Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060126.t1 | XP_013458592.1 | 97.7 | 129 | 3 | 0 | 19 | 147 | 31 | 159 | 5.60E-65 | 256.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060126.t1 | Q945F4 | 97.7 | 129 | 3 | 0 | 19 | 147 | 31 | 159 | 1.4e-67 | 256.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060126.t1 | B7FGR9 | 97.7 | 129 | 3 | 0 | 19 | 147 | 31 | 159 | 4.1e-65 | 256.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051903 | MS.gene060126 | 0.803613 | 3.21E-49 | -1.69E-46 |
| MS.gene060126 | MS.gene09056 | 0.814913 | 1.21E-51 | -1.69E-46 |
| MS.gene060126 | MS.gene21636 | 0.810784 | 9.70E-51 | -1.69E-46 |
| MS.gene060126 | MS.gene41901 | 0.801186 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060126.t1 | MTR_4g130917 | 96.183 | 131 | 5 | 0 | 17 | 147 | 29 | 159 | 5.77e-89 | 256 |
| MS.gene060126.t1 | MTR_4g109130 | 90.840 | 131 | 12 | 0 | 17 | 147 | 29 | 159 | 5.30e-84 | 243 |
| MS.gene060126.t1 | MTR_3g437680 | 88.550 | 131 | 15 | 0 | 17 | 147 | 29 | 159 | 4.35e-82 | 238 |
| MS.gene060126.t1 | MTR_3g437680 | 88.550 | 131 | 15 | 0 | 17 | 147 | 29 | 159 | 4.35e-82 | 238 |
| MS.gene060126.t1 | MTR_5g042990 | 85.496 | 131 | 19 | 0 | 17 | 147 | 29 | 159 | 8.21e-81 | 235 |
| MS.gene060126.t1 | MTR_4g130917 | 95.876 | 97 | 4 | 0 | 19 | 115 | 31 | 127 | 9.75e-64 | 192 |
| MS.gene060126.t1 | MTR_5g042990 | 83.838 | 99 | 16 | 0 | 17 | 115 | 29 | 127 | 1.17e-57 | 176 |
| MS.gene060126.t1 | MTR_5g042990 | 83.838 | 99 | 16 | 0 | 17 | 115 | 29 | 127 | 1.89e-57 | 176 |
| MS.gene060126.t1 | MTR_4g109130 | 88.312 | 77 | 9 | 0 | 17 | 93 | 29 | 105 | 4.69e-45 | 144 |
| MS.gene060126.t1 | MTR_4g112440 | 66.667 | 72 | 14 | 1 | 19 | 90 | 31 | 92 | 9.66e-28 | 99.0 |
| MS.gene060126.t1 | MTR_4g130907 | 42.105 | 133 | 29 | 2 | 1 | 133 | 37 | 121 | 3.22e-19 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060126.t1 | AT1G13950 | 88.550 | 131 | 15 | 0 | 17 | 147 | 28 | 158 | 8.88e-81 | 235 |
| MS.gene060126.t1 | AT1G69410 | 84.733 | 131 | 20 | 0 | 17 | 147 | 28 | 158 | 5.66e-80 | 233 |
| MS.gene060126.t1 | AT1G26630 | 79.845 | 129 | 26 | 0 | 17 | 145 | 28 | 156 | 1.90e-73 | 217 |
| MS.gene060126.t1 | AT1G26630 | 82.828 | 99 | 17 | 0 | 17 | 115 | 28 | 126 | 8.24e-56 | 171 |
Find 30 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCTGTTGAGGGTAGGTTT+TGG | 0.330390 | 8.4:+3072672 | None:intergenic |
| AGGAAGCTTCAGATCATCTT+TGG | 0.330486 | 8.4:+3070693 | None:intergenic |
| ACTTAGGACCAATGTCCTTC+AGG | 0.343359 | 8.4:+3070485 | None:intergenic |
| TTGAATGATATTTCTGAAGA+TGG | 0.371340 | 8.4:-3071570 | MS.gene060126:CDS |
| GCAGAAAACCTTGCAAGGCC+TGG | 0.423629 | 8.4:+3072611 | None:intergenic |
| ATCCAAAACCTACCCTCAAC+AGG | 0.440341 | 8.4:-3072674 | MS.gene060126:CDS |
| ATACATTCATAGATTAAAGA+TGG | 0.442913 | 8.4:-3070574 | MS.gene060126:intron |
| GCTGGTACTATTCGCAAGAA+TGG | 0.453433 | 8.4:-3072652 | MS.gene060126:CDS |
| CTTAGGACCAATGTCCTTCA+GGG | 0.484561 | 8.4:+3070486 | None:intergenic |
| ATTAAAGATGGATTTGCTGA+TGG | 0.488295 | 8.4:-3070562 | MS.gene060126:CDS |
| GAATAGTACCAGCCTGTTGA+GGG | 0.502881 | 8.4:+3072662 | None:intergenic |
| CTGGTACTATTCGCAAGAAT+GGG | 0.503080 | 8.4:-3072651 | MS.gene060126:CDS |
| GGTTTCTGTTATGTCTGCGA+TGG | 0.503255 | 8.4:-3070527 | MS.gene060126:CDS |
| ACATCACAATTGTGGGATGA+AGG | 0.511953 | 8.4:+3071699 | None:intergenic |
| CTAACTTACATCACAATTGT+GGG | 0.513530 | 8.4:+3071692 | None:intergenic |
| TCTAACTTACATCACAATTG+TGG | 0.519354 | 8.4:+3071691 | None:intergenic |
| CATCAAGTCCAGGCCTTGCA+AGG | 0.525229 | 8.4:-3072619 | MS.gene060126:intron |
| CGAATAGTACCAGCCTGTTG+AGG | 0.540601 | 8.4:+3072661 | None:intergenic |
| GTTTCTGTTATGTCTGCGAT+GGG | 0.555762 | 8.4:-3070526 | MS.gene060126:CDS |
| AAAACCTACCCTCAACAGGC+TGG | 0.584266 | 8.4:-3072670 | MS.gene060126:CDS |
| AGAGCAGATATGTGCCCTGA+AGG | 0.589389 | 8.4:-3070500 | MS.gene060126:CDS |
| TGCTGATGGAAAAGATCTCG+TGG | 0.593109 | 8.4:-3070548 | MS.gene060126:CDS |
| GAAAAGCAGAAAACCTTGCA+AGG | 0.593565 | 8.4:+3072606 | None:intergenic |
| ATATGTGCCCTGAAGGACAT+TGG | 0.593679 | 8.4:-3070493 | MS.gene060126:CDS |
| TGATGATTCACTACTTACTC+AGG | 0.602143 | 8.4:-3070668 | MS.gene060126:intron |
| GTAAGTAGTGAATCATCAGT+AGG | 0.605999 | 8.4:+3070673 | None:intergenic |
| AGTACCAGCCTGTTGAGGGT+AGG | 0.611010 | 8.4:+3072666 | None:intergenic |
| GTTACATAGTCATCAAGTCC+AGG | 0.614127 | 8.4:-3072629 | MS.gene060126:CDS |
| GTGAGTTTGTTGACTGACAA+TGG | 0.614472 | 8.4:-3070721 | MS.gene060126:CDS |
| TAATCAGTACGATTCACATG+AGG | 0.718954 | 8.4:+3071597 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATTGAGAAACAAATA+CGG | + | chr8.4:3071339-3071358 | None:intergenic | 15.0% |
| !! | ATTAAGTTAAAACTTTCAAA+TGG | - | chr8.4:3071667-3071686 | MS.gene060126:intron | 15.0% |
| !! | GATATATAAAAATGAGAATT+AGG | - | chr8.4:3071689-3071708 | MS.gene060126:intron | 15.0% |
| !!! | ATTTGTTTCTCAATATATTT+TGG | - | chr8.4:3071340-3071359 | MS.gene060126:intron | 15.0% |
| !!! | TTTGAAACAATTTTTAAAGA+TGG | - | chr8.4:3071130-3071149 | MS.gene060126:intron | 15.0% |
| !!! | TTTGATTTGATTGTTTTAAA+CGG | - | chr8.4:3070794-3070813 | MS.gene060126:intron | 15.0% |
| !!! | TTTTATAAACTTGATATAAC+TGG | - | chr8.4:3071191-3071210 | MS.gene060126:intron | 15.0% |
| !! | AAAAATTGTTTCAAAACCTA+GGG | + | chr8.4:3071125-3071144 | None:intergenic | 20.0% |
| !! | AAAGAGACAAAATATATATG+TGG | + | chr8.4:3072558-3072577 | None:intergenic | 20.0% |
| !! | AAATATTATAGTCATTCCTT+TGG | + | chr8.4:3071891-3071910 | None:intergenic | 20.0% |
| !! | AAGTAAAAATAAGATGACAT+AGG | - | chr8.4:3072225-3072244 | MS.gene060126:intron | 20.0% |
| !! | AGTAAAAATAAGATGACATA+GGG | - | chr8.4:3072226-3072245 | MS.gene060126:intron | 20.0% |
| !! | ATAAAAATTGGAACATGATT+TGG | - | chr8.4:3070762-3070781 | MS.gene060126:intron | 20.0% |
| !! | ATACATTCATAGATTAAAGA+TGG | - | chr8.4:3072593-3072612 | MS.gene060126:intron | 20.0% |
| !! | TAAAAATTGTTTCAAAACCT+AGG | + | chr8.4:3071126-3071145 | None:intergenic | 20.0% |
| !! | TCAAAAAATACAATCTAGAA+GGG | + | chr8.4:3070593-3070612 | None:intergenic | 20.0% |
| !! | TGTATCTTAATGTCTATTAA+GGG | - | chr8.4:3071740-3071759 | MS.gene060126:CDS | 20.0% |
| !! | TGTTTGAATCGAATAAAAAT+TGG | - | chr8.4:3070750-3070769 | MS.gene060126:intron | 20.0% |
| !! | TTCAAAAAATACAATCTAGA+AGG | + | chr8.4:3070594-3070613 | None:intergenic | 20.0% |
| !! | TTGTATCTTAATGTCTATTA+AGG | - | chr8.4:3071739-3071758 | MS.gene060126:CDS | 20.0% |
| !! | TTTAGTGTAATTATAAGTGT+CGG | - | chr8.4:3072119-3072138 | MS.gene060126:intron | 20.0% |
| !! | TTTATATAGATGAGTTACAT+GGG | - | chr8.4:3071712-3071731 | MS.gene060126:CDS | 20.0% |
| !!! | ATAAAACATACTCAGTTTTT+AGG | + | chr8.4:3071784-3071803 | None:intergenic | 20.0% |
| !!! | GTCTCTTTAATTTGATTTAT+TGG | - | chr8.4:3072570-3072589 | MS.gene060126:intron | 20.0% |
| !!! | TTGCTATTGATATTTTCAAT+GGG | - | chr8.4:3071424-3071443 | MS.gene060126:intron | 20.0% |
| !!! | TTTACATTATGTTTTATGTC+AGG | - | chr8.4:3071921-3071940 | MS.gene060126:intron | 20.0% |
| ! | AATTCCTTATTCGATTAATC+TGG | - | chr8.4:3070612-3070631 | MS.gene060126:intron | 25.0% |
| ! | CAAAAAATACAATCTAGAAG+GGG | + | chr8.4:3070592-3070611 | None:intergenic | 25.0% |
| ! | GTTTATATAGATGAGTTACA+TGG | - | chr8.4:3071711-3071730 | MS.gene060126:CDS | 25.0% |
| ! | TTAACATGCTTCTGTTTATA+TGG | - | chr8.4:3070698-3070717 | MS.gene060126:CDS | 25.0% |
| ! | TTATATAGATGAGTTACATG+GGG | - | chr8.4:3071713-3071732 | MS.gene060126:CDS | 25.0% |
| ! | TTCTTCATGTTAGGAAAATA+TGG | + | chr8.4:3071977-3071996 | None:intergenic | 25.0% |
| ! | TTTACATCTAGATCTAACAT+TGG | - | chr8.4:3070839-3070858 | MS.gene060126:intron | 25.0% |
| !! | AAGTTAATCTCTTTTCAACA+TGG | + | chr8.4:3070898-3070917 | None:intergenic | 25.0% |
| !! | ACTTGTTTGTATTCACATTT+TGG | + | chr8.4:3072342-3072361 | None:intergenic | 25.0% |
| !! | TATTTGACTTTCTTCATGTT+AGG | + | chr8.4:3071986-3072005 | None:intergenic | 25.0% |
| !! | TTCACAGTAAATTTTACCAA+AGG | - | chr8.4:3071872-3071891 | MS.gene060126:intron | 25.0% |
| !! | TTGAATGATATTTCTGAAGA+TGG | - | chr8.4:3071597-3071616 | MS.gene060126:CDS | 25.0% |
| !!! | AATTGTGCTAACTTGTTTAT+TGG | - | chr8.4:3071310-3071329 | MS.gene060126:intron | 25.0% |
| !!! | ATTGTGCTAACTTGTTTATT+GGG | - | chr8.4:3071311-3071330 | MS.gene060126:intron | 25.0% |
| !!! | GTTGCTATTGATATTTTCAA+TGG | - | chr8.4:3071423-3071442 | MS.gene060126:intron | 25.0% |
| !!! | GTTTCTCAATATATTTTGGT+AGG | - | chr8.4:3071344-3071363 | MS.gene060126:intron | 25.0% |
| ACTTCAAAAAACAGGAAACA+TGG | - | chr8.4:3071381-3071400 | MS.gene060126:intron | 30.0% | |
| AGGTTTCTACTTCAAAAAAC+AGG | - | chr8.4:3071373-3071392 | MS.gene060126:intron | 30.0% | |
| CAAATTAAGTCAATCCAAAC+AGG | - | chr8.4:3071099-3071118 | MS.gene060126:intron | 30.0% | |
| CCTAAACAAAACATTCATGT+AGG | + | chr8.4:3072427-3072446 | None:intergenic | 30.0% | |
| CTAACTTACATCACAATTGT+GGG | + | chr8.4:3071478-3071497 | None:intergenic | 30.0% | |
| GATTCCAGATTAATCGAATA+AGG | + | chr8.4:3070619-3070638 | None:intergenic | 30.0% | |
| TAATGTCTATTAAGGGATGA+GGG | - | chr8.4:3071747-3071766 | MS.gene060126:CDS | 30.0% | |
| TAGTTGACATTCTTCATGTT+AGG | + | chr8.4:3071851-3071870 | None:intergenic | 30.0% | |
| TATATAGATGAGTTACATGG+GGG | - | chr8.4:3071714-3071733 | MS.gene060126:CDS | 30.0% | |
| TCTAACTTACATCACAATTG+TGG | + | chr8.4:3071479-3071498 | None:intergenic | 30.0% | |
| TTAATGTCTATTAAGGGATG+AGG | - | chr8.4:3071746-3071765 | MS.gene060126:CDS | 30.0% | |
| TTACTTGTGACAACTTTAGT+AGG | - | chr8.4:3071638-3071657 | MS.gene060126:intron | 30.0% | |
| TTCTTCATGTTAGGAAAACA+AGG | + | chr8.4:3071842-3071861 | None:intergenic | 30.0% | |
| ! | CTGTTTATATGGTGTGATTT+TGG | - | chr8.4:3070709-3070728 | MS.gene060126:CDS | 30.0% |
| !! | ATTAAAGATGGATTTGCTGA+TGG | - | chr8.4:3072605-3072624 | MS.gene060126:intron | 30.0% |
| !!! | ATTTTGGTTGATTGGTAACT+GGG | - | chr8.4:3070725-3070744 | MS.gene060126:intron | 30.0% |
| !!! | CCTACATGAATGTTTTGTTT+AGG | - | chr8.4:3072424-3072443 | MS.gene060126:intron | 30.0% |
| !!! | TATATTTTGGTAGGTTGTTG+AGG | - | chr8.4:3071353-3071372 | MS.gene060126:intron | 30.0% |
| AATACAATCTAGAAGGGGAA+AGG | + | chr8.4:3070587-3070606 | None:intergenic | 35.0% | |
| ACAAGTGCACAACAAGAAAA+AGG | - | chr8.4:3072356-3072375 | MS.gene060126:intron | 35.0% | |
| ATACAATCTAGAAGGGGAAA+GGG | + | chr8.4:3070586-3070605 | None:intergenic | 35.0% | |
| CAAGTGCACAACAAGAAAAA+GGG | - | chr8.4:3072357-3072376 | MS.gene060126:intron | 35.0% | |
| GTAAGTAGTGAATCATCAGT+AGG | + | chr8.4:3072497-3072516 | None:intergenic | 35.0% | |
| TAAACGGAGACATAGACATA+TGG | - | chr8.4:3070810-3070829 | MS.gene060126:intron | 35.0% | |
| TAATCAGTACGATTCACATG+AGG | + | chr8.4:3071573-3071592 | None:intergenic | 35.0% | |
| TCACTACTTACTCAGGTATT+GGG | - | chr8.4:3072506-3072525 | MS.gene060126:intron | 35.0% | |
| TGATGATTCACTACTTACTC+AGG | - | chr8.4:3072499-3072518 | MS.gene060126:intron | 35.0% | |
| TTATGCTATTGTCATTGCAG+TGG | - | chr8.4:3072388-3072407 | MS.gene060126:intron | 35.0% | |
| TTCACTACTTACTCAGGTAT+TGG | - | chr8.4:3072505-3072524 | MS.gene060126:intron | 35.0% | |
| TTGTGACAACTTTAGTAGGT+GGG | - | chr8.4:3071642-3071661 | MS.gene060126:intron | 35.0% | |
| !! | AGTGTAATTATAAGTGTCGG+TGG | - | chr8.4:3072122-3072141 | MS.gene060126:intron | 35.0% |
| !! | GAGTTTACAACTTTGAAGCA+TGG | + | chr8.4:3072170-3072189 | None:intergenic | 35.0% |
| !!! | ATGGTGTGATTTTGGTTGAT+TGG | - | chr8.4:3070717-3070736 | MS.gene060126:CDS | 35.0% |
| !!! | CATACTCAGTTTTTAGGACA+TGG | + | chr8.4:3071778-3071797 | None:intergenic | 35.0% |
| !!! | GATTTTGGTTGATTGGTAAC+TGG | - | chr8.4:3070724-3070743 | MS.gene060126:CDS | 35.0% |
| ACATCACAATTGTGGGATGA+AGG | + | chr8.4:3071471-3071490 | None:intergenic | 40.0% | |
| AGGAAGCTTCAGATCATCTT+TGG | + | chr8.4:3072477-3072496 | None:intergenic | 40.0% | |
| ATCATCTTTGCTCTCTTTGC+AGG | - | chr8.4:3071545-3071564 | MS.gene060126:intron | 40.0% | |
| ATCCCTATATCCTTGACAAC+AGG | - | chr8.4:3071231-3071250 | MS.gene060126:intron | 40.0% | |
| CTGGTACTATTCGCAAGAAT+GGG | - | chr8.4:3070516-3070535 | MS.gene060126:CDS | 40.0% | |
| CTTGTGACAACTTTAGTAGG+TGG | - | chr8.4:3071641-3071660 | MS.gene060126:intron | 40.0% | |
| GAAAAGCAGAAAACCTTGCA+AGG | + | chr8.4:3070564-3070583 | None:intergenic | 40.0% | |
| GTTACATAGTCATCAAGTCC+AGG | - | chr8.4:3070538-3070557 | MS.gene060126:CDS | 40.0% | |
| GTTTCTGTTATGTCTGCGAT+GGG | - | chr8.4:3072641-3072660 | MS.gene060126:CDS | 40.0% | |
| TCCCTATATCCTTGACAACA+GGG | - | chr8.4:3071232-3071251 | MS.gene060126:intron | 40.0% | |
| TCCCTGTTGTCAAGGATATA+GGG | + | chr8.4:3071236-3071255 | None:intergenic | 40.0% | |
| TGCTGTAAACCTATGAAGCA+CGG | - | chr8.4:3072041-3072060 | MS.gene060126:intron | 40.0% | |
| !! | GTGAGTTTGTTGACTGACAA+TGG | - | chr8.4:3072446-3072465 | MS.gene060126:intron | 40.0% |
| ACTTAGGACCAATGTCCTTC+AGG | + | chr8.4:3072685-3072704 | None:intergenic | 45.0% | |
| ATATGTGCCCTGAAGGACAT+TGG | - | chr8.4:3072674-3072693 | MS.gene060126:CDS | 45.0% | |
| ATCCAAAACCTACCCTCAAC+AGG | - | chr8.4:3070493-3070512 | MS.gene060126:CDS | 45.0% | |
| ATCCTTGACAACAGGGACAT+TGG | - | chr8.4:3071239-3071258 | MS.gene060126:intron | 45.0% | |
| CGACATCGTTAGGATGAGTT+AGG | - | chr8.4:3071162-3071181 | MS.gene060126:intron | 45.0% | |
| CTTAGGACCAATGTCCTTCA+GGG | + | chr8.4:3072684-3072703 | None:intergenic | 45.0% | |
| GAATAGTACCAGCCTGTTGA+GGG | + | chr8.4:3070508-3070527 | None:intergenic | 45.0% | |
| GCTGGTACTATTCGCAAGAA+TGG | - | chr8.4:3070515-3070534 | MS.gene060126:CDS | 45.0% | |
| GGTTTCTGTTATGTCTGCGA+TGG | - | chr8.4:3072640-3072659 | MS.gene060126:CDS | 45.0% | |
| GTCCCTGTTGTCAAGGATAT+AGG | + | chr8.4:3071237-3071256 | None:intergenic | 45.0% | |
| TGCTGATGGAAAAGATCTCG+TGG | - | chr8.4:3072619-3072638 | MS.gene060126:intron | 45.0% | |
| TGTCTGTATCCGTGCTTCAT+AGG | + | chr8.4:3072053-3072072 | None:intergenic | 45.0% | |
| TTCAAAACCTAGGGCCTGTT+TGG | + | chr8.4:3071116-3071135 | None:intergenic | 45.0% | |
| TTCCAATGTCCCTGTTGTCA+AGG | + | chr8.4:3071244-3071263 | None:intergenic | 45.0% | |
| !! | ATAAGTGTCGGTGGTTGTGT+CGG | - | chr8.4:3072131-3072150 | MS.gene060126:intron | 45.0% |
| AAAACCTACCCTCAACAGGC+TGG | - | chr8.4:3070497-3070516 | MS.gene060126:CDS | 50.0% | |
| AGAGCAGATATGTGCCCTGA+AGG | - | chr8.4:3072667-3072686 | MS.gene060126:CDS | 50.0% | |
| AGTCAATCCAAACAGGCCCT+AGG | - | chr8.4:3071106-3071125 | MS.gene060126:intron | 50.0% | |
| AGTTATGCAGTGTCCGTGTC+CGG | + | chr8.4:3072076-3072095 | None:intergenic | 50.0% | |
| CGAATAGTACCAGCCTGTTG+AGG | + | chr8.4:3070509-3070528 | None:intergenic | 50.0% | |
| GACACGTAGTCGACATCGTT+AGG | - | chr8.4:3071152-3071171 | MS.gene060126:intron | 50.0% | |
| TGAAGCACGGATACAGACAC+CGG | - | chr8.4:3072054-3072073 | MS.gene060126:intron | 50.0% | |
| ! | AGCCTGTTGAGGGTAGGTTT+TGG | + | chr8.4:3070498-3070517 | None:intergenic | 50.0% |
| !!! | AGGGTAGGTTTTGGATGCTC+CGG | + | chr8.4:3070489-3070508 | None:intergenic | 50.0% |
| ACGGATACAGACACCGGACA+CGG | - | chr8.4:3072060-3072079 | MS.gene060126:intron | 55.0% | |
| AGTACCAGCCTGTTGAGGGT+AGG | + | chr8.4:3070504-3070523 | None:intergenic | 55.0% | |
| CATCAAGTCCAGGCCTTGCA+AGG | - | chr8.4:3070548-3070567 | MS.gene060126:CDS | 55.0% | |
| GCAGAAAACCTTGCAAGGCC+TGG | + | chr8.4:3070559-3070578 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 3070483 | 3072706 | 3070483 | ID=MS.gene060126 |
| chr8.4 | mRNA | 3070483 | 3072706 | 3070483 | ID=MS.gene060126.t1;Parent=MS.gene060126 |
| chr8.4 | exon | 3072620 | 3072706 | 3072620 | ID=MS.gene060126.t1.exon1;Parent=MS.gene060126.t1 |
| chr8.4 | CDS | 3072620 | 3072706 | 3072620 | ID=cds.MS.gene060126.t1;Parent=MS.gene060126.t1 |
| chr8.4 | exon | 3071701 | 3071823 | 3071701 | ID=MS.gene060126.t1.exon2;Parent=MS.gene060126.t1 |
| chr8.4 | CDS | 3071701 | 3071823 | 3071701 | ID=cds.MS.gene060126.t1;Parent=MS.gene060126.t1 |
| chr8.4 | exon | 3071566 | 3071622 | 3071566 | ID=MS.gene060126.t1.exon3;Parent=MS.gene060126.t1 |
| chr8.4 | CDS | 3071566 | 3071622 | 3071566 | ID=cds.MS.gene060126.t1;Parent=MS.gene060126.t1 |
| chr8.4 | exon | 3070669 | 3070743 | 3070669 | ID=MS.gene060126.t1.exon4;Parent=MS.gene060126.t1 |
| chr8.4 | CDS | 3070669 | 3070743 | 3070669 | ID=cds.MS.gene060126.t1;Parent=MS.gene060126.t1 |
| chr8.4 | exon | 3070483 | 3070584 | 3070483 | ID=MS.gene060126.t1.exon5;Parent=MS.gene060126.t1 |
| chr8.4 | CDS | 3070483 | 3070584 | 3070483 | ID=cds.MS.gene060126.t1;Parent=MS.gene060126.t1 |
| Gene Sequence |
| Protein sequence |
