Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21636.t1 | KEH27428.1 | 100 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 8.10E-74 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21636.t1 | Q9SW09 | 59.4 | 192 | 43 | 3 | 1 | 177 | 1 | 172 | 6.1e-46 | 185.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21636.t1 | A0A072UEC5 | 100.0 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 5.9e-74 | 286.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene21636 | 0.874535 | 6.26E-68 | -1.69E-46 |
| MS.gene050281 | MS.gene21636 | 0.817308 | 3.53E-52 | -1.69E-46 |
| MS.gene050290 | MS.gene21636 | 0.913233 | 7.80E-84 | -1.69E-46 |
| MS.gene050916 | MS.gene21636 | 0.806464 | 8.12E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene21636 | 0.84058 | 7.98E-58 | -1.69E-46 |
| MS.gene051904 | MS.gene21636 | 0.832748 | 7.92E-56 | -1.69E-46 |
| MS.gene053952 | MS.gene21636 | 0.832653 | 8.36E-56 | -1.69E-46 |
| MS.gene054937 | MS.gene21636 | 0.879967 | 8.08E-70 | -1.69E-46 |
| MS.gene056399 | MS.gene21636 | 0.811147 | 8.10E-51 | -1.69E-46 |
| MS.gene056917 | MS.gene21636 | 0.809806 | 1.58E-50 | -1.69E-46 |
| MS.gene057052 | MS.gene21636 | 0.857257 | 1.85E-62 | -1.69E-46 |
| MS.gene057092 | MS.gene21636 | 0.820658 | 6.10E-53 | -1.69E-46 |
| MS.gene057094 | MS.gene21636 | 0.82914 | 6.08E-55 | -1.69E-46 |
| MS.gene057235 | MS.gene21636 | 0.829733 | 4.36E-55 | -1.69E-46 |
| MS.gene06001 | MS.gene21636 | 0.811617 | 6.40E-51 | -1.69E-46 |
| MS.gene060126 | MS.gene21636 | 0.810784 | 9.70E-51 | -1.69E-46 |
| MS.gene060856 | MS.gene21636 | 0.851724 | 7.36E-61 | -1.69E-46 |
| MS.gene061145 | MS.gene21636 | 0.872868 | 2.28E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21636 | MS.gene056722 | PPI |
| MS.gene21636 | MS.gene047001 | PPI |
| MS.gene21636 | MS.gene019556 | PPI |
| MS.gene21636 | MS.gene040115 | PPI |
| MS.gene21636 | MS.gene001756 | PPI |
| MS.gene21636 | MS.gene93753 | PPI |
| MS.gene21636 | MS.gene94561 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21636.t1 | MTR_5g010025 | 100.000 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 2.96e-130 | 363 |
| MS.gene21636.t1 | MTR_8g098850 | 93.889 | 180 | 8 | 1 | 1 | 180 | 1 | 177 | 2.73e-120 | 337 |
| MS.gene21636.t1 | MTR_8g098850 | 93.333 | 135 | 6 | 1 | 46 | 180 | 1 | 132 | 2.06e-83 | 242 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21636.t1 | AT4G25740 | 81.935 | 155 | 23 | 1 | 1 | 155 | 1 | 150 | 6.97e-80 | 235 |
| MS.gene21636.t1 | AT5G52650 | 80.000 | 155 | 30 | 1 | 1 | 155 | 1 | 154 | 1.75e-73 | 219 |
| MS.gene21636.t1 | AT5G41520 | 75.974 | 154 | 32 | 5 | 1 | 153 | 1 | 150 | 2.16e-70 | 211 |
| MS.gene21636.t1 | AT4G25740 | 63.277 | 177 | 32 | 1 | 1 | 177 | 1 | 144 | 5.82e-60 | 184 |
| MS.gene21636.t1 | AT5G41520 | 75.926 | 108 | 22 | 4 | 46 | 153 | 1 | 104 | 5.74e-43 | 140 |
Find 67 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGACCTGCTGGTGAATT+TGG | 0.215916 | 5.2:-3340504 | MS.gene21636:CDS |
| AGATTTGGCACATCGATTTC+TGG | 0.226768 | 5.2:+3340892 | None:intergenic |
| AGCTTAATCACTTGCAGATT+TGG | 0.235590 | 5.2:+3340877 | None:intergenic |
| TGCAAAGAAGGATTTCAATT+TGG | 0.241273 | 5.2:-3340923 | MS.gene21636:CDS |
| TTGCTTGGATGAACTATTAC+TGG | 0.272334 | 5.2:-3340813 | MS.gene21636:CDS |
| GCTGACTACAGGCCTTCTTT+TGG | 0.293788 | 5.2:-3340459 | MS.gene21636:CDS |
| CCTGGCTTCGGTCGTGGTTC+TGG | 0.294525 | 5.2:-3339012 | MS.gene21636:CDS |
| TTTGATGGAGAAAGGAGATT+TGG | 0.304890 | 5.2:-3340558 | MS.gene21636:CDS |
| GGTCGTGGTTCTGGTGGCTT+TGG | 0.306704 | 5.2:-3339003 | MS.gene21636:CDS |
| CTCCTTTCTCCATCAAATCT+TGG | 0.337377 | 5.2:+3340564 | None:intergenic |
| AAGCCAGCTGGAAGGCCCTT+TGG | 0.353720 | 5.2:-3340703 | MS.gene21636:CDS |
| TGATGCAGAGCTTCAAATCT+AGG | 0.370024 | 5.2:-3340855 | MS.gene21636:CDS |
| TACTGGTTCCTTACCAATGA+TGG | 0.373159 | 5.2:-3340796 | MS.gene21636:CDS |
| AGGCCCTTTGGTGGTCCTCC+TGG | 0.384336 | 5.2:-3340691 | MS.gene21636:CDS |
| GATTTGGCACATCGATTTCT+GGG | 0.410537 | 5.2:+3340893 | None:intergenic |
| CAGGGTCCTGGTGGTAGACC+TGG | 0.422429 | 5.2:-3339030 | MS.gene21636:CDS |
| TAAGCATCGTTTGAACTAGT+TGG | 0.424537 | 5.2:+3338976 | None:intergenic |
| GAGAAACTCAATTCCATCAT+TGG | 0.425707 | 5.2:+3340783 | None:intergenic |
| CCACCAAAGGGCCTTCCAGC+TGG | 0.433378 | 5.2:+3340700 | None:intergenic |
| ATGATGGAATTGAGTTTCTC+AGG | 0.441503 | 5.2:-3340780 | MS.gene21636:CDS |
| AATTCACCAGCAGGTCCTCT+TGG | 0.445100 | 5.2:+3340507 | None:intergenic |
| TCCTGCTACTTTGAAGAAGC+AGG | 0.450643 | 5.2:-3340728 | MS.gene21636:CDS |
| CTGACTCTATTGCAGGGTCC+TGG | 0.452836 | 5.2:-3339042 | MS.gene21636:intron |
| GCCTGCTTCTTCAAAGTAGC+AGG | 0.453311 | 5.2:+3340727 | None:intergenic |
| ATTCACCAGCAGGTCCTCTT+GGG | 0.458492 | 5.2:+3340508 | None:intergenic |
| AGGGGCCCACCAAGATTTGA+TGG | 0.462295 | 5.2:-3340573 | MS.gene21636:CDS |
| GGGAGTTTGCTATGCAAAGA+AGG | 0.473090 | 5.2:-3340935 | MS.gene21636:CDS |
| CTTTCTCCATCAAATCTTGG+TGG | 0.474542 | 5.2:+3340567 | None:intergenic |
| AAGAAGCAGGCTAAGCCAGC+TGG | 0.479610 | 5.2:-3340715 | MS.gene21636:CDS |
| GGTAGACCTGGCTTCGGTCG+TGG | 0.484946 | 5.2:-3339018 | MS.gene21636:CDS |
| GATGGAGAAAGGAGATTTGG+TGG | 0.486392 | 5.2:-3340555 | MS.gene21636:CDS |
| GGCTTCGGTCGTGGTTCTGG+TGG | 0.490892 | 5.2:-3339009 | MS.gene21636:CDS |
| CAGGTCCTCTTGGGCCTCCA+CGG | 0.492606 | 5.2:+3340517 | None:intergenic |
| CACCAAGATTTGATGGAGAA+AGG | 0.498036 | 5.2:-3340566 | MS.gene21636:CDS |
| TTTCTCCATCAAATCTTGGT+GGG | 0.498924 | 5.2:+3340568 | None:intergenic |
| ATCACCAGGAGGACCACCAA+AGG | 0.501155 | 5.2:+3340687 | None:intergenic |
| CCAGCTGGAAGGCCCTTTGG+TGG | 0.502902 | 5.2:-3340700 | MS.gene21636:CDS |
| GTGGAGCTCCAGCTGACTAC+AGG | 0.506847 | 5.2:-3340470 | MS.gene21636:CDS |
| AAGATTATTACCCCAAAAGA+AGG | 0.511567 | 5.2:+3340447 | None:intergenic |
| TCTCCTCCAAATTCACCAGC+AGG | 0.516678 | 5.2:+3340498 | None:intergenic |
| AAAGAAGGCCTGTAGTCAGC+TGG | 0.516901 | 5.2:+3340462 | None:intergenic |
| CCTGGTGGTAGACCTGGCTT+CGG | 0.526626 | 5.2:-3339024 | MS.gene21636:CDS |
| GTCCTCCTGGTGATCGCCCT+AGG | 0.527814 | 5.2:-3340678 | MS.gene21636:intron |
| GGACCTGCTGGTGAATTTGG+AGG | 0.530997 | 5.2:-3340501 | MS.gene21636:CDS |
| CCAGAACCACGACCGAAGCC+AGG | 0.533716 | 5.2:+3339012 | None:intergenic |
| ACTCAATTCCATCATTGGTA+AGG | 0.545851 | 5.2:+3340788 | None:intergenic |
| GGAGGCCCAAGAGGACCTGC+TGG | 0.551228 | 5.2:-3340513 | MS.gene21636:CDS |
| GGTATTTGCAGATCTCTCTA+CGG | 0.553257 | 5.2:+3341056 | None:intergenic |
| CACAAGACATACCTTGGAAG+AGG | 0.559210 | 5.2:+3341035 | None:intergenic |
| GTAGCAGGAACAATCTCAGA+TGG | 0.565512 | 5.2:+3340742 | None:intergenic |
| TCACCAGGAGGACCACCAAA+GGG | 0.567521 | 5.2:+3340688 | None:intergenic |
| AGCAGGCTAAGCCAGCTGGA+AGG | 0.574627 | 5.2:-3340711 | MS.gene21636:CDS |
| AATTACCTAGGGCGATCACC+AGG | 0.586300 | 5.2:+3340673 | None:intergenic |
| GGCCTCCACGGTATCCATCA+CGG | 0.588978 | 5.2:+3340529 | None:intergenic |
| ATCTGCAAATACCTCTTCCA+AGG | 0.590451 | 5.2:-3341046 | MS.gene21636:intron |
| CCGAAGCCAGGTCTACCACC+AGG | 0.597635 | 5.2:+3339024 | None:intergenic |
| GATGCAGAGCTTCAAATCTA+GGG | 0.604467 | 5.2:-3340854 | MS.gene21636:CDS |
| TCAAATCTAGGGAATATGTG+AGG | 0.607518 | 5.2:-3340843 | MS.gene21636:CDS |
| CAAATCTAGGGAATATGTGA+GGG | 0.609242 | 5.2:-3340842 | MS.gene21636:CDS |
| ACTCTATTGCAGGGTCCTGG+TGG | 0.611110 | 5.2:-3339039 | MS.gene21636:intron |
| GGATACCGTGGAGGCCCAAG+AGG | 0.629598 | 5.2:-3340522 | MS.gene21636:CDS |
| AGATTTGGTGGTGACCGTGA+TGG | 0.637340 | 5.2:-3340543 | MS.gene21636:CDS |
| GGTGAATTTGGAGGAGACAA+AGG | 0.655884 | 5.2:-3340492 | MS.gene21636:CDS |
| GAATTTGGAGGAGACAAAGG+TGG | 0.658883 | 5.2:-3340489 | MS.gene21636:CDS |
| GACCGTGATGGATACCGTGG+AGG | 0.697879 | 5.2:-3340531 | MS.gene21636:CDS |
| GGTGACCGTGATGGATACCG+TGG | 0.715974 | 5.2:-3340534 | MS.gene21636:CDS |
| TACCTAGGGCGATCACCAGG+AGG | 0.726307 | 5.2:+3340676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATATAAAAATTGAG+CGG | - | chr5.2:3340682-3340701 | MS.gene21636:CDS | 10.0% |
| !!! | TTTTTTTATGTTTTGTTATT+TGG | - | chr5.2:3339522-3339541 | MS.gene21636:intron | 10.0% |
| !! | AATAAATATAAAAATTGAGC+GGG | - | chr5.2:3340683-3340702 | MS.gene21636:CDS | 15.0% |
| !! | AATTCCAAATTAATTACCTA+GGG | + | chr5.2:3339488-3339507 | None:intergenic | 20.0% |
| !! | TCAAATCAAAGATAATATTG+AGG | + | chr5.2:3339869-3339888 | None:intergenic | 20.0% |
| !!! | TTTAACTAGTTTAATAGAGT+TGG | - | chr5.2:3340151-3340170 | MS.gene21636:intron | 20.0% |
| !!! | TTTATGTTTTGTTATTTGGT+CGG | - | chr5.2:3339526-3339545 | MS.gene21636:intron | 20.0% |
| ! | ATTTGTACAGAAAAAGAAAC+AGG | - | chr5.2:3340369-3340388 | MS.gene21636:intron | 25.0% |
| ! | CAATTCCAAATTAATTACCT+AGG | + | chr5.2:3339489-3339508 | None:intergenic | 25.0% |
| ! | CCAATAGAATTATATACATG+AGG | + | chr5.2:3341057-3341076 | None:intergenic | 25.0% |
| ! | CCTCATGTATATAATTCTAT+TGG | - | chr5.2:3341054-3341073 | MS.gene21636:CDS | 25.0% |
| ! | TTATTGTGTTGTGTTTGAAT+TGG | - | chr5.2:3339166-3339185 | MS.gene21636:intron | 25.0% |
| !!! | AAACTGTTGTTATTTTTCAG+AGG | - | chr5.2:3339191-3339210 | MS.gene21636:intron | 25.0% |
| !!! | AACTGTTGTTATTTTTCAGA+GGG | - | chr5.2:3339192-3339211 | MS.gene21636:intron | 25.0% |
| !!! | ATGTTGTGTTTGTTATGATT+TGG | - | chr5.2:3339756-3339775 | MS.gene21636:intron | 25.0% |
| !!! | TTTTGGGGTAATAATCTTAT+TGG | - | chr5.2:3339705-3339724 | MS.gene21636:intron | 25.0% |
| !!! | TTTTGTTATGGTGTTTTATG+CGG | - | chr5.2:3339818-3339837 | MS.gene21636:intron | 25.0% |
| AAGATTATTACCCCAAAAGA+AGG | + | chr5.2:3339703-3339722 | None:intergenic | 30.0% | |
| ATACTGTATACCAACTTGTA+GGG | + | chr5.2:3340927-3340946 | None:intergenic | 30.0% | |
| ATGTCTTGTGCAATAATCTA+GGG | - | chr5.2:3339125-3339144 | MS.gene21636:intron | 30.0% | |
| ATTATATACATGAGGAAAGC+AGG | + | chr5.2:3341049-3341068 | None:intergenic | 30.0% | |
| CACATAAAAATGAGTATGCT+TGG | - | chr5.2:3340346-3340365 | MS.gene21636:intron | 30.0% | |
| CACTTTACAGTAAGAAAGAA+TGG | - | chr5.2:3340427-3340446 | MS.gene21636:intron | 30.0% | |
| CAGAAGAATAAAACTTGATC+AGG | + | chr5.2:3341088-3341107 | None:intergenic | 30.0% | |
| GAGATAAGAGTAAGAAAGAA+TGG | - | chr5.2:3340449-3340468 | MS.gene21636:intron | 30.0% | |
| TAAAATTGGAATCGCGTAAA+TGG | + | chr5.2:3339029-3339048 | None:intergenic | 30.0% | |
| TATATGCAAAACAAGTGTAG+TGG | - | chr5.2:3340096-3340115 | MS.gene21636:intron | 30.0% | |
| TATGTCTTGTGCAATAATCT+AGG | - | chr5.2:3339124-3339143 | MS.gene21636:intron | 30.0% | |
| TGCAAAGAAGGATTTCAATT+TGG | - | chr5.2:3339224-3339243 | MS.gene21636:intron | 30.0% | |
| TTTAGTAGATTATGTCTTGC+TGG | - | chr5.2:3340496-3340515 | MS.gene21636:CDS | 30.0% | |
| ! | TTTAATAGAGTTGGTTCCAA+TGG | - | chr5.2:3340160-3340179 | MS.gene21636:intron | 30.0% |
| ! | TTTTCATTGTCAAGTAGACT+TGG | - | chr5.2:3339937-3339956 | MS.gene21636:intron | 30.0% |
| !! | ATTGTTCTATCCAAGTTGAT+AGG | - | chr5.2:3340186-3340205 | MS.gene21636:intron | 30.0% |
| !! | CAAGCATACTCATTTTTATG+TGG | + | chr5.2:3340348-3340367 | None:intergenic | 30.0% |
| !! | TGTTTTATGCGGGTTAATTT+TGG | - | chr5.2:3339829-3339848 | MS.gene21636:intron | 30.0% |
| !! | TTGTTCTATCCAAGTTGATA+GGG | - | chr5.2:3340187-3340206 | MS.gene21636:intron | 30.0% |
| !! | TTTGTTATGGTGTTTTATGC+GGG | - | chr5.2:3339819-3339838 | MS.gene21636:intron | 30.0% |
| AAGGAAATCGAGTCAATATG+AGG | + | chr5.2:3340820-3340839 | None:intergenic | 35.0% | |
| ACTCAATTCCATCATTGGTA+AGG | + | chr5.2:3339362-3339381 | None:intergenic | 35.0% | |
| AGCAATATACACAAGACACA+AGG | + | chr5.2:3339909-3339928 | None:intergenic | 35.0% | |
| AGCTTAATCACTTGCAGATT+TGG | + | chr5.2:3339273-3339292 | None:intergenic | 35.0% | |
| ATAAATACCCAGATTGAGAG+AGG | - | chr5.2:3340549-3340568 | MS.gene21636:CDS | 35.0% | |
| ATCGCCCTAGGTAATTAATT+TGG | - | chr5.2:3339481-3339500 | MS.gene21636:intron | 35.0% | |
| ATGCACCATAACTCAAAGTA+AGG | + | chr5.2:3340960-3340979 | None:intergenic | 35.0% | |
| ATTCTGCCCACAAAAACATT+CGG | - | chr5.2:3340271-3340290 | MS.gene21636:intron | 35.0% | |
| ATTCTTCTGACTCTATTGCA+GGG | - | chr5.2:3341099-3341118 | MS.gene21636:intron | 35.0% | |
| CAAATCTAGGGAATATGTGA+GGG | - | chr5.2:3339305-3339324 | MS.gene21636:intron | 35.0% | |
| CATACTGTATACCAACTTGT+AGG | + | chr5.2:3340928-3340947 | None:intergenic | 35.0% | |
| GAGAAACTCAATTCCATCAT+TGG | + | chr5.2:3339367-3339386 | None:intergenic | 35.0% | |
| GATACGATGATGATTCTGTT+CGG | - | chr5.2:3339791-3339810 | MS.gene21636:intron | 35.0% | |
| GCAATATACACAAGACACAA+GGG | + | chr5.2:3339908-3339927 | None:intergenic | 35.0% | |
| GTACTATTAGCAGTATGTCA+CGG | - | chr5.2:3340739-3340758 | MS.gene21636:CDS | 35.0% | |
| TACTATTAGCAGTATGTCAC+GGG | - | chr5.2:3340740-3340759 | MS.gene21636:CDS | 35.0% | |
| TATTCTTCTGACTCTATTGC+AGG | - | chr5.2:3341098-3341117 | MS.gene21636:intron | 35.0% | |
| TATTTGGTCGGTTGATTGAA+TGG | - | chr5.2:3339538-3339557 | MS.gene21636:intron | 35.0% | |
| TCAAAAGCTAAATCCAGTTG+TGG | + | chr5.2:3340775-3340794 | None:intergenic | 35.0% | |
| TCAAATCTAGGGAATATGTG+AGG | - | chr5.2:3339304-3339323 | MS.gene21636:intron | 35.0% | |
| TCTCTTGGATAAAGTAGCAA+AGG | - | chr5.2:3340610-3340629 | MS.gene21636:intron | 35.0% | |
| TGGATAGAACAATGAACCAT+TGG | + | chr5.2:3340179-3340198 | None:intergenic | 35.0% | |
| TTATTGCACAAGACATACCT+TGG | + | chr5.2:3339121-3339140 | None:intergenic | 35.0% | |
| TTGCTTGGATGAACTATTAC+TGG | - | chr5.2:3339334-3339353 | MS.gene21636:intron | 35.0% | |
| TTTCTCCATCAAATCTTGGT+GGG | + | chr5.2:3339582-3339601 | None:intergenic | 35.0% | |
| TTTGATGGAGAAAGGAGATT+TGG | - | chr5.2:3339589-3339608 | MS.gene21636:intron | 35.0% | |
| ! | ATGATGGAATTGAGTTTCTC+AGG | - | chr5.2:3339367-3339386 | MS.gene21636:intron | 35.0% |
| ! | CTCTACCTTACTTTGAGTTA+TGG | - | chr5.2:3340952-3340971 | MS.gene21636:intron | 35.0% |
| ! | CTGTTCGGTTCATTTTGTTA+TGG | - | chr5.2:3339806-3339825 | MS.gene21636:intron | 35.0% |
| ! | GCGTAAATGGATTCAAAGAA+TGG | + | chr5.2:3339016-3339035 | None:intergenic | 35.0% |
| ! | TAAGCATCGTTTGAACTAGT+TGG | + | chr5.2:3341174-3341193 | None:intergenic | 35.0% |
| !! | AATGTTTTTGTGGGCAGAAT+TGG | + | chr5.2:3340271-3340290 | None:intergenic | 35.0% |
| !! | ACAAAAACATTCGGTTTTGG+AGG | - | chr5.2:3340280-3340299 | MS.gene21636:intron | 35.0% |
| !! | ATGTTTTTGTGGGCAGAATT+GGG | + | chr5.2:3340270-3340289 | None:intergenic | 35.0% |
| !! | CCAAAACCGAATGTTTTTGT+GGG | + | chr5.2:3340280-3340299 | None:intergenic | 35.0% |
| !! | TCCAAAACCGAATGTTTTTG+TGG | + | chr5.2:3340281-3340300 | None:intergenic | 35.0% |
| !!! | AATGGAATGTGTTTTGACAG+GGG | - | chr5.2:3339556-3339575 | MS.gene21636:intron | 35.0% |
| !!! | CAAAAACATTCGGTTTTGGA+GGG | - | chr5.2:3340281-3340300 | MS.gene21636:intron | 35.0% |
| !!! | GAATGGAATGTGTTTTGACA+GGG | - | chr5.2:3339555-3339574 | MS.gene21636:intron | 35.0% |
| !!! | TGAATGGAATGTGTTTTGAC+AGG | - | chr5.2:3339554-3339573 | MS.gene21636:intron | 35.0% |
| AGAGTACATCTCAAACTTGC+TGG | - | chr5.2:3340004-3340023 | MS.gene21636:intron | 40.0% | |
| AGTCAATATGAGGTGATTCG+AGG | + | chr5.2:3340810-3340829 | None:intergenic | 40.0% | |
| ATCTGCAAATACCTCTTCCA+AGG | - | chr5.2:3339101-3339120 | MS.gene21636:intron | 40.0% | |
| CACCAAGATTTGATGGAGAA+AGG | - | chr5.2:3339581-3339600 | MS.gene21636:intron | 40.0% | |
| CTCCTTTCTCCATCAAATCT+TGG | + | chr5.2:3339586-3339605 | None:intergenic | 40.0% | |
| CTTTCTCCATCAAATCTTGG+TGG | + | chr5.2:3339583-3339602 | None:intergenic | 40.0% | |
| GACATTGCTTGGATAGACAA+AGG | - | chr5.2:3340705-3340724 | MS.gene21636:CDS | 40.0% | |
| GATGCAGAGCTTCAAATCTA+GGG | - | chr5.2:3339293-3339312 | MS.gene21636:intron | 40.0% | |
| GGTATTTGCAGATCTCTCTA+CGG | + | chr5.2:3339094-3339113 | None:intergenic | 40.0% | |
| GTCAAATGCTTCTTCTCTCT+TGG | - | chr5.2:3340595-3340614 | MS.gene21636:intron | 40.0% | |
| GTCAATATGAGGTGATTCGA+GGG | + | chr5.2:3340809-3340828 | None:intergenic | 40.0% | |
| TCAATATGAGGTGATTCGAG+GGG | + | chr5.2:3340808-3340827 | None:intergenic | 40.0% | |
| TGATGCAGAGCTTCAAATCT+AGG | - | chr5.2:3339292-3339311 | MS.gene21636:intron | 40.0% | |
| ! | ATGTGAGGGAAACTTTTGCT+TGG | - | chr5.2:3339319-3339338 | MS.gene21636:intron | 40.0% |
| ! | CCCACAAAAACATTCGGTTT+TGG | - | chr5.2:3340277-3340296 | MS.gene21636:intron | 40.0% |
| ! | TTGATTTGATCTCCACAGTG+TGG | - | chr5.2:3339880-3339899 | MS.gene21636:intron | 40.0% |
| !! | AGATTTGGCACATCGATTTC+TGG | + | chr5.2:3339258-3339277 | None:intergenic | 40.0% |
| !! | GATTTGGCACATCGATTTCT+GGG | + | chr5.2:3339257-3339276 | None:intergenic | 40.0% |
| !! | TACTGGTTCCTTACCAATGA+TGG | - | chr5.2:3339351-3339370 | MS.gene21636:intron | 40.0% |
| AAATTGAGCGGGACATTGCT+TGG | - | chr5.2:3340694-3340713 | MS.gene21636:CDS | 45.0% | |
| AATACCCAGATTGAGAGAGG+AGG | - | chr5.2:3340552-3340571 | MS.gene21636:CDS | 45.0% | |
| CAATATGAGGTGATTCGAGG+GGG | + | chr5.2:3340807-3340826 | None:intergenic | 45.0% | |
| CACAAGACATACCTTGGAAG+AGG | + | chr5.2:3339115-3339134 | None:intergenic | 45.0% | |
| GAATTTGGAGGAGACAAAGG+TGG | - | chr5.2:3339658-3339677 | MS.gene21636:intron | 45.0% | |
| GATGGAGAAAGGAGATTTGG+TGG | - | chr5.2:3339592-3339611 | MS.gene21636:intron | 45.0% | |
| GGTGAATTTGGAGGAGACAA+AGG | - | chr5.2:3339655-3339674 | MS.gene21636:intron | 45.0% | |
| GTAGCAGGAACAATCTCAGA+TGG | + | chr5.2:3339408-3339427 | None:intergenic | 45.0% | |
| TATTAGCAGTATGTCACGGG+CGG | - | chr5.2:3340743-3340762 | MS.gene21636:CDS | 45.0% | |
| TCATCCATCATGGCAAGTTC+AGG | + | chr5.2:3340235-3340254 | None:intergenic | 45.0% | |
| ! | CTGACTACAGGCCTTCTTTT+GGG | - | chr5.2:3339689-3339708 | MS.gene21636:intron | 45.0% |
| ! | GTGATCGGTTTCATCCATCA+TGG | + | chr5.2:3340245-3340264 | None:intergenic | 45.0% |
| ! | TGACTACAGGCCTTCTTTTG+GGG | - | chr5.2:3339690-3339709 | MS.gene21636:intron | 45.0% |
| ! | TTTTTGTGGGCAGAATTGGG+CGG | + | chr5.2:3340267-3340286 | None:intergenic | 45.0% |
| !! | AAGTTGATAGGGTTGAGCGT+CGG | - | chr5.2:3340198-3340217 | MS.gene21636:intron | 45.0% |
| !! | GGGAGTTTGCTATGCAAAGA+AGG | - | chr5.2:3339212-3339231 | MS.gene21636:intron | 45.0% |
| !! | TCCTGCTACTTTGAAGAAGC+AGG | - | chr5.2:3339419-3339438 | MS.gene21636:intron | 45.0% |
| !! | AAACAAAAAATTAATAAAAT+TGG | + | chr5.2:3339043-3339062 | None:intergenic | 5.0% |
| !! | ATACTTTAATAATATTAAAA+TGG | + | chr5.2:3340643-3340662 | None:intergenic | 5.0% |
| AAAGAAGGCCTGTAGTCAGC+TGG | + | chr5.2:3339688-3339707 | None:intergenic | 50.0% | |
| AATTACCTAGGGCGATCACC+AGG | + | chr5.2:3339477-3339496 | None:intergenic | 50.0% | |
| AATTCACCAGCAGGTCCTCT+TGG | + | chr5.2:3339643-3339662 | None:intergenic | 50.0% | |
| AGAGGACCTGCTGGTGAATT+TGG | - | chr5.2:3339643-3339662 | MS.gene21636:intron | 50.0% | |
| ATTAGCAGTATGTCACGGGC+GGG | - | chr5.2:3340744-3340763 | MS.gene21636:CDS | 50.0% | |
| ATTCACCAGCAGGTCCTCTT+GGG | + | chr5.2:3339642-3339661 | None:intergenic | 50.0% | |
| GACGCTCAACCCTATCAACT+TGG | + | chr5.2:3340199-3340218 | None:intergenic | 50.0% | |
| GCCTGCTTCTTCAAAGTAGC+AGG | + | chr5.2:3339423-3339442 | None:intergenic | 50.0% | |
| GGGTCAGATTTCACGGGTAA+CGG | + | chr5.2:3340853-3340872 | None:intergenic | 50.0% | |
| GGTCAGATTTCACGGGTAAC+GGG | + | chr5.2:3340852-3340871 | None:intergenic | 50.0% | |
| GGTGATCGGGTCAGATTTCA+CGG | + | chr5.2:3340860-3340879 | None:intergenic | 50.0% | |
| GTGATCGGGTCAGATTTCAC+GGG | + | chr5.2:3340859-3340878 | None:intergenic | 50.0% | |
| TCTCCTCCAAATTCACCAGC+AGG | + | chr5.2:3339652-3339671 | None:intergenic | 50.0% | |
| ! | ACAACAACCGGTTGCTGTTC+AGG | + | chr5.2:3340881-3340900 | None:intergenic | 50.0% |
| ! | ACCGGTTGTTGTTCGTGTCA+CGG | - | chr5.2:3340889-3340908 | MS.gene21636:CDS | 50.0% |
| ! | AGAGAGGAGGCGCAAAACAT+TGG | - | chr5.2:3340565-3340584 | MS.gene21636:CDS | 50.0% |
| ! | GCTGACTACAGGCCTTCTTT+TGG | - | chr5.2:3339688-3339707 | MS.gene21636:intron | 50.0% |
| !! | AGATTTGGTGGTGACCGTGA+TGG | - | chr5.2:3339604-3339623 | MS.gene21636:intron | 50.0% |
| !! | GGGTAACGGGTGAAACACAA+AGG | + | chr5.2:3340839-3340858 | None:intergenic | 50.0% |
| !!! | CATTCGGTTTTGGAGGGTCT+CGG | - | chr5.2:3340287-3340306 | MS.gene21636:intron | 50.0% |
| AAGAAGCAGGCTAAGCCAGC+TGG | - | chr5.2:3339432-3339451 | MS.gene21636:intron | 55.0% | |
| ACTCTATTGCAGGGTCCTGG+TGG | - | chr5.2:3341108-3341127 | MS.gene21636:intron | 55.0% | |
| AGGGGCCCACCAAGATTTGA+TGG | - | chr5.2:3339574-3339593 | MS.gene21636:intron | 55.0% | |
| ATCACCAGGAGGACCACCAA+AGG | + | chr5.2:3339463-3339482 | None:intergenic | 55.0% | |
| CCCGTGACACGAACAACAAC+CGG | + | chr5.2:3340893-3340912 | None:intergenic | 55.0% | |
| CCGATCACCTGAACAGCAAC+CGG | - | chr5.2:3340871-3340890 | MS.gene21636:CDS | 55.0% | |
| CTGACTCTATTGCAGGGTCC+TGG | - | chr5.2:3341105-3341124 | MS.gene21636:intron | 55.0% | |
| GACACAAGGGAACCACACTG+TGG | + | chr5.2:3339895-3339914 | None:intergenic | 55.0% | |
| GGACCTGCTGGTGAATTTGG+AGG | - | chr5.2:3339646-3339665 | MS.gene21636:intron | 55.0% | |
| TCACCAGGAGGACCACCAAA+GGG | + | chr5.2:3339462-3339481 | None:intergenic | 55.0% | |
| TGCGCCTCCTCTCTCAATCT+GGG | + | chr5.2:3340559-3340578 | None:intergenic | 55.0% | |
| TGTTGCTCGGCCCTACAAGT+TGG | - | chr5.2:3340914-3340933 | MS.gene21636:CDS | 55.0% | |
| TTGCGCCTCCTCTCTCAATC+TGG | + | chr5.2:3340560-3340579 | None:intergenic | 55.0% | |
| ! | CCGGTTGCTGTTCAGGTGAT+CGG | + | chr5.2:3340874-3340893 | None:intergenic | 55.0% |
| ! | CCGGTTGTTGTTCGTGTCAC+GGG | - | chr5.2:3340890-3340909 | MS.gene21636:CDS | 55.0% |
| ! | CGGTTGCTGTTCAGGTGATC+GGG | + | chr5.2:3340873-3340892 | None:intergenic | 55.0% |
| ! | TCGTGTCACGGGTTGTTGCT+CGG | - | chr5.2:3340901-3340920 | MS.gene21636:CDS | 55.0% |
| !! | GATAGGGTTGAGCGTCGGAT+GGG | - | chr5.2:3340203-3340222 | MS.gene21636:intron | 55.0% |
| !! | TGATAGGGTTGAGCGTCGGA+TGG | - | chr5.2:3340202-3340221 | MS.gene21636:intron | 55.0% |
| !!! | GTTTTGGAGGGTCTCGGCTA+GGG | - | chr5.2:3340293-3340312 | MS.gene21636:intron | 55.0% |
| AAGCCAGCTGGAAGGCCCTT+TGG | - | chr5.2:3339444-3339463 | MS.gene21636:intron | 60.0% | |
| AGCAGGCTAAGCCAGCTGGA+AGG | - | chr5.2:3339436-3339455 | MS.gene21636:intron | 60.0% | |
| CCTGGTGGTAGACCTGGCTT+CGG | - | chr5.2:3341123-3341142 | MS.gene21636:intron | 60.0% | |
| CGGGCCTGAACTTGCCATGA+TGG | - | chr5.2:3340228-3340247 | MS.gene21636:intron | 60.0% | |
| GGCCTCCACGGTATCCATCA+CGG | + | chr5.2:3339621-3339640 | None:intergenic | 60.0% | |
| GGGCAGAATTGGGCGGTGAT+CGG | + | chr5.2:3340260-3340279 | None:intergenic | 60.0% | |
| GTGGAGCTCCAGCTGACTAC+AGG | - | chr5.2:3339677-3339696 | MS.gene21636:intron | 60.0% | |
| TACCTAGGGCGATCACCAGG+AGG | + | chr5.2:3339474-3339493 | None:intergenic | 60.0% | |
| !! | GACCGTGATGGATACCGTGG+AGG | - | chr5.2:3339616-3339635 | MS.gene21636:intron | 60.0% |
| !! | GGTCGTGGTTCTGGTGGCTT+TGG | - | chr5.2:3341144-3341163 | MS.gene21636:intron | 60.0% |
| !! | GGTGACCGTGATGGATACCG+TGG | - | chr5.2:3339613-3339632 | MS.gene21636:intron | 60.0% |
| !! | GGTTGAGCGTCGGATGGGTT+CGG | - | chr5.2:3340208-3340227 | MS.gene21636:intron | 60.0% |
| !! | GTTGAGCGTCGGATGGGTTC+GGG | - | chr5.2:3340209-3340228 | MS.gene21636:intron | 60.0% |
| !!! | GGTTTTGGAGGGTCTCGGCT+AGG | - | chr5.2:3340292-3340311 | MS.gene21636:intron | 60.0% |
| CAGGGTCCTGGTGGTAGACC+TGG | - | chr5.2:3341117-3341136 | MS.gene21636:intron | 65.0% | |
| CAGGTCCTCTTGGGCCTCCA+CGG | + | chr5.2:3339633-3339652 | None:intergenic | 65.0% | |
| CCACCAAAGGGCCTTCCAGC+TGG | + | chr5.2:3339450-3339469 | None:intergenic | 65.0% | |
| CCAGAACCACGACCGAAGCC+AGG | + | chr5.2:3341138-3341157 | None:intergenic | 65.0% | |
| CCAGCTGGAAGGCCCTTTGG+TGG | - | chr5.2:3339447-3339466 | MS.gene21636:intron | 65.0% | |
| CCGAAGCCAGGTCTACCACC+AGG | + | chr5.2:3341126-3341145 | None:intergenic | 65.0% | |
| CCTGGCTTCGGTCGTGGTTC+TGG | - | chr5.2:3341135-3341154 | MS.gene21636:intron | 65.0% | |
| GGATACCGTGGAGGCCCAAG+AGG | - | chr5.2:3339625-3339644 | MS.gene21636:intron | 65.0% | |
| GGTAGACCTGGCTTCGGTCG+TGG | - | chr5.2:3341129-3341148 | MS.gene21636:intron | 65.0% | |
| GTCCTCCTGGTGATCGCCCT+AGG | - | chr5.2:3339469-3339488 | MS.gene21636:intron | 65.0% | |
| ! | AGGCCCTTTGGTGGTCCTCC+TGG | - | chr5.2:3339456-3339475 | MS.gene21636:intron | 65.0% |
| !! | GGCTTCGGTCGTGGTTCTGG+TGG | - | chr5.2:3341138-3341157 | MS.gene21636:intron | 65.0% |
| CGGGCGGGTGTGTCCACAAC+TGG | - | chr5.2:3340759-3340778 | MS.gene21636:CDS | 70.0% | |
| GGAGGCCCAAGAGGACCTGC+TGG | - | chr5.2:3339634-3339653 | MS.gene21636:intron | 70.0% | |
| GGAGGGTCTCGGCTAGGGCT+GGG | - | chr5.2:3340298-3340317 | MS.gene21636:intron | 70.0% | |
| TGGAGGGTCTCGGCTAGGGC+TGG | - | chr5.2:3340297-3340316 | MS.gene21636:intron | 70.0% | |
| ! | TAGGGCTGGGCGGGTGGGTT+GGG | - | chr5.2:3340311-3340330 | MS.gene21636:intron | 70.0% |
| CTAGGGCTGGGCGGGTGGGT+TGG | - | chr5.2:3340310-3340329 | MS.gene21636:intron | 75.0% | |
| GGGTCTCGGCTAGGGCTGGG+CGG | - | chr5.2:3340301-3340320 | MS.gene21636:intron | 75.0% | |
| GGTCTCGGCTAGGGCTGGGC+GGG | - | chr5.2:3340302-3340321 | MS.gene21636:intron | 75.0% | |
| TCGGCTAGGGCTGGGCGGGT+GGG | - | chr5.2:3340306-3340325 | MS.gene21636:intron | 75.0% | |
| ! | CTCGGCTAGGGCTGGGCGGG+TGG | - | chr5.2:3340305-3340324 | MS.gene21636:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 3338975 | 3341194 | 3338975 | ID=MS.gene21636 |
| chr5.2 | mRNA | 3338975 | 3341194 | 3338975 | ID=MS.gene21636.t1;Parent=MS.gene21636 |
| chr5.2 | exon | 3341192 | 3341194 | 3341192 | ID=MS.gene21636.t1.exon1;Parent=MS.gene21636.t1 |
| chr5.2 | CDS | 3341192 | 3341194 | 3341192 | ID=cds.MS.gene21636.t1;Parent=MS.gene21636.t1 |
| chr5.2 | exon | 3341047 | 3341095 | 3341047 | ID=MS.gene21636.t1.exon2;Parent=MS.gene21636.t1 |
| chr5.2 | CDS | 3341047 | 3341095 | 3341047 | ID=cds.MS.gene21636.t1;Parent=MS.gene21636.t1 |
| chr5.2 | exon | 3340679 | 3340958 | 3340679 | ID=MS.gene21636.t1.exon3;Parent=MS.gene21636.t1 |
| chr5.2 | CDS | 3340679 | 3340958 | 3340679 | ID=cds.MS.gene21636.t1;Parent=MS.gene21636.t1 |
| chr5.2 | exon | 3340458 | 3340593 | 3340458 | ID=MS.gene21636.t1.exon4;Parent=MS.gene21636.t1 |
| chr5.2 | CDS | 3340458 | 3340593 | 3340458 | ID=cds.MS.gene21636.t1;Parent=MS.gene21636.t1 |
| chr5.2 | exon | 3338975 | 3339049 | 3338975 | ID=MS.gene21636.t1.exon5;Parent=MS.gene21636.t1 |
| chr5.2 | CDS | 3338975 | 3339049 | 3338975 | ID=cds.MS.gene21636.t1;Parent=MS.gene21636.t1 |
| Gene Sequence |
| Protein sequence |
