Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060182.t1 | RHN74953.1 | 98.9 | 568 | 6 | 0 | 1 | 568 | 1 | 568 | 0.00E+00 | 1123.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060182.t1 | Q9FZ49 | 72.9 | 571 | 151 | 2 | 1 | 568 | 1 | 570 | 2.7e-249 | 862.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060182.t1 | A0A396JF94 | 98.9 | 568 | 6 | 0 | 1 | 568 | 1 | 568 | 0.0e+00 | 1123.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014310 | MS.gene060182 | PPI |
| MS.gene056676 | MS.gene060182 | PPI |
| MS.gene014312 | MS.gene060182 | PPI |
| MS.gene060182 | MS.gene069988 | PPI |
| MS.gene003786 | MS.gene060182 | PPI |
| MS.gene060182 | MS.gene45709 | PPI |
| MS.gene060182 | MS.gene064868 | PPI |
| MS.gene060182 | MS.gene66827 | PPI |
| MS.gene060182 | MS.gene50052 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060182.t1 | MTR_2g076680 | 98.768 | 568 | 7 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060182.t1 | AT1G16900 | 73.030 | 571 | 150 | 2 | 1 | 568 | 1 | 570 | 0.0 | 841 |
Find 117 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTTGCTGTTTCTGCTAT+TGG | 0.219264 | 2.3:-20487419 | MS.gene060182:CDS |
| AAATTCAAACAGGCATTTAT+TGG | 0.223315 | 2.3:-20487329 | MS.gene060182:CDS |
| TGTTCTTGCTATGCTGTTCT+TGG | 0.229117 | 2.3:-20486494 | MS.gene060182:CDS |
| CCACCTAGGGTAGAATTAAA+TGG | 0.242901 | 2.3:+20483759 | None:intergenic |
| TATGCTGTGAGATTCTTTCT+TGG | 0.247470 | 2.3:-20487863 | MS.gene060182:CDS |
| ACTATAACTATTATGGAAAA+TGG | 0.250286 | 2.3:-20486639 | MS.gene060182:CDS |
| CGAACTTGTCCCACAAAATC+TGG | 0.277414 | 2.3:+20483819 | None:intergenic |
| AACCACCGGCCTCAGAAATT+TGG | 0.286042 | 2.3:+20484977 | None:intergenic |
| TGATATCTCCTTTATACATT+TGG | 0.294318 | 2.3:-20486423 | MS.gene060182:CDS |
| GTTACTGACTATAACTATTA+TGG | 0.296108 | 2.3:-20486646 | MS.gene060182:CDS |
| TGGCTGGCCATTCTCAATCT+TGG | 0.306441 | 2.3:-20487387 | MS.gene060182:CDS |
| CCACTATTTCATGAAATAAA+AGG | 0.307405 | 2.3:+20488030 | None:intergenic |
| CCGGTTAAATAGAATCATTT+TGG | 0.308756 | 2.3:+20482025 | None:intergenic |
| TTCATCTTTACCGTCCGATT+TGG | 0.317857 | 2.3:+20490092 | None:intergenic |
| GTAAAGATGAAGGGTTAAAA+TGG | 0.322168 | 2.3:-20490080 | MS.gene060182:CDS |
| CGATGGATTGATGATGGTTT+CGG | 0.330104 | 2.3:-20483798 | MS.gene060182:CDS |
| GTATGCAATCTCTCTTGCTT+CGG | 0.332002 | 2.3:-20487471 | MS.gene060182:CDS |
| ATGTTCTTGTTGTTAAAGTA+TGG | 0.342295 | 2.3:+20483720 | None:intergenic |
| TATTGCTGCATTACCATATC+TGG | 0.343713 | 2.3:-20482146 | MS.gene060182:CDS |
| GGTTTCAAACTTGGGAATAT+AGG | 0.344219 | 2.3:-20489936 | MS.gene060182:intron |
| TATGCAATCTCTCTTGCTTC+GGG | 0.358298 | 2.3:-20487470 | MS.gene060182:CDS |
| TCTGCTATTGGTGTGATACT+TGG | 0.358995 | 2.3:-20487407 | MS.gene060182:CDS |
| GTAGCTATTTCAAGAAAGTA+TGG | 0.360159 | 2.3:-20487806 | MS.gene060182:CDS |
| CGACCAGCTTTGTGGGTGTT+TGG | 0.360996 | 2.3:-20488005 | MS.gene060182:CDS |
| CAGGTTCTGTACTTTGTGTT+GGG | 0.364034 | 2.3:-20483878 | MS.gene060182:CDS |
| TGAGAGCGTCTTCGTCTTGT+TGG | 0.369425 | 2.3:+20490171 | None:intergenic |
| ATAAAACTGGGTTTCAAACT+TGG | 0.375504 | 2.3:-20489945 | MS.gene060182:CDS |
| AAAATCTTGTAAATCTCAAT+AGG | 0.384616 | 2.3:+20484891 | None:intergenic |
| GAATATTTCTTCTTAGCAAT+AGG | 0.395061 | 2.3:+20486463 | None:intergenic |
| ACACAAATAAGTGGATATAC+TGG | 0.407458 | 2.3:+20485181 | None:intergenic |
| CCGAACCTTTCTTCTTTATG+TGG | 0.413167 | 2.3:+20486379 | None:intergenic |
| TCAGGTTCTGTACTTTGTGT+TGG | 0.413900 | 2.3:-20483879 | MS.gene060182:intron |
| AAAGCCAGCCAAATGTATAA+AGG | 0.418152 | 2.3:+20486415 | None:intergenic |
| AGCTTTCACCAGCTTTGTAT+AGG | 0.420983 | 2.3:-20482117 | MS.gene060182:CDS |
| GTTCTTGCTATGCTGTTCTT+GGG | 0.423743 | 2.3:-20486493 | MS.gene060182:CDS |
| TACTTGTCACGGAAAAGATC+AGG | 0.428030 | 2.3:+20485130 | None:intergenic |
| TACTTTGTGTTGGGAGTGAA+TGG | 0.433620 | 2.3:-20483869 | MS.gene060182:CDS |
| CAAGTTCGATGGATTGATGA+TGG | 0.437641 | 2.3:-20483804 | MS.gene060182:CDS |
| ATCTCCTTTATACATTTGGC+TGG | 0.441016 | 2.3:-20486419 | MS.gene060182:CDS |
| CTCTCAGCCGTCGGATCCAC+CGG | 0.449738 | 2.3:-20490154 | MS.gene060182:CDS |
| GCAGTTCACAGTTTGCTCTT+CGG | 0.450028 | 2.3:-20488064 | MS.gene060182:intron |
| TCTATATATAAAATTCAAAC+AGG | 0.456683 | 2.3:-20487339 | MS.gene060182:CDS |
| GAAAGCTCCCTATCCAGATA+TGG | 0.459908 | 2.3:+20482133 | None:intergenic |
| CACCTAGGGTAGAATTAAAT+GGG | 0.461526 | 2.3:+20483760 | None:intergenic |
| TAGTGGCTCGACCAGCTTTG+TGG | 0.464263 | 2.3:-20488013 | MS.gene060182:CDS |
| GGCGGTGAAAGTCATCTGTA+TGG | 0.465884 | 2.3:-20486574 | MS.gene060182:CDS |
| ATAAGTCACTTCCACGGGTC+AGG | 0.467445 | 2.3:+20482261 | None:intergenic |
| GATATCACAATAAGTAGGTC+TGG | 0.468052 | 2.3:+20486439 | None:intergenic |
| TTCCCATTTAATTCTACCCT+AGG | 0.470224 | 2.3:-20483762 | MS.gene060182:CDS |
| GCTCGACAAAGCGTCCAAAT+CGG | 0.474342 | 2.3:-20490106 | MS.gene060182:CDS |
| TGCAGCCACATAAAGAAGAA+AGG | 0.475976 | 2.3:-20486384 | MS.gene060182:intron |
| CTGCATTACCATATCTGGAT+AGG | 0.477599 | 2.3:-20482141 | MS.gene060182:CDS |
| TATAGAGAATAAAGTGTCAC+TGG | 0.484919 | 2.3:+20487356 | None:intergenic |
| TAAAGATGAAGGGTTAAAAT+GGG | 0.485417 | 2.3:-20490079 | MS.gene060182:CDS |
| AGTGGCTCGACCAGCTTTGT+GGG | 0.488898 | 2.3:-20488012 | MS.gene060182:CDS |
| GCATACATGGAAAACGAACT+TGG | 0.489829 | 2.3:+20487488 | None:intergenic |
| CTTCTAATATACAACGTAGC+TGG | 0.490932 | 2.3:-20486598 | MS.gene060182:CDS |
| AGCAAGAGAGATTGCATACA+TGG | 0.491027 | 2.3:+20487475 | None:intergenic |
| GTGCTGCAGCAGTCCCACCT+AGG | 0.491314 | 2.3:+20483745 | None:intergenic |
| TAAAACTGGGTTTCAAACTT+GGG | 0.494518 | 2.3:-20489944 | MS.gene060182:CDS |
| AAGTGCAGGCATCGATATCA+TGG | 0.494904 | 2.3:+20482315 | None:intergenic |
| CATTTAATTCTACCCTAGGT+GGG | 0.497811 | 2.3:-20483758 | MS.gene060182:CDS |
| AAATCGGACGGTAAAGATGA+AGG | 0.501810 | 2.3:-20490090 | MS.gene060182:CDS |
| CTATTGGTGTGATACTTGGC+TGG | 0.503293 | 2.3:-20487403 | MS.gene060182:CDS |
| TCAAACAGGCATTTATTGGT+GGG | 0.504596 | 2.3:-20487325 | MS.gene060182:CDS |
| TTCAAACAGGCATTTATTGG+TGG | 0.505934 | 2.3:-20487326 | MS.gene060182:CDS |
| TGACACTTCTTTAATAGTGA+AGG | 0.517173 | 2.3:-20485098 | MS.gene060182:intron |
| TCACTTCCACGGGTCAGGTA+AGG | 0.519854 | 2.3:+20482266 | None:intergenic |
| GAAGCAGCAACACAAATAAG+TGG | 0.523684 | 2.3:+20485172 | None:intergenic |
| CAGCTCGACGAGGAAAGTGC+AGG | 0.528901 | 2.3:+20482301 | None:intergenic |
| TGTAAATCTCAATAGGAGCT+TGG | 0.532733 | 2.3:+20484898 | None:intergenic |
| AGAAAAGCCAAGATTGAGAA+TGG | 0.534930 | 2.3:+20487380 | None:intergenic |
| CACCACGACGATGTAGCAAA+TGG | 0.535604 | 2.3:-20484864 | MS.gene060182:intron |
| CCATTTAATTCTACCCTAGG+TGG | 0.537784 | 2.3:-20483759 | MS.gene060182:CDS |
| CAAACAGGCATTTATTGGTG+GGG | 0.542191 | 2.3:-20487324 | MS.gene060182:CDS |
| TGCTGCAGCAGTCCCACCTA+GGG | 0.546607 | 2.3:+20483746 | None:intergenic |
| AAGGAGATATCACAATAAGT+AGG | 0.549912 | 2.3:+20486434 | None:intergenic |
| GATGAAGATGATCGCGCCGG+TGG | 0.549997 | 2.3:+20490138 | None:intergenic |
| TGCATTACCATATCTGGATA+GGG | 0.551101 | 2.3:-20482140 | MS.gene060182:CDS |
| GGTAGCCAAATTTCTGAGGC+CGG | 0.554678 | 2.3:-20484982 | MS.gene060182:CDS |
| TTCTTGTTGTTAAAGTATGG+TGG | 0.556667 | 2.3:+20483723 | None:intergenic |
| TCACCAAACACCCACAAAGC+TGG | 0.559084 | 2.3:+20488002 | None:intergenic |
| TAGGGTAGAATTAAATGGGA+AGG | 0.562334 | 2.3:+20483764 | None:intergenic |
| TTATAAAGAAGAAAATGAAG+AGG | 0.563612 | 2.3:+20489964 | None:intergenic |
| GAACTTGTCCCACAAAATCT+GGG | 0.564529 | 2.3:+20483820 | None:intergenic |
| CAAATGAATCATACTTGTCA+CGG | 0.566373 | 2.3:+20485119 | None:intergenic |
| GATCGCGCCGGTGGATCCGA+CGG | 0.567878 | 2.3:+20490147 | None:intergenic |
| AGAAAATGTACGAGCATGAG+AGG | 0.570665 | 2.3:+20484935 | None:intergenic |
| TAAGTGGATATACTGGATAG+AGG | 0.573634 | 2.3:+20485188 | None:intergenic |
| AATATAATGCTAAGAACCAC+CGG | 0.576125 | 2.3:+20484963 | None:intergenic |
| TCGTCGAGCTGCAGCTAAAG+CGG | 0.577826 | 2.3:-20482289 | MS.gene060182:CDS |
| ATATACAACGTAGCTGGAGG+CGG | 0.584749 | 2.3:-20486592 | MS.gene060182:CDS |
| TATTATTCATGATTGTGATG+AGG | 0.592268 | 2.3:-20490004 | MS.gene060182:CDS |
| TGTTGATAAGTCACTTCCAC+GGG | 0.592532 | 2.3:+20482256 | None:intergenic |
| GCGGTGAAAGTCATCTGTAT+GGG | 0.598420 | 2.3:-20486573 | MS.gene060182:CDS |
| AGGGTAGAATTAAATGGGAA+GGG | 0.598968 | 2.3:+20483765 | None:intergenic |
| AATCGGACGGTAAAGATGAA+GGG | 0.602496 | 2.3:-20490089 | MS.gene060182:CDS |
| ACTTGTCACGGAAAAGATCA+GGG | 0.607707 | 2.3:+20485131 | None:intergenic |
| TCTGCTTGATAAACATGCTG+CGG | 0.610372 | 2.3:-20487441 | MS.gene060182:CDS |
| ACGAAGACGCTCTCAGCCGT+CGG | 0.617524 | 2.3:-20490163 | MS.gene060182:CDS |
| AGTCATCTGTATGGGACCGA+AGG | 0.619316 | 2.3:-20486565 | MS.gene060182:CDS |
| CTAATATACAACGTAGCTGG+AGG | 0.620873 | 2.3:-20486595 | MS.gene060182:CDS |
| ATGTTGATAAGTCACTTCCA+CGG | 0.622509 | 2.3:+20482255 | None:intergenic |
| TGGATTGATGATGGTTTCGG+AGG | 0.624749 | 2.3:-20483795 | MS.gene060182:CDS |
| GCTTTAGCTGCAGCTCGACG+AGG | 0.634925 | 2.3:+20482291 | None:intergenic |
| AAGCGGCCTTACCTGACCCG+TGG | 0.635167 | 2.3:-20482272 | MS.gene060182:CDS |
| GACAAAGCGTCCAAATCGGA+CGG | 0.643344 | 2.3:-20490102 | MS.gene060182:CDS |
| AGCCAAATTTCTGAGGCCGG+TGG | 0.644696 | 2.3:-20484979 | MS.gene060182:CDS |
| TGCAGGTAGCCAAATTTCTG+AGG | 0.648461 | 2.3:-20484986 | MS.gene060182:intron |
| CACCATTTGCTACATCGTCG+TGG | 0.651585 | 2.3:+20484862 | None:intergenic |
| GCTATGCTGTGCTTAGCTAG+CGG | 0.659412 | 2.3:-20487758 | MS.gene060182:CDS |
| AAGAACAGTCTCAGTGACAA+CGG | 0.667152 | 2.3:+20487832 | None:intergenic |
| TGGAAGTGACTTATCAACAT+GGG | 0.672049 | 2.3:-20482252 | MS.gene060182:CDS |
| TAAGATGAAGATGATCGCGC+CGG | 0.674007 | 2.3:+20490135 | None:intergenic |
| GTGGAAGTGACTTATCAACA+TGG | 0.680036 | 2.3:-20482253 | MS.gene060182:CDS |
| ATACTTTAACAACAAGAACA+TGG | 0.681934 | 2.3:-20483718 | MS.gene060182:CDS |
| AAGTGACTTATCAACATGGG+AGG | 0.701076 | 2.3:-20482249 | MS.gene060182:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 20482039 | 20490208 | 20482039 | ID=MS.gene060182 |
| chr2.3 | mRNA | 20482039 | 20490208 | 20482039 | ID=MS.gene060182.t1;Parent=MS.gene060182 |
| chr2.3 | exon | 20489937 | 20490208 | 20489937 | ID=MS.gene060182.t1.exon1;Parent=MS.gene060182.t1 |
| chr2.3 | CDS | 20489937 | 20490208 | 20489937 | ID=cds.MS.gene060182.t1;Parent=MS.gene060182.t1 |
| chr2.3 | exon | 20487995 | 20488082 | 20487995 | ID=MS.gene060182.t1.exon2;Parent=MS.gene060182.t1 |
| chr2.3 | CDS | 20487995 | 20488082 | 20487995 | ID=cds.MS.gene060182.t1;Parent=MS.gene060182.t1 |
| chr2.3 | exon | 20487738 | 20487897 | 20487738 | ID=MS.gene060182.t1.exon3;Parent=MS.gene060182.t1 |
| chr2.3 | CDS | 20487738 | 20487897 | 20487738 | ID=cds.MS.gene060182.t1;Parent=MS.gene060182.t1 |
| chr2.3 | exon | 20487301 | 20487518 | 20487301 | ID=MS.gene060182.t1.exon4;Parent=MS.gene060182.t1 |
| chr2.3 | CDS | 20487301 | 20487518 | 20487301 | ID=cds.MS.gene060182.t1;Parent=MS.gene060182.t1 |
| chr2.3 | exon | 20486385 | 20486680 | 20486385 | ID=MS.gene060182.t1.exon5;Parent=MS.gene060182.t1 |
| chr2.3 | CDS | 20486385 | 20486680 | 20486385 | ID=cds.MS.gene060182.t1;Parent=MS.gene060182.t1 |
| chr2.3 | exon | 20485099 | 20485213 | 20485099 | ID=MS.gene060182.t1.exon6;Parent=MS.gene060182.t1 |
| chr2.3 | CDS | 20485099 | 20485213 | 20485099 | ID=cds.MS.gene060182.t1;Parent=MS.gene060182.t1 |
| chr2.3 | exon | 20484865 | 20485003 | 20484865 | ID=MS.gene060182.t1.exon7;Parent=MS.gene060182.t1 |
| chr2.3 | CDS | 20484865 | 20485003 | 20484865 | ID=cds.MS.gene060182.t1;Parent=MS.gene060182.t1 |
| chr2.3 | exon | 20483701 | 20483897 | 20483701 | ID=MS.gene060182.t1.exon8;Parent=MS.gene060182.t1 |
| chr2.3 | CDS | 20483701 | 20483897 | 20483701 | ID=cds.MS.gene060182.t1;Parent=MS.gene060182.t1 |
| chr2.3 | exon | 20482250 | 20482339 | 20482250 | ID=MS.gene060182.t1.exon9;Parent=MS.gene060182.t1 |
| chr2.3 | CDS | 20482250 | 20482339 | 20482250 | ID=cds.MS.gene060182.t1;Parent=MS.gene060182.t1 |
| chr2.3 | exon | 20482039 | 20482170 | 20482039 | ID=MS.gene060182.t1.exon10;Parent=MS.gene060182.t1 |
| chr2.3 | CDS | 20482039 | 20482170 | 20482039 | ID=cds.MS.gene060182.t1;Parent=MS.gene060182.t1 |
| Gene Sequence |
| Protein sequence |