Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005646.t1 | XP_013469223.1 | 99 | 402 | 4 | 0 | 1 | 402 | 1 | 402 | 5.00E-233 | 816.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005646.t1 | Q8VY21 | 72.2 | 413 | 97 | 5 | 1 | 402 | 1 | 406 | 6.8e-170 | 598.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005646.t1 | A0A072VNQ0 | 99.0 | 402 | 4 | 0 | 1 | 402 | 1 | 402 | 3.6e-233 | 816.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene005646.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005646 | MS.gene026860 | PPI |
| MS.gene005646 | MS.gene83322 | PPI |
| MS.gene065862 | MS.gene005646 | PPI |
| MS.gene005646 | MS.gene060774 | PPI |
| MS.gene005646 | MS.gene060202 | PPI |
| MS.gene005646 | MS.gene97334 | PPI |
| MS.gene005646 | MS.gene90813 | PPI |
| MS.gene005646 | MS.gene48652 | PPI |
| MS.gene005646 | MS.gene029082 | PPI |
| MS.gene005646 | MS.gene065853 | PPI |
| MS.gene005646 | MS.gene35064 | PPI |
| MS.gene005646 | MS.gene065836 | PPI |
| MS.gene005646 | MS.gene060580 | PPI |
| MS.gene005646 | MS.gene060201 | PPI |
| MS.gene005646 | MS.gene63734 | PPI |
| MS.gene005646 | MS.gene63735 | PPI |
| MS.gene005646 | MS.gene92231 | PPI |
| MS.gene005646 | MS.gene028393 | PPI |
| MS.gene005646 | MS.gene065857 | PPI |
| MS.gene005646 | MS.gene043867 | PPI |
| MS.gene005646 | MS.gene046119 | PPI |
| MS.gene005646 | MS.gene060581 | PPI |
| MS.gene005646 | MS.gene28762 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005646.t1 | MTR_1g088960 | 99.005 | 402 | 4 | 0 | 1 | 402 | 1 | 402 | 0.0 | 833 |
| MS.gene005646.t1 | MTR_2g020280 | 68.750 | 384 | 117 | 3 | 21 | 402 | 11 | 393 | 0.0 | 556 |
| MS.gene005646.t1 | MTR_2g020280 | 69.728 | 294 | 87 | 2 | 111 | 402 | 1 | 294 | 1.65e-153 | 435 |
| MS.gene005646.t1 | MTR_2g007930 | 53.009 | 432 | 168 | 10 | 1 | 402 | 1 | 427 | 8.31e-153 | 439 |
| MS.gene005646.t1 | MTR_5g020580 | 52.482 | 423 | 173 | 7 | 1 | 402 | 1 | 416 | 1.19e-144 | 417 |
| MS.gene005646.t1 | MTR_1g098790 | 50.572 | 437 | 175 | 10 | 1 | 402 | 1 | 431 | 8.81e-143 | 413 |
| MS.gene005646.t1 | MTR_8g077195 | 51.667 | 420 | 177 | 6 | 1 | 402 | 1 | 412 | 8.54e-142 | 410 |
| MS.gene005646.t1 | MTR_1g022370 | 55.153 | 359 | 149 | 6 | 50 | 402 | 70 | 422 | 7.51e-133 | 388 |
| MS.gene005646.t1 | MTR_2g076200 | 50.279 | 358 | 145 | 5 | 50 | 402 | 42 | 371 | 4.69e-119 | 350 |
| MS.gene005646.t1 | MTR_2g076210 | 44.875 | 361 | 161 | 8 | 50 | 402 | 37 | 367 | 8.07e-95 | 288 |
| MS.gene005646.t1 | MTR_8g077675 | 41.487 | 417 | 200 | 17 | 1 | 395 | 1 | 395 | 1.18e-82 | 258 |
| MS.gene005646.t1 | MTR_8g077620 | 38.614 | 404 | 217 | 10 | 1 | 393 | 1 | 384 | 1.01e-80 | 253 |
| MS.gene005646.t1 | MTR_8g077650 | 39.617 | 313 | 144 | 9 | 99 | 394 | 44 | 328 | 1.18e-61 | 202 |
| MS.gene005646.t1 | MTR_8g077640 | 35.589 | 399 | 189 | 12 | 1 | 392 | 46 | 383 | 3.36e-56 | 189 |
| MS.gene005646.t1 | MTR_1g023800 | 39.375 | 160 | 91 | 3 | 1 | 156 | 1 | 158 | 6.96e-30 | 113 |
| MS.gene005646.t1 | MTR_0210s0010 | 38.776 | 98 | 54 | 1 | 92 | 189 | 8 | 99 | 7.44e-14 | 67.8 |
| MS.gene005646.t1 | MTR_2g105390 | 50.000 | 62 | 24 | 1 | 340 | 401 | 305 | 359 | 2.24e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005646.t1 | AT2G47900 | 72.155 | 413 | 97 | 6 | 1 | 402 | 1 | 406 | 0.0 | 588 |
| MS.gene005646.t1 | AT2G47900 | 72.155 | 413 | 97 | 6 | 1 | 402 | 1 | 406 | 0.0 | 588 |
| MS.gene005646.t1 | AT2G47900 | 71.981 | 414 | 97 | 6 | 1 | 402 | 1 | 407 | 0.0 | 587 |
| MS.gene005646.t1 | AT3G06380 | 56.049 | 405 | 150 | 9 | 1 | 402 | 1 | 380 | 2.43e-147 | 423 |
| MS.gene005646.t1 | AT5G18680 | 58.470 | 366 | 124 | 8 | 50 | 402 | 39 | 389 | 6.44e-147 | 422 |
| MS.gene005646.t1 | AT1G43640 | 48.747 | 439 | 178 | 11 | 1 | 402 | 1 | 429 | 1.70e-140 | 407 |
| MS.gene005646.t1 | AT1G76900 | 47.380 | 458 | 182 | 9 | 1 | 402 | 1 | 455 | 5.53e-138 | 402 |
| MS.gene005646.t1 | AT1G76900 | 47.380 | 458 | 182 | 9 | 1 | 402 | 1 | 455 | 5.53e-138 | 402 |
| MS.gene005646.t1 | AT1G76900 | 47.380 | 458 | 182 | 9 | 1 | 402 | 1 | 455 | 5.53e-138 | 402 |
| MS.gene005646.t1 | AT1G25280 | 48.438 | 448 | 182 | 7 | 1 | 402 | 1 | 445 | 2.90e-136 | 397 |
| MS.gene005646.t1 | AT2G18280 | 51.238 | 404 | 184 | 6 | 1 | 402 | 1 | 393 | 1.03e-134 | 391 |
| MS.gene005646.t1 | AT2G18280 | 51.238 | 404 | 184 | 6 | 1 | 402 | 1 | 393 | 1.03e-134 | 391 |
| MS.gene005646.t1 | AT1G47270 | 53.117 | 369 | 149 | 5 | 42 | 402 | 36 | 388 | 6.89e-133 | 387 |
| MS.gene005646.t1 | AT1G47270 | 53.117 | 369 | 149 | 5 | 42 | 402 | 61 | 413 | 7.34e-133 | 387 |
| MS.gene005646.t1 | AT1G47270 | 53.117 | 369 | 149 | 5 | 42 | 402 | 60 | 412 | 9.95e-133 | 387 |
| MS.gene005646.t1 | AT1G43640 | 51.359 | 368 | 147 | 7 | 62 | 402 | 1 | 363 | 6.78e-130 | 378 |
| MS.gene005646.t1 | AT5G18680 | 58.497 | 306 | 100 | 7 | 109 | 402 | 7 | 297 | 9.42e-116 | 340 |
| MS.gene005646.t1 | AT3G06380 | 59.589 | 292 | 108 | 5 | 113 | 402 | 5 | 288 | 3.52e-113 | 333 |
| MS.gene005646.t1 | AT1G53320 | 49.036 | 363 | 152 | 6 | 48 | 402 | 42 | 379 | 5.93e-113 | 335 |
| MS.gene005646.t1 | AT1G25280 | 50.741 | 270 | 94 | 5 | 169 | 402 | 1 | 267 | 5.95e-83 | 255 |
| MS.gene005646.t1 | AT1G25280 | 50.741 | 270 | 94 | 5 | 169 | 402 | 1 | 267 | 5.95e-83 | 255 |
| MS.gene005646.t1 | AT1G61940 | 70.930 | 86 | 25 | 0 | 53 | 138 | 1 | 86 | 4.97e-40 | 144 |
| MS.gene005646.t1 | AT1G61940 | 72.131 | 61 | 17 | 0 | 53 | 113 | 1 | 61 | 1.41e-24 | 101 |
| MS.gene005646.t1 | AT1G61940 | 48.000 | 100 | 28 | 5 | 248 | 346 | 102 | 178 | 1.20e-12 | 67.8 |
Find 0 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAAAGATACATC+GGG | + | 8683:142963-142982 | None:intergenic | 15.0% |
| !! | GAAAAAAATAAAAGATACAT+CGG | + | 8683:142964-142983 | None:intergenic | 15.0% |
| !! | TAAATAAGAATTCAATATCA+GGG | + | 8683:145000-145019 | None:intergenic | 15.0% |
| !! | TGAGAAAAAGATAATAAATT+TGG | + | 8683:144241-144260 | None:intergenic | 15.0% |
| !! | AAATCAAATCAACATTACAA+AGG | + | 8683:144429-144448 | None:intergenic | 20.0% |
| !! | AATTGTTCGTTTACAAAAAT+AGG | + | 8683:143492-143511 | None:intergenic | 20.0% |
| !! | CTAAATAAGAATTCAATATC+AGG | + | 8683:145001-145020 | None:intergenic | 20.0% |
| !! | CTATATCATTTCTCTAAATT+TGG | - | 8683:144518-144537 | MS.gene005646:intron | 20.0% |
| !! | TAGTTAACAAAATGTTAACA+GGG | - | 8683:145034-145053 | MS.gene005646:intron | 20.0% |
| !! | TTAGTTAACAAAATGTTAAC+AGG | - | 8683:145033-145052 | MS.gene005646:intron | 20.0% |
| ! | ACATCTTAAATCTAAATCTC+TGG | + | 8683:144286-144305 | None:intergenic | 25.0% |
| ! | ACTAAGAAACAATCGATAAA+AGG | + | 8683:144944-144963 | None:intergenic | 25.0% |
| ! | AGTTAACAAAATGTTAACAG+GGG | - | 8683:145035-145054 | MS.gene005646:intron | 25.0% |
| ! | ATTATTACCTATTACCTTCT+GGG | - | 8683:144616-144635 | MS.gene005646:intron | 25.0% |
| ! | CTAAGAAACAATCGATAAAA+GGG | + | 8683:144943-144962 | None:intergenic | 25.0% |
| ! | CTTTGATAAGTCAAAATGAT+GGG | - | 8683:145228-145247 | MS.gene005646:CDS | 25.0% |
| ! | TCTTAATATCATACAAGTTG+AGG | + | 8683:144377-144396 | None:intergenic | 25.0% |
| ! | TTTGATAAGTCAAAATGATG+GGG | - | 8683:145229-145248 | MS.gene005646:CDS | 25.0% |
| !! | AGATTTAGATTTAAGATGTG+TGG | - | 8683:144287-144306 | MS.gene005646:intron | 25.0% |
| !! | TCATATGATCTGAATGTTTT+GGG | - | 8683:144819-144838 | MS.gene005646:intron | 25.0% |
| !! | TTCTCAACTTTTGTTCAATT+GGG | - | 8683:144026-144045 | MS.gene005646:intron | 25.0% |
| !! | TTTCTCAACTTTTGTTCAAT+TGG | - | 8683:144025-144044 | MS.gene005646:intron | 25.0% |
| !!! | GTTTTATTCTTATCACACAA+AGG | - | 8683:144095-144114 | MS.gene005646:intron | 25.0% |
| !!! | TTTTTTCTACTAAGATGCAA+TGG | - | 8683:143958-143977 | MS.gene005646:intron | 25.0% |
| AGAAATGATATAGTCAGTGT+GGG | + | 8683:144511-144530 | None:intergenic | 30.0% | |
| ATAACACATTGCATAATCCT+AGG | + | 8683:145062-145081 | None:intergenic | 30.0% | |
| ATTCCTGCTCAACAAATATT+TGG | + | 8683:143243-143262 | None:intergenic | 30.0% | |
| CCTTTGATAAGTCAAAATGA+TGG | - | 8683:145227-145246 | MS.gene005646:CDS | 30.0% | |
| GATGTTAATGTTATTGCCAA+TGG | - | 8683:142691-142710 | MS.gene005646:CDS | 30.0% | |
| GATTATTACCTATTACCTTC+TGG | - | 8683:144615-144634 | MS.gene005646:intron | 30.0% | |
| TAACACATTGCATAATCCTA+GGG | + | 8683:145061-145080 | None:intergenic | 30.0% | |
| TAACTCACTCTATTTGAATG+AGG | + | 8683:143364-143383 | None:intergenic | 30.0% | |
| TAATCAACAAGTCATGTCAT+AGG | + | 8683:144600-144619 | None:intergenic | 30.0% | |
| TAGGATTATGCAATGTGTTA+TGG | - | 8683:145061-145080 | MS.gene005646:intron | 30.0% | |
| TGCATCATACACTGTAAATT+TGG | + | 8683:144691-144710 | None:intergenic | 30.0% | |
| TGCTATATTAAACGAAATCG+CGG | - | 8683:144212-144231 | MS.gene005646:intron | 30.0% | |
| TTCAGTTAAAAATTTCCAGC+TGG | - | 8683:145337-145356 | MS.gene005646:CDS | 30.0% | |
| TTCTATATTCTGTGACACAT+GGG | - | 8683:144319-144338 | MS.gene005646:intron | 30.0% | |
| TTTAGGTAAAGAGAATATCG+CGG | - | 8683:144878-144897 | MS.gene005646:intron | 30.0% | |
| ! | AAACCAAATATTTGTTGAGC+AGG | - | 8683:143237-143256 | MS.gene005646:intron | 30.0% |
| ! | AAATATTTGTTGAGCAGGAA+TGG | - | 8683:143242-143261 | MS.gene005646:intron | 30.0% |
| ! | CATTTTTGTAAATGAAAGCC+AGG | - | 8683:143417-143436 | MS.gene005646:CDS | 30.0% |
| ! | CTCATATGATCTGAATGTTT+TGG | - | 8683:144818-144837 | MS.gene005646:intron | 30.0% |
| ! | TACATCCTTTTGAACTGAAA+TGG | + | 8683:143837-143856 | None:intergenic | 30.0% |
| !! | GTTGATTTTGATCTGAAGAA+CGG | + | 8683:145179-145198 | None:intergenic | 30.0% |
| !! | TTGATTTTGATCTGAAGAAC+GGG | + | 8683:145178-145197 | None:intergenic | 30.0% |
| !!! | CCATCATTTTGACTTATCAA+AGG | + | 8683:145230-145249 | None:intergenic | 30.0% |
| !!! | GAAATCACTTTTTGGTTCAT+TGG | - | 8683:144642-144661 | MS.gene005646:intron | 30.0% |
| AAACCCAATTCAGCTCAAAA+AGG | + | 8683:143064-143083 | None:intergenic | 35.0% | |
| AAATAGAGCCAACTCTTGAA+AGG | + | 8683:144977-144996 | None:intergenic | 35.0% | |
| AAGGGATTTGACGTGAAATT+CGG | - | 8683:142634-142653 | MS.gene005646:CDS | 35.0% | |
| AATCTGTCTCCATAAATTGG+AGG | + | 8683:144717-144736 | None:intergenic | 35.0% | |
| ACTCTATTTGAATGAGGTGT+GGG | + | 8683:143358-143377 | None:intergenic | 35.0% | |
| AGTATGATCATGGATAGGAA+GGG | - | 8683:142616-142635 | MS.gene005646:CDS | 35.0% | |
| ATCTGTCTCCATAAATTGGA+GGG | + | 8683:144716-144735 | None:intergenic | 35.0% | |
| ATTCTGCAGTTTGGAAAAGT+CGG | - | 8683:145407-145426 | MS.gene005646:CDS | 35.0% | |
| ATTTGGATGATGTGTCAAGA+AGG | - | 8683:144535-144554 | MS.gene005646:intron | 35.0% | |
| CATACCTGCTCAACAAATAT+GGG | - | 8683:143641-143660 | MS.gene005646:CDS | 35.0% | |
| CCTAACCATTTCAGTTCAAA+AGG | - | 8683:143829-143848 | MS.gene005646:intron | 35.0% | |
| GAAAATGTCATTCTGCAGTT+TGG | - | 8683:145398-145417 | MS.gene005646:CDS | 35.0% | |
| GAGAAATGATATAGTCAGTG+TGG | + | 8683:144512-144531 | None:intergenic | 35.0% | |
| GAGAGAACAAGAATGATTGT+TGG | + | 8683:143538-143557 | None:intergenic | 35.0% | |
| GCAAATCTGTCTCCATAAAT+TGG | + | 8683:144720-144739 | None:intergenic | 35.0% | |
| GCATATTGCAAATGCTTCAA+AGG | + | 8683:145474-145493 | None:intergenic | 35.0% | |
| GGTAACAGATCAAACTTTCT+GGG | - | 8683:144663-144682 | MS.gene005646:intron | 35.0% | |
| GTTCTATATTCTGTGACACA+TGG | - | 8683:144318-144337 | MS.gene005646:intron | 35.0% | |
| TAACTCATTCTCTTTGAGTG+AGG | - | 8683:143560-143579 | MS.gene005646:CDS | 35.0% | |
| TCATACCTGCTCAACAAATA+TGG | - | 8683:143640-143659 | MS.gene005646:CDS | 35.0% | |
| TCCTAAAAATGGAGTTTCTG+AGG | - | 8683:145367-145386 | MS.gene005646:CDS | 35.0% | |
| TGCTTAAACTCATGCTACAT+TGG | + | 8683:144062-144081 | None:intergenic | 35.0% | |
| TGGTAACAGATCAAACTTTC+TGG | - | 8683:144662-144681 | MS.gene005646:intron | 35.0% | |
| TGTTAAAAAACAAGGCTCCT+AGG | - | 8683:145258-145277 | MS.gene005646:CDS | 35.0% | |
| TTGAGGTTTCAGATGATACT+TGG | - | 8683:142797-142816 | MS.gene005646:CDS | 35.0% | |
| ! | AAAACCCATATTTGTTGAGC+AGG | + | 8683:143648-143667 | None:intergenic | 35.0% |
| ! | CCTTTTGAACTGAAATGGTT+AGG | + | 8683:143832-143851 | None:intergenic | 35.0% |
| ! | CTTTTTCTCAGTTTGAACCA+AGG | - | 8683:144251-144270 | MS.gene005646:intron | 35.0% |
| ! | GTCATTTAGGAGTATGATCA+TGG | - | 8683:142606-142625 | MS.gene005646:CDS | 35.0% |
| ! | TAAAAATGGAGTTTCTGAGG+AGG | - | 8683:145370-145389 | MS.gene005646:CDS | 35.0% |
| ! | TCATACAAGTTGAGGTTACA+AGG | + | 8683:144369-144388 | None:intergenic | 35.0% |
| ! | TTAGGAGTATGATCATGGAT+AGG | - | 8683:142611-142630 | MS.gene005646:CDS | 35.0% |
| !! | ACATCCTTTTTGAGCTGAAT+TGG | - | 8683:143057-143076 | MS.gene005646:CDS | 35.0% |
| !! | CAATGCTTATTTCGAGTTAC+AGG | + | 8683:143925-143944 | None:intergenic | 35.0% |
| !! | CATCCTTTTTGAGCTGAATT+GGG | - | 8683:143058-143077 | MS.gene005646:CDS | 35.0% |
| !! | TCCTCAGAAACTCCATTTTT+AGG | + | 8683:145371-145390 | None:intergenic | 35.0% |
| !! | TTATTTCGAGTTACAGGCAA+TGG | + | 8683:143919-143938 | None:intergenic | 35.0% |
| AAAGTGATTTCAGACCCAGA+AGG | + | 8683:144633-144652 | None:intergenic | 40.0% | |
| AATGCTTCAAAGGCAGAGAT+TGG | + | 8683:145464-145483 | None:intergenic | 40.0% | |
| AGGGATTTGACGTGAAATTC+GGG | - | 8683:142635-142654 | MS.gene005646:CDS | 40.0% | |
| ATACCTCAACTTCCCAACAT+AGG | + | 8683:144568-144587 | None:intergenic | 40.0% | |
| ATATTCTGTGACACATGGGT+TGG | - | 8683:144323-144342 | MS.gene005646:intron | 40.0% | |
| ATCATATGAGACATGCACGA+TGG | + | 8683:144808-144827 | None:intergenic | 40.0% | |
| ATTCGATGCAACTCTTGCAT+TGG | + | 8683:143687-143706 | None:intergenic | 40.0% | |
| CACTCTATTTGAATGAGGTG+TGG | + | 8683:143359-143378 | None:intergenic | 40.0% | |
| CACTTGACGTATCTCTCTTT+AGG | - | 8683:144861-144880 | MS.gene005646:intron | 40.0% | |
| CTGGTTGCTTCTCCTAAAAA+TGG | - | 8683:145356-145375 | MS.gene005646:CDS | 40.0% | |
| GAAAGAGCAAGAATGTTTCC+TGG | + | 8683:143438-143457 | None:intergenic | 40.0% | |
| GAGAGAGCAAGAATGATTGT+TGG | - | 8683:143386-143405 | MS.gene005646:CDS | 40.0% | |
| GAGTATGATCATGGATAGGA+AGG | - | 8683:142615-142634 | MS.gene005646:CDS | 40.0% | |
| GAGTTGGAGAGAAATTGTGA+AGG | - | 8683:142861-142880 | MS.gene005646:CDS | 40.0% | |
| GATTGGATACTGGTAATCCA+TGG | + | 8683:145447-145466 | None:intergenic | 40.0% | |
| GGATGTGCTTATGAGAATTG+AGG | - | 8683:142780-142799 | MS.gene005646:CDS | 40.0% | |
| GTTAAGAATTCACCGCATCA+CGG | + | 8683:143336-143355 | None:intergenic | 40.0% | |
| GTTTGATGTCATTCTCACGT+TGG | - | 8683:143196-143215 | MS.gene005646:intron | 40.0% | |
| TAAAAAACAAGGCTCCTAGG+TGG | - | 8683:145261-145280 | MS.gene005646:CDS | 40.0% | |
| TAACTCTTGTTGAGTGAGGT+TGG | - | 8683:143460-143479 | MS.gene005646:intron | 40.0% | |
| TCACTAACTCTTGTTGAGTG+AGG | - | 8683:143456-143475 | MS.gene005646:intron | 40.0% | |
| TCATATGAGACATGCACGAT+GGG | + | 8683:144807-144826 | None:intergenic | 40.0% | |
| TGAAGAAATTGAGTCTGCGT+CGG | + | 8683:145128-145147 | None:intergenic | 40.0% | |
| TGAAGTTCAAACACCAGCAT+TGG | + | 8683:145298-145317 | None:intergenic | 40.0% | |
| TGCTGGTGTTTGAACTTCAA+TGG | - | 8683:145299-145318 | MS.gene005646:CDS | 40.0% | |
| TGTTATTGCCAATGGTGCTT+TGG | - | 8683:142699-142718 | MS.gene005646:CDS | 40.0% | |
| TGTTGAGCAGGTATGATTGA+GGG | + | 8683:143636-143655 | None:intergenic | 40.0% | |
| TTCCTTGTGAATAGTGGCAT+TGG | - | 8683:143874-143893 | MS.gene005646:CDS | 40.0% | |
| TTGTTATCTTGGTTGTTGCG+TGG | - | 8683:143277-143296 | MS.gene005646:intron | 40.0% | |
| TTGTTGAGCAGGTATGATTG+AGG | + | 8683:143637-143656 | None:intergenic | 40.0% | |
| TTTCAGACCCAGAAGGTAAT+AGG | + | 8683:144626-144645 | None:intergenic | 40.0% | |
| TTTGACGTGAAATTCGGGTA+TGG | - | 8683:142640-142659 | MS.gene005646:CDS | 40.0% | |
| ! | ACTAGCTTCCTTGTGAATAG+TGG | - | 8683:143868-143887 | MS.gene005646:CDS | 40.0% |
| ! | ACTGCAGAATGACATTTTCC+TGG | + | 8683:145397-145416 | None:intergenic | 40.0% |
| ! | AGCTCAGAGTAGTTTGTGAT+TGG | - | 8683:143030-143049 | MS.gene005646:CDS | 40.0% |
| ! | ATCAATCACCAAAGCACCAT+TGG | + | 8683:142710-142729 | None:intergenic | 40.0% |
| ! | CTGCAGAATGACATTTTCCT+GGG | + | 8683:145396-145415 | None:intergenic | 40.0% |
| ! | GGAGCTGGTGTTAAAAAACA+AGG | - | 8683:145250-145269 | MS.gene005646:CDS | 40.0% |
| ! | GTGCTTTGGTGATTGATGAT+GGG | - | 8683:142713-142732 | MS.gene005646:CDS | 40.0% |
| !! | ATCTGAATGTTTTGGGCTCT+AGG | - | 8683:144826-144845 | MS.gene005646:intron | 40.0% |
| !! | CTGGGTCTGAAATCACTTTT+TGG | - | 8683:144634-144653 | MS.gene005646:intron | 40.0% |
| !! | CTGTTACTTTGGTTGTTGTG+TGG | + | 8683:143608-143627 | None:intergenic | 40.0% |
| !! | GCAAGAATGATTGTTGGCTT+TGG | - | 8683:143392-143411 | MS.gene005646:CDS | 40.0% |
| !! | GTTATTTTCATCATGCAGCC+TGG | - | 8683:144167-144186 | MS.gene005646:intron | 40.0% |
| !! | TGAATAGTGGCATTGGTGTA+AGG | - | 8683:143881-143900 | MS.gene005646:CDS | 40.0% |
| !! | TTATCAAAGGTGCTGCTGAT+TGG | + | 8683:145217-145236 | None:intergenic | 40.0% |
| AAAATGTTAACAGGGGCCCT+AGG | - | 8683:145042-145061 | MS.gene005646:intron | 45.0% | |
| AAGAAATTGAGTCTGCGTCG+GGG | + | 8683:145126-145145 | None:intergenic | 45.0% | |
| ACATCCCTCAAAAGCTCATG+GGG | + | 8683:142766-142785 | None:intergenic | 45.0% | |
| AGAAGGAGTAGCACCTATGT+TGG | - | 8683:144552-144571 | MS.gene005646:intron | 45.0% | |
| AGAGCCAACTCTTGAAAGGA+AGG | + | 8683:144973-144992 | None:intergenic | 45.0% | |
| CAAAGGCAGAGATTGGATAC+TGG | + | 8683:145457-145476 | None:intergenic | 45.0% | |
| CACATCCCTCAAAAGCTCAT+GGG | + | 8683:142767-142786 | None:intergenic | 45.0% | |
| CACCAATGCCACTATTCACA+AGG | + | 8683:143879-143898 | None:intergenic | 45.0% | |
| CCAACTCTTGAAAGGAAGGT+AGG | + | 8683:144969-144988 | None:intergenic | 45.0% | |
| CCTACCTTCCTTTCAAGAGT+TGG | - | 8683:144966-144985 | MS.gene005646:intron | 45.0% | |
| CTGATTGGAGATTCTCTGAG+CGG | + | 8683:145202-145221 | None:intergenic | 45.0% | |
| CTTTGAGTGAGGTGTGAGTT+GGG | - | 8683:143571-143590 | MS.gene005646:CDS | 45.0% | |
| GAAGAAATTGAGTCTGCGTC+GGG | + | 8683:145127-145146 | None:intergenic | 45.0% | |
| GAAGGAGTAGCACCTATGTT+GGG | - | 8683:144553-144572 | MS.gene005646:intron | 45.0% | |
| GATCTGAAGAACGGGATAGA+TGG | + | 8683:145170-145189 | None:intergenic | 45.0% | |
| GATGCACACCCTCCAATTTA+TGG | - | 8683:144705-144724 | MS.gene005646:intron | 45.0% | |
| GCAGTTTGGAAAAGTCGGAA+AGG | - | 8683:145412-145431 | MS.gene005646:CDS | 45.0% | |
| GTAAAGAGAATATCGCGGTC+TGG | - | 8683:144883-144902 | MS.gene005646:intron | 45.0% | |
| GTTGAGCAGGTATGATTGAG+GGG | + | 8683:143635-143654 | None:intergenic | 45.0% | |
| TAGTTTCCTGCAGGAACTCT+TGG | + | 8683:144783-144802 | None:intergenic | 45.0% | |
| TCTTTGAGTGAGGTGTGAGT+TGG | - | 8683:143570-143589 | MS.gene005646:CDS | 45.0% | |
| TGATTGGAGATTCTCTGAGC+GGG | + | 8683:145201-145220 | None:intergenic | 45.0% | |
| TTGTTGAGCAGGAATGGTTG+AGG | - | 8683:143248-143267 | MS.gene005646:intron | 45.0% | |
| TTTGCAGCCTCAACTGATGA+CGG | - | 8683:144447-144466 | MS.gene005646:intron | 45.0% | |
| ! | AAGTCAAAATGATGGGGAGC+TGG | - | 8683:145235-145254 | MS.gene005646:CDS | 45.0% |
| ! | ATGGGTTGAGTCAGAGTTGT+TGG | - | 8683:142731-142750 | MS.gene005646:CDS | 45.0% |
| ! | GGTGCTTTGGTGATTGATGA+TGG | - | 8683:142712-142731 | MS.gene005646:CDS | 45.0% |
| ! | TGGGTTGAGTCAGAGTTGTT+GGG | - | 8683:142732-142751 | MS.gene005646:CDS | 45.0% |
| !! | AACTTGCTGGACAATTGAGG+AGG | + | 8683:142898-142917 | None:intergenic | 45.0% |
| !! | GTCAACTTGCTGGACAATTG+AGG | + | 8683:142901-142920 | None:intergenic | 45.0% |
| !! | TCTTGGTGTCAAAGCTGCTA+AGG | + | 8683:145496-145515 | None:intergenic | 45.0% |
| !! | TGAGGAGTGGGTTGTTATCT+TGG | - | 8683:143266-143285 | MS.gene005646:intron | 45.0% |
| !! | TTGTTGAGTGAGGTTGGCTT+TGG | - | 8683:143466-143485 | MS.gene005646:intron | 45.0% |
| !! | TTTTAGGAGAAGCAACCAGC+TGG | + | 8683:145355-145374 | None:intergenic | 45.0% |
| ACCTTGGTTGTTCCGTGATG+CGG | - | 8683:143321-143340 | MS.gene005646:CDS | 50.0% | |
| ACGATGGGATAGTTTCCTGC+AGG | + | 8683:144792-144811 | None:intergenic | 50.0% | |
| AGCAGGAATGGTTGAGGAGT+GGG | - | 8683:143254-143273 | MS.gene005646:intron | 50.0% | |
| AGCAGGTATGATTGAGGGGT+GGG | + | 8683:143631-143650 | None:intergenic | 50.0% | |
| ATCACGGAACAACCAAGGTG+TGG | + | 8683:143320-143339 | None:intergenic | 50.0% | |
| ATCTTGGTTGTTGCGTGGCT+TGG | - | 8683:143282-143301 | MS.gene005646:intron | 50.0% | |
| ATTCCCTGTCTCCTTGAAGC+AGG | - | 8683:142921-142940 | MS.gene005646:CDS | 50.0% | |
| CACTTGCTTGAGACTTAGCC+TGG | + | 8683:144757-144776 | None:intergenic | 50.0% | |
| CAGATGATACTTGGCCGACT+CGG | - | 8683:142806-142825 | MS.gene005646:CDS | 50.0% | |
| CGGAAAGGATGTGTTCACCA+TGG | - | 8683:145427-145446 | MS.gene005646:CDS | 50.0% | |
| CTACCTGCTTCAAGGAGACA+GGG | + | 8683:142927-142946 | None:intergenic | 50.0% | |
| GAACAACCAAGGTGTGGGTT+GGG | + | 8683:143314-143333 | None:intergenic | 50.0% | |
| GAACTTGCCGTCATCAGTTG+AGG | + | 8683:144457-144476 | None:intergenic | 50.0% | |
| GACAAGTGCTACCTGCTTCA+AGG | + | 8683:142935-142954 | None:intergenic | 50.0% | |
| GACAGGGAATGTCAACTTGC+TGG | + | 8683:142911-142930 | None:intergenic | 50.0% | |
| GCACATCCCTCAAAAGCTCA+TGG | + | 8683:142768-142787 | None:intergenic | 50.0% | |
| GCACCTATGTTGGGAAGTTG+AGG | - | 8683:144562-144581 | MS.gene005646:intron | 50.0% | |
| GCGACAACATTCTTCCGAGT+CGG | + | 8683:142823-142842 | None:intergenic | 50.0% | |
| GGCATGAACAACTCCAATGC+TGG | - | 8683:145282-145301 | MS.gene005646:CDS | 50.0% | |
| TCACGGAACAACCAAGGTGT+GGG | + | 8683:143319-143338 | None:intergenic | 50.0% | |
| TCTCCAACTCCTGCAAACAC+CGG | + | 8683:142851-142870 | None:intergenic | 50.0% | |
| TGAATTCCCAACCCACACCT+TGG | - | 8683:143305-143324 | MS.gene005646:CDS | 50.0% | |
| TGGAGTTGTTCATGCCACCT+AGG | + | 8683:145278-145297 | None:intergenic | 50.0% | |
| TTGCTTGAGACTTAGCCTGG+TGG | + | 8683:144754-144773 | None:intergenic | 50.0% | |
| ! | ACATGCCCCATGAGCTTTTG+AGG | - | 8683:142758-142777 | MS.gene005646:CDS | 50.0% |
| ! | CATGCCCCATGAGCTTTTGA+GGG | - | 8683:142759-142778 | MS.gene005646:CDS | 50.0% |
| !! | TGTGACACATGGGTTGGACT+GGG | - | 8683:144329-144348 | MS.gene005646:intron | 50.0% |
| AAGAATGTTGTCGCGTGCGC+CGG | - | 8683:142829-142848 | MS.gene005646:CDS | 55.0% | |
| ACCGCATCACGGAACAACCA+AGG | + | 8683:143325-143344 | None:intergenic | 55.0% | |
| ACCTCCAGGTTCAACAGCTG+AGG | + | 8683:145099-145118 | None:intergenic | 55.0% | |
| AGCTGTTGAACCTGGAGGTG+TGG | - | 8683:145100-145119 | MS.gene005646:intron | 55.0% | |
| ATCATGCAGCCTGGTCCAAG+GGG | - | 8683:144176-144195 | MS.gene005646:intron | 55.0% | |
| ATCTCTGGCAGCACTCACCT+TGG | + | 8683:144271-144290 | None:intergenic | 55.0% | |
| CACTGAATGAGAGAGCCCCT+TGG | + | 8683:144194-144213 | None:intergenic | 55.0% | |
| CAGGTTCAACAGCTGAGGCA+GGG | + | 8683:145094-145113 | None:intergenic | 55.0% | |
| CATCATGCAGCCTGGTCCAA+GGG | - | 8683:144175-144194 | MS.gene005646:intron | 55.0% | |
| GACACTTGCGTGCAGCAAGA+AGG | + | 8683:144479-144498 | None:intergenic | 55.0% | |
| GAGCAGGAATGGTTGAGGAG+TGG | - | 8683:143253-143272 | MS.gene005646:intron | 55.0% | |
| GAGCAGGTATGATTGAGGGG+TGG | + | 8683:143632-143651 | None:intergenic | 55.0% | |
| GCTACCTGCTTCAAGGAGAC+AGG | + | 8683:142928-142947 | None:intergenic | 55.0% | |
| GGAACAACCAAGGTGTGGGT+TGG | + | 8683:143315-143334 | None:intergenic | 55.0% | |
| GTGTCTCCAAGAGTTCCTGC+AGG | - | 8683:144774-144793 | MS.gene005646:intron | 55.0% | |
| TCATCATGCAGCCTGGTCCA+AGG | - | 8683:144174-144193 | MS.gene005646:intron | 55.0% | |
| TTCAACAGCTGAGGCAGGGA+TGG | + | 8683:145090-145109 | None:intergenic | 55.0% | |
| ! | TGAGACTTAGCCTGGTGGTG+CGG | + | 8683:144749-144768 | None:intergenic | 55.0% |
| !! | CTGTGACACATGGGTTGGAC+TGG | - | 8683:144328-144347 | MS.gene005646:intron | 55.0% |
| !! | TGAGGGGTGGGCTGTTACTT+TGG | + | 8683:143619-143638 | None:intergenic | 55.0% |
| ATGAGAGAGCCCCTTGGACC+AGG | + | 8683:144188-144207 | None:intergenic | 60.0% | |
| CCAGGTTCAACAGCTGAGGC+AGG | + | 8683:145095-145114 | None:intergenic | 60.0% | |
| CCTGCCTCAGCTGTTGAACC+TGG | - | 8683:145092-145111 | MS.gene005646:intron | 60.0% | |
| GCCTCAGCTGTTGAACCTGG+AGG | - | 8683:145095-145114 | MS.gene005646:intron | 60.0% | |
| TTGCAAAGTCCCGCACCACC+AGG | - | 8683:144736-144755 | MS.gene005646:intron | 60.0% | |
| ! | GAGACTTAGCCTGGTGGTGC+GGG | + | 8683:144748-144767 | None:intergenic | 60.0% |
| ! | TGGAGTTTCTGAGGAGGCCC+AGG | - | 8683:145376-145395 | MS.gene005646:CDS | 60.0% |
| ! | GCGCCGGTGTTTGCAGGAGT+TGG | - | 8683:142845-142864 | MS.gene005646:CDS | 65.0% |
| ! | TCGCGTGCGCCGGTGTTTGC+AGG | - | 8683:142839-142858 | MS.gene005646:CDS | 70.0% |
| TGCGTCGGGGCCACACCTCC+AGG | + | 8683:145113-145132 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 8683 | gene | 142604 | 145529 | 142604 | ID=MS.gene005646 |
| 8683 | mRNA | 142604 | 145529 | 142604 | ID=MS.gene005646.t1;Parent=MS.gene005646 |
| 8683 | exon | 145191 | 145529 | 145191 | ID=MS.gene005646.t1.exon1;Parent=MS.gene005646.t1 |
| 8683 | CDS | 145191 | 145529 | 145191 | ID=cds.MS.gene005646.t1;Parent=MS.gene005646.t1 |
| 8683 | exon | 143861 | 143948 | 143861 | ID=MS.gene005646.t1.exon2;Parent=MS.gene005646.t1 |
| 8683 | CDS | 143861 | 143948 | 143861 | ID=cds.MS.gene005646.t1;Parent=MS.gene005646.t1 |
| 8683 | exon | 143550 | 143679 | 143550 | ID=MS.gene005646.t1.exon3;Parent=MS.gene005646.t1 |
| 8683 | CDS | 143550 | 143679 | 143550 | ID=cds.MS.gene005646.t1;Parent=MS.gene005646.t1 |
| 8683 | exon | 143286 | 143462 | 143286 | ID=MS.gene005646.t1.exon4;Parent=MS.gene005646.t1 |
| 8683 | CDS | 143286 | 143462 | 143286 | ID=cds.MS.gene005646.t1;Parent=MS.gene005646.t1 |
| 8683 | exon | 142604 | 143078 | 142604 | ID=MS.gene005646.t1.exon5;Parent=MS.gene005646.t1 |
| 8683 | CDS | 142604 | 143078 | 142604 | ID=cds.MS.gene005646.t1;Parent=MS.gene005646.t1 |
| Gene Sequence |
| Protein sequence |
