AlfalfaGEDB | MS.gene09056

M. sativa cultivar XinJiangDaYe / MS.gene09056

KEGG: K09481
GO: GO:0005575 GO:0005784 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0032991 GO:0033036 GO:0042886 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0071256 GO:0071702 GO:0071705 GO:0098796
PFAM: PF03911.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09056.t1	XP_003629768.1	100	45	0	0	37	81	37	81	8.60E-15	89.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09056.t1	P38389	87.8	41	5	0	39	79	42	82	3.1e-13	75.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09056.t1	G7LJD9	100.0	45	0	0	37	81	37	81	6.2e-15	89.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050290	MS.gene09056	0.804211	2.41E-49	-1.69E-46
MS.gene050320	MS.gene09056	0.8067	7.24E-50	-1.69E-46
MS.gene050752	MS.gene09056	0.835884	1.29E-56	-1.69E-46
MS.gene050955	MS.gene09056	0.836162	1.10E-56	-1.69E-46
MS.gene051756	MS.gene09056	0.807006	6.24E-50	-1.69E-46
MS.gene051903	MS.gene09056	0.828715	7.71E-55	-1.69E-46
MS.gene053952	MS.gene09056	0.813181	2.91E-51	-1.69E-46
MS.gene054403	MS.gene09056	0.838002	3.72E-57	-1.69E-46
MS.gene057130	MS.gene09056	0.804083	2.56E-49	-1.69E-46
MS.gene058245	MS.gene09056	0.811027	8.59E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09056.t1	MTR_8g086330	100.000	81	0	0	1	81	1	81	2.06e-53	160
MS.gene09056.t1	MTR_4g028080	92.405	79	6	0	1	79	1	79	6.38e-40	126
MS.gene09056.t1	MTR_1g082400	60.000	80	24	1	5	76	21	100	8.81e-25	89.4
MS.gene09056.t1	MTR_2g093770	60.976	82	26	1	4	79	21	102	4.51e-24	87.4
MS.gene09056.t1	MTR_5g066500	66.071	56	16	1	9	64	56	108	8.34e-16	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09056.t1	AT3G60540	80.769	78	14	1	4	80	3	80	3.30e-34	112
MS.gene09056.t1	AT3G60540	80.769	78	14	1	4	80	3	80	3.30e-34	112
MS.gene09056.t1	AT3G60540	80.769	78	14	1	4	80	3	80	3.30e-34	112
MS.gene09056.t1	AT2G45070	82.500	80	10	1	4	79	3	82	3.40e-32	107
MS.gene09056.t1	AT2G45070	82.500	80	10	1	4	79	3	82	3.40e-32	107
MS.gene09056.t1	AT2G45070	82.500	80	10	1	4	79	3	82	3.40e-32	107
MS.gene09056.t1	AT2G45070	82.500	80	10	1	4	79	3	82	3.40e-32	107
MS.gene09056.t1	AT5G60460	58.621	87	28	1	2	80	19	105	3.23e-23	85.5
MS.gene09056.t1	AT5G60460	58.621	87	28	1	2	80	19	105	3.23e-23	85.5

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Find 31 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAGACACCCGGTGGTG+GGG	0.594885	4.4:+13834604	MS.gene09056:CDS
ACAACTTGCCAATCACATGA+AGG	0.616873	4.4:-13834745	None:intergenic
ACACCCGGTGGTGGGGCATC+TGG	0.275877	4.4:+13834611	MS.gene09056:CDS
ACTGAAGATCTCCCCAAATG+TGG	0.630953	4.4:+13834682	MS.gene09056:CDS
AGAAGAAGGAAGACACCCGG+TGG	0.765392	4.4:+13834599	MS.gene09056:CDS
AGAAGGAAGACACCCGGTGG+TGG	0.513757	4.4:+13834602	MS.gene09056:CDS
ATGAGAAGAAGGAAGACACC+CGG	0.674561	4.4:+13834596	MS.gene09056:CDS
CAAGTTGTACTTGCGTAAGG+AGG	0.591387	4.4:+13834760	MS.gene09056:CDS
CATCACAAGAACCACATTTG+GGG	0.690194	4.4:-13834693	None:intergenic
CCCGGTGGTGGGGCATCTGG+AGG	0.518412	4.4:+13834614	MS.gene09056:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATCACAAGAACCACATTT+GGG	-	chr4.4:13834697-13834716	None:intergenic	35.0%
ACAACTTGCCAATCACATGA+AGG	-	chr4.4:13834748-13834767	None:intergenic	40.0%
CATCACAAGAACCACATTTG+GGG	-	chr4.4:13834696-13834715	None:intergenic	40.0%
CTCATCACAAGAACCACATT+TGG	-	chr4.4:13834698-13834717	None:intergenic	40.0%
ACTGAAGATCTCCCCAAATG+TGG	+	chr4.4:13834682-13834701	MS.gene09056:CDS	45.0%
ATGAGAAGAAGGAAGACACC+CGG	+	chr4.4:13834596-13834615	MS.gene09056:CDS	45.0%
CAAGTTGTACTTGCGTAAGG+AGG	+	chr4.4:13834760-13834779	MS.gene09056:CDS	45.0%
CTTGCCAATCACATGAAGGA+TGG	-	chr4.4:13834744-13834763	None:intergenic	45.0%
GTGGTTCTTGTGATGAGCAT+TGG	+	chr4.4:13834701-13834720	MS.gene09056:CDS	45.0%
GTTGCCATCCTTCATGTGAT+TGG	+	chr4.4:13834737-13834756	MS.gene09056:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	13834542	13834787	13834542	ID=MS.gene09056
chr4.4	mRNA	13834542	13834787	13834542	ID=MS.gene09056.t1;Parent=MS.gene09056
chr4.4	exon	13834542	13834787	13834542	ID=MS.gene09056.t1.exon1;Parent=MS.gene09056.t1
chr4.4	CDS	13834542	13834787	13834542	ID=cds.MS.gene09056.t1;Parent=MS.gene09056.t1

Gene Sequence	>MS.gene09056 ATGGCTTCAGGTGGAGCAGCTCCCCAAAGAGGAAGTGCAGCAGCGACTGCAAGCATGAGAAGAAGGAAGACACCCGGTGGTGGGGCATCTGGAGGAGCTGCAGGGACTATGCTTCAGTTTTACACTGATGATGCCCCTGGACTGAAGATCTCCCCAAATGTGGTTCTTGTGATGAGCATTGGCTTTATAGCATTTGTTGCCATCCTTCATGTGATTGGCAAGTTGTACTTGCGTAAGGAGGCTTAG
Protein sequence	>MS.gene09056.t1 MASGGAAPQRGSAAATASMRRRKTPGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVIGKLYLRKEA