGACGCTGAGTTGCTTGAAGAAATCATCAGACATGTGTTGATGAGTTTGAGTAAGCATCCAGTAAACTCAATAGGACTTGTTGGAATTGACAAATCAATTTCACATTTGGATTCATTGTTACAAAAAGAGTCAAAAAAGGTCCGTGTCATTGGAATTTGGGGTATGGGAGGTATTGGCAAGACAACTATTGCAGAAGAAATATTTAGCCCAAATTATTCCGAATATGACAGTTCTTGTTTTTTGGCAAAGGTGAGTGAAATGATAACAAGACATGGAATCGAATATTTAAAAAAAAAAAAAACTTTTTTCTAAACTATTGTCCGAAGATGTGAACATTGATACACCAAATAGGCTGTCCAGTGATATTGAGAGACGGATTGGCCGCATGAAGGTTCTTATCGTACTTGATGATGTCAAAGATACAAATCAGGTGGAAAAGTTATTTGGAACTCTTAATTGGTTTCGATCAGATAGTAGAATGATTGTAACAACCAGGGATAAGCAGGTACTTATTGCCAATGAAGTTGATGATGATGATCTATATGAGGTTAGGTTATTGGATTCCAGTGAAGCACTTGCGCTTTTCAATTTGAATGCCTTTAAACAAAGTCATCTTGAAACTGAGTTTGATGATGTATCAAAGAGGGTGGTCAATCATACAAAAGGAATTCCATTAGTTCTTAAAGTTTTGGCTCATATGCTTCGTGGAAAAACTAAAGAGGTATGGGAAAGTCAGCTAGACAAACTTAAAAGACTGCCAATTCAAGAAGTTCATGATGTAATGAGACTCAGTTATGATGATCTTGATCGTTTAGAGAAAAAGTATTTTTTAGATATTGCATGTTTCTTCAATGGGTTGAATTTGAAAGTGGATTACATGAAACTTTTATTAAAAGATTATGAACGTGATAATTCAGTGGCCGTTGGGATAGAAAGGTTGAGAGATAAAAGCTCTCATAACTATTTCTGAAGATAATGTTATATCTATGCATGACATTCTTCAAGAAATGGGTCGGGAGGTTGTTCGCCAAGAATGTAGTGAAGACCTTAGAAAATGCAGTCGATTATGGGATCCTACTATCATTTGTGATGTATTGAAAAATGGAAAGGTAAAAATTTATGGCATTCTTAGATAACATTTTTCATTTGTGGTTAAAAATTTATGGCCTTTCTTTAACATCTATGGCAGGGTACTGAGGCTATTAGAAGCATTAGTTTAGAATTGTCAGCATTTAGGGAGCTGGAGTTAAGCCCTCGTGTATTTGCTAAGATGACCAACATGAAATTTTTGGATATTCGTGATCACAGTCAAAACTATTTGGTTCTTTTTCCTCAAGAGCTTCAATCTTTTCCACCTGATCTAAGATACATTCATTGGATAGATTACCCTTTAATATCATTCCCAGAGAAGTTTTCTGCAGAGAATCTTGTTATATTGGATTTGTCAGGTAGCCTAGTGGAAAAGCTTTGGTGTGGAGTGCAGGTATATGAATATGTGTCTTCATAAAATTTATCTTAATTCAAGGAATTTCAAATTAATTATGTAAGAATATTTTTTATTTTGGTAACAGGATCTAGTTAATTTAAAAGAAGTTACTCTCTCTCGATCAGAATTCTTGAAAGAGTTACCCGACTTTTCGAAAGCCACAAATCTTACGGTATTGAATATGACACATTGTTATAACTTAAGAAGCATCCATCCATCTATTTTCTCTCTTCACAAGCTTGTGCATTTGGACCTAAGTTTTTGCTTTTCCCTTAAAACATTTACAAGCAATTCCAATTTAAGTTCCCTCCATTATCTCAACATTGGATCTTGCAGAAGACTTAGTAAATTCTCAGCGACTTTTGGATGTCAAAGCAAGCTAGAAGTCCTGGTTTTAAGAGCCACTCAAATTGAGAGCATACCTTCAAGCATCAAGAATCATACAAGACTAAGAAAATTAGACATACGAGATTGCTTGAAGTTTCTGGCTCTACCCGAGATTCCTTCATCAATTGAAACCCTACTTTTAAGTGGTAGTGGAATTGAGATCATACCTTCAAGCATCCAAAATCTTACTAGACTAAGATTACTAGCATAAAATTTTGCTCCAAGTTTCTAGCTCTACCCGTGCTTCCTTCATCACTTGAAACTTTACTTGTTGAATGTGAATCACTGAAGACTGTATTGTTCCCTTCAACAGTTGCTGAACAATTCAAGGAAAACAAGAAAAGGATTGAGTTCTGGAATTGTGGAAACTTGGATGAACCTTCTCTCATAAATATTGCGTTGAATGTTCAAATCAATTTAATGAAGTTTGCCAATGTTGGTTCTGATCAAGCAGTGTGTGTGTATCCTGGGAGTAGTGTTCCAGAGTGGTTCGAGTACAAGACAACAGAGGATGATATGATTATTGATCTCTGTCCGCCTCATCTCTCCCCTTTGATGGGCTTTGTTTTATGCTTTGTTTTTGCTAAGGGTTTCAAATGTTATTTCCAAATTGAATTGAAAATCACTATAATTGAGGGTGACGTTGAAAAGGATGGTGTCGAATTCTACATGCATGGGCCATCATATCTTTTTTCAGATCACGTGTGTATGGTTTACGACCAACCATGTTCTCAGTACCTAACTAGAAAAGCAAGGTTTAAAATCAAGGTTACAGCAAGGACAGTATTCCGTTCCATCAAGGTGAAGTTAAAAGGGTTTGGCATCAGCCCCATAAACCACTCAACATATCAAAATCTCATTCAACAAATTGAATATGACTGTGCTGTAGGTGAGAGGAACAATGGAAATAAAAGAAAAAAAAAGGTGCGACAAAACAAAGTGTGA

Protein sequence

>MS.gene77421.t1

MILLGWINALIPLLVVAALLFPRCQGKRGAELVIPELERQYKLSGSKASPDGIVAGTSNFEKLSLCDSGINHIWRRALKISANLSGIVSLSFRNDAELLEEIIRHVLMSLSKHPVNSIGLVGIDKSISHLDSLLQKESKKVRVIGIWGMGGIGKTTIAEEIFSPNYSEYDSSCFLAKGTEAIRSISLELSAFRELELSPRVFAKMTNMKFLDIRDHSQNYLVLFPQELQSFPPDLRYIHWIDYPLISFPEKFSAENLVILDLSGSLVEKLWCGVQDLVNLKEVTLSRSEFLKELPDFSKATNLTTKITSIKFCSKFLALPVLPSSLETLLVECESLKTVLFPSTVAEQFKENKKRIEFWNCGNLDEPSLINIALNVQINLMKFANVGSDQAVCVYPGSSVPEWFEYKTTEDDMIIDLCPPHLSPLMGFVLCFVFAKGFKCYFQIELKITIIEGDVEKDGVEFYMHGPSYLFSDHVCMVYDQPCSQYLTRKARFKIKVTARTVFRSIKVKLKGFGISPINHSTYQNLIQQIEYDCAVGERNNGNKRKKKVRQNKV