Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09056.t1 | XP_003629768.1 | 100 | 45 | 0 | 0 | 37 | 81 | 37 | 81 | 8.60E-15 | 89.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09056.t1 | P38389 | 87.8 | 41 | 5 | 0 | 39 | 79 | 42 | 82 | 3.1e-13 | 75.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09056.t1 | G7LJD9 | 100.0 | 45 | 0 | 0 | 37 | 81 | 37 | 81 | 6.2e-15 | 89.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050290 | MS.gene09056 | 0.804211 | 2.41E-49 | -1.69E-46 |
MS.gene050320 | MS.gene09056 | 0.8067 | 7.24E-50 | -1.69E-46 |
MS.gene050752 | MS.gene09056 | 0.835884 | 1.29E-56 | -1.69E-46 |
MS.gene050955 | MS.gene09056 | 0.836162 | 1.10E-56 | -1.69E-46 |
MS.gene051756 | MS.gene09056 | 0.807006 | 6.24E-50 | -1.69E-46 |
MS.gene051903 | MS.gene09056 | 0.828715 | 7.71E-55 | -1.69E-46 |
MS.gene053952 | MS.gene09056 | 0.813181 | 2.91E-51 | -1.69E-46 |
MS.gene054403 | MS.gene09056 | 0.838002 | 3.72E-57 | -1.69E-46 |
MS.gene057130 | MS.gene09056 | 0.804083 | 2.56E-49 | -1.69E-46 |
MS.gene058245 | MS.gene09056 | 0.811027 | 8.59E-51 | -1.69E-46 |
MS.gene060126 | MS.gene09056 | 0.814913 | 1.21E-51 | -1.69E-46 |
MS.gene061145 | MS.gene09056 | 0.807745 | 4.35E-50 | -1.69E-46 |
MS.gene06118 | MS.gene09056 | 0.811343 | 7.34E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09056.t1 | MTR_8g086330 | 100.000 | 81 | 0 | 0 | 1 | 81 | 1 | 81 | 2.06e-53 | 160 |
MS.gene09056.t1 | MTR_4g028080 | 92.405 | 79 | 6 | 0 | 1 | 79 | 1 | 79 | 6.38e-40 | 126 |
MS.gene09056.t1 | MTR_1g082400 | 60.000 | 80 | 24 | 1 | 5 | 76 | 21 | 100 | 8.81e-25 | 89.4 |
MS.gene09056.t1 | MTR_2g093770 | 60.976 | 82 | 26 | 1 | 4 | 79 | 21 | 102 | 4.51e-24 | 87.4 |
MS.gene09056.t1 | MTR_5g066500 | 66.071 | 56 | 16 | 1 | 9 | 64 | 56 | 108 | 8.34e-16 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09056.t1 | AT3G60540 | 80.769 | 78 | 14 | 1 | 4 | 80 | 3 | 80 | 3.30e-34 | 112 |
MS.gene09056.t1 | AT3G60540 | 80.769 | 78 | 14 | 1 | 4 | 80 | 3 | 80 | 3.30e-34 | 112 |
MS.gene09056.t1 | AT3G60540 | 80.769 | 78 | 14 | 1 | 4 | 80 | 3 | 80 | 3.30e-34 | 112 |
MS.gene09056.t1 | AT2G45070 | 82.500 | 80 | 10 | 1 | 4 | 79 | 3 | 82 | 3.40e-32 | 107 |
MS.gene09056.t1 | AT2G45070 | 82.500 | 80 | 10 | 1 | 4 | 79 | 3 | 82 | 3.40e-32 | 107 |
MS.gene09056.t1 | AT2G45070 | 82.500 | 80 | 10 | 1 | 4 | 79 | 3 | 82 | 3.40e-32 | 107 |
MS.gene09056.t1 | AT2G45070 | 82.500 | 80 | 10 | 1 | 4 | 79 | 3 | 82 | 3.40e-32 | 107 |
MS.gene09056.t1 | AT5G60460 | 58.621 | 87 | 28 | 1 | 2 | 80 | 19 | 105 | 3.23e-23 | 85.5 |
MS.gene09056.t1 | AT5G60460 | 58.621 | 87 | 28 | 1 | 2 | 80 | 19 | 105 | 3.23e-23 | 85.5 |
Find 31 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCTGCTGCACTTCCTCTTT+GGG | 0.153735 | 4.4:-13834564 | None:intergenic |
TCGCTGCTGCACTTCCTCTT+TGG | 0.195557 | 4.4:-13834565 | None:intergenic |
ACACCCGGTGGTGGGGCATC+TGG | 0.275877 | 4.4:+13834611 | MS.gene09056:CDS |
GGGGCATCTGGAGGAGCTGC+AGG | 0.292492 | 4.4:+13834623 | MS.gene09056:CDS |
CTCATCACAAGAACCACATT+TGG | 0.388681 | 4.4:-13834695 | None:intergenic |
TCATCACAAGAACCACATTT+GGG | 0.392066 | 4.4:-13834694 | None:intergenic |
GTGTTTCAGAAAATGGCTTC+AGG | 0.402843 | 4.4:+13834530 | None:intergenic |
GTTGCCATCCTTCATGTGAT+TGG | 0.409593 | 4.4:+13834737 | MS.gene09056:CDS |
TCCTCCAGATGCCCCACCAC+CGG | 0.423552 | 4.4:-13834615 | None:intergenic |
GGGCATCTGGAGGAGCTGCA+GGG | 0.495153 | 4.4:+13834624 | MS.gene09056:CDS |
CGACTGCAAGCATGAGAAGA+AGG | 0.502053 | 4.4:+13834585 | MS.gene09056:CDS |
TTTGGGGAGATCTTCAGTCC+AGG | 0.507378 | 4.4:-13834677 | None:intergenic |
AGAAGGAAGACACCCGGTGG+TGG | 0.513757 | 4.4:+13834602 | MS.gene09056:CDS |
CCCGGTGGTGGGGCATCTGG+AGG | 0.518412 | 4.4:+13834614 | MS.gene09056:CDS |
CCTCCAGATGCCCCACCACC+GGG | 0.523682 | 4.4:-13834614 | None:intergenic |
GCTGCTGCACTTCCTCTTTG+GGG | 0.527227 | 4.4:-13834563 | None:intergenic |
GTGGTTCTTGTGATGAGCAT+TGG | 0.535637 | 4.4:+13834701 | MS.gene09056:CDS |
GAAGGAAGACACCCGGTGGT+GGG | 0.541352 | 4.4:+13834603 | MS.gene09056:CDS |
TGGCAAGTTGTACTTGCGTA+AGG | 0.559707 | 4.4:+13834757 | MS.gene09056:CDS |
TTGGGGAGATCTTCAGTCCA+GGG | 0.561617 | 4.4:-13834676 | None:intergenic |
GGTGGAGCAGCTCCCCAAAG+AGG | 0.584751 | 4.4:+13834551 | MS.gene09056:CDS |
CAAGTTGTACTTGCGTAAGG+AGG | 0.591387 | 4.4:+13834760 | MS.gene09056:CDS |
AAGGAAGACACCCGGTGGTG+GGG | 0.594885 | 4.4:+13834604 | MS.gene09056:CDS |
TTTCAGAAAATGGCTTCAGG+TGG | 0.611619 | 4.4:+13834533 | None:intergenic |
ACAACTTGCCAATCACATGA+AGG | 0.616873 | 4.4:-13834745 | None:intergenic |
CTTGCCAATCACATGAAGGA+TGG | 0.620482 | 4.4:-13834741 | None:intergenic |
ACTGAAGATCTCCCCAAATG+TGG | 0.630953 | 4.4:+13834682 | MS.gene09056:CDS |
TGGGGAGATCTTCAGTCCAG+GGG | 0.635342 | 4.4:-13834675 | None:intergenic |
ATGAGAAGAAGGAAGACACC+CGG | 0.674561 | 4.4:+13834596 | MS.gene09056:CDS |
CATCACAAGAACCACATTTG+GGG | 0.690194 | 4.4:-13834693 | None:intergenic |
AGAAGAAGGAAGACACCCGG+TGG | 0.765392 | 4.4:+13834599 | MS.gene09056:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
TCATCACAAGAACCACATTT+GGG | - | chr4.4:13834697-13834716 | None:intergenic | 35.0% | |
ACAACTTGCCAATCACATGA+AGG | - | chr4.4:13834748-13834767 | None:intergenic | 40.0% | |
CATCACAAGAACCACATTTG+GGG | - | chr4.4:13834696-13834715 | None:intergenic | 40.0% | |
CTCATCACAAGAACCACATT+TGG | - | chr4.4:13834698-13834717 | None:intergenic | 40.0% | |
ACTGAAGATCTCCCCAAATG+TGG | + | chr4.4:13834682-13834701 | MS.gene09056:CDS | 45.0% | |
ATGAGAAGAAGGAAGACACC+CGG | + | chr4.4:13834596-13834615 | MS.gene09056:CDS | 45.0% | |
CAAGTTGTACTTGCGTAAGG+AGG | + | chr4.4:13834760-13834779 | MS.gene09056:CDS | 45.0% | |
CTTGCCAATCACATGAAGGA+TGG | - | chr4.4:13834744-13834763 | None:intergenic | 45.0% | |
GTGGTTCTTGTGATGAGCAT+TGG | + | chr4.4:13834701-13834720 | MS.gene09056:CDS | 45.0% | |
GTTGCCATCCTTCATGTGAT+TGG | + | chr4.4:13834737-13834756 | MS.gene09056:CDS | 45.0% | |
TGGCAAGTTGTACTTGCGTA+AGG | + | chr4.4:13834757-13834776 | MS.gene09056:CDS | 45.0% | |
!! | TTTTACACTGATGATGCCCC+TGG | + | chr4.4:13834659-13834678 | MS.gene09056:CDS | 45.0% |
CGACTGCAAGCATGAGAAGA+AGG | + | chr4.4:13834585-13834604 | MS.gene09056:CDS | 50.0% | |
TTGGGGAGATCTTCAGTCCA+GGG | - | chr4.4:13834679-13834698 | None:intergenic | 50.0% | |
TTTGGGGAGATCTTCAGTCC+AGG | - | chr4.4:13834680-13834699 | None:intergenic | 50.0% | |
AGAAGAAGGAAGACACCCGG+TGG | + | chr4.4:13834599-13834618 | MS.gene09056:CDS | 55.0% | |
CGCTGCTGCACTTCCTCTTT+GGG | - | chr4.4:13834567-13834586 | None:intergenic | 55.0% | |
GCTGCTGCACTTCCTCTTTG+GGG | - | chr4.4:13834566-13834585 | None:intergenic | 55.0% | |
TCGCTGCTGCACTTCCTCTT+TGG | - | chr4.4:13834568-13834587 | None:intergenic | 55.0% | |
TGGGGAGATCTTCAGTCCAG+GGG | - | chr4.4:13834678-13834697 | None:intergenic | 55.0% | |
AAGGAAGACACCCGGTGGTG+GGG | + | chr4.4:13834604-13834623 | MS.gene09056:CDS | 60.0% | |
AGAAGGAAGACACCCGGTGG+TGG | + | chr4.4:13834602-13834621 | MS.gene09056:CDS | 60.0% | |
GAAGGAAGACACCCGGTGGT+GGG | + | chr4.4:13834603-13834622 | MS.gene09056:CDS | 60.0% | |
GGGCATCTGGAGGAGCTGCA+GGG | + | chr4.4:13834624-13834643 | MS.gene09056:CDS | 65.0% | |
GGTGGAGCAGCTCCCCAAAG+AGG | + | chr4.4:13834551-13834570 | MS.gene09056:CDS | 65.0% | |
TCCTCCAGATGCCCCACCAC+CGG | - | chr4.4:13834618-13834637 | None:intergenic | 65.0% | |
CCTCCAGATGCCCCACCACC+GGG | - | chr4.4:13834617-13834636 | None:intergenic | 70.0% | |
! | GGGGCATCTGGAGGAGCTGC+AGG | + | chr4.4:13834623-13834642 | MS.gene09056:CDS | 70.0% |
!! | ACACCCGGTGGTGGGGCATC+TGG | + | chr4.4:13834611-13834630 | MS.gene09056:CDS | 70.0% |
!! | CCCGGTGGTGGGGCATCTGG+AGG | + | chr4.4:13834614-13834633 | MS.gene09056:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 13834542 | 13834787 | 13834542 | ID=MS.gene09056 |
chr4.4 | mRNA | 13834542 | 13834787 | 13834542 | ID=MS.gene09056.t1;Parent=MS.gene09056 |
chr4.4 | exon | 13834542 | 13834787 | 13834542 | ID=MS.gene09056.t1.exon1;Parent=MS.gene09056.t1 |
chr4.4 | CDS | 13834542 | 13834787 | 13834542 | ID=cds.MS.gene09056.t1;Parent=MS.gene09056.t1 |
Gene Sequence |
Protein sequence |