Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06054.t1 | KEH21195.1 | 72.7 | 689 | 45 | 4 | 1 | 689 | 1 | 546 | 4.20E-187 | 664.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06054.t1 | A0A072U5S1 | 72.7 | 689 | 45 | 4 | 1 | 689 | 1 | 546 | 3.0e-187 | 664.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06054 | MS.gene50540 | PPI |
| MS.gene06054 | MS.gene047578 | PPI |
| MS.gene06054 | MS.gene43392 | PPI |
| MS.gene06054 | MS.gene054884 | PPI |
| MS.gene06054 | MS.gene90400 | PPI |
| MS.gene06054 | MS.gene40883 | PPI |
| MS.gene06054 | MS.gene39948 | PPI |
| MS.gene54368 | MS.gene06054 | PPI |
| MS.gene06054 | MS.gene002442 | PPI |
| MS.gene06054 | MS.gene44133 | PPI |
| MS.gene06054 | MS.gene01091 | PPI |
| MS.gene06054 | MS.gene91179 | PPI |
| MS.gene06054 | MS.gene071322 | PPI |
| MS.gene020278 | MS.gene06054 | PPI |
| MS.gene06054 | MS.gene056066 | PPI |
| MS.gene06054 | MS.gene065848 | PPI |
| MS.gene06054 | MS.gene056067 | PPI |
| MS.gene005262 | MS.gene06054 | PPI |
| MS.gene06054 | MS.gene91529 | PPI |
| MS.gene06054 | MS.gene036192 | PPI |
| MS.gene06054 | MS.gene01425 | PPI |
| MS.gene06054 | MS.gene60920 | PPI |
| MS.gene06054 | MS.gene92243 | PPI |
| MS.gene06054 | MS.gene005205 | PPI |
| MS.gene06054 | MS.gene49380 | PPI |
| MS.gene06054 | MS.gene018136 | PPI |
| MS.gene06054 | MS.gene44072 | PPI |
| MS.gene06054 | MS.gene97766 | PPI |
| MS.gene06054 | MS.gene96757 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06054.t1 | MTR_8g099280 | 63.425 | 689 | 109 | 10 | 1 | 689 | 1 | 546 | 0.0 | 717 |
| MS.gene06054.t1 | MTR_8g099275 | 64.908 | 436 | 121 | 1 | 286 | 689 | 788 | 1223 | 2.96e-162 | 499 |
| MS.gene06054.t1 | MTR_8g099275 | 68.657 | 67 | 21 | 0 | 159 | 225 | 21 | 87 | 4.46e-21 | 99.4 |
| MS.gene06054.t1 | MTR_8g099275 | 62.500 | 64 | 22 | 1 | 58 | 119 | 24 | 87 | 1.82e-14 | 77.8 |
| MS.gene06054.t1 | MTR_8g099290 | 47.969 | 640 | 207 | 12 | 132 | 687 | 60 | 657 | 2.68e-143 | 433 |
| MS.gene06054.t1 | MTR_8g099265 | 29.444 | 360 | 204 | 5 | 336 | 683 | 476 | 797 | 1.76e-29 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06054.t1 | AT5G41790 | 30.867 | 392 | 206 | 8 | 310 | 689 | 1244 | 1582 | 2.09e-32 | 135 |
| MS.gene06054.t1 | AT5G41790 | 30.867 | 392 | 206 | 8 | 310 | 689 | 1244 | 1582 | 2.09e-32 | 135 |
| MS.gene06054.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 5.67e-12 | 69.3 |
| MS.gene06054.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 5.67e-12 | 69.3 |
| MS.gene06054.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 5.67e-12 | 69.3 |
| MS.gene06054.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 5.67e-12 | 69.3 |
Find 126 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTGTGCATAAAGAAAT+TGG | 0.208825 | 4.1:+4782664 | None:intergenic |
| ACCACTTGCTGAATTTATTA+AGG | 0.209893 | 4.1:-4782703 | MS.gene06054:CDS |
| GAAGGAACCACTTGCTAAAT+TGG | 0.223145 | 4.1:-4783155 | MS.gene06054:CDS |
| GTTCTTTGTCACGGATATTT+TGG | 0.227889 | 4.1:+4781890 | None:intergenic |
| GATAGCAGGTGAGTTGTTTA+TGG | 0.227997 | 4.1:+4783122 | None:intergenic |
| AGATCAGAAGGTTGCTGATT+TGG | 0.238878 | 4.1:-4782019 | MS.gene06054:CDS |
| TGGAGGAGCTGCAGGGTAAA+AGG | 0.272472 | 4.1:-4781540 | MS.gene06054:CDS |
| AGAACAATTGCTAAGTGAAA+TGG | 0.332179 | 4.1:-4781872 | MS.gene06054:CDS |
| CTCGACATTCTCAACCAAAA+AGG | 0.335300 | 4.1:+4781942 | None:intergenic |
| CCATTTCAAGTTCTGAAACT+TGG | 0.340446 | 4.1:+4783059 | None:intergenic |
| TGAAGAGCTAGAGAAGTTGA+TGG | 0.348600 | 4.1:-4781404 | MS.gene06054:CDS |
| GGGAGAGAAAATAGATCATT+TGG | 0.349193 | 4.1:-4782358 | MS.gene06054:CDS |
| TATCTGTTATCAATCTTATC+AGG | 0.349896 | 4.1:-4783012 | MS.gene06054:CDS |
| TGATAAAGAAAAGCAGCTTC+AGG | 0.360145 | 4.1:-4783672 | MS.gene06054:CDS |
| GTTGAGAATGTCGAGAATCT+TGG | 0.368175 | 4.1:-4781934 | MS.gene06054:CDS |
| TTGAGAATGTCGAGAATCTT+GGG | 0.369897 | 4.1:-4781933 | MS.gene06054:CDS |
| TCCCTCTTCAAAACTTCTGC+CGG | 0.370296 | 4.1:+4782726 | None:intergenic |
| CCAAGTTTCAGAACTTGAAA+TGG | 0.380164 | 4.1:-4783059 | MS.gene06054:CDS |
| AAATTGGAGACAAAGTAAAA+AGG | 0.384142 | 4.1:-4783530 | MS.gene06054:CDS |
| AGAGGAGGGTATGTTGAACT+TGG | 0.386544 | 4.1:-4781374 | MS.gene06054:CDS |
| CCATTTGTTGGAGGAGCTGC+AGG | 0.387223 | 4.1:-4781548 | MS.gene06054:CDS |
| TGGTTCAACAGTGTGATATC+TGG | 0.388765 | 4.1:-4781715 | MS.gene06054:CDS |
| CCAGAAAGCAAAAGAAGAAA+TGG | 0.390780 | 4.1:-4782295 | MS.gene06054:CDS |
| CCGGGGTGCCATCCTCATTA+AGG | 0.392615 | 4.1:+4782745 | None:intergenic |
| ATCAGAGAGCACTTCAAATC+AGG | 0.394359 | 4.1:-4781810 | MS.gene06054:CDS |
| AAATTGAAGACAAAGTAAAA+AGG | 0.397832 | 4.1:-4782794 | MS.gene06054:CDS |
| GAAGAGTTTCGTCAAGGCAT+TGG | 0.413187 | 4.1:-4782048 | MS.gene06054:CDS |
| AGGAAAAGAGGGAGGCCATC+AGG | 0.414307 | 4.1:-4781348 | MS.gene06054:CDS |
| TAGGAATGAGATAAGTAAAC+TGG | 0.415967 | 4.1:-4782400 | MS.gene06054:CDS |
| AGAGAGGAAGATGGAAATAA+TGG | 0.417316 | 4.1:-4782073 | MS.gene06054:CDS |
| CCCTCTTCAAAACTTCTGCC+GGG | 0.420248 | 4.1:+4782727 | None:intergenic |
| AAACATCTCACATGAGCTTC+AGG | 0.428923 | 4.1:-4781632 | MS.gene06054:CDS |
| GAACAATTGCTAAGTGAAAT+GGG | 0.430358 | 4.1:-4781871 | MS.gene06054:CDS |
| CATCTTGAGGGAGCTAAAAC+AGG | 0.431653 | 4.1:-4783414 | MS.gene06054:intron |
| AAAAGCAAATAAATGATCAT+AGG | 0.431804 | 4.1:-4782419 | MS.gene06054:CDS |
| AAGAGTTTCGTCAAGGCATT+GGG | 0.436849 | 4.1:-4782047 | MS.gene06054:CDS |
| CAGCTTCAGGGAGCTAAAAC+AGG | 0.439095 | 4.1:-4783659 | MS.gene06054:intron |
| GCTAGAGGCAAAGGCAAGAA+AGG | 0.439791 | 4.1:-4781482 | MS.gene06054:CDS |
| GATGGGTTCACACTGCTCTC+TGG | 0.439915 | 4.1:+4781248 | None:intergenic |
| TTGTACCTTCTTTAGCTCCC+TGG | 0.440010 | 4.1:+4782945 | None:intergenic |
| CACAATATGAAGAGCAAGCA+GGG | 0.440060 | 4.1:-4782650 | MS.gene06054:CDS |
| TATGTTGCTGAATTATCTCC+AGG | 0.440631 | 4.1:+4782496 | None:intergenic |
| GATGACAAACTTGGCGAAGA+TGG | 0.444149 | 4.1:-4783489 | MS.gene06054:CDS |
| GAAGTTGATGGAAGAGAAAG+AGG | 0.449076 | 4.1:-4781392 | MS.gene06054:CDS |
| AAATTCACGCATACATGATA+AGG | 0.453812 | 4.1:+4782530 | None:intergenic |
| GGCACAGGAGAATTTGTTGA+TGG | 0.454836 | 4.1:-4782379 | MS.gene06054:CDS |
| CTTATTAAAGATGACAAACT+TGG | 0.459122 | 4.1:-4783498 | MS.gene06054:CDS |
| TTCACACTGCTCTCTGGCCC+CGG | 0.474554 | 4.1:+4781254 | None:intergenic |
| TGCTATCATGATCATCTTGA+GGG | 0.474969 | 4.1:-4783426 | MS.gene06054:CDS |
| TGATAAAGAAAAGCAGCTCC+AGG | 0.475782 | 4.1:-4782963 | MS.gene06054:CDS |
| ACCACTTGCTAAATTGGTTG+AGG | 0.479278 | 4.1:-4783149 | MS.gene06054:CDS |
| CAATTCAGCTAGTTCTGCTC+TGG | 0.482325 | 4.1:+4783464 | None:intergenic |
| GTTTGCAGATTGATTATCAC+AGG | 0.484671 | 4.1:-4781318 | MS.gene06054:CDS |
| CATCTAGAGGGGCACAACTT+AGG | 0.484981 | 4.1:-4783091 | MS.gene06054:CDS |
| TGAACTTGGGAGAGGAAAAG+AGG | 0.486625 | 4.1:-4781360 | MS.gene06054:CDS |
| GAACTTGGGAGAGGAAAAGA+GGG | 0.487533 | 4.1:-4781359 | MS.gene06054:CDS |
| CCTGCAGCTCCTCCAACAAA+TGG | 0.491576 | 4.1:+4781548 | None:intergenic |
| GGAGGAGCTGCAGGGTAAAA+GGG | 0.492835 | 4.1:-4781539 | MS.gene06054:CDS |
| TGAAGTTGCAGAGAGGAAGA+TGG | 0.500394 | 4.1:-4782082 | MS.gene06054:CDS |
| GATAAAGAAAAGCAGCTTCA+GGG | 0.501153 | 4.1:-4783671 | MS.gene06054:CDS |
| CTAGAGGCAAAGGCAAGAAA+GGG | 0.502275 | 4.1:-4781481 | MS.gene06054:CDS |
| TCCTCAACCAATTTAGCAAG+TGG | 0.510155 | 4.1:+4783148 | None:intergenic |
| GCACAATATGAAGAGCAAGC+AGG | 0.517217 | 4.1:-4782651 | MS.gene06054:CDS |
| CAGCTCCAGGGAGCTAAAGA+AGG | 0.520930 | 4.1:-4782950 | MS.gene06054:intron |
| TAATGATCACTACCTTAATG+AGG | 0.530750 | 4.1:-4782757 | MS.gene06054:CDS |
| TTCATTGTCAACCACTGCGA+GGG | 0.532211 | 4.1:+4782233 | None:intergenic |
| ATTCATATCAAAGACTCGCC+GGG | 0.532708 | 4.1:-4781272 | MS.gene06054:CDS |
| TTAGCAATTGTTCTTTGTCA+CGG | 0.532960 | 4.1:+4781881 | None:intergenic |
| AAGGGAAGAGGAATTAACTC+TGG | 0.534555 | 4.1:-4781521 | MS.gene06054:CDS |
| TGAGATAAGTAAACTGGCAC+AGG | 0.534623 | 4.1:-4782394 | MS.gene06054:CDS |
| TGAATTTAATAAGTCCCTCC+TGG | 0.534643 | 4.1:-4782514 | MS.gene06054:CDS |
| TTGATGGAAGAGAAAGAGGA+GGG | 0.537216 | 4.1:-4781388 | MS.gene06054:CDS |
| CCTTCTTCAAAAGTTCTGCT+CGG | 0.538720 | 4.1:+4783173 | None:intergenic |
| GGAGTCCAAAGAAAGAGAAA+AGG | 0.538947 | 4.1:-4783038 | MS.gene06054:CDS |
| GGTTGAAAAGCTAGAGGCAA+AGG | 0.542679 | 4.1:-4781491 | MS.gene06054:CDS |
| TAGATGATCATGAAGATAGC+AGG | 0.544022 | 4.1:+4783108 | None:intergenic |
| TCCTTAATAAATTCAGCAAG+TGG | 0.545699 | 4.1:+4782702 | None:intergenic |
| GAGGAGGGTATGTTGAACTT+GGG | 0.547070 | 4.1:-4781373 | MS.gene06054:CDS |
| TCAATAAAATGAACAAGGAA+AGG | 0.549546 | 4.1:-4781594 | MS.gene06054:CDS |
| AATTCATATCAAAGACTCGC+CGG | 0.556514 | 4.1:-4781273 | MS.gene06054:CDS |
| GTTGATGGAAGAGAAAGAGG+AGG | 0.560634 | 4.1:-4781389 | MS.gene06054:CDS |
| GGGTATGTTGAACTTGGGAG+AGG | 0.563137 | 4.1:-4781368 | MS.gene06054:CDS |
| CTGCTATCATGATCATCTTG+AGG | 0.563301 | 4.1:-4783427 | MS.gene06054:CDS |
| AGGGAAGAGGAATTAACTCT+GGG | 0.570351 | 4.1:-4781520 | MS.gene06054:CDS |
| CCTCTTCAAAACTTCTGCCG+GGG | 0.580729 | 4.1:+4782728 | None:intergenic |
| AATGGGAGAGAGCTTTAGAA+AGG | 0.581902 | 4.1:-4781854 | MS.gene06054:CDS |
| CTGCAAACAAAGCTGCCTGA+TGG | 0.585782 | 4.1:+4781333 | None:intergenic |
| GGAGCGCAATGACTATCTAA+AGG | 0.585903 | 4.1:-4781296 | MS.gene06054:CDS |
| GCTGCAGGGTAAAAGGGAAG+AGG | 0.586054 | 4.1:-4781533 | MS.gene06054:CDS |
| ATGAAAAGCTTCATTGTCAG+CGG | 0.588252 | 4.1:+4781762 | None:intergenic |
| TATCTTCATGATCATCTAGA+GGG | 0.588339 | 4.1:-4783103 | MS.gene06054:CDS |
| CATTGGGTCAAAAGATCAGA+AGG | 0.590474 | 4.1:-4782031 | MS.gene06054:CDS |
| GCACAGGAGAATTTGTTGAT+GGG | 0.590821 | 4.1:-4782378 | MS.gene06054:CDS |
| TGCTACTGCAGAAGCAACAA+TGG | 0.597727 | 4.1:-4781785 | MS.gene06054:CDS |
| TATGACAAACTTGACGAGGA+TGG | 0.601073 | 4.1:-4783199 | MS.gene06054:CDS |
| CTATCTTCATGATCATCTAG+AGG | 0.607415 | 4.1:-4783104 | MS.gene06054:CDS |
| ATAAAATGAACAAGGAAAGG+AGG | 0.612530 | 4.1:-4781591 | MS.gene06054:CDS |
| TTTCATTGTCAACCACTGCG+AGG | 0.613283 | 4.1:+4782232 | None:intergenic |
| TCCTACAGAAATTTATGACA+AGG | 0.617898 | 4.1:-4783248 | MS.gene06054:intron |
| GATCACTACCTTAATGAGGA+TGG | 0.627075 | 4.1:-4782753 | MS.gene06054:CDS |
| CCTTAATGAGGATGGCACCC+CGG | 0.628053 | 4.1:-4782745 | MS.gene06054:CDS |
| TTGCTGAATTATCTCCAGGA+GGG | 0.629209 | 4.1:+4782500 | None:intergenic |
| AGTTCTGAAACTTGGTTCCG+CGG | 0.631255 | 4.1:+4783067 | None:intergenic |
| TAGAGGCAAAGGCAAGAAAG+GGG | 0.635133 | 4.1:-4781480 | MS.gene06054:CDS |
| GATAAAGAAAAGCAGCTCCA+GGG | 0.645057 | 4.1:-4782962 | MS.gene06054:CDS |
| TTTGCAGATTGATTATCACA+GGG | 0.655274 | 4.1:-4781317 | MS.gene06054:CDS |
| TGAGAATGTCGAGAATCTTG+GGG | 0.660209 | 4.1:-4781932 | MS.gene06054:CDS |
| AGAGGCAAAGGCAAGAAAGG+GGG | 0.662607 | 4.1:-4781479 | MS.gene06054:CDS |
| CTATCACAAGTACTAAAGAG+TGG | 0.663853 | 4.1:-4781735 | MS.gene06054:CDS |
| CATGTGAGATGTTTGAGATG+CGG | 0.669216 | 4.1:+4781641 | None:intergenic |
| ATATATCAATAAAATGAACA+AGG | 0.669640 | 4.1:-4781599 | MS.gene06054:CDS |
| AGGGGCACAACTTAGGTCCG+CGG | 0.670503 | 4.1:-4783084 | MS.gene06054:CDS |
| GTTGCTGAATTATCTCCAGG+AGG | 0.672896 | 4.1:+4782499 | None:intergenic |
| TAAATATGACAAACTTGACG+AGG | 0.676853 | 4.1:-4783203 | MS.gene06054:CDS |
| TAAACAAGATTCAGTTCACG+TGG | 0.677408 | 4.1:-4782475 | MS.gene06054:CDS |
| ATGGCGGAAGAGTTTCGTCA+AGG | 0.679047 | 4.1:-4782054 | MS.gene06054:CDS |
| GGAAAAGGTTGAAAAGCTAG+AGG | 0.680606 | 4.1:-4781497 | MS.gene06054:CDS |
| TTCATATCAAAGACTCGCCG+GGG | 0.684979 | 4.1:-4781271 | MS.gene06054:CDS |
| ATCTTCATGATCATCTAGAG+GGG | 0.685380 | 4.1:-4783102 | MS.gene06054:CDS |
| CTTGGGAGAGGAAAAGAGGG+AGG | 0.688336 | 4.1:-4781356 | MS.gene06054:CDS |
| GAGGAAGATGGAAATAATGG+CGG | 0.690602 | 4.1:-4782070 | MS.gene06054:CDS |
| CATTTGTTGGAGGAGCTGCA+GGG | 0.693707 | 4.1:-4781547 | MS.gene06054:CDS |
| GGAAGAGGAATTAACTCTGG+GGG | 0.701523 | 4.1:-4781518 | MS.gene06054:CDS |
| TCAAACTTGAAGTTGCAGAG+AGG | 0.717424 | 4.1:-4782089 | MS.gene06054:CDS |
| ACAATATGAAGAGCAAGCAG+GGG | 0.722360 | 4.1:-4782649 | MS.gene06054:CDS |
| GGGAAGAGGAATTAACTCTG+GGG | 0.768423 | 4.1:-4781519 | MS.gene06054:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCAATAAAATGAACA+AGG | - | chr4.1:4783351-4783370 | MS.gene06054:intron | 15.0% |
| !!! | AGGAAAAGTATAAAAAAAAA+AGG | + | chr4.1:4781396-4781415 | None:intergenic | 15.0% |
| !! | AAAAGCAAATAAATGATCAT+AGG | - | chr4.1:4782531-4782550 | MS.gene06054:CDS | 20.0% |
| !! | AAATTGAAGACAAAGTAAAA+AGG | - | chr4.1:4782156-4782175 | MS.gene06054:CDS | 20.0% |
| !!! | TATACTTTTCCTATAGAAAT+TGG | - | chr4.1:4781404-4781423 | MS.gene06054:CDS | 20.0% |
| ! | AAATTGGAGACAAAGTAAAA+AGG | - | chr4.1:4781420-4781439 | MS.gene06054:CDS | 25.0% |
| ! | CATATTGTGCATAAAGAAAT+TGG | + | chr4.1:4782289-4782308 | None:intergenic | 25.0% |
| ! | CTTATTAAAGATGACAAACT+TGG | - | chr4.1:4781452-4781471 | MS.gene06054:CDS | 25.0% |
| ! | TATCTGTTATCAATCTTATC+AGG | - | chr4.1:4781938-4781957 | MS.gene06054:CDS | 25.0% |
| ! | TCAATAAAATGAACAAGGAA+AGG | - | chr4.1:4783356-4783375 | MS.gene06054:intron | 25.0% |
| ! | TGATTTATGTATATCAGCTT+TGG | - | chr4.1:4781643-4781662 | MS.gene06054:CDS | 25.0% |
| !! | AGAAAATAACATCACCTTTT+TGG | - | chr4.1:4782994-4783013 | MS.gene06054:CDS | 25.0% |
| !! | GATTTTTGTATATCACCTTA+TGG | - | chr4.1:4782091-4782110 | MS.gene06054:CDS | 25.0% |
| !!! | TGTTATTTTCTTTCTTTTCC+AGG | + | chr4.1:4782985-4783004 | None:intergenic | 25.0% |
| AAATTCACGCATACATGATA+AGG | + | chr4.1:4782423-4782442 | None:intergenic | 30.0% | |
| ACAGCAGAATTGTGATATAA+TGG | - | chr4.1:4781351-4781370 | MS.gene06054:CDS | 30.0% | |
| ACCTTGTCATAAATTTCTGT+AGG | + | chr4.1:4781706-4781725 | None:intergenic | 30.0% | |
| ACTTCTGAATTGTGATATGA+TGG | - | chr4.1:4782043-4782062 | MS.gene06054:CDS | 30.0% | |
| ACTTTGTCTCCAATTTCTAT+AGG | + | chr4.1:4781416-4781435 | None:intergenic | 30.0% | |
| AGAACAATTGCTAAGTGAAA+TGG | - | chr4.1:4783078-4783097 | MS.gene06054:CDS | 30.0% | |
| ATAAAATGAACAAGGAAAGG+AGG | - | chr4.1:4783359-4783378 | MS.gene06054:intron | 30.0% | |
| ATATCACAATTCAGAAGTCA+TGG | + | chr4.1:4782041-4782060 | None:intergenic | 30.0% | |
| GAACAATTGCTAAGTGAAAT+GGG | - | chr4.1:4783079-4783098 | MS.gene06054:CDS | 30.0% | |
| GACAGATAAAAACCATTTGT+TGG | - | chr4.1:4783390-4783409 | MS.gene06054:intron | 30.0% | |
| GAGACAAAGTAAAAAGGATT+TGG | - | chr4.1:4781426-4781445 | MS.gene06054:CDS | 30.0% | |
| GGATGATCAAACAAATGATT+TGG | - | chr4.1:4781664-4781683 | MS.gene06054:CDS | 30.0% | |
| TAAATATGACAAACTTGACG+AGG | - | chr4.1:4781747-4781766 | MS.gene06054:CDS | 30.0% | |
| TAATGATCACTACCTTAATG+AGG | - | chr4.1:4782193-4782212 | MS.gene06054:CDS | 30.0% | |
| TAGGAATGAGATAAGTAAAC+TGG | - | chr4.1:4782550-4782569 | MS.gene06054:CDS | 30.0% | |
| TATCTTCATGATCATCTAGA+GGG | - | chr4.1:4781847-4781866 | MS.gene06054:CDS | 30.0% | |
| TCCTACAGAAATTTATGACA+AGG | - | chr4.1:4781702-4781721 | MS.gene06054:CDS | 30.0% | |
| TCCTTAATAAATTCAGCAAG+TGG | + | chr4.1:4782251-4782270 | None:intergenic | 30.0% | |
| TGAATTAGCCAACAAAAACA+TGG | - | chr4.1:4782745-4782764 | MS.gene06054:CDS | 30.0% | |
| TTAGCAATTGTTCTTTGTCA+CGG | + | chr4.1:4783072-4783091 | None:intergenic | 30.0% | |
| TTTGCAGATTGATTATCACA+GGG | - | chr4.1:4783633-4783652 | MS.gene06054:intron | 30.0% | |
| ! | ACCACTTGCTGAATTTATTA+AGG | - | chr4.1:4782247-4782266 | MS.gene06054:CDS | 30.0% |
| ! | AGATAAAAACCATTTGTTGG+AGG | - | chr4.1:4783393-4783412 | MS.gene06054:intron | 30.0% |
| ! | TAGTTCCTTTTCTCTTTCTT+TGG | + | chr4.1:4781920-4781939 | None:intergenic | 30.0% |
| AATTCATATCAAAGACTCGC+CGG | - | chr4.1:4783677-4783696 | MS.gene06054:CDS | 35.0% | |
| AGAGAGGAAGATGGAAATAA+TGG | - | chr4.1:4782877-4782896 | MS.gene06054:intron | 35.0% | |
| ATATCACAATTCAGTGGTCA+TGG | + | chr4.1:4781594-4781613 | None:intergenic | 35.0% | |
| ATATCACAATTCTGCTGTCA+TGG | + | chr4.1:4781349-4781368 | None:intergenic | 35.0% | |
| ATCTTCATGATCATCTAGAG+GGG | - | chr4.1:4781848-4781867 | MS.gene06054:CDS | 35.0% | |
| ATGAAAAGCTTCATTGTCAG+CGG | + | chr4.1:4783191-4783210 | None:intergenic | 35.0% | |
| CCAAGTTTCAGAACTTGAAA+TGG | - | chr4.1:4781891-4781910 | MS.gene06054:CDS | 35.0% | |
| CCAGAAAGCAAAAGAAGAAA+TGG | - | chr4.1:4782655-4782674 | MS.gene06054:CDS | 35.0% | |
| CTATCACAAGTACTAAAGAG+TGG | - | chr4.1:4783215-4783234 | MS.gene06054:CDS | 35.0% | |
| CTATCTTCATGATCATCTAG+AGG | - | chr4.1:4781846-4781865 | MS.gene06054:CDS | 35.0% | |
| GATAAAGAAAAGCAGCTTCA+GGG | - | chr4.1:4781279-4781298 | MS.gene06054:CDS | 35.0% | |
| GGGAGAGAAAATAGATCATT+TGG | - | chr4.1:4782592-4782611 | MS.gene06054:CDS | 35.0% | |
| GGTGCATAGTGTAATTATGT+GGG | + | chr4.1:4781328-4781347 | None:intergenic | 35.0% | |
| GTTTGCAGATTGATTATCAC+AGG | - | chr4.1:4783632-4783651 | MS.gene06054:intron | 35.0% | |
| TAAACAAGATTCAGTTCACG+TGG | - | chr4.1:4782475-4782494 | MS.gene06054:CDS | 35.0% | |
| TAGATGATCATGAAGATAGC+AGG | + | chr4.1:4781845-4781864 | None:intergenic | 35.0% | |
| TATGTTGCTGAATTATCTCC+AGG | + | chr4.1:4782457-4782476 | None:intergenic | 35.0% | |
| TCTGTCATATCACAATTCAG+TGG | + | chr4.1:4781600-4781619 | None:intergenic | 35.0% | |
| TGAATTTAATAAGTCCCTCC+TGG | - | chr4.1:4782436-4782455 | MS.gene06054:CDS | 35.0% | |
| TGATAAAGAAAAGCAGCTTC+AGG | - | chr4.1:4781278-4781297 | MS.gene06054:CDS | 35.0% | |
| TGCTATCATGATCATCTTGA+GGG | - | chr4.1:4781524-4781543 | MS.gene06054:CDS | 35.0% | |
| TGGTGCATAGTGTAATTATG+TGG | + | chr4.1:4781329-4781348 | None:intergenic | 35.0% | |
| TTGAGAATGTCGAGAATCTT+GGG | - | chr4.1:4783017-4783036 | MS.gene06054:CDS | 35.0% | |
| ! | CCATTTCTTCTTTTGCTTTC+TGG | + | chr4.1:4782658-4782677 | None:intergenic | 35.0% |
| ! | GTTCTTTGTCACGGATATTT+TGG | + | chr4.1:4783063-4783082 | None:intergenic | 35.0% |
| ! | TCTTTTCCAGGTCTTTTTTC+AGG | + | chr4.1:4782973-4782992 | None:intergenic | 35.0% |
| ! | TTCTTCTTTTGCTTTCTGGA+GGG | + | chr4.1:4782654-4782673 | None:intergenic | 35.0% |
| ! | TTTCTTCTTTTGCTTTCTGG+AGG | + | chr4.1:4782655-4782674 | None:intergenic | 35.0% |
| !! | CCATTTCAAGTTCTGAAACT+TGG | + | chr4.1:4781894-4781913 | None:intergenic | 35.0% |
| !! | CTGAAGATCCATGTTTTTGT+TGG | + | chr4.1:4782756-4782775 | None:intergenic | 35.0% |
| !! | TGCGGTTCTCAATATTTTTG+TGG | + | chr4.1:4783294-4783313 | None:intergenic | 35.0% |
| !!! | CTTTTTTCAGGTCTTCAACT+TGG | + | chr4.1:4782961-4782980 | None:intergenic | 35.0% |
| !!! | TGAAGCTGCTTTTCTTTATC+AGG | + | chr4.1:4781279-4781298 | None:intergenic | 35.0% |
| AAACATCTCACATGAGCTTC+AGG | - | chr4.1:4783318-4783337 | MS.gene06054:intron | 40.0% | |
| AAGGGAAGAGGAATTAACTC+TGG | - | chr4.1:4783429-4783448 | MS.gene06054:CDS | 40.0% | |
| ACAATATGAAGAGCAAGCAG+GGG | - | chr4.1:4782301-4782320 | MS.gene06054:CDS | 40.0% | |
| AGGGAAGAGGAATTAACTCT+GGG | - | chr4.1:4783430-4783449 | MS.gene06054:CDS | 40.0% | |
| ATTCATATCAAAGACTCGCC+GGG | - | chr4.1:4783678-4783697 | MS.gene06054:CDS | 40.0% | |
| CACAATATGAAGAGCAAGCA+GGG | - | chr4.1:4782300-4782319 | MS.gene06054:CDS | 40.0% | |
| CATTGGGTCAAAAGATCAGA+AGG | - | chr4.1:4782919-4782938 | MS.gene06054:intron | 40.0% | |
| CATTTGTTCGAGCTACCATA+AGG | + | chr4.1:4782109-4782128 | None:intergenic | 40.0% | |
| CCTTCTTCAAAAGTTCTGCT+CGG | + | chr4.1:4781780-4781799 | None:intergenic | 40.0% | |
| CTCGACATTCTCAACCAAAA+AGG | + | chr4.1:4783011-4783030 | None:intergenic | 40.0% | |
| CTGCTATCATGATCATCTTG+AGG | - | chr4.1:4781523-4781542 | MS.gene06054:CDS | 40.0% | |
| GAGGAAGATGGAAATAATGG+CGG | - | chr4.1:4782880-4782899 | MS.gene06054:intron | 40.0% | |
| GATAAAGAAAAGCAGCTCCA+GGG | - | chr4.1:4781988-4782007 | MS.gene06054:CDS | 40.0% | |
| GATAGCAGGTGAGTTGTTTA+TGG | + | chr4.1:4781831-4781850 | None:intergenic | 40.0% | |
| GATCACTACCTTAATGAGGA+TGG | - | chr4.1:4782197-4782216 | MS.gene06054:CDS | 40.0% | |
| GGAAAAGGTTGAAAAGCTAG+AGG | - | chr4.1:4783453-4783472 | MS.gene06054:CDS | 40.0% | |
| GGAGTCCAAAGAAAGAGAAA+AGG | - | chr4.1:4781912-4781931 | MS.gene06054:CDS | 40.0% | |
| GGTAGCTCGAACAAATGATT+TGG | - | chr4.1:4782112-4782131 | MS.gene06054:CDS | 40.0% | |
| GGTGCAAAGTGTAATTGTGT+GGG | + | chr4.1:4781573-4781592 | None:intergenic | 40.0% | |
| GTTGAGAATGTCGAGAATCT+TGG | - | chr4.1:4783016-4783035 | MS.gene06054:CDS | 40.0% | |
| TATGACAAACTTGACGAGGA+TGG | - | chr4.1:4781751-4781770 | MS.gene06054:CDS | 40.0% | |
| TCAAACTTGAAGTTGCAGAG+AGG | - | chr4.1:4782861-4782880 | MS.gene06054:intron | 40.0% | |
| TCCTCAACCAATTTAGCAAG+TGG | + | chr4.1:4781805-4781824 | None:intergenic | 40.0% | |
| TGAAGACCTGAAAAAAGACC+TGG | - | chr4.1:4782964-4782983 | MS.gene06054:CDS | 40.0% | |
| TGAAGAGCTAGAGAAGTTGA+TGG | - | chr4.1:4783546-4783565 | MS.gene06054:intron | 40.0% | |
| TGAGAATGTCGAGAATCTTG+GGG | - | chr4.1:4783018-4783037 | MS.gene06054:CDS | 40.0% | |
| TGAGATAAGTAAACTGGCAC+AGG | - | chr4.1:4782556-4782575 | MS.gene06054:CDS | 40.0% | |
| TGATAAAGAAAAGCAGCTCC+AGG | - | chr4.1:4781987-4782006 | MS.gene06054:CDS | 40.0% | |
| TGGTGCAAAGTGTAATTGTG+TGG | + | chr4.1:4781574-4781593 | None:intergenic | 40.0% | |
| TGGTTCAACAGTGTGATATC+TGG | - | chr4.1:4783235-4783254 | MS.gene06054:CDS | 40.0% | |
| TTGATGGAAGAGAAAGAGGA+GGG | - | chr4.1:4783562-4783581 | MS.gene06054:intron | 40.0% | |
| TTGCTGAATTATCTCCAGGA+GGG | + | chr4.1:4782453-4782472 | None:intergenic | 40.0% | |
| ! | AAGAGTTTCGTCAAGGCATT+GGG | - | chr4.1:4782903-4782922 | MS.gene06054:intron | 40.0% |
| ! | ACCACTTGCTAAATTGGTTG+AGG | - | chr4.1:4781801-4781820 | MS.gene06054:CDS | 40.0% |
| ! | AGATCAGAAGGTTGCTGATT+TGG | - | chr4.1:4782931-4782950 | MS.gene06054:intron | 40.0% |
| ! | CATGTGAGATGTTTGAGATG+CGG | + | chr4.1:4783312-4783331 | None:intergenic | 40.0% |
| ! | GAAGGAACCACTTGCTAAAT+TGG | - | chr4.1:4781795-4781814 | MS.gene06054:CDS | 40.0% |
| !! | AATGGGAGAGAGCTTTAGAA+AGG | - | chr4.1:4783096-4783115 | MS.gene06054:CDS | 40.0% |
| !! | ATCAGAGAGCACTTCAAATC+AGG | - | chr4.1:4783140-4783159 | MS.gene06054:CDS | 40.0% |
| !! | GAAGTTGATGGAAGAGAAAG+AGG | - | chr4.1:4783558-4783577 | MS.gene06054:intron | 40.0% |
| !! | GCACAGGAGAATTTGTTGAT+GGG | - | chr4.1:4782572-4782591 | MS.gene06054:CDS | 40.0% |
| CATCTTGAGGGAGCTAAAAC+AGG | - | chr4.1:4781536-4781555 | MS.gene06054:CDS | 45.0% | |
| CTAGAGGCAAAGGCAAGAAA+GGG | - | chr4.1:4783469-4783488 | MS.gene06054:CDS | 45.0% | |
| GAACTTGGGAGAGGAAAAGA+GGG | - | chr4.1:4783591-4783610 | MS.gene06054:intron | 45.0% | |
| GAAGAGTTTCGTCAAGGCAT+TGG | - | chr4.1:4782902-4782921 | MS.gene06054:intron | 45.0% | |
| GATGACAAACTTGGCGAAGA+TGG | - | chr4.1:4781461-4781480 | MS.gene06054:CDS | 45.0% | |
| GCACAATATGAAGAGCAAGC+AGG | - | chr4.1:4782299-4782318 | MS.gene06054:CDS | 45.0% | |
| GGAAGAGGAATTAACTCTGG+GGG | - | chr4.1:4783432-4783451 | MS.gene06054:CDS | 45.0% | |
| GGAGCGCAATGACTATCTAA+AGG | - | chr4.1:4783654-4783673 | MS.gene06054:intron | 45.0% | |
| GGGAAGAGGAATTAACTCTG+GGG | - | chr4.1:4783431-4783450 | MS.gene06054:CDS | 45.0% | |
| GGTTGAAAAGCTAGAGGCAA+AGG | - | chr4.1:4783459-4783478 | MS.gene06054:CDS | 45.0% | |
| GTTGCTGAATTATCTCCAGG+AGG | + | chr4.1:4782454-4782473 | None:intergenic | 45.0% | |
| TAGAGGCAAAGGCAAGAAAG+GGG | - | chr4.1:4783470-4783489 | MS.gene06054:CDS | 45.0% | |
| TCCCTCTTCAAAACTTCTGC+CGG | + | chr4.1:4782227-4782246 | None:intergenic | 45.0% | |
| TGAACTTGGGAGAGGAAAAG+AGG | - | chr4.1:4783590-4783609 | MS.gene06054:intron | 45.0% | |
| TGAAGTTGCAGAGAGGAAGA+TGG | - | chr4.1:4782868-4782887 | MS.gene06054:intron | 45.0% | |
| TGCTACTGCAGAAGCAACAA+TGG | - | chr4.1:4783165-4783184 | MS.gene06054:CDS | 45.0% | |
| TTCATATCAAAGACTCGCCG+GGG | - | chr4.1:4783679-4783698 | MS.gene06054:CDS | 45.0% | |
| TTCATTGTCAACCACTGCGA+GGG | + | chr4.1:4782720-4782739 | None:intergenic | 45.0% | |
| TTTCATTGTCAACCACTGCG+AGG | + | chr4.1:4782721-4782740 | None:intergenic | 45.0% | |
| ! | AGAGGAGGGTATGTTGAACT+TGG | - | chr4.1:4783576-4783595 | MS.gene06054:intron | 45.0% |
| ! | GAGGAGGGTATGTTGAACTT+GGG | - | chr4.1:4783577-4783596 | MS.gene06054:intron | 45.0% |
| ! | GGAATTAACTCTGGGGGAAA+AGG | - | chr4.1:4783438-4783457 | MS.gene06054:CDS | 45.0% |
| ! | GTTGATGGAAGAGAAAGAGG+AGG | - | chr4.1:4783561-4783580 | MS.gene06054:intron | 45.0% |
| ! | TTGTACCTTCTTTAGCTCCC+TGG | + | chr4.1:4782008-4782027 | None:intergenic | 45.0% |
| !! | AGTTCTGAAACTTGGTTCCG+CGG | + | chr4.1:4781886-4781905 | None:intergenic | 45.0% |
| !! | CAATTCAGCTAGTTCTGCTC+TGG | + | chr4.1:4781489-4781508 | None:intergenic | 45.0% |
| !! | CCGAGCAGAACTTTTGAAGA+AGG | - | chr4.1:4781777-4781796 | MS.gene06054:CDS | 45.0% |
| !! | GGCACAGGAGAATTTGTTGA+TGG | - | chr4.1:4782571-4782590 | MS.gene06054:CDS | 45.0% |
| ACATGCAAAAACCCTCGCAG+TGG | - | chr4.1:4782706-4782725 | MS.gene06054:CDS | 50.0% | |
| AGAGGCAAAGGCAAGAAAGG+GGG | - | chr4.1:4783471-4783490 | MS.gene06054:CDS | 50.0% | |
| CAGCTTCAGGGAGCTAAAAC+AGG | - | chr4.1:4781291-4781310 | MS.gene06054:CDS | 50.0% | |
| CCCTCTTCAAAACTTCTGCC+GGG | + | chr4.1:4782226-4782245 | None:intergenic | 50.0% | |
| CCTCTTCAAAACTTCTGCCG+GGG | + | chr4.1:4782225-4782244 | None:intergenic | 50.0% | |
| CTGCAAACAAAGCTGCCTGA+TGG | + | chr4.1:4783620-4783639 | None:intergenic | 50.0% | |
| GCTAGAGGCAAAGGCAAGAA+AGG | - | chr4.1:4783468-4783487 | MS.gene06054:CDS | 50.0% | |
| GGGTATGTTGAACTTGGGAG+AGG | - | chr4.1:4783582-4783601 | MS.gene06054:intron | 50.0% | |
| ! | ATGGCGGAAGAGTTTCGTCA+AGG | - | chr4.1:4782896-4782915 | MS.gene06054:intron | 50.0% |
| ! | CATCTAGAGGGGCACAACTT+AGG | - | chr4.1:4781859-4781878 | MS.gene06054:CDS | 50.0% |
| ! | CATTTGTTGGAGGAGCTGCA+GGG | - | chr4.1:4783403-4783422 | MS.gene06054:intron | 50.0% |
| !!! | CCCGGCAGAAGTTTTGAAGA+GGG | - | chr4.1:4782223-4782242 | MS.gene06054:CDS | 50.0% |
| AGGAAAAGAGGGAGGCCATC+AGG | - | chr4.1:4783602-4783621 | MS.gene06054:intron | 55.0% | |
| CAGCTCCAGGGAGCTAAAGA+AGG | - | chr4.1:4782000-4782019 | MS.gene06054:CDS | 55.0% | |
| CCTGCAGCTCCTCCAACAAA+TGG | + | chr4.1:4783405-4783424 | None:intergenic | 55.0% | |
| CCTTAATGAGGATGGCACCC+CGG | - | chr4.1:4782205-4782224 | MS.gene06054:CDS | 55.0% | |
| CTTGGGAGAGGAAAAGAGGG+AGG | - | chr4.1:4783594-4783613 | MS.gene06054:intron | 55.0% | |
| GCTGCAGGGTAAAAGGGAAG+AGG | - | chr4.1:4783417-4783436 | MS.gene06054:CDS | 55.0% | |
| GGAGGAGCTGCAGGGTAAAA+GGG | - | chr4.1:4783411-4783430 | MS.gene06054:intron | 55.0% | |
| TGGAGGAGCTGCAGGGTAAA+AGG | - | chr4.1:4783410-4783429 | MS.gene06054:intron | 55.0% | |
| ! | CCATTTGTTGGAGGAGCTGC+AGG | - | chr4.1:4783402-4783421 | MS.gene06054:intron | 55.0% |
| !!! | CCCCGGCAGAAGTTTTGAAG+AGG | - | chr4.1:4782222-4782241 | MS.gene06054:CDS | 55.0% |
| ! | AGGGGCACAACTTAGGTCCG+CGG | - | chr4.1:4781866-4781885 | MS.gene06054:CDS | 60.0% |
| ! | CCGGGGTGCCATCCTCATTA+AGG | + | chr4.1:4782208-4782227 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 4781255 | 4783717 | 4781255 | ID=MS.gene06054 |
| chr4.1 | mRNA | 4781255 | 4783717 | 4781255 | ID=MS.gene06054.t1;Parent=MS.gene06054 |
| chr4.1 | exon | 4783660 | 4783717 | 4783660 | ID=MS.gene06054.t1.exon1;Parent=MS.gene06054.t1 |
| chr4.1 | CDS | 4783660 | 4783717 | 4783660 | ID=cds.MS.gene06054.t1;Parent=MS.gene06054.t1 |
| chr4.1 | exon | 4783415 | 4783552 | 4783415 | ID=MS.gene06054.t1.exon2;Parent=MS.gene06054.t1 |
| chr4.1 | CDS | 4783415 | 4783552 | 4783415 | ID=cds.MS.gene06054.t1;Parent=MS.gene06054.t1 |
| chr4.1 | exon | 4782951 | 4783262 | 4782951 | ID=MS.gene06054.t1.exon3;Parent=MS.gene06054.t1 |
| chr4.1 | CDS | 4782951 | 4783262 | 4782951 | ID=cds.MS.gene06054.t1;Parent=MS.gene06054.t1 |
| chr4.1 | exon | 4781255 | 4782816 | 4781255 | ID=MS.gene06054.t1.exon4;Parent=MS.gene06054.t1 |
| chr4.1 | CDS | 4781255 | 4782816 | 4781255 | ID=cds.MS.gene06054.t1;Parent=MS.gene06054.t1 |
| Gene Sequence |
| Protein sequence |
