AlfalfaGEDB | MS.gene03015

M. sativa cultivar XinJiangDaYe / MS.gene03015

KEGG: K19600
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00646.36 PF01167.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03015.t1	XP_013469223.1	99	401	4	0	1	401	1	401	3.40E-232	813.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03015.t1	Q8VY21	72.1	412	97	5	1	401	1	405	4.5e-169	595.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03015.t1	A0A072VNQ0	99.0	401	4	0	1	401	1	401	2.4e-232	813.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene03015.t1	TF	TUB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene028393	MS.gene03015	PPI
MS.gene03015	MS.gene63735	PPI
MS.gene03015	MS.gene28762	PPI
MS.gene03015	MS.gene065857	PPI
MS.gene03015	MS.gene043867	PPI
MS.gene03015	MS.gene060581	PPI
MS.gene03015	MS.gene026860	PPI
MS.gene03015	MS.gene060774	PPI
MS.gene03015	MS.gene060202	PPI
MS.gene03015	MS.gene97334	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03015.t1	MTR_1g088960	99.002	401	4	0	1	401	1	401	0.0	832
MS.gene03015.t1	MTR_2g020280	68.668	383	117	3	21	401	11	392	0.0	556
MS.gene03015.t1	MTR_2g020280	69.625	293	87	2	111	401	1	293	9.74e-153	434
MS.gene03015.t1	MTR_2g007930	52.900	431	168	10	1	401	1	426	4.63e-152	437
MS.gene03015.t1	MTR_5g020580	52.370	422	173	7	1	401	1	415	4.58e-144	416
MS.gene03015.t1	MTR_1g098790	50.459	436	175	10	1	401	1	430	5.09e-142	412
MS.gene03015.t1	MTR_8g077195	51.551	419	177	6	1	401	1	411	4.62e-141	409
MS.gene03015.t1	MTR_1g022370	55.028	358	149	6	50	401	70	421	5.18e-132	386
MS.gene03015.t1	MTR_2g076200	50.140	357	145	5	50	401	42	370	3.80e-118	349
MS.gene03015.t1	MTR_2g076210	45.000	360	160	8	50	401	37	366	1.84e-94	288

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03015.t1	AT2G47900	72.087	412	97	6	1	401	1	405	0.0	587
MS.gene03015.t1	AT2G47900	72.087	412	97	6	1	401	1	405	0.0	587
MS.gene03015.t1	AT2G47900	71.913	413	97	6	1	401	1	406	0.0	586
MS.gene03015.t1	AT3G06380	55.941	404	150	9	1	401	1	379	1.16e-146	422
MS.gene03015.t1	AT5G18680	58.356	365	124	8	50	401	39	388	3.50e-146	421
MS.gene03015.t1	AT1G43640	48.858	438	177	11	1	401	1	428	1.08e-139	406
MS.gene03015.t1	AT1G76900	47.265	457	182	9	1	401	1	454	3.21e-137	400
MS.gene03015.t1	AT1G76900	47.265	457	182	9	1	401	1	454	3.21e-137	400
MS.gene03015.t1	AT1G76900	47.265	457	182	9	1	401	1	454	3.21e-137	400
MS.gene03015.t1	AT1G25280	48.322	447	182	7	1	401	1	444	1.68e-135	396

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Find 111 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTAACAGGGGCCCT+AGG	0.556228	1.3:-62487876	MS.gene03015:intron
AACTTGCTGGACAATTGAGG+AGG	0.616449	1.3:+62490028	None:intergenic
AAGAAATTGAGTCTGCGTCG+GGG	0.697436	1.3:+62487795	None:intergenic
AAGAATGTTGTCGCGTGCGC+CGG	0.493919	1.3:-62490094	MS.gene03015:CDS
AAGGGATTTGACGTGAAATT+CGG	0.342997	1.3:-62490289	MS.gene03015:CDS
AAGTCAAAATGATGGGGAGC+TGG	0.581065	1.3:-62487683	MS.gene03015:CDS
AATCTGTCTCCATAAATTGG+AGG	0.567458	1.3:+62488204	None:intergenic
AATGCTTCAAAGGCAGAGAT+TGG	0.458777	1.3:+62487457	None:intergenic
ACATCCCTCAAAAGCTCATG+GGG	0.631071	1.3:+62490160	None:intergenic
ACCTCCAGGTTCAACAGCTG+AGG	0.623409	1.3:+62487822	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATGATATAGTCAGTGT+GGG	+	chr1.3:62489145-62489164	None:intergenic	30.0%
ATAACACATTGCATAATCCT+AGG	+	chr1.3:62489696-62489715	None:intergenic	30.0%
ATTATTACCTATTGCCTTCT+GGG	-	chr1.3:62489250-62489269	MS.gene03015:intron	30.0%
ATTCCTGCTCAACAAATATT+TGG	+	chr1.3:62487875-62487894	None:intergenic	30.0%
ATTTGGATGATGTATCAAGA+AGG	-	chr1.3:62489169-62489188	MS.gene03015:intron	30.0%
CCTTTGATAAGTCAAAATGA+TGG	-	chr1.3:62489861-62489880	MS.gene03015:intron	30.0%
GAAAGAACAAGAATGATTGT+TGG	+	chr1.3:62488170-62488189	None:intergenic	30.0%
GATGTTAATGTTATTGCCAA+TGG	-	chr1.3:62487320-62487339	MS.gene03015:intron	30.0%
TAACACATTGCATAATCCTA+GGG	+	chr1.3:62489695-62489714	None:intergenic	30.0%
TAACTCACTCTATTTGAATG+AGG	+	chr1.3:62487996-62488015	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	62487233	62490341	62487233	ID=MS.gene03015
chr1.3	mRNA	62487233	62490341	62487233	ID=MS.gene03015.t1;Parent=MS.gene03015
chr1.3	exon	62490003	62490341	62490003	ID=MS.gene03015.t1.exon1;Parent=MS.gene03015.t1
chr1.3	CDS	62490003	62490341	62490003	ID=cds.MS.gene03015.t1;Parent=MS.gene03015.t1
chr1.3	exon	62488668	62488755	62488668	ID=MS.gene03015.t1.exon2;Parent=MS.gene03015.t1
chr1.3	CDS	62488668	62488755	62488668	ID=cds.MS.gene03015.t1;Parent=MS.gene03015.t1
chr1.3	exon	62488357	62488486	62488357	ID=MS.gene03015.t1.exon3;Parent=MS.gene03015.t1
chr1.3	CDS	62488357	62488486	62488357	ID=cds.MS.gene03015.t1;Parent=MS.gene03015.t1
chr1.3	exon	62488093	62488269	62488093	ID=MS.gene03015.t1.exon4;Parent=MS.gene03015.t1
chr1.3	CDS	62488093	62488269	62488093	ID=cds.MS.gene03015.t1;Parent=MS.gene03015.t1
chr1.3	exon	62487419	62487885	62487419	ID=MS.gene03015.t1.exon5;Parent=MS.gene03015.t1
chr1.3	CDS	62487419	62487885	62487419	ID=cds.MS.gene03015.t1;Parent=MS.gene03015.t1
chr1.3	exon	62487233	62487276	62487233	ID=MS.gene03015.t1.exon6;Parent=MS.gene03015.t1
chr1.3	CDS	62487233	62487276	62487233	ID=cds.MS.gene03015.t1;Parent=MS.gene03015.t1

Gene Sequence

>MS.gene03015

ATGTCATTTAGGAGTATGATCATGGATAGGAAGGGATTTGACGTGAAATTCGGGTATGGTATGAGATCAAGATCACAGTCACACTGTGATGTTAATGTTATTGCCAATGGTGCTTTGGTGATTGATGATGGGTTGAGTCAGAGTTGTTGGGCTAACATGCCCCATGAGCTTTTGAGGGATGTGCTTATGAGAATTGAGGTTTCAGATGATACTTGGCCGACTCGGAAGAATGTTGTCGCGTGCGCCGGTGTTTGCAGGAGTTGGAGAGAAATTGTGAAGGAACTTGTTAAGCCTCCTCAATTGTCCAGCAAGTTGACATTCCCTGTCTCCTTGAAGCAGGTAGCACTTGTCTCTATCCCGATGTATCTTTTATTTTTTTCAGCTGCAAACTTGTTGTTCTTTTGTGACTTATAGCTTTCTGAGTTAAGCTCAGAGTAGTTTGTGATTGGCTAGACATCCTTTTTGAGCTGAATTGGGTTTGTTTTCTTGACAGTAGTATCATTATATTCTTCACTAGTATGTGATCTTGATGACTATACTTTACTAACTTGAGAAAGGTTGATGAGTTTTAGATGTTTTGCAAATGTTGTTTACTGTTTGATGTCATTCTCACGTTGGTGAAATTAAAAATCAATAAAACCAAATATTTGTTGAGCAGGAATGGTTGAGGAGTGGGTTGTTATCTTGGTTGTTGCGTGGCTCGGTGAATTCCCAACCCACACCTTGGTTGTTCCGTGATGCGGTGAATTCTTAACCCACACCTCATTCAAATAGAGTGAGTTAGTGAGAGAGCAAGAATGATTGTTGGCTTTGGCACATTTTTGTAAATGAAAGCCAGGAAACATTCTTGCTCTTTCACTAACTCTTGTTGAGTGAGGTTGGCTTTGGCCTATTTTTGTAAACGAACAATTTCATTTACAAAACTACGTCAAAGCCAACAATCATTCTTGTTCTTTCGCTAACTCATTCTCTTTGAGTGAGGTGTGAGTTGGGAATTCACAGCACCACGCAACAACCAAAGTAACAGCCCACCCCTCAATCATACCTGCTCAACAAATATGGGTTTTATTGATTATAATTTCACCAATGCAAGAGTAGCATCGAATAGTATACAAAGTACAAACAACATTTGTAAAACATATTAACTCATCAACATTTCTCAAGTGAAGTATAGTCATTAATTCAAGATCATACATAGTGAAAAATATAACAAAACTGCTGTCAATTAAACCTAACCATTTCAGTTCAAAAGGATGTATAGTTTCTTCGACTAGCTTCCTTGTGAATAGTGGCATTGGTGTAAGGATAATATATACACCATTGCCTGTAACTTGAAATAAGCATTGAATTTTGATACACTTTTTTCTACTAAGATGCAAAGGTTTCATCTAATGTGTGTAGTGCTGACTAGACTTGTTTTTTCATCTTTCTCAACTTTTGTTCAATTGGGAAAACAAACTCCAATGTAGCATGAGTTTAAGCATGAAACTATTTTAGTTTTATTCTTATCACACAAAGGAAACACAACTATATCTAAATTAAAAATTAGTAGTATCTATAAATGACTTATTATTTTCATCATGCAGCCTGGTCCAAGGGGCTCTCTTATTCAGTGCTATATTAAACGAAATCGCGGCGACCAAATTTATTATCTTTTTCTCAGTTTGAACCAAGGTGAGTGCTGCCAGAGATTTAAATTTAAGATGTGTGGTATAATGTGTTCTATATTCTGTGACACATGGGTTGGACTGGGTGTTACTTATTTTACCTTGTAACCTCAACTTGTATGATATTAAGAGAATATCTCTCATCTCTTTATCATTGTTGCCTTTGTAATGTTGATTTGATTTTGCAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTGCAACCCACACTGACTATATCATTTCTCTAAATTTGGATGATGTATCAAGAAGGAGTAGCACCTATGTTGGGAAGTTGAGGTATTTTAATTGACCTATGACATGACTTGTTGATTATTACCTATTGCCTTCTGGGTCTGAAATCACTTTTTGGTTCATTTGTAACAGATCAAACTTTCTGGGCACCAAATTTACAGTGTATGATGCACACCCTCCAATTTATGGAGACAGATTTGCAAAGTCCCGCACCACCAGGCTAAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCAGGAAACTATCCCATCGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGTATTAGTTTTTTCACTTGACGTATCTCTCTTTAGGCAAAGAGAATATCGTGGTCTGGAAATCATTAGATGAAAATAGCTGCTAATTTTTTTCCCTATTATCGATTGTTTCTTAGTTTCCTACTTTCCTTTCAAGAGTTGGCTCTATTTCCCTGCTATTGAATTCTTATTTAGAATAACTACAAGTTAGTTAACAAAATGTTAACAGGGGCCCTAGGATTATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCGACGCAGACTCAATTTCTTCATAGCAGAGTTGATACTTCTCCATCTATCCCGTTCTTCAGATCAAAATCAACCCGCTCAGAGAATCTCCAATCAGCAGCACCTTTGATAAGTCAAAATGATGGGGAGCTGGTGTTAAAAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTCAATGGACGTGTGACAGTCGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGAGTTTCTGAGGAGGCCCAGGAAAATGTCATTCTGCAGTTTGGAAAAGTCGGAAAGGATGTGTTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAGTGATTGCTGGAACAGGCAAGTATTCAAAGTACAACAAGATTGTAGTATTTGATTCAATTTAACAATTTTAAAGTTGCTCATTGATGTGATCGTTGAGATTAATGAAGGCTGACATAGTTGCTGATTTTACTTGGCAGGTTTTAGCCAGGTGGAATTGGCCCTCACAGTATTGCAGGTCTGA

Protein sequence

>MS.gene03015.t1

MSFRSMIMDRKGFDVKFGYGMRSRSQSHCDVNVIANGALVIDDGLSQSCWANMPHELLRDVLMRIEVSDDTWPTRKNVVACAGVCRSWREIVKELVKPPQLSSKLTFPVSLKQPGPRGSLIQCYIKRNRGDQIYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNLDDVSRRSSTYVGKLRSNFLGTKFTVYDAHPPIYGDRFAKSRTTRLSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRVDTSPSIPFFRSKSTRSENLQSAAPLISQNDGELVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEEAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACFSQVELALTVLQV