Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90839.t1 | XP_013470460.1 | 94.3 | 159 | 9 | 0 | 12 | 170 | 54 | 212 | 7.90E-79 | 303.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90839.t1 | Q9FWR4 | 72.3 | 159 | 43 | 1 | 12 | 169 | 54 | 212 | 6.8e-63 | 241.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90839.t1 | I3T9M4 | 94.3 | 159 | 9 | 0 | 12 | 170 | 54 | 212 | 5.7e-79 | 303.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene90839 | 0.80998 | 1.45E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene90839 | 0.801155 | 1.03E-48 | -1.69E-46 |
| MS.gene050226 | MS.gene90839 | 0.815406 | 9.40E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene90839 | 0.838597 | 2.62E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene90839 | 0.824375 | 8.35E-54 | -1.69E-46 |
| MS.gene050303 | MS.gene90839 | 0.800421 | 1.45E-48 | -1.69E-46 |
| MS.gene050330 | MS.gene90839 | -0.816413 | 5.60E-52 | -1.69E-46 |
| MS.gene050438 | MS.gene90839 | 0.801996 | 6.92E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene90839 | -0.864919 | 8.60E-65 | -1.69E-46 |
| MS.gene050642 | MS.gene90839 | 0.812021 | 5.23E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene90839 | 0.819442 | 1.16E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene90839 | 0.821093 | 4.85E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene90839 | 0.825996 | 3.46E-54 | -1.69E-46 |
| MS.gene050762 | MS.gene90839 | 0.820454 | 6.80E-53 | -1.69E-46 |
| MS.gene050763 | MS.gene90839 | 0.825943 | 3.56E-54 | -1.69E-46 |
| MS.gene050815 | MS.gene90839 | 0.837159 | 6.13E-57 | -1.69E-46 |
| MS.gene051860 | MS.gene90839 | 0.821293 | 4.36E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene90839 | 0.817661 | 2.94E-52 | -1.69E-46 |
| MS.gene052012 | MS.gene90839 | 0.824996 | 5.96E-54 | -1.69E-46 |
| MS.gene052309 | MS.gene90839 | -0.812109 | 5.00E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene90839 | 0.83364 | 4.75E-56 | -1.69E-46 |
| MS.gene053216 | MS.gene90839 | 0.800457 | 1.43E-48 | -1.69E-46 |
| MS.gene054184 | MS.gene90839 | 0.812934 | 3.30E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene90839 | 0.807337 | 5.31E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene90839 | 0.817981 | 2.49E-52 | -1.69E-46 |
| MS.gene054542 | MS.gene90839 | 0.830686 | 2.55E-55 | -1.69E-46 |
| MS.gene05468 | MS.gene90839 | 0.819615 | 1.06E-52 | -1.69E-46 |
| MS.gene056552 | MS.gene90839 | 0.807174 | 5.75E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene90839 | 0.819972 | 8.77E-53 | -1.69E-46 |
| MS.gene058084 | MS.gene90839 | 0.801649 | 8.15E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene90839 | 0.807482 | 4.95E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene90839 | 0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene059609 | MS.gene90839 | 0.821022 | 5.03E-53 | -1.69E-46 |
| MS.gene060323 | MS.gene90839 | 0.801672 | 8.06E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene90839 | 0.800175 | 1.63E-48 | -1.69E-46 |
| MS.gene060802 | MS.gene90839 | 0.819957 | 8.84E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene90839 | 0.84063 | 7.75E-58 | -1.69E-46 |
| MS.gene061040 | MS.gene90839 | -0.804827 | 1.79E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90839.t1 | MTR_1g115500 | 94.340 | 159 | 9 | 0 | 12 | 170 | 54 | 212 | 1.74e-106 | 303 |
| MS.gene90839.t1 | MTR_3g066060 | 58.599 | 157 | 65 | 0 | 12 | 168 | 106 | 262 | 4.13e-66 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90839.t1 | AT1G19570 | 72.327 | 159 | 43 | 1 | 12 | 169 | 54 | 212 | 5.23e-81 | 239 |
| MS.gene90839.t1 | AT1G75270 | 71.250 | 160 | 45 | 1 | 12 | 170 | 54 | 213 | 8.38e-79 | 233 |
| MS.gene90839.t1 | AT5G16710 | 62.420 | 157 | 59 | 0 | 12 | 168 | 100 | 256 | 2.02e-69 | 211 |
| MS.gene90839.t1 | AT1G19550 | 58.491 | 159 | 41 | 2 | 12 | 169 | 18 | 152 | 4.70e-60 | 184 |
Find 47 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCAAGTTTGATGGTAAA+TGG | 0.194555 | 1.4:-87693552 | MS.gene90839:CDS |
| TTGGACTATTCCTGAGAATT+TGG | 0.207787 | 1.4:-87692837 | MS.gene90839:CDS |
| ATTTCAGGGGATCAAATATA+TGG | 0.237821 | 1.4:-87693158 | MS.gene90839:intron |
| CACAGCTGTTGATTTGAGTT+TGG | 0.323954 | 1.4:-87692906 | MS.gene90839:CDS |
| CTACTTCATGCATTGACCTT+TGG | 0.348598 | 1.4:+87691146 | None:intergenic |
| CCTGATTCTGATGTTATTGT+TGG | 0.361346 | 1.4:-87693526 | MS.gene90839:CDS |
| TGCTTTGGATGAACATCTTA+AGG | 0.363226 | 1.4:-87693061 | MS.gene90839:CDS |
| ACCACTAGATGGTACAGTTT+TGG | 0.363899 | 1.4:+87692881 | None:intergenic |
| TAACAGGGTCCATTTGTTGC+TGG | 0.379644 | 1.4:-87692938 | MS.gene90839:intron |
| GTTAGCAGAACTCAATGCTT+TGG | 0.381868 | 1.4:-87693076 | MS.gene90839:CDS |
| GTTCCAGTGGTCAAGTTTGA+TGG | 0.383379 | 1.4:-87693559 | MS.gene90839:CDS |
| TGGACCTTTGCCAAATTCTC+AGG | 0.406140 | 1.4:+87692827 | None:intergenic |
| AACAGGGTCCATTTGTTGCT+GGG | 0.421851 | 1.4:-87692937 | MS.gene90839:intron |
| GACATACTCCTCTGCAGCCT+TGG | 0.421971 | 1.4:+87691184 | None:intergenic |
| GCAGAGGAGTATGTCATTGC+TGG | 0.422618 | 1.4:-87691176 | MS.gene90839:CDS |
| GGAGAAACAAGAGATGGTTC+AGG | 0.422879 | 1.4:+87693484 | None:intergenic |
| ACCTTCTCCCCAGCAACAAA+TGG | 0.454458 | 1.4:+87692929 | None:intergenic |
| GGTCAAGTTTGATGGTAAAT+GGG | 0.460396 | 1.4:-87693551 | MS.gene90839:CDS |
| TGAATCCTTGCTCTTCAGAA+AGG | 0.466931 | 1.4:+87693122 | None:intergenic |
| CCAACAATAACATCAGAATC+AGG | 0.477453 | 1.4:+87693526 | None:intergenic |
| GGCTCTTGAGGTTGCTGTCA+AGG | 0.478726 | 1.4:-87693926 | MS.gene90839:CDS |
| ACCACTGGAACCTTCCCTCC+AGG | 0.482366 | 1.4:+87693571 | None:intergenic |
| AAGAGCAAGGATTCAAATGA+TGG | 0.484327 | 1.4:-87693114 | MS.gene90839:CDS |
| TCCATTTGTTGCTGGGGAGA+AGG | 0.485126 | 1.4:-87692930 | MS.gene90839:CDS |
| GACCAAGTGCTACCACTAGA+TGG | 0.490749 | 1.4:+87692870 | None:intergenic |
| CGTGACCTTTCTGAAGAGCA+AGG | 0.493675 | 1.4:-87693127 | MS.gene90839:CDS |
| TTACCATCAAACTTGACCAC+TGG | 0.501479 | 1.4:+87693556 | None:intergenic |
| GTTGCTGTCAAGGCTGCTGT+TGG | 0.509413 | 1.4:-87693916 | MS.gene90839:intron |
| CACTTGGTCACTTCAAGAGT+TGG | 0.517047 | 1.4:-87692856 | MS.gene90839:CDS |
| TTTCAGGGGATCAAATATAT+GGG | 0.518607 | 1.4:-87693157 | MS.gene90839:intron |
| TACACTGAGGAAAATTGAGC+AGG | 0.548119 | 1.4:+87693463 | None:intergenic |
| AGGAGTATGTCATTGCTGGA+TGG | 0.548576 | 1.4:-87691172 | MS.gene90839:CDS |
| CATTGCTGGATGGGCACCAA+AGG | 0.555766 | 1.4:-87691162 | MS.gene90839:CDS |
| ATCATCGCAAATGGCTCTTG+AGG | 0.559050 | 1.4:-87693938 | None:intergenic |
| GGAAGTGAATCCTGGAGGGA+AGG | 0.560932 | 1.4:-87693581 | MS.gene90839:intron |
| GAGAAACAAGAGATGGTTCA+GGG | 0.568330 | 1.4:+87693485 | None:intergenic |
| GGAGTATGTCATTGCTGGAT+GGG | 0.575558 | 1.4:-87691171 | MS.gene90839:CDS |
| CGAGAAAACCAAGGCTGCAG+AGG | 0.575652 | 1.4:-87691192 | MS.gene90839:CDS |
| ACAGGGTCCATTTGTTGCTG+GGG | 0.596245 | 1.4:-87692936 | MS.gene90839:intron |
| TACCATCTAGTGGTAGCACT+TGG | 0.606458 | 1.4:-87692872 | MS.gene90839:CDS |
| TCCTGGAGGGAAGGTTCCAG+TGG | 0.613379 | 1.4:-87693572 | MS.gene90839:CDS |
| TATTCCTGAGAATTTGGCAA+AGG | 0.623001 | 1.4:-87692831 | MS.gene90839:CDS |
| TTTGTACCTTGATGTAGTTG+TGG | 0.632536 | 1.4:+87692807 | None:intergenic |
| AAAGGTCCACAACTACATCA+AGG | 0.634770 | 1.4:-87692813 | MS.gene90839:intron |
| TGAGCAGGAGAAACAAGAGA+TGG | 0.641215 | 1.4:+87693478 | None:intergenic |
| ACCAAAACTGTACCATCTAG+TGG | 0.659489 | 1.4:-87692882 | MS.gene90839:CDS |
| TGAATCATTCGAGAAAACCA+AGG | 0.685046 | 1.4:-87691201 | MS.gene90839:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATAAATAATATATTACA+CGG | + | chr1.4:87693628-87693647 | None:intergenic | 10.0% |
| !!! | AATCAAATTTTGAAATTTAA+AGG | + | chr1.4:87693495-87693514 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTAGAGAAAA+GGG | + | chr1.4:87693080-87693099 | None:intergenic | 10.0% |
| !! | ATAAATTCACATATATACAT+TGG | + | chr1.4:87692044-87692063 | None:intergenic | 15.0% |
| !!! | AAATTTTGAAATTTAAAGGA+GGG | + | chr1.4:87693491-87693510 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTTTAGAGAAA+AGG | + | chr1.4:87693081-87693100 | None:intergenic | 15.0% |
| !!! | TTAATAGGTTATATAACTTT+TGG | - | chr1.4:87693567-87693586 | MS.gene90839:CDS | 15.0% |
| !!! | TTTATTTATTTGTAGGTTTT+TGG | - | chr1.4:87691477-87691496 | MS.gene90839:intron | 15.0% |
| !!! | TTTGAAAGTATAAAAATAGA+GGG | + | chr1.4:87691660-87691679 | None:intergenic | 15.0% |
| !!! | TTTTATTTCTTTGAATTTTG+TGG | - | chr1.4:87691434-87691453 | MS.gene90839:intron | 15.0% |
| !!! | TTTTTTTTTTTAGAGAAAAG+GGG | + | chr1.4:87693079-87693098 | None:intergenic | 15.0% |
| !! | ACATTTCCAATATCAAATTA+TGG | - | chr1.4:87692681-87692700 | MS.gene90839:intron | 20.0% |
| !! | CATTTCCAATATCAAATTAT+GGG | - | chr1.4:87692682-87692701 | MS.gene90839:intron | 20.0% |
| !! | TATATGAATTGATTGATTGA+TGG | - | chr1.4:87693821-87693840 | MS.gene90839:intron | 20.0% |
| !! | TATGCTAAAAAAATGTTACA+TGG | + | chr1.4:87692975-87692994 | None:intergenic | 20.0% |
| !! | TCATCACATTATTAGTTAAT+AGG | - | chr1.4:87693552-87693571 | MS.gene90839:CDS | 20.0% |
| !!! | AATTTTGAAATTTAAAGGAG+GGG | + | chr1.4:87693490-87693509 | None:intergenic | 20.0% |
| !!! | ATGTTACTTTCTATATTTTG+TGG | - | chr1.4:87691726-87691745 | MS.gene90839:intron | 20.0% |
| !!! | CAAATTTTGAAATTTAAAGG+AGG | + | chr1.4:87693492-87693511 | None:intergenic | 20.0% |
| !!! | GTTTGAAAGTATAAAAATAG+AGG | + | chr1.4:87691661-87691680 | None:intergenic | 20.0% |
| !!! | TGTTACTTTCTATATTTTGT+GGG | - | chr1.4:87691727-87691746 | MS.gene90839:intron | 20.0% |
| !!! | TTTCATTTGTTTTCATTTTC+AGG | - | chr1.4:87691278-87691297 | MS.gene90839:intron | 20.0% |
| !!! | TTTCATTTTTTTGGATAAAG+TGG | + | chr1.4:87693103-87693122 | None:intergenic | 20.0% |
| ! | AAATACATCAATACTCCTAA+AGG | + | chr1.4:87693681-87693700 | None:intergenic | 25.0% |
| ! | AAGTACAACAAAAAAACAGT+TGG | + | chr1.4:87692448-87692467 | None:intergenic | 25.0% |
| ! | ATGGATGTAATCTTATCTTA+TGG | - | chr1.4:87692308-87692327 | MS.gene90839:intron | 25.0% |
| ! | ATTGTAGAAGTTGACAATTA+GGG | - | chr1.4:87693261-87693280 | MS.gene90839:intron | 25.0% |
| ! | CAAGTGATTAAATTTATCTC+TGG | - | chr1.4:87692997-87693016 | MS.gene90839:intron | 25.0% |
| ! | GTTAATTAGCTATCAATTAC+AGG | + | chr1.4:87692099-87692118 | None:intergenic | 25.0% |
| ! | TCATAAATCAAAGAAACAAC+AGG | + | chr1.4:87693355-87693374 | None:intergenic | 25.0% |
| ! | TTAATCAAATGGATGTTGTA+TGG | + | chr1.4:87691350-87691369 | None:intergenic | 25.0% |
| ! | TTATGAAGAAAATTCAAGTG+TGG | + | chr1.4:87692477-87692496 | None:intergenic | 25.0% |
| !! | ATTGGATAGAGATTTCTTTT+AGG | - | chr1.4:87692876-87692895 | MS.gene90839:CDS | 25.0% |
| !! | GTTGTAGGTATTGTAAATTA+AGG | + | chr1.4:87693740-87693759 | None:intergenic | 25.0% |
| !!! | AAGCATGCTTTTCATTTTTT+TGG | + | chr1.4:87693112-87693131 | None:intergenic | 25.0% |
| !!! | GGGTTTTAAATCTTACATAT+TGG | - | chr1.4:87692858-87692877 | MS.gene90839:CDS | 25.0% |
| !!! | TACAAAGTTGTTTTCTGTAA+TGG | - | chr1.4:87692289-87692308 | MS.gene90839:intron | 25.0% |
| !!! | TTTTTTTCAGCAAATGCAAA+AGG | + | chr1.4:87693768-87693787 | None:intergenic | 25.0% |
| AATCGTGAAAAATGTAGAAC+CGG | + | chr1.4:87691259-87691278 | None:intergenic | 30.0% | |
| AATTGTCAACTTCTACAATC+TGG | + | chr1.4:87693260-87693279 | None:intergenic | 30.0% | |
| ATATATCGAGTTAGACCTTT+AGG | - | chr1.4:87693663-87693682 | MS.gene90839:intron | 30.0% | |
| ATCTTCAGACTTAAAGTTGA+TGG | + | chr1.4:87693434-87693453 | None:intergenic | 30.0% | |
| ATTTCAGGGGATCAAATATA+TGG | - | chr1.4:87691921-87691940 | MS.gene90839:intron | 30.0% | |
| GATATGGATGAAAGATGTAT+GGG | + | chr1.4:87692762-87692781 | None:intergenic | 30.0% | |
| GATTGTAGAAGTTGACAATT+AGG | - | chr1.4:87693260-87693279 | MS.gene90839:intron | 30.0% | |
| GCAAACCCATAATTTGATAT+TGG | + | chr1.4:87692690-87692709 | None:intergenic | 30.0% | |
| TAAAGTCTGAACTTAAAGCT+GGG | - | chr1.4:87692838-87692857 | MS.gene90839:CDS | 30.0% | |
| TACCTAAGAGATTCATTGTA+TGG | + | chr1.4:87693709-87693728 | None:intergenic | 30.0% | |
| TAGTTCACATTAACTAGTCA+TGG | - | chr1.4:87693307-87693326 | MS.gene90839:intron | 30.0% | |
| TATATTACACGGATTCAATG+TGG | + | chr1.4:87693617-87693636 | None:intergenic | 30.0% | |
| TGATATGGATGAAAGATGTA+TGG | + | chr1.4:87692763-87692782 | None:intergenic | 30.0% | |
| TGTCGGAGATATTAATCAAA+TGG | + | chr1.4:87691361-87691380 | None:intergenic | 30.0% | |
| TTAAAGTCTGAACTTAAAGC+TGG | - | chr1.4:87692837-87692856 | MS.gene90839:CDS | 30.0% | |
| TTGAATACCATCTTGCAAAT+GGG | + | chr1.4:87691696-87691715 | None:intergenic | 30.0% | |
| TTTCAGGGGATCAAATATAT+GGG | - | chr1.4:87691922-87691941 | MS.gene90839:intron | 30.0% | |
| ! | AGTTGAATTTAGAGTACCAT+TGG | + | chr1.4:87691388-87691407 | None:intergenic | 30.0% |
| ! | GTTGAATTTAGAGTACCATT+GGG | + | chr1.4:87691387-87691406 | None:intergenic | 30.0% |
| ! | TTGAATTTAGAGTACCATTG+GGG | + | chr1.4:87691386-87691405 | None:intergenic | 30.0% |
| ! | TTTCTATATTTTGTGGGATG+AGG | - | chr1.4:87691733-87691752 | MS.gene90839:intron | 30.0% |
| !! | AATTATGCGTGGCTATTTTA+GGG | - | chr1.4:87692903-87692922 | MS.gene90839:CDS | 30.0% |
| !! | CTGAGATTTATTTCTGTTAC+CGG | - | chr1.4:87691237-87691256 | MS.gene90839:intron | 30.0% |
| !! | GTACTTCAATCGTTTTGATA+TGG | + | chr1.4:87692778-87692797 | None:intergenic | 30.0% |
| !!! | GTATACATGCTTGTTTTGAT+TGG | - | chr1.4:87691795-87691814 | MS.gene90839:intron | 30.0% |
| !!! | TCTTTGTTTTAAAGCAAAGC+TGG | - | chr1.4:87692609-87692628 | MS.gene90839:intron | 30.0% |
| !!! | TTTTTTTTAGAGAAAAGGGG+AGG | + | chr1.4:87693076-87693095 | None:intergenic | 30.0% |
| AAGAGCAAGGATTCAAATGA+TGG | - | chr1.4:87691965-87691984 | MS.gene90839:intron | 35.0% | |
| AATTAACCACACTAACATGC+TGG | - | chr1.4:87692112-87692131 | MS.gene90839:intron | 35.0% | |
| ACGCAAAAGACATGACTAAA+AGG | + | chr1.4:87692337-87692356 | None:intergenic | 35.0% | |
| CAAAGTTAAGAGAACCCTTT+GGG | + | chr1.4:87691312-87691331 | None:intergenic | 35.0% | |
| CCAACAATAACATCAGAATC+AGG | + | chr1.4:87691556-87691575 | None:intergenic | 35.0% | |
| CCTGATTCTGATGTTATTGT+TGG | - | chr1.4:87691553-87691572 | MS.gene90839:intron | 35.0% | |
| CGCAAAAGACATGACTAAAA+GGG | + | chr1.4:87692336-87692355 | None:intergenic | 35.0% | |
| CTTGAATACCATCTTGCAAA+TGG | + | chr1.4:87691697-87691716 | None:intergenic | 35.0% | |
| GGTGAGTTAAGAAATAGAGA+AGG | + | chr1.4:87693055-87693074 | None:intergenic | 35.0% | |
| GTCCATACAATGAATCTCTT+AGG | - | chr1.4:87693704-87693723 | MS.gene90839:intron | 35.0% | |
| TATTCCTGAGAATTTGGCAA+AGG | - | chr1.4:87692248-87692267 | MS.gene90839:intron | 35.0% | |
| TCACGATGTTCACAATTTCA+GGG | - | chr1.4:87691907-87691926 | MS.gene90839:intron | 35.0% | |
| TGAATACCATCTTGCAAATG+GGG | + | chr1.4:87691695-87691714 | None:intergenic | 35.0% | |
| TGAATCATTCGAGAAAACCA+AGG | - | chr1.4:87693878-87693897 | MS.gene90839:intron | 35.0% | |
| TGTAGTCAACATAAAGTGTG+TGG | - | chr1.4:87692538-87692557 | MS.gene90839:intron | 35.0% | |
| TTCACAGCTGTTCAATTCAA+TGG | + | chr1.4:87692362-87692381 | None:intergenic | 35.0% | |
| TTCACGATGTTCACAATTTC+AGG | - | chr1.4:87691906-87691925 | MS.gene90839:intron | 35.0% | |
| TTGGACTATTCCTGAGAATT+TGG | - | chr1.4:87692242-87692261 | MS.gene90839:intron | 35.0% | |
| TTTGTACCTTGATGTAGTTG+TGG | + | chr1.4:87692275-87692294 | None:intergenic | 35.0% | |
| ! | AGTTCAATGAAGCATCAGTA+AGG | + | chr1.4:87693204-87693223 | None:intergenic | 35.0% |
| ! | ATGCAAAAGGCTTTAGTTGT+AGG | + | chr1.4:87693755-87693774 | None:intergenic | 35.0% |
| ! | CAATTTGCTTCTGGAAAGAT+TGG | + | chr1.4:87692649-87692668 | None:intergenic | 35.0% |
| ! | GGTCAAGTTTGATGGTAAAT+GGG | - | chr1.4:87691528-87691547 | MS.gene90839:intron | 35.0% |
| ! | GTTCAATGAAGCATCAGTAA+GGG | + | chr1.4:87693203-87693222 | None:intergenic | 35.0% |
| ! | TGCTTTGGATGAACATCTTA+AGG | - | chr1.4:87692018-87692037 | MS.gene90839:intron | 35.0% |
| ! | TGGTCAAGTTTGATGGTAAA+TGG | - | chr1.4:87691527-87691546 | MS.gene90839:intron | 35.0% |
| ! | TGTGAACATCAATTTGCTTC+TGG | + | chr1.4:87692658-87692677 | None:intergenic | 35.0% |
| !! | AACTACATGATGGCATTGAT+TGG | - | chr1.4:87692382-87692401 | MS.gene90839:intron | 35.0% |
| !! | CAATTATGCGTGGCTATTTT+AGG | - | chr1.4:87692902-87692921 | MS.gene90839:CDS | 35.0% |
| !! | CATGCTTTTCTTATTTGCCA+GGG | - | chr1.4:87693125-87693144 | MS.gene90839:CDS | 35.0% |
| !! | TGCTGGTGTCATGAAAAAAT+TGG | - | chr1.4:87692716-87692735 | MS.gene90839:intron | 35.0% |
| !! | TGGTGTCATGAAAAAATTGG+TGG | - | chr1.4:87692719-87692738 | MS.gene90839:intron | 35.0% |
| !! | TTTTAGGTCTCAATTATGCG+TGG | - | chr1.4:87692892-87692911 | MS.gene90839:CDS | 35.0% |
| AAAGGTCCACAACTACATCA+AGG | - | chr1.4:87692266-87692285 | MS.gene90839:intron | 40.0% | |
| ACCAAAACTGTACCATCTAG+TGG | - | chr1.4:87692197-87692216 | MS.gene90839:intron | 40.0% | |
| ACTATTCCCCATTTGCAAGA+TGG | - | chr1.4:87691686-87691705 | MS.gene90839:intron | 40.0% | |
| CACGATGTTCACAATTTCAG+GGG | - | chr1.4:87691908-87691927 | MS.gene90839:intron | 40.0% | |
| CAGCTGTGAAAACTACATGA+TGG | - | chr1.4:87692372-87692391 | MS.gene90839:intron | 40.0% | |
| CCAAAGGGTTCTCTTAACTT+TGG | - | chr1.4:87691310-87691329 | MS.gene90839:intron | 40.0% | |
| CCAAAGTTAAGAGAACCCTT+TGG | + | chr1.4:87691313-87691332 | None:intergenic | 40.0% | |
| GAGAAACAAGAGATGGTTCA+GGG | + | chr1.4:87691597-87691616 | None:intergenic | 40.0% | |
| GGATAATTAAGAGTGAACCC+TGG | + | chr1.4:87693145-87693164 | None:intergenic | 40.0% | |
| GTCAACATAAAGTGTGTGGA+AGG | - | chr1.4:87692542-87692561 | MS.gene90839:intron | 40.0% | |
| GTTAGCAGAACTCAATGCTT+TGG | - | chr1.4:87692003-87692022 | MS.gene90839:intron | 40.0% | |
| TACACTGAGGAAAATTGAGC+AGG | + | chr1.4:87691619-87691638 | None:intergenic | 40.0% | |
| TATCCTGCTTGACATGTACA+TGG | - | chr1.4:87693160-87693179 | MS.gene90839:intron | 40.0% | |
| TGAATCCTTGCTCTTCAGAA+AGG | + | chr1.4:87691960-87691979 | None:intergenic | 40.0% | |
| TGATGTGATGTCATACACTG+AGG | + | chr1.4:87691632-87691651 | None:intergenic | 40.0% | |
| TGGATGAAAGATGTATGGGA+AGG | + | chr1.4:87692758-87692777 | None:intergenic | 40.0% | |
| TTACCATCAAACTTGACCAC+TGG | + | chr1.4:87691526-87691545 | None:intergenic | 40.0% | |
| ! | AAGAGAACCCTTTGGGAAAA+TGG | + | chr1.4:87691305-87691324 | None:intergenic | 40.0% |
| ! | ACCACTAGATGGTACAGTTT+TGG | + | chr1.4:87692201-87692220 | None:intergenic | 40.0% |
| ! | TGCTTGGCAATGAGAACTTT+TGG | - | chr1.4:87692405-87692424 | MS.gene90839:intron | 40.0% |
| ! | TTCAGGTCCATTTTCCCAAA+GGG | - | chr1.4:87691295-87691314 | MS.gene90839:intron | 40.0% |
| !! | AACATGCTGGAGGTATTAAC+AGG | - | chr1.4:87692125-87692144 | MS.gene90839:intron | 40.0% |
| !! | ACATGCTGGAGGTATTAACA+GGG | - | chr1.4:87692126-87692145 | MS.gene90839:intron | 40.0% |
| !! | AGGTTTTTGGAAGTGAATCC+TGG | - | chr1.4:87691490-87691509 | MS.gene90839:intron | 40.0% |
| !! | CACAGCTGTTGATTTGAGTT+TGG | - | chr1.4:87692173-87692192 | MS.gene90839:intron | 40.0% |
| !! | GCATGCTTTTCTTATTTGCC+AGG | - | chr1.4:87693124-87693143 | MS.gene90839:CDS | 40.0% |
| !! | TTTCAGGTCCATTTTCCCAA+AGG | - | chr1.4:87691294-87691313 | MS.gene90839:intron | 40.0% |
| !! | TTTTGGAAGTGAATCCTGGA+GGG | - | chr1.4:87691494-87691513 | MS.gene90839:intron | 40.0% |
| !! | TTTTTGGAAGTGAATCCTGG+AGG | - | chr1.4:87691493-87691512 | MS.gene90839:intron | 40.0% |
| ATACCTCCAGCATGTTAGTG+TGG | + | chr1.4:87692121-87692140 | None:intergenic | 45.0% | |
| ATATCTCCGACAAACCCCAA+TGG | - | chr1.4:87691369-87691388 | MS.gene90839:intron | 45.0% | |
| CACTTGGTCACTTCAAGAGT+TGG | - | chr1.4:87692223-87692242 | MS.gene90839:intron | 45.0% | |
| CTTCCATGTACATGTCAAGC+AGG | + | chr1.4:87693166-87693185 | None:intergenic | 45.0% | |
| GGAGAAACAAGAGATGGTTC+AGG | + | chr1.4:87691598-87691617 | None:intergenic | 45.0% | |
| GGAGTATGTCATTGCTGGAT+GGG | - | chr1.4:87693908-87693927 | MS.gene90839:intron | 45.0% | |
| GTTCCAGTGGTCAAGTTTGA+TGG | - | chr1.4:87691520-87691539 | MS.gene90839:intron | 45.0% | |
| TAACCACACTAACATGCTGG+AGG | - | chr1.4:87692115-87692134 | MS.gene90839:intron | 45.0% | |
| TACCATCTAGTGGTAGCACT+TGG | - | chr1.4:87692207-87692226 | MS.gene90839:intron | 45.0% | |
| TGAGCAGGAGAAACAAGAGA+TGG | + | chr1.4:87691604-87691623 | None:intergenic | 45.0% | |
| TGGACCTTTGCCAAATTCTC+AGG | + | chr1.4:87692255-87692274 | None:intergenic | 45.0% | |
| TTGTGGGATGAGGAATCTGA+GGG | - | chr1.4:87691743-87691762 | MS.gene90839:intron | 45.0% | |
| TTTGTGGGATGAGGAATCTG+AGG | - | chr1.4:87691742-87691761 | MS.gene90839:intron | 45.0% | |
| ! | AACAGGGTCCATTTGTTGCT+GGG | - | chr1.4:87692142-87692161 | MS.gene90839:intron | 45.0% |
| ! | AGAGTACCATTGGGGTTTGT+CGG | + | chr1.4:87691378-87691397 | None:intergenic | 45.0% |
| ! | AGGAGTATGTCATTGCTGGA+TGG | - | chr1.4:87693907-87693926 | MS.gene90839:intron | 45.0% |
| ! | TAACAGGGTCCATTTGTTGC+TGG | - | chr1.4:87692141-87692160 | MS.gene90839:intron | 45.0% |
| !! | TATGGGTTTGCTATGCTTGC+TGG | - | chr1.4:87692699-87692718 | MS.gene90839:intron | 45.0% |
| !! | TGATGGCATTGATTGGTGCT+TGG | - | chr1.4:87692389-87692408 | MS.gene90839:intron | 45.0% |
| !! | TTAAAAATTTAACAAAAATA+AGG | + | chr1.4:87692076-87692095 | None:intergenic | 5.0% |
| !! | TTATTTATTTATTTATTTGT+AGG | - | chr1.4:87691470-87691489 | MS.gene90839:intron | 5.0% |
| ACCTTCTCCCCAGCAACAAA+TGG | + | chr1.4:87692153-87692172 | None:intergenic | 50.0% | |
| GACCAAGTGCTACCACTAGA+TGG | + | chr1.4:87692212-87692231 | None:intergenic | 50.0% | |
| GTACAGTCTCCGAGAACAGT+TGG | + | chr1.4:87691193-87691212 | None:intergenic | 50.0% | |
| ! | ACAGGGTCCATTTGTTGCTG+GGG | - | chr1.4:87692143-87692162 | MS.gene90839:intron | 50.0% |
| ! | CGTGACCTTTCTGAAGAGCA+AGG | - | chr1.4:87691952-87691971 | MS.gene90839:intron | 50.0% |
| ! | GCAGAGGAGTATGTCATTGC+TGG | - | chr1.4:87693903-87693922 | MS.gene90839:intron | 50.0% |
| ! | GTTGGTGCTCCAACTGTTCT+CGG | - | chr1.4:87691181-87691200 | MS.gene90839:CDS | 50.0% |
| ! | TCCATTTGTTGCTGGGGAGA+AGG | - | chr1.4:87692149-87692168 | MS.gene90839:intron | 50.0% |
| AGGGGAAGAAGACACTGCAG+TGG | + | chr1.4:87693472-87693491 | None:intergenic | 55.0% | |
| CATTGCTGGATGGGCACCAA+AGG | - | chr1.4:87693917-87693936 | MS.gene90839:CDS | 55.0% | |
| CGAGAAAACCAAGGCTGCAG+AGG | - | chr1.4:87693887-87693906 | MS.gene90839:intron | 55.0% | |
| GACATACTCCTCTGCAGCCT+TGG | + | chr1.4:87693898-87693917 | None:intergenic | 55.0% | |
| GAGGAATCTGAGGGAGACTG+TGG | - | chr1.4:87691752-87691771 | MS.gene90839:intron | 55.0% | |
| GGAAGTGAATCCTGGAGGGA+AGG | - | chr1.4:87691498-87691517 | MS.gene90839:intron | 55.0% | |
| GGCTCTTGAGGTTGCTGTCA+AGG | - | chr1.4:87691153-87691172 | MS.gene90839:CDS | 55.0% | |
| GTTGCTGTCAAGGCTGCTGT+TGG | - | chr1.4:87691163-87691182 | MS.gene90839:CDS | 55.0% | |
| TGTGTACACCTGCACGCACA+AGG | - | chr1.4:87693408-87693427 | MS.gene90839:intron | 55.0% | |
| ACCACTGGAACCTTCCCTCC+AGG | + | chr1.4:87691511-87691530 | None:intergenic | 60.0% | |
| TCCTGGAGGGAAGGTTCCAG+TGG | - | chr1.4:87691507-87691526 | MS.gene90839:intron | 60.0% | |
| !! | GTTGATGGCCTTGTGCGTGC+AGG | + | chr1.4:87693419-87693438 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87691151 | 87693950 | 87691151 | ID=MS.gene90839 |
| chr1.4 | mRNA | 87691151 | 87693950 | 87691151 | ID=MS.gene90839.t1;Parent=MS.gene90839 |
| chr1.4 | exon | 87693917 | 87693950 | 87693917 | ID=MS.gene90839.t1.exon1;Parent=MS.gene90839.t1 |
| chr1.4 | CDS | 87693917 | 87693950 | 87693917 | ID=cds.MS.gene90839.t1;Parent=MS.gene90839.t1 |
| chr1.4 | exon | 87693466 | 87693598 | 87693466 | ID=MS.gene90839.t1.exon2;Parent=MS.gene90839.t1 |
| chr1.4 | CDS | 87693466 | 87693598 | 87693466 | ID=cds.MS.gene90839.t1;Parent=MS.gene90839.t1 |
| chr1.4 | exon | 87693056 | 87693173 | 87693056 | ID=MS.gene90839.t1.exon3;Parent=MS.gene90839.t1 |
| chr1.4 | CDS | 87693056 | 87693173 | 87693056 | ID=cds.MS.gene90839.t1;Parent=MS.gene90839.t1 |
| chr1.4 | exon | 87692814 | 87692954 | 87692814 | ID=MS.gene90839.t1.exon4;Parent=MS.gene90839.t1 |
| chr1.4 | CDS | 87692814 | 87692954 | 87692814 | ID=cds.MS.gene90839.t1;Parent=MS.gene90839.t1 |
| chr1.4 | exon | 87691151 | 87691237 | 87691151 | ID=MS.gene90839.t1.exon5;Parent=MS.gene90839.t1 |
| chr1.4 | CDS | 87691151 | 87691237 | 87691151 | ID=cds.MS.gene90839.t1;Parent=MS.gene90839.t1 |
| Gene Sequence |
| Protein sequence |
