AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060201

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060201.t1 MTR_2g076210 93.460 367 24 0 1 367 1 367 0.0 724
MS.gene060201.t1 MTR_2g076200 75.269 372 83 5 1 367 4 371 0.0 564
MS.gene060201.t1 MTR_2g020280 48.056 360 153 8 37 367 39 393 2.58e-106 318
MS.gene060201.t1 MTR_5g020580 46.995 366 155 10 37 367 55 416 2.42e-102 308
MS.gene060201.t1 MTR_8g077195 46.174 379 167 7 22 367 38 412 8.68e-102 306
MS.gene060201.t1 MTR_1g088960 46.537 361 155 9 37 367 50 402 1.21e-97 296
MS.gene060201.t1 MTR_1g098790 44.330 388 154 11 35 367 51 431 8.61e-96 292
MS.gene060201.t1 MTR_1g022370 47.191 356 160 12 37 367 70 422 3.53e-93 285
MS.gene060201.t1 MTR_2g007930 42.744 379 164 9 37 367 54 427 4.13e-93 285
MS.gene060201.t1 MTR_2g020280 47.826 299 122 8 98 367 1 294 6.21e-80 247
MS.gene060201.t1 MTR_8g077620 43.539 356 172 10 25 360 40 386 3.29e-75 238
MS.gene060201.t1 MTR_8g077675 37.568 370 187 9 25 360 36 395 1.47e-66 216
MS.gene060201.t1 MTR_8g077640 39.067 343 139 11 34 357 92 383 3.66e-48 167
MS.gene060201.t1 MTR_8g077650 35.278 360 182 13 19 359 1 328 8.82e-46 160
MS.gene060201.t1 MTR_1g023800 50.000 98 49 0 35 132 50 147 1.50e-26 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060201.t1 AT1G53320 63.021 384 120 7 1 367 1 379 7.36e-159 451
MS.gene060201.t1 AT2G47900 44.722 360 165 7 37 367 52 406 3.69e-102 307
MS.gene060201.t1 AT2G47900 44.722 360 165 7 37 367 52 406 3.69e-102 307
MS.gene060201.t1 AT2G47900 44.598 361 165 7 37 367 52 407 9.26e-102 306
MS.gene060201.t1 AT2G18280 46.307 352 168 5 34 367 45 393 7.54e-100 301
MS.gene060201.t1 AT2G18280 46.307 352 168 5 34 367 45 393 7.54e-100 301
MS.gene060201.t1 AT3G06380 45.580 362 164 9 31 367 27 380 4.75e-96 291
MS.gene060201.t1 AT1G25280 43.734 391 156 11 37 367 59 445 2.94e-94 288
MS.gene060201.t1 AT1G76900 40.394 406 164 10 35 367 55 455 2.72e-91 281
MS.gene060201.t1 AT1G76900 40.394 406 164 10 35 367 55 455 2.72e-91 281
MS.gene060201.t1 AT1G76900 40.394 406 164 10 35 367 55 455 2.72e-91 281
MS.gene060201.t1 AT5G18680 43.968 373 168 10 25 367 28 389 1.47e-89 275
MS.gene060201.t1 AT1G47270 44.258 357 169 10 33 367 40 388 2.67e-89 274
MS.gene060201.t1 AT1G47270 44.258 357 169 10 33 367 65 413 3.94e-89 274
MS.gene060201.t1 AT1G47270 44.258 357 169 10 33 367 64 412 4.17e-89 274
MS.gene060201.t1 AT1G43640 41.818 385 164 11 35 367 53 429 1.53e-86 268
MS.gene060201.t1 AT1G43640 41.779 371 156 11 49 367 1 363 7.25e-83 256
MS.gene060201.t1 AT3G06380 44.178 292 131 8 100 367 5 288 1.84e-69 219
MS.gene060201.t1 AT5G18680 43.478 299 130 8 98 367 9 297 2.95e-66 212
MS.gene060201.t1 AT1G25280 40.221 271 99 10 156 367 1 267 3.61e-50 169
MS.gene060201.t1 AT1G25280 40.221 271 99 10 156 367 1 267 3.61e-50 169
MS.gene060201.t1 AT1G61940 48.276 87 45 0 40 126 1 87 1.32e-22 96.3
MS.gene060201.t1 AT1G61940 49.180 61 31 0 40 100 1 61 1.09e-14 73.6

Find 92 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCACCACTGTGTTGTAAAT+TGG 0.184549 2.3:-20778121 MS.gene060201:CDS
CGGCTTGTTCTGTCATTTAA+TGG 0.192126 2.3:+20777467 None:intergenic
ATCATTCGCCTTGGACGTTT+TGG 0.253223 2.3:+20777353 None:intergenic
CTTTCCCTCCTGGTTGGCTT+TGG 0.277699 2.3:+20777099 None:intergenic
GTTCTTTACAGTGCATCTTA+TGG 0.294863 2.3:+20777267 None:intergenic
TCGCCAGCATTAACAGATAA+AGG 0.294918 2.3:-20777899 MS.gene060201:intron
ATGATATCCGCAAGAAGTTC+TGG 0.302123 2.3:+20778798 None:intergenic
TGTTCTGTCATTTAATGGTT+TGG 0.319298 2.3:+20777472 None:intergenic
TGGGGAAGGTCGCGTGGCCC+TGG 0.326133 2.3:+20778140 None:intergenic
GAACGCATGGAAGGCGGATA+AGG 0.334268 2.3:+20777004 None:intergenic
TCTTCATCTCCTTTCCCTCC+TGG 0.342544 2.3:+20777089 None:intergenic
AAAGAACATGCTACAAGTTC+TGG 0.347577 2.3:-20777251 MS.gene060201:CDS
TTTCCCTTCTTGTCTTAAAC+AGG 0.347974 2.3:-20778643 MS.gene060201:intron
GATATCTTCTAGCTGCTAAT+AGG 0.356446 2.3:+20777870 None:intergenic
GCCATTTGCTTAACTAGCTT+CGG 0.361202 2.3:-20776981 MS.gene060201:CDS
ATCTTACTGACAAGCCAGTT+TGG 0.393584 2.3:+20776956 None:intergenic
CGCCAGCATTAACAGATAAA+GGG 0.417908 2.3:-20777898 MS.gene060201:intron
AACTAGCTTCGGCACCAAAC+TGG 0.421298 2.3:-20776970 MS.gene060201:CDS
GTACTTACTTACATGGAGTA+AGG 0.424832 2.3:+20778063 None:intergenic
CATCTCCTTTCCCTCCTGGT+TGG 0.445642 2.3:+20777093 None:intergenic
AACGCATGGAAGGCGGATAA+GGG 0.450456 2.3:+20777005 None:intergenic
CTGTCATATCCTTTCTCTCA+TGG 0.452722 2.3:+20777162 None:intergenic
GTAGGGTCACCTTCTCTTAA+CGG 0.460650 2.3:-20778675 MS.gene060201:CDS
ACAATTTATGACGCCTCGGC+TGG 0.460766 2.3:-20777497 MS.gene060201:CDS
CCTGTCCTCCGATGCACTAT+CGG 0.461291 2.3:+20778842 None:intergenic
CTTGAACTTCCATGAGAGAA+AGG 0.465557 2.3:-20777171 MS.gene060201:CDS
CAAGGAAGTAATGCTTATGT+TGG 0.475540 2.3:-20777794 MS.gene060201:CDS
CATCGGAGGACAGGACTGAT+TGG 0.480082 2.3:-20778833 MS.gene060201:CDS
CAAAGCCAACCAGGAGGGAA+AGG 0.481638 2.3:-20777098 MS.gene060201:CDS
TATTAGCAGCTAGAAGATAT+CGG 0.489255 2.3:-20777868 MS.gene060201:CDS
CTTGTGCCTGCGTTTGCAAA+CGG 0.489375 2.3:-20778722 MS.gene060201:CDS
CCGATAGTGCATCGGAGGAC+AGG 0.502831 2.3:-20778842 MS.gene060201:CDS
GCCGAAGCTAGTTAAGCAAA+TGG 0.503920 2.3:+20776980 None:intergenic
CCTGCTGGTAACATCGAGGC+AGG 0.504867 2.3:-20777410 MS.gene060201:CDS
CCAATTTACAACACAGTGGT+GGG 0.506056 2.3:+20778121 None:intergenic
ACGATGCGGCCATTGTTCTC+CGG 0.508756 2.3:+20778758 None:intergenic
AGAGAGCAAATCATTCGCCT+TGG 0.519881 2.3:+20777344 None:intergenic
CAGATACTTCAACAATGCTC+AGG 0.525873 2.3:-20778892 MS.gene060201:CDS
CTTTCGCATATTGATGAGGC+GGG 0.526354 2.3:+20777314 None:intergenic
ATCAGTGAAGAACTTTCAGC+TGG 0.527624 2.3:-20777135 MS.gene060201:CDS
ATGCTTATGTTGGCAAGCTA+AGG 0.535171 2.3:-20777784 MS.gene060201:intron
TCCAATTTACAACACAGTGG+TGG 0.539488 2.3:+20778120 None:intergenic
ATGGAGTAAGGGCAAGATAG+AGG 0.540432 2.3:+20778075 None:intergenic
AGGACCTGTTTAAGACAAGA+AGG 0.544045 2.3:+20778639 None:intergenic
CGCAAGAAGTTCTGGAAGCA+TGG 0.545732 2.3:+20778806 None:intergenic
ATAAGTCCTCAAGTTCCTGC+TGG 0.547760 2.3:-20777425 MS.gene060201:CDS
GCTCAGGCTCTCAATGATAC+CGG 0.547995 2.3:-20778876 MS.gene060201:CDS
ATATCACACGTGAGGTCGTA+GGG 0.551715 2.3:-20778692 MS.gene060201:CDS
GGAACGAGCAATTAGAGTGC+TGG 0.557590 2.3:-20777196 MS.gene060201:CDS
TTAAGCAAATGGCGAACGCA+TGG 0.557939 2.3:+20776991 None:intergenic
TAATGGTTTGGCACCAGCCG+AGG 0.558028 2.3:+20777484 None:intergenic
CTTCACAATTTATGACGCCT+CGG 0.560452 2.3:-20777501 MS.gene060201:CDS
GGCAAGATAGAGGTAAAATG+TGG 0.562187 2.3:+20778085 None:intergenic
CTTTCAGCTGGTTGCCACTG+TGG 0.563933 2.3:-20777123 MS.gene060201:CDS
ACTTCCTTGTGAAAAGTCAT+CGG 0.574248 2.3:+20777808 None:intergenic
ACTGTGGACCAAAGCCAACC+AGG 0.574474 2.3:-20777107 MS.gene060201:CDS
CAGTGGTGGGGAAGGTCGCG+TGG 0.579862 2.3:+20778134 None:intergenic
ATGTTACCAGCAGGAACTTG+AGG 0.580374 2.3:+20777419 None:intergenic
TACTTACTTACATGGAGTAA+GGG 0.588591 2.3:+20778064 None:intergenic
GATATCACACGTGAGGTCGT+AGG 0.591293 2.3:-20778693 MS.gene060201:CDS
GCAAATGGCGAACGCATGGA+AGG 0.591902 2.3:+20776995 None:intergenic
CCTGCCTCGATGTTACCAGC+AGG 0.597056 2.3:+20777410 None:intergenic
TCTGTTTGCTTGCAAAACGC+CGG 0.603910 2.3:+20777447 None:intergenic
CCCCTACTTTACAAAACTGA+AGG 0.605164 2.3:+20777057 None:intergenic
ATTAAACGAGTTGATGTCAC+CGG 0.605426 2.3:-20778777 MS.gene060201:CDS
GTGCCTGCGTTTGCAAACGG+TGG 0.610120 2.3:-20778719 MS.gene060201:CDS
TAAGGGCTGTCTATAGTACA+TGG 0.615567 2.3:+20777022 None:intergenic
TTACAACACAGTGGTGGGGA+AGG 0.615695 2.3:+20778126 None:intergenic
ACTATCGGTGGTGTCATCGC+CGG 0.619336 2.3:+20778857 None:intergenic
TGAACTTTCGCATATTGATG+AGG 0.622627 2.3:+20777310 None:intergenic
CATGCTTCCAGAACTTCTTG+CGG 0.624235 2.3:-20778805 MS.gene060201:CDS
CAATTTACAACACAGTGGTG+GGG 0.625248 2.3:+20778122 None:intergenic
CACCACCGATAGTGCATCGG+AGG 0.629479 2.3:-20778847 MS.gene060201:CDS
TGAAGAACAAAGCTCCGATG+TGG 0.630170 2.3:-20777217 MS.gene060201:CDS
ACTTTCGCATATTGATGAGG+CGG 0.635461 2.3:+20777313 None:intergenic
TCTCCACCGTTTGCAAACGC+AGG 0.641600 2.3:+20778716 None:intergenic
GGACCTGTTTAAGACAAGAA+GGG 0.643301 2.3:+20778640 None:intergenic
GTCCTCCGATGCACTATCGG+TGG 0.643639 2.3:+20778845 None:intergenic
AATGGCGAACGCATGGAAGG+CGG 0.645991 2.3:+20776998 None:intergenic
TGGTTGGCTTTGGTCCACAG+TGG 0.652104 2.3:+20777109 None:intergenic
TCTAATTGCTCGTTCCACAT+CGG 0.654420 2.3:+20777203 None:intergenic
TGGACCAAAGCCAACCAGGA+GGG 0.658819 2.3:-20777103 MS.gene060201:CDS
AAGATAGAGGTAAAATGTGG+AGG 0.660216 2.3:+20778088 None:intergenic
CATTAAATGACAGAACAAGC+CGG 0.669123 2.3:-20777466 MS.gene060201:CDS
TGACACCACCGATAGTGCAT+CGG 0.672102 2.3:-20778850 MS.gene060201:CDS
CTGCTGGTAACATCGAGGCA+GGG 0.678173 2.3:-20777409 MS.gene060201:CDS
GCGACGACATTTCGACGATG+CGG 0.691215 2.3:+20778744 None:intergenic
TTGATGTCACCGGAGAACAA+TGG 0.692340 2.3:-20778767 MS.gene060201:CDS
TATTCCAATTTACAACACAG+TGG 0.695058 2.3:+20778117 None:intergenic
GTGGAGAGATATCACACGTG+AGG 0.702332 2.3:-20778700 MS.gene060201:CDS
GTGGACCAAAGCCAACCAGG+AGG 0.733661 2.3:-20777104 MS.gene060201:CDS
AGTTCCTGCTGGTAACATCG+AGG 0.752296 2.3:-20777414 MS.gene060201:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATTATTTTAATATT+AGG - chr2.3:20777638-20777657 MS.gene060201:intron 0.0%
!! ATAATGATTAAAATTTCAAA+TGG - chr2.3:20777875-20777894 MS.gene060201:CDS 10.0%
!! ATTTATTGAAGAAAAAGAGT+AGG - chr2.3:20778173-20778192 MS.gene060201:intron 20.0%
!! GATGCATTTATTAAGTATAT+AGG - chr2.3:20777597-20777616 MS.gene060201:intron 20.0%
!! TCAAACTATTAAAGAAGAAA+AGG + chr2.3:20777525-20777544 None:intergenic 20.0%
!! TTAAAATTTCAAATGGAGAT+TGG - chr2.3:20777882-20777901 MS.gene060201:CDS 20.0%
!! TTGAGAACTAATTCAATAAA+TGG + chr2.3:20778282-20778301 None:intergenic 20.0%
!! TTTATGGATCATGAAAAATT+TGG - chr2.3:20777304-20777323 MS.gene060201:CDS 20.0%
!! TTTCTCTCTTGAATAATTTA+TGG - chr2.3:20777288-20777307 MS.gene060201:CDS 20.0%
!!! ATAATATTTACTCTTTTGTC+CGG + chr2.3:20778217-20778236 None:intergenic 20.0%
!!! TACTCTTTTTCTTCAATAAA+TGG + chr2.3:20778174-20778193 None:intergenic 20.0%
! AAGTAAAATTATCCTCATTC+AGG - chr2.3:20778139-20778158 MS.gene060201:CDS 25.0%
! ACAAACTAACTATTAACATC+TGG - chr2.3:20778244-20778263 MS.gene060201:intron 25.0%
!! AAATGAATTCATTTTGTTGC+AGG + chr2.3:20777264-20777283 None:intergenic 25.0%
!! AATGTTAGTCTACATTATGA+AGG + chr2.3:20777350-20777369 None:intergenic 25.0%
!! CTAACATTTTGTTCAATTAG+TGG - chr2.3:20777362-20777381 MS.gene060201:CDS 25.0%
!! TAATATTTACTCTTTTGTCC+GGG + chr2.3:20778216-20778235 None:intergenic 25.0%
CAAAACAGTACTTACTTACA+TGG + chr2.3:20777827-20777846 None:intergenic 30.0%
TACTTACTTACATGGAGTAA+GGG + chr2.3:20777819-20777838 None:intergenic 30.0%
TATTAGCAGCTAGAAGATAT+CGG - chr2.3:20778012-20778031 MS.gene060201:intron 30.0%
TATTCCAATTTACAACACAG+TGG + chr2.3:20777766-20777785 None:intergenic 30.0%
TATTGAAGAAAAAGAGTAGG+AGG - chr2.3:20778176-20778195 MS.gene060201:intron 30.0%
! TGTTCTGTCATTTAATGGTT+TGG + chr2.3:20778411-20778430 None:intergenic 30.0%
!! CATGTAAGTAAGTACTGTTT+TGG - chr2.3:20777825-20777844 MS.gene060201:CDS 30.0%
!! GTTTTGGCAAAAGGATTATT+TGG - chr2.3:20777841-20777860 MS.gene060201:CDS 30.0%
!! TCCTTCAGTTTTGTAAAGTA+GGG - chr2.3:20778822-20778841 MS.gene060201:CDS 30.0%
!!! CAAAAGGCTGAATTTTTTGT+AGG + chr2.3:20778504-20778523 None:intergenic 30.0%
AAAGAACATGCTACAAGTTC+TGG - chr2.3:20778629-20778648 MS.gene060201:intron 35.0%
AAGATAGAGGTAAAATGTGG+AGG + chr2.3:20777795-20777814 None:intergenic 35.0%
ACTTCCTTGTGAAAAGTCAT+CGG + chr2.3:20778075-20778094 None:intergenic 35.0%
CAAGGAAGTAATGCTTATGT+TGG - chr2.3:20778086-20778105 MS.gene060201:CDS 35.0%
CATTAAATGACAGAACAAGC+CGG - chr2.3:20778414-20778433 MS.gene060201:intron 35.0%
GTAATTACAAGTGTTCGTGT+CGG - chr2.3:20777462-20777481 MS.gene060201:CDS 35.0%
GTACTTACTTACATGGAGTA+AGG + chr2.3:20777820-20777839 None:intergenic 35.0%
GTTCTTTACAGTGCATCTTA+TGG + chr2.3:20778616-20778635 None:intergenic 35.0%
TGAACTTTCGCATATTGATG+AGG + chr2.3:20778573-20778592 None:intergenic 35.0%
TTCCCTTTATCTGTTAATGC+TGG + chr2.3:20777987-20778006 None:intergenic 35.0%
TTTCCCTTCTTGTCTTAAAC+AGG - chr2.3:20777237-20777256 MS.gene060201:CDS 35.0%
! GATATCTTCTAGCTGCTAAT+AGG + chr2.3:20778013-20778032 None:intergenic 35.0%
! GTGATTTTTCCGTTAAGAGA+AGG + chr2.3:20777217-20777236 None:intergenic 35.0%
! TGATGATGTTGCACAACTTA+TGG - chr2.3:20777944-20777963 MS.gene060201:intron 35.0%
! TGGTTTTTCTTTCCTGAATG+AGG + chr2.3:20778154-20778173 None:intergenic 35.0%
!! ATTAAACGAGTTGATGTCAC+CGG - chr2.3:20777103-20777122 MS.gene060201:CDS 35.0%
!! CCTTCAGTTTTGTAAAGTAG+GGG - chr2.3:20778823-20778842 MS.gene060201:CDS 35.0%
!! CTCCTTCAGTTTTGTAAAGT+AGG - chr2.3:20778821-20778840 MS.gene060201:CDS 35.0%
!! CTTCAGTTTTGTAAAGTAGG+GGG - chr2.3:20778824-20778843 MS.gene060201:CDS 35.0%
!!! GTAAGTACTGTTTTGGCAAA+AGG - chr2.3:20777832-20777851 MS.gene060201:CDS 35.0%
!!! TTGGACGTTTTGGTTTCAAA+AGG + chr2.3:20778520-20778539 None:intergenic 35.0%
!!! TTTTGAAACCAAAACGTCCA+AGG - chr2.3:20778519-20778538 MS.gene060201:intron 35.0%
ACTTTCGCATATTGATGAGG+CGG + chr2.3:20778570-20778589 None:intergenic 40.0%
ATCAGTGAAGAACTTTCAGC+TGG - chr2.3:20778745-20778764 MS.gene060201:CDS 40.0%
ATGATATCCGCAAGAAGTTC+TGG + chr2.3:20777085-20777104 None:intergenic 40.0%
ATGCTTATGTTGGCAAGCTA+AGG - chr2.3:20778096-20778115 MS.gene060201:CDS 40.0%
CAATTTACAACACAGTGGTG+GGG + chr2.3:20777761-20777780 None:intergenic 40.0%
CAGATACTTCAACAATGCTC+AGG - chr2.3:20776988-20777007 MS.gene060201:CDS 40.0%
CCAATTTACAACACAGTGGT+GGG + chr2.3:20777762-20777781 None:intergenic 40.0%
CCCCTACTTTACAAAACTGA+AGG + chr2.3:20778826-20778845 None:intergenic 40.0%
CGCCAGCATTAACAGATAAA+GGG - chr2.3:20777982-20778001 MS.gene060201:intron 40.0%
CTATCTATGAAGCACGGATA+CGG - chr2.3:20777385-20777404 MS.gene060201:CDS 40.0%
CTGTCATATCCTTTCTCTCA+TGG + chr2.3:20778721-20778740 None:intergenic 40.0%
CTTCACAATTTATGACGCCT+CGG - chr2.3:20778379-20778398 MS.gene060201:intron 40.0%
CTTGAACTTCCATGAGAGAA+AGG - chr2.3:20778709-20778728 MS.gene060201:CDS 40.0%
GGCAAGATAGAGGTAAAATG+TGG + chr2.3:20777798-20777817 None:intergenic 40.0%
TAAGGGCTGTCTATAGTACA+TGG + chr2.3:20778861-20778880 None:intergenic 40.0%
TAGTGGCTATCTATGAAGCA+CGG - chr2.3:20777379-20777398 MS.gene060201:CDS 40.0%
TCCAATTTACAACACAGTGG+TGG + chr2.3:20777763-20777782 None:intergenic 40.0%
TCGCCAGCATTAACAGATAA+AGG - chr2.3:20777981-20778000 MS.gene060201:intron 40.0%
TCTAATTGCTCGTTCCACAT+CGG + chr2.3:20778680-20778699 None:intergenic 40.0%
TCTACGAGTCAATTTCACGT+AGG - chr2.3:20777675-20777694 MS.gene060201:intron 40.0%
TTTGTCCGGGTTTAAACTCA+AGG + chr2.3:20778203-20778222 None:intergenic 40.0%
! AGGACCTGTTTAAGACAAGA+AGG + chr2.3:20777244-20777263 None:intergenic 40.0%
! CGGCTTGTTCTGTCATTTAA+TGG + chr2.3:20778416-20778435 None:intergenic 40.0%
! GCCATTTGCTTAACTAGCTT+CGG - chr2.3:20778899-20778918 MS.gene060201:CDS 40.0%
! GGACCTGTTTAAGACAAGAA+GGG + chr2.3:20777243-20777262 None:intergenic 40.0%
AGAGAGCAAATCATTCGCCT+TGG + chr2.3:20778539-20778558 None:intergenic 45.0%
ATAAGTCCTCAAGTTCCTGC+TGG - chr2.3:20778455-20778474 MS.gene060201:intron 45.0%
ATATCACACGTGAGGTCGTA+GGG - chr2.3:20777188-20777207 MS.gene060201:CDS 45.0%
ATGGAGTAAGGGCAAGATAG+AGG + chr2.3:20777808-20777827 None:intergenic 45.0%
ATGTTACCAGCAGGAACTTG+AGG + chr2.3:20778464-20778483 None:intergenic 45.0%
CATGCTTCCAGAACTTCTTG+CGG - chr2.3:20777075-20777094 MS.gene060201:CDS 45.0%
CCCACCACTGTGTTGTAAAT+TGG - chr2.3:20777759-20777778 MS.gene060201:intron 45.0%
CTTTCGCATATTGATGAGGC+GGG + chr2.3:20778569-20778588 None:intergenic 45.0%
GAGGACCTTGAGTTTAAACC+CGG - chr2.3:20778195-20778214 MS.gene060201:intron 45.0%
GCCGAAGCTAGTTAAGCAAA+TGG + chr2.3:20778903-20778922 None:intergenic 45.0%
GTAGGGTCACCTTCTCTTAA+CGG - chr2.3:20777205-20777224 MS.gene060201:CDS 45.0%
TCTGTTTGCTTGCAAAACGC+CGG + chr2.3:20778436-20778455 None:intergenic 45.0%
TGAAGAACAAAGCTCCGATG+TGG - chr2.3:20778663-20778682 MS.gene060201:CDS 45.0%
TTAAGCAAATGGCGAACGCA+TGG + chr2.3:20778892-20778911 None:intergenic 45.0%
TTGATGTCACCGGAGAACAA+TGG - chr2.3:20777113-20777132 MS.gene060201:CDS 45.0%
! ATCATTCGCCTTGGACGTTT+TGG + chr2.3:20778530-20778549 None:intergenic 45.0%
! GATGCCGATGACTTTTCACA+AGG - chr2.3:20778068-20778087 MS.gene060201:intron 45.0%
!! ATTTTGACGACTTCCAGCCA+GGG - chr2.3:20777723-20777742 MS.gene060201:intron 45.0%
AACGCATGGAAGGCGGATAA+GGG + chr2.3:20778878-20778897 None:intergenic 50.0%
ACAATTTATGACGCCTCGGC+TGG - chr2.3:20778383-20778402 MS.gene060201:intron 50.0%
AGTTCCTGCTGGTAACATCG+AGG - chr2.3:20778466-20778485 MS.gene060201:intron 50.0%
CTTGTGCCTGCGTTTGCAAA+CGG - chr2.3:20777158-20777177 MS.gene060201:CDS 50.0%
GATATCACACGTGAGGTCGT+AGG - chr2.3:20777187-20777206 MS.gene060201:CDS 50.0%
GCTCAGGCTCTCAATGATAC+CGG - chr2.3:20777004-20777023 MS.gene060201:CDS 50.0%
GGAACGAGCAATTAGAGTGC+TGG - chr2.3:20778684-20778703 MS.gene060201:CDS 50.0%
GTGGAGAGATATCACACGTG+AGG - chr2.3:20777180-20777199 MS.gene060201:CDS 50.0%
TCTTCATCTCCTTTCCCTCC+TGG + chr2.3:20778794-20778813 None:intergenic 50.0%
TGACACCACCGATAGTGCAT+CGG - chr2.3:20777030-20777049 MS.gene060201:CDS 50.0%
! AACTAGCTTCGGCACCAAAC+TGG - chr2.3:20778910-20778929 MS.gene060201:CDS 50.0%
! TTACAACACAGTGGTGGGGA+AGG + chr2.3:20777757-20777776 None:intergenic 50.0%
!! CGCAAGAAGTTCTGGAAGCA+TGG + chr2.3:20777077-20777096 None:intergenic 50.0%
!! GATTTTGACGACTTCCAGCC+AGG - chr2.3:20777722-20777741 MS.gene060201:intron 50.0%
AATGGCGAACGCATGGAAGG+CGG + chr2.3:20778885-20778904 None:intergenic 55.0%
ACGATGCGGCCATTGTTCTC+CGG + chr2.3:20777125-20777144 None:intergenic 55.0%
ACTGTGGACCAAAGCCAACC+AGG - chr2.3:20778773-20778792 MS.gene060201:CDS 55.0%
CAAAGCCAACCAGGAGGGAA+AGG - chr2.3:20778782-20778801 MS.gene060201:CDS 55.0%
CATCGGAGGACAGGACTGAT+TGG - chr2.3:20777047-20777066 MS.gene060201:CDS 55.0%
CATCTCCTTTCCCTCCTGGT+TGG + chr2.3:20778790-20778809 None:intergenic 55.0%
CCTGTCCTCCGATGCACTAT+CGG + chr2.3:20777041-20777060 None:intergenic 55.0%
CTGCTGGTAACATCGAGGCA+GGG - chr2.3:20778471-20778490 MS.gene060201:intron 55.0%
CTTTCAGCTGGTTGCCACTG+TGG - chr2.3:20778757-20778776 MS.gene060201:CDS 55.0%
GAACGCATGGAAGGCGGATA+AGG + chr2.3:20778879-20778898 None:intergenic 55.0%
GCAAATGGCGAACGCATGGA+AGG + chr2.3:20778888-20778907 None:intergenic 55.0%
GCGACGACATTTCGACGATG+CGG + chr2.3:20777139-20777158 None:intergenic 55.0%
TCTCCACCGTTTGCAAACGC+AGG + chr2.3:20777167-20777186 None:intergenic 55.0%
TGGACCAAAGCCAACCAGGA+GGG - chr2.3:20778777-20778796 MS.gene060201:CDS 55.0%
! TAATGGTTTGGCACCAGCCG+AGG + chr2.3:20778399-20778418 None:intergenic 55.0%
!! ACTATCGGTGGTGTCATCGC+CGG + chr2.3:20777026-20777045 None:intergenic 55.0%
!! CTTTCCCTCCTGGTTGGCTT+TGG + chr2.3:20778784-20778803 None:intergenic 55.0%
!! TGGTTGGCTTTGGTCCACAG+TGG + chr2.3:20778774-20778793 None:intergenic 55.0%
CACCACCGATAGTGCATCGG+AGG - chr2.3:20777033-20777052 MS.gene060201:CDS 60.0%
CCGATAGTGCATCGGAGGAC+AGG - chr2.3:20777038-20777057 MS.gene060201:CDS 60.0%
CCTGCCTCGATGTTACCAGC+AGG + chr2.3:20778473-20778492 None:intergenic 60.0%
CCTGCTGGTAACATCGAGGC+AGG - chr2.3:20778470-20778489 MS.gene060201:intron 60.0%
GCACGGATACGGACACGACA+CGG - chr2.3:20777396-20777415 MS.gene060201:CDS 60.0%
GTCCTCCGATGCACTATCGG+TGG + chr2.3:20777038-20777057 None:intergenic 60.0%
GTGCCTGCGTTTGCAAACGG+TGG - chr2.3:20777161-20777180 MS.gene060201:CDS 60.0%
GTGGACCAAAGCCAACCAGG+AGG - chr2.3:20778776-20778795 MS.gene060201:CDS 60.0%
! CAGTGGTGGGGAAGGTCGCG+TGG + chr2.3:20777749-20777768 None:intergenic 70.0%
GAAGGTCGCGTGGCCCTGGC+TGG + chr2.3:20777739-20777758 None:intergenic 75.0%
TGGGGAAGGTCGCGTGGCCC+TGG + chr2.3:20777743-20777762 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 20776959 20778943 20776959 ID=MS.gene060201
chr2.3 mRNA 20776959 20778943 20776959 ID=MS.gene060201.t1;Parent=MS.gene060201
chr2.3 exon 20778644 20778943 20778644 ID=MS.gene060201.t1.exon1;Parent=MS.gene060201.t1
chr2.3 CDS 20778644 20778943 20778644 ID=cds.MS.gene060201.t1;Parent=MS.gene060201.t1
chr2.3 exon 20778075 20778162 20778075 ID=MS.gene060201.t1.exon2;Parent=MS.gene060201.t1
chr2.3 CDS 20778075 20778162 20778075 ID=cds.MS.gene060201.t1;Parent=MS.gene060201.t1
chr2.3 exon 20777785 20777914 20777785 ID=MS.gene060201.t1.exon3;Parent=MS.gene060201.t1
chr2.3 CDS 20777785 20777914 20777785 ID=cds.MS.gene060201.t1;Parent=MS.gene060201.t1
chr2.3 exon 20776959 20777544 20776959 ID=MS.gene060201.t1.exon4;Parent=MS.gene060201.t1
chr2.3 CDS 20776959 20777544 20776959 ID=cds.MS.gene060201.t1;Parent=MS.gene060201.t1
Gene Sequence

>MS.gene060201

ATGAAGCTCTTTCGATCTCTTAAATTCTTCAGATACTTCAACAATGCTCAGGCTCTCAATGATACCGGCGATGACACCACCGATAGTGCATCGGAGGACAGGACTGATTGGTCTACCATGCTTCCAGAACTTCTTGCGGATATCATTAAACGAGTTGATGTCACCGGAGAACAATGGCCGCATCGTCGAAATGTCGTCGCTTGTGCCTGCGTTTGCAAACGGTGGAGAGATATCACACGTGAGGTCGTAGGGTCACCTTCTCTTAACGGAAAAATCACTTTCCCTTCTTGTCTTAAACAGGTCCTGCAACAAAATGAATTCATTTTATTTTTCTCTCTTGAATAATTTATGGATCATGAAAAATTTGGATGTAGTAATACATTATTTTCCTTCATAATGTAGACTAACATTTTGTTCAATTAGTGGCTATCTATGAAGCACGGATACGGACACGACACGGACACTGACACAACTAATAATTTGAAAAAATTACATAATTCAGTGTAATTACAAGTGTTCGTGTCGGTCAATTACATATTTCATCTCAATTTTTAAACTCAATTCCTTTTCTTCTTTAATAGTTTGATTTTGTTCATATCAATTTTTTCTTTAGAATTGAGTTAAAATTTTGAACTATTGATGCATTTATTAAGTATATAGGTCATATATATATATATATATATATATTATTTTAATATTAGGTAAACTCGTACAAGTCTACGAGTCAATTTCACGTAGGCAAATTGAGTTTACTTAAACTCTTGATTTTGACGACTTCCAGCCAGGGCCACGCGACCTTCCCCACCACTGTGTTGTAAATTGGAATAAGAAGACCTCCACATTTTACCTCTATCTTGCCCTTACTCCATGTAAGTAAGTACTGTTTTGGCAAAAGGATTATTTGGTTATAACTATGATAATGATTAAAATTTCAAATGGAGATTGGACAATGATTATTTCTCTCAATATTTCAACAAATATAACTTGATGATGTTGCACAACTTATGGTTTCTTTTTTTCAATCGCCAGCATTAACAGATAAAGGGAAGTTCCTATTAGCAGCTAGAAGATATCGGTGTGTTACGCATACTGAGTATGTTATATCGCTCGATGCCGATGACTTTTCACAAGGAAGTAATGCTTATGTTGGCAAGCTAAGGTAAAGATTTCTTGTAACAGAAAGTAAAATTATCCTCATTCAGGAAAGAAAAACCATTTATTGAAGAAAAAGAGTAGGAGGACCTTGAGTTTAAACCCGGACAAAAGAGTAAATATTATTAATCTAACAAACTAACTATTAACATCTGGCATTAAAAAAAACCATTTATTGAATTAGTTCTCAACAATATTTTGCTTTGTCTCAAGTACTGATCATATAGTTGCTGAAATGTCTTCACAGTTCAGATTTTCTTGAAGCAAGCTTCACAATTTATGACGCCTCGGCTGGTGCCAAACCATTAAATGACAGAACAAGCCGGCGTTTTGCAAGCAAACAGATAAGTCCTCAAGTTCCTGCTGGTAACATCGAGGCAGGGAACATCTCCTACAAAAAATTCAGCCTTTTGAAACCAAAACGTCCAAGGCGAATGATTTGCTCTCTGAAGTCTCCCGCCTCATCAATATGCGAAAGTTCAGATAGCAAGTCTTTCGACAACCATAAGATGCACTGTAAAGAACATGCTACAAGTTCTGGCTACACAATCTTGAAGAACAAAGCTCCGATGTGGAACGAGCAATTAGAGTGCTGGTTCTTGAACTTCCATGAGAGAAAGGATATGACAGTAGCATCAGTGAAGAACTTTCAGCTGGTTGCCACTGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAAGAAACAGTTCTCCTTCAGTTTTGTAAAGTAGGGGGTGATACTTTCACCATGTACTATAGACAGCCCTTATCCGCCTTCCATGCGTTCGCCATTTGCTTAACTAGCTTCGGCACCAAACTGGCTTGTCAGTAA
Protein sequence

>MS.gene060201.t1

MKLFRSLKFFRYFNNAQALNDTGDDTTDSASEDRTDWSTMLPELLADIIKRVDVTGEQWPHRRNVVACACVCKRWRDITREVVGSPSLNGKITFPSCLKQPGPRDLPHHCVVNWNKKTSTFYLYLALTPSLTDKGKFLLAARRYRCVTHTEYVISLDADDFSQGSNAYVGKLSSDFLEASFTIYDASAGAKPLNDRTSRRFASKQISPQVPAGNIEAGNISYKKFSLLKPKRPRRMICSLKSPASSICESSDSKSFDNHKMHCKEHATSSGYTILKNKAPMWNEQLECWFLNFHERKDMTVASVKNFQLVATVDQSQPGGKGDEETVLLQFCKVGGDTFTMYYRQPLSAFHAFAICLTSFGTKLACQ