Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41901.t1 | XP_003624883.1 | 100 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 2.70E-73 | 285 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41901.t1 | Q9M612 | 81.4 | 199 | 30 | 3 | 6 | 202 | 11 | 204 | 6.5e-52 | 205.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41901.t1 | G7L4T7 | 100.0 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.9e-73 | 285.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene41901 | 0.803581 | 3.26E-49 | -1.69E-46 |
| MS.gene050290 | MS.gene41901 | 0.824022 | 1.01E-53 | -1.69E-46 |
| MS.gene050320 | MS.gene41901 | 0.823562 | 1.30E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene41901 | 0.800318 | 1.52E-48 | -1.69E-46 |
| MS.gene050838 | MS.gene41901 | 0.821954 | 3.07E-53 | -1.69E-46 |
| MS.gene050916 | MS.gene41901 | 0.804453 | 2.14E-49 | -1.69E-46 |
| MS.gene051330 | MS.gene41901 | 0.813595 | 2.36E-51 | -1.69E-46 |
| MS.gene051746 | MS.gene41901 | 0.824847 | 6.46E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene41901 | 0.842436 | 2.59E-58 | -1.69E-46 |
| MS.gene051850 | MS.gene41901 | 0.805486 | 1.30E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene41901 | 0.881811 | 1.76E-70 | -1.69E-46 |
| MS.gene052947 | MS.gene41901 | 0.830959 | 2.19E-55 | -1.69E-46 |
| MS.gene053109 | MS.gene41901 | 0.817001 | 4.13E-52 | -1.69E-46 |
| MS.gene053952 | MS.gene41901 | 0.88961 | 2.08E-73 | -1.69E-46 |
| MS.gene054403 | MS.gene41901 | 0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene054937 | MS.gene41901 | 0.854482 | 1.20E-61 | -1.69E-46 |
| MS.gene056075 | MS.gene41901 | 0.836179 | 1.09E-56 | -1.69E-46 |
| MS.gene056631 | MS.gene41901 | 0.819175 | 1.33E-52 | -1.69E-46 |
| MS.gene056896 | MS.gene41901 | 0.835839 | 1.33E-56 | -1.69E-46 |
| MS.gene057052 | MS.gene41901 | 0.828992 | 6.60E-55 | -1.69E-46 |
| MS.gene057094 | MS.gene41901 | 0.895534 | 8.75E-76 | -1.69E-46 |
| MS.gene058238 | MS.gene41901 | 0.801146 | 1.03E-48 | -1.69E-46 |
| MS.gene058364 | MS.gene41901 | 0.85599 | 4.35E-62 | -1.69E-46 |
| MS.gene06001 | MS.gene41901 | 0.856907 | 2.34E-62 | -1.69E-46 |
| MS.gene06011 | MS.gene41901 | 0.801428 | 9.05E-49 | -1.69E-46 |
| MS.gene060126 | MS.gene41901 | 0.801186 | 1.01E-48 | -1.69E-46 |
| MS.gene060574 | MS.gene41901 | 0.805044 | 1.61E-49 | -1.69E-46 |
| MS.gene061145 | MS.gene41901 | 0.814388 | 1.58E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene41901 | MS.gene003688 | PPI |
| MS.gene23317 | MS.gene41901 | PPI |
| MS.gene003685 | MS.gene41901 | PPI |
| MS.gene41901 | MS.gene50742 | PPI |
| MS.gene41901 | MS.gene039827 | PPI |
| MS.gene044693 | MS.gene41901 | PPI |
| MS.gene41901 | MS.gene73089 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41901.t1 | MTR_7g088680 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.72e-146 | 405 |
| MS.gene41901.t1 | MTR_3g092970 | 72.185 | 151 | 36 | 2 | 59 | 203 | 77 | 227 | 1.54e-67 | 206 |
| MS.gene41901.t1 | MTR_3g092980 | 69.333 | 150 | 41 | 2 | 59 | 203 | 69 | 218 | 8.66e-59 | 184 |
| MS.gene41901.t1 | MTR_3g092980 | 69.333 | 150 | 41 | 2 | 59 | 203 | 71 | 220 | 1.02e-58 | 184 |
| MS.gene41901.t1 | MTR_3g093750 | 56.303 | 119 | 41 | 3 | 87 | 203 | 418 | 527 | 1.26e-29 | 114 |
| MS.gene41901.t1 | MTR_1g006975 | 88.636 | 44 | 5 | 0 | 51 | 94 | 1898 | 1941 | 1.15e-16 | 78.2 |
| MS.gene41901.t1 | MTR_3g093720 | 78.571 | 42 | 9 | 0 | 161 | 202 | 215 | 256 | 5.37e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41901.t1 | AT3G12390 | 72.500 | 200 | 52 | 2 | 6 | 203 | 5 | 203 | 1.98e-77 | 231 |
| MS.gene41901.t1 | AT5G13850 | 70.000 | 210 | 50 | 3 | 1 | 203 | 1 | 204 | 1.07e-75 | 226 |
| MS.gene41901.t1 | AT3G49470 | 62.000 | 200 | 64 | 4 | 10 | 203 | 24 | 217 | 2.44e-67 | 206 |
| MS.gene41901.t1 | AT3G49470 | 61.622 | 185 | 60 | 3 | 16 | 194 | 29 | 208 | 1.31e-61 | 192 |
| MS.gene41901.t1 | AT4G10480 | 61.951 | 205 | 65 | 3 | 6 | 202 | 11 | 210 | 3.67e-61 | 190 |
| MS.gene41901.t1 | AT4G10480 | 69.737 | 152 | 36 | 2 | 59 | 202 | 62 | 211 | 6.97e-61 | 189 |
| MS.gene41901.t1 | AT1G33040 | 64.238 | 151 | 48 | 2 | 59 | 203 | 59 | 209 | 6.37e-59 | 184 |
Find 45 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAGCTCTTCTTGGGTT+TGG | 0.250426 | 7.2:-20163830 | None:intergenic |
| TCTGACACCTACATTATATT+CGG | 0.304764 | 7.2:+20165450 | MS.gene41901:CDS |
| TCGTCTACATCCTCATCTTC+TGG | 0.324398 | 7.2:-20165585 | None:intergenic |
| GCACCCGCATTGGTCAAATT+AGG | 0.324435 | 7.2:-20165537 | None:intergenic |
| GAGCAGCAAGAAGCTCTTCT+TGG | 0.330866 | 7.2:-20163836 | None:intergenic |
| AAGAAGCTCTTCTTGGGTTT+GGG | 0.331123 | 7.2:-20163829 | None:intergenic |
| GGAGCAATACCAGAGGATTC+TGG | 0.349709 | 7.2:-20165564 | None:intergenic |
| GCTTTAACAGCTCTTGATCT+TGG | 0.356165 | 7.2:-20165660 | None:intergenic |
| AGACATTGTTGCTGCCATTA+TGG | 0.359211 | 7.2:+20165701 | MS.gene41901:CDS |
| CTTGGAATGAAAGCTGTTAC+TGG | 0.368859 | 7.2:+20165250 | MS.gene41901:CDS |
| GTTGGACTCTTGAAAACATC+TGG | 0.370830 | 7.2:-20165426 | None:intergenic |
| TTCTTGGGTTTGGGCAGTCA+TGG | 0.386669 | 7.2:-20163820 | None:intergenic |
| CGCAAGGCAATGCTTAAACT+TGG | 0.418058 | 7.2:+20165232 | MS.gene41901:CDS |
| CTGACACCTACATTATATTC+GGG | 0.423367 | 7.2:+20165451 | MS.gene41901:CDS |
| TTAATTTGTTAGCTCCATAA+TGG | 0.425574 | 7.2:-20165715 | None:intergenic |
| CACCACCAACTCAATATCCT+TGG | 0.437037 | 7.2:-20165622 | None:intergenic |
| AGCAGCAAGAAGCTCTTCTT+GGG | 0.446621 | 7.2:-20163835 | None:intergenic |
| TTCTGGTTTCGCACCCGCAT+TGG | 0.470492 | 7.2:-20165547 | None:intergenic |
| TCAGGCTGCAGAGCAGTTCA+AGG | 0.470685 | 7.2:+20165512 | MS.gene41901:CDS |
| TCCCAAGGATATTGAGTTGG+TGG | 0.515624 | 7.2:+20165620 | MS.gene41901:CDS |
| GCTCCTAATTTGACCAATGC+GGG | 0.519514 | 7.2:+20165534 | MS.gene41901:CDS |
| ATAATGTAGGTGTCAGAAGT+TGG | 0.520697 | 7.2:-20165444 | None:intergenic |
| TCATCGTCATCCTCAACTAC+AGG | 0.523575 | 7.2:-20164452 | None:intergenic |
| ACCACCAACTCAATATCCTT+GGG | 0.531886 | 7.2:-20165621 | None:intergenic |
| GATGAGGATGTAGACGAGAC+TGG | 0.538671 | 7.2:+20165591 | MS.gene41901:CDS |
| GGATTTGAAGGTGATGCATC+TGG | 0.544074 | 7.2:+20165175 | MS.gene41901:intron |
| GGCAGCAACAATGTCTCCAT+TGG | 0.548006 | 7.2:-20165694 | None:intergenic |
| GAGTTGGTGGTGACTCAAGC+TGG | 0.556994 | 7.2:+20165633 | MS.gene41901:CDS |
| GGTGCGAAACCAGAATCCTC+TGG | 0.566739 | 7.2:+20165555 | MS.gene41901:CDS |
| TGACGAAGACGACGATGATG+AGG | 0.584480 | 7.2:+20164490 | MS.gene41901:CDS |
| GCATGATGAGCCTGTAGTTG+AGG | 0.588135 | 7.2:+20164442 | MS.gene41901:intron |
| AAAGCTCTCAAAGCTGCCAA+TGG | 0.592851 | 7.2:+20165678 | MS.gene41901:CDS |
| GAGCTCACAGCTACAAACTC+AGG | 0.597975 | 7.2:+20165494 | MS.gene41901:CDS |
| CGAGACTGGTGTAGATCCCA+AGG | 0.607645 | 7.2:+20165605 | MS.gene41901:CDS |
| TGGTATTGCTCCAGAAGATG+AGG | 0.607813 | 7.2:+20165575 | MS.gene41901:CDS |
| AGCTTCCCCGAATATAATGT+AGG | 0.614771 | 7.2:-20165457 | None:intergenic |
| AGATCCCAAGGATATTGAGT+TGG | 0.629225 | 7.2:+20165617 | MS.gene41901:CDS |
| TTGAAGGTGATGCATCTGGT+AGG | 0.643359 | 7.2:+20165179 | MS.gene41901:CDS |
| GGCTCCTAATTTGACCAATG+CGG | 0.643666 | 7.2:+20165533 | MS.gene41901:CDS |
| AAGTGAAAAGAAGAGTCGCA+AGG | 0.645070 | 7.2:+20165216 | MS.gene41901:CDS |
| ATCTTCTGGAGCAATACCAG+AGG | 0.670950 | 7.2:-20165571 | None:intergenic |
| TGACACCTACATTATATTCG+GGG | 0.682224 | 7.2:+20165452 | MS.gene41901:CDS |
| TGACGATGATGAGGACGATG+AGG | 0.719627 | 7.2:+20164466 | MS.gene41901:CDS |
| AGTTGAGGATGACGATGATG+AGG | 0.722265 | 7.2:+20164457 | MS.gene41901:CDS |
| GAGGACGATGACAATGCTGA+AGG | 0.723088 | 7.2:+20164509 | MS.gene41901:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAATAAATTGG+AGG | - | chr7.2:20163907-20163926 | None:intergenic | 10.0% |
| !! | TGTTACAATGAAAAAAAAAA+TGG | + | chr7.2:20164174-20164193 | MS.gene41901:intron | 15.0% |
| !!! | TTTATGTATGAAATGTTTTA+GGG | + | chr7.2:20164001-20164020 | MS.gene41901:intron | 15.0% |
| !!! | TTTTTTTTTAGTTCAGTTTT+TGG | + | chr7.2:20163919-20163938 | MS.gene41901:intron | 15.0% |
| !! | TGTTCTACAAAATTTCAAAT+GGG | + | chr7.2:20164688-20164707 | MS.gene41901:intron | 20.0% |
| !! | TTCATTTAAAAGTTCATCAT+TGG | + | chr7.2:20164777-20164796 | MS.gene41901:intron | 20.0% |
| !! | TTCTTGTAGTAAATTGTAAT+TGG | + | chr7.2:20164264-20164283 | MS.gene41901:intron | 20.0% |
| !! | TTGTTCTACAAAATTTCAAA+TGG | + | chr7.2:20164687-20164706 | MS.gene41901:intron | 20.0% |
| !!! | ATTTACATGTTTTTGAAATC+AGG | + | chr7.2:20164085-20164104 | MS.gene41901:intron | 20.0% |
| !!! | CTTTATGTATGAAATGTTTT+AGG | + | chr7.2:20164000-20164019 | MS.gene41901:intron | 20.0% |
| !!! | GGTTTTATGAATAAATTGAA+AGG | + | chr7.2:20164135-20164154 | MS.gene41901:intron | 20.0% |
| !!! | TTTACATGTTTTTGAAATCA+GGG | + | chr7.2:20164086-20164105 | MS.gene41901:intron | 20.0% |
| !!! | TTTTTCTGTTGTATCAATAT+TGG | + | chr7.2:20165340-20165359 | MS.gene41901:intron | 20.0% |
| !!! | TTTTTTTCTTTTTCTATTGC+AGG | + | chr7.2:20165154-20165173 | MS.gene41901:intron | 20.0% |
| ! | ACTGTGTATGAAATGATTTA+GGG | + | chr7.2:20164034-20164053 | MS.gene41901:intron | 25.0% |
| ! | ATAGCATTCATTGAGTAATT+TGG | + | chr7.2:20164605-20164624 | MS.gene41901:intron | 25.0% |
| ! | CAAAAACTAAACCAATTACT+TGG | - | chr7.2:20163963-20163982 | None:intergenic | 25.0% |
| ! | CAACAAAGTGAATTAATGTA+CGG | + | chr7.2:20164640-20164659 | MS.gene41901:intron | 25.0% |
| ! | TACTGTGTATGAAATGATTT+AGG | + | chr7.2:20164033-20164052 | MS.gene41901:intron | 25.0% |
| ! | TTATTCATAAAACCATGACA+TGG | - | chr7.2:20164129-20164148 | None:intergenic | 25.0% |
| ! | TTGTAAACTTATAAGTGTAG+TGG | + | chr7.2:20164356-20164375 | MS.gene41901:intron | 25.0% |
| ! | TTGTATTTAGTGTATGTTGA+GGG | + | chr7.2:20164918-20164937 | MS.gene41901:intron | 25.0% |
| ! | TTTGTATTTAGTGTATGTTG+AGG | + | chr7.2:20164917-20164936 | MS.gene41901:intron | 25.0% |
| !! | TACAGATGAATTTGTTCTTA+TGG | + | chr7.2:20164319-20164338 | MS.gene41901:intron | 25.0% |
| !! | TAGTTTGATTTCCAAGTAAT+TGG | + | chr7.2:20163949-20163968 | MS.gene41901:intron | 25.0% |
| !!! | GGTTTAGTTTTTGATGTTTT+TGG | + | chr7.2:20163970-20163989 | MS.gene41901:intron | 25.0% |
| !!! | TTAATTTGTTAGCTCCATAA+TGG | - | chr7.2:20165718-20165737 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTTGCATGAACTA+AGG | + | chr7.2:20165108-20165127 | MS.gene41901:intron | 25.0% |
| ACTGTCATAAATATTGTGTG+TGG | + | chr7.2:20164992-20165011 | MS.gene41901:intron | 30.0% | |
| ATGTATCTGTGTATCTATAG+AGG | + | chr7.2:20164228-20164247 | MS.gene41901:intron | 30.0% | |
| CAAAATACATGTACAATGTC+AGG | + | chr7.2:20165052-20165071 | MS.gene41901:intron | 30.0% | |
| CATTCATTGAGTAATTTGGT+AGG | + | chr7.2:20164609-20164628 | MS.gene41901:intron | 30.0% | |
| TCTGACACCTACATTATATT+CGG | + | chr7.2:20165450-20165469 | MS.gene41901:CDS | 30.0% | |
| TTGAGGGTTTAACAAAATCA+CGG | + | chr7.2:20164934-20164953 | MS.gene41901:intron | 30.0% | |
| ! | CTGACATTGTACATGTATTT+TGG | - | chr7.2:20165054-20165073 | None:intergenic | 30.0% |
| ! | TTTTCTATTGCAGGATTTGA+AGG | + | chr7.2:20165163-20165182 | MS.gene41901:intron | 30.0% |
| !!! | CATGTATTTTGGTTGTATTC+TGG | - | chr7.2:20165043-20165062 | None:intergenic | 30.0% |
| !!! | GTTTTTGAAATCAGGGTTTT+TGG | + | chr7.2:20164093-20164112 | MS.gene41901:intron | 30.0% |
| ATAATGTAGGTGTCAGAAGT+TGG | - | chr7.2:20165447-20165466 | None:intergenic | 35.0% | |
| ATGAACTAAGGCTACAATGA+TGG | + | chr7.2:20165120-20165139 | MS.gene41901:intron | 35.0% | |
| CTGACACCTACATTATATTC+GGG | + | chr7.2:20165451-20165470 | MS.gene41901:CDS | 35.0% | |
| TATTCTGGTACAGACTAATC+TGG | - | chr7.2:20165028-20165047 | None:intergenic | 35.0% | |
| TGACACCTACATTATATTCG+GGG | + | chr7.2:20165452-20165471 | MS.gene41901:CDS | 35.0% | |
| TGAGGGTTTAACAAAATCAC+GGG | + | chr7.2:20164935-20164954 | MS.gene41901:intron | 35.0% | |
| ! | AACTTGCCTCATTTTGCATT+TGG | + | chr7.2:20164569-20164588 | MS.gene41901:intron | 35.0% |
| AAGAAGCTCTTCTTGGGTTT+GGG | - | chr7.2:20163832-20163851 | None:intergenic | 40.0% | |
| AAGTGAAAAGAAGAGTCGCA+AGG | + | chr7.2:20165216-20165235 | MS.gene41901:CDS | 40.0% | |
| ACCACCAACTCAATATCCTT+GGG | - | chr7.2:20165624-20165643 | None:intergenic | 40.0% | |
| ACGAACAAGATCTGATGAAC+AGG | - | chr7.2:20165396-20165415 | None:intergenic | 40.0% | |
| AGACATTGTTGCTGCCATTA+TGG | + | chr7.2:20165701-20165720 | MS.gene41901:CDS | 40.0% | |
| AGATCCCAAGGATATTGAGT+TGG | + | chr7.2:20165617-20165636 | MS.gene41901:CDS | 40.0% | |
| AGCTTCCCCGAATATAATGT+AGG | - | chr7.2:20165460-20165479 | None:intergenic | 40.0% | |
| CCTTCACCAAATGCAAAATG+AGG | - | chr7.2:20164578-20164597 | None:intergenic | 40.0% | |
| CTTGGAATGAAAGCTGTTAC+TGG | + | chr7.2:20165250-20165269 | MS.gene41901:CDS | 40.0% | |
| GCTTTAACAGCTCTTGATCT+TGG | - | chr7.2:20165663-20165682 | None:intergenic | 40.0% | |
| GGATTTGAATGACCATGTCA+TGG | + | chr7.2:20164114-20164133 | MS.gene41901:intron | 40.0% | |
| GTTGGACTCTTGAAAACATC+TGG | - | chr7.2:20165429-20165448 | None:intergenic | 40.0% | |
| TCAAATGGGTGTTTCATCTG+AGG | + | chr7.2:20164702-20164721 | MS.gene41901:intron | 40.0% | |
| TTGAAAGTCATGCAGAACAG+TGG | - | chr7.2:20165080-20165099 | None:intergenic | 40.0% | |
| ! | CTTTTCACTTCTGGTCTGTT+TGG | - | chr7.2:20165206-20165225 | None:intergenic | 40.0% |
| !! | CCTCATTTTGCATTTGGTGA+AGG | + | chr7.2:20164575-20164594 | MS.gene41901:intron | 40.0% |
| AAACCCACTGCGACAAATTG+TGG | + | chr7.2:20164968-20164987 | MS.gene41901:intron | 45.0% | |
| AAAGCTCTCAAAGCTGCCAA+TGG | + | chr7.2:20165678-20165697 | MS.gene41901:CDS | 45.0% | |
| AGCAGCAAGAAGCTCTTCTT+GGG | - | chr7.2:20163838-20163857 | None:intergenic | 45.0% | |
| AGTACCACAATTTGTCGCAG+TGG | - | chr7.2:20164975-20164994 | None:intergenic | 45.0% | |
| AGTTGAGGATGACGATGATG+AGG | + | chr7.2:20164457-20164476 | MS.gene41901:CDS | 45.0% | |
| CAAGAAGCTCTTCTTGGGTT+TGG | - | chr7.2:20163833-20163852 | None:intergenic | 45.0% | |
| CACCACCAACTCAATATCCT+TGG | - | chr7.2:20165625-20165644 | None:intergenic | 45.0% | |
| CGCAAGGCAATGCTTAAACT+TGG | + | chr7.2:20165232-20165251 | MS.gene41901:CDS | 45.0% | |
| GCTCCTAATTTGACCAATGC+GGG | + | chr7.2:20165534-20165553 | MS.gene41901:CDS | 45.0% | |
| GGATTTGAAGGTGATGCATC+TGG | + | chr7.2:20165175-20165194 | MS.gene41901:intron | 45.0% | |
| GGCTCCTAATTTGACCAATG+CGG | + | chr7.2:20165533-20165552 | MS.gene41901:CDS | 45.0% | |
| GTACCACAATTTGTCGCAGT+GGG | - | chr7.2:20164974-20164993 | None:intergenic | 45.0% | |
| TCATCGTCATCCTCAACTAC+AGG | - | chr7.2:20164455-20164474 | None:intergenic | 45.0% | |
| TCGTCTACATCCTCATCTTC+TGG | - | chr7.2:20165588-20165607 | None:intergenic | 45.0% | |
| TGGTATTGCTCCAGAAGATG+AGG | + | chr7.2:20165575-20165594 | MS.gene41901:CDS | 45.0% | |
| TTGAAGGTGATGCATCTGGT+AGG | + | chr7.2:20165179-20165198 | MS.gene41901:CDS | 45.0% | |
| ! | GCGACTCTTCTTTTCACTTC+TGG | - | chr7.2:20165215-20165234 | None:intergenic | 45.0% |
| !! | ATCTTCTGGAGCAATACCAG+AGG | - | chr7.2:20165574-20165593 | None:intergenic | 45.0% |
| !! | TCCCAAGGATATTGAGTTGG+TGG | + | chr7.2:20165620-20165639 | MS.gene41901:CDS | 45.0% |
| !! | CTAAAAAAAAAATAATAAAT+TGG | - | chr7.2:20163910-20163929 | None:intergenic | 5.0% |
| GAGCAGCAAGAAGCTCTTCT+TGG | - | chr7.2:20163839-20163858 | None:intergenic | 50.0% | |
| GAGCTCACAGCTACAAACTC+AGG | + | chr7.2:20165494-20165513 | MS.gene41901:CDS | 50.0% | |
| GAGGACGATGACAATGCTGA+AGG | + | chr7.2:20164509-20164528 | MS.gene41901:CDS | 50.0% | |
| GATGAGGATGTAGACGAGAC+TGG | + | chr7.2:20165591-20165610 | MS.gene41901:CDS | 50.0% | |
| GCATGATGAGCCTGTAGTTG+AGG | + | chr7.2:20164442-20164461 | MS.gene41901:intron | 50.0% | |
| GGAGCAATACCAGAGGATTC+TGG | - | chr7.2:20165567-20165586 | None:intergenic | 50.0% | |
| GGCAGCAACAATGTCTCCAT+TGG | - | chr7.2:20165697-20165716 | None:intergenic | 50.0% | |
| TGACGAAGACGACGATGATG+AGG | + | chr7.2:20164490-20164509 | MS.gene41901:CDS | 50.0% | |
| TGACGATGATGAGGACGATG+AGG | + | chr7.2:20164466-20164485 | MS.gene41901:CDS | 50.0% | |
| ! | GCACCCGCATTGGTCAAATT+AGG | - | chr7.2:20165540-20165559 | None:intergenic | 50.0% |
| CGAGACTGGTGTAGATCCCA+AGG | + | chr7.2:20165605-20165624 | MS.gene41901:CDS | 55.0% | |
| GGTGCGAAACCAGAATCCTC+TGG | + | chr7.2:20165555-20165574 | MS.gene41901:CDS | 55.0% | |
| TCAGGCTGCAGAGCAGTTCA+AGG | + | chr7.2:20165512-20165531 | MS.gene41901:CDS | 55.0% | |
| !! | GAGTTGGTGGTGACTCAAGC+TGG | + | chr7.2:20165633-20165652 | MS.gene41901:CDS | 55.0% |
| !! | TTCTGGTTTCGCACCCGCAT+TGG | - | chr7.2:20165550-20165569 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 20163822 | 20165737 | 20163822 | ID=MS.gene41901 |
| chr7.2 | mRNA | 20163822 | 20165737 | 20163822 | ID=MS.gene41901.t1;Parent=MS.gene41901 |
| chr7.2 | exon | 20163822 | 20163881 | 20163822 | ID=MS.gene41901.t1.exon1;Parent=MS.gene41901.t1 |
| chr7.2 | CDS | 20163822 | 20163881 | 20163822 | ID=cds.MS.gene41901.t1;Parent=MS.gene41901.t1 |
| chr7.2 | exon | 20164443 | 20164530 | 20164443 | ID=MS.gene41901.t1.exon2;Parent=MS.gene41901.t1 |
| chr7.2 | CDS | 20164443 | 20164530 | 20164443 | ID=cds.MS.gene41901.t1;Parent=MS.gene41901.t1 |
| chr7.2 | exon | 20165176 | 20165306 | 20165176 | ID=MS.gene41901.t1.exon3;Parent=MS.gene41901.t1 |
| chr7.2 | CDS | 20165176 | 20165306 | 20165176 | ID=cds.MS.gene41901.t1;Parent=MS.gene41901.t1 |
| chr7.2 | exon | 20165405 | 20165737 | 20165405 | ID=MS.gene41901.t1.exon4;Parent=MS.gene41901.t1 |
| chr7.2 | CDS | 20165405 | 20165737 | 20165405 | ID=cds.MS.gene41901.t1;Parent=MS.gene41901.t1 |
| Gene Sequence |
| Protein sequence |
