Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06055.t1 | XP_013447170.2 | 88.7 | 734 | 83 | 0 | 1 | 734 | 1 | 734 | 6.30E-282 | 979.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06055.t1 | F4JZY1 | 65.1 | 43 | 13 | 1 | 692 | 732 | 1538 | 1580 | 1.0e-06 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06055.t1 | A0A072TUT3 | 88.2 | 659 | 78 | 0 | 76 | 734 | 1 | 659 | 2.5e-240 | 841.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06055 | MS.gene056067 | PPI |
| MS.gene06055 | MS.gene018136 | PPI |
| MS.gene06055 | MS.gene44072 | PPI |
| MS.gene06055 | MS.gene036192 | PPI |
| MS.gene06055 | MS.gene97766 | PPI |
| MS.gene06055 | MS.gene96757 | PPI |
| MS.gene06055 | MS.gene50540 | PPI |
| MS.gene06055 | MS.gene43392 | PPI |
| MS.gene06055 | MS.gene92243 | PPI |
| MS.gene06055 | MS.gene005262 | PPI |
| MS.gene06055 | MS.gene49380 | PPI |
| MS.gene06055 | MS.gene90400 | PPI |
| MS.gene06055 | MS.gene40883 | PPI |
| MS.gene06055 | MS.gene047578 | PPI |
| MS.gene06055 | MS.gene002442 | PPI |
| MS.gene54368 | MS.gene06055 | PPI |
| MS.gene06055 | MS.gene054884 | PPI |
| MS.gene06055 | MS.gene91179 | PPI |
| MS.gene06055 | MS.gene071322 | PPI |
| MS.gene06055 | MS.gene056066 | PPI |
| MS.gene06055 | MS.gene39948 | PPI |
| MS.gene06055 | MS.gene44133 | PPI |
| MS.gene06055 | MS.gene01091 | PPI |
| MS.gene06055 | MS.gene91529 | PPI |
| MS.gene06055 | MS.gene020278 | PPI |
| MS.gene06055 | MS.gene01425 | PPI |
| MS.gene06055 | MS.gene60920 | PPI |
| MS.gene06055 | MS.gene065848 | PPI |
| MS.gene06055 | MS.gene005205 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06055.t1 | MTR_8g099290 | 92.109 | 659 | 52 | 0 | 76 | 734 | 1 | 659 | 0.0 | 1172 |
| MS.gene06055.t1 | MTR_8g099275 | 66.097 | 702 | 159 | 7 | 78 | 734 | 556 | 1223 | 0.0 | 803 |
| MS.gene06055.t1 | MTR_8g099275 | 42.347 | 392 | 167 | 9 | 50 | 388 | 397 | 782 | 1.16e-54 | 204 |
| MS.gene06055.t1 | MTR_8g099275 | 62.857 | 70 | 13 | 2 | 6 | 62 | 18 | 87 | 2.58e-15 | 80.9 |
| MS.gene06055.t1 | MTR_8g099280 | 53.721 | 430 | 123 | 6 | 330 | 734 | 168 | 546 | 6.50e-119 | 368 |
| MS.gene06055.t1 | MTR_8g099280 | 73.611 | 72 | 16 | 1 | 1 | 72 | 1 | 69 | 2.31e-25 | 111 |
| MS.gene06055.t1 | MTR_8g099265 | 24.970 | 829 | 477 | 26 | 2 | 728 | 12 | 797 | 1.07e-28 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06055.t1 | AT5G41790 | 28.523 | 596 | 329 | 12 | 188 | 732 | 1031 | 1580 | 3.07e-38 | 154 |
| MS.gene06055.t1 | AT5G41790 | 35.533 | 197 | 100 | 2 | 58 | 234 | 1064 | 1253 | 3.64e-16 | 84.0 |
| MS.gene06055.t1 | AT5G41790 | 28.523 | 596 | 329 | 12 | 188 | 732 | 1031 | 1580 | 3.07e-38 | 154 |
| MS.gene06055.t1 | AT5G41790 | 35.533 | 197 | 100 | 2 | 58 | 234 | 1064 | 1253 | 3.64e-16 | 84.0 |
| MS.gene06055.t1 | AT1G64330 | 31.527 | 203 | 122 | 4 | 436 | 622 | 275 | 476 | 4.51e-13 | 72.8 |
| MS.gene06055.t1 | AT5G41780 | 35.119 | 168 | 92 | 5 | 562 | 724 | 375 | 530 | 9.24e-11 | 65.5 |
| MS.gene06055.t1 | AT5G41780 | 35.119 | 168 | 92 | 5 | 562 | 724 | 375 | 530 | 9.24e-11 | 65.5 |
| MS.gene06055.t1 | AT5G41780 | 35.119 | 168 | 92 | 5 | 562 | 724 | 375 | 530 | 9.24e-11 | 65.5 |
| MS.gene06055.t1 | AT5G41780 | 35.119 | 168 | 92 | 5 | 562 | 724 | 375 | 530 | 9.24e-11 | 65.5 |
Find 123 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTCAAGTTCTGAAATT+TGG | 0.197686 | 4.1:+4777198 | None:intergenic |
| TAGTTCCTCTTCTCTTTCTT+TGG | 0.220995 | 4.1:+4777172 | None:intergenic |
| CCTCATCTCCTTTCTCTTCC+AGG | 0.239371 | 4.1:+4775881 | None:intergenic |
| AGATCAGATGGCAGCTGATT+TGG | 0.259482 | 4.1:-4775932 | MS.gene06055:CDS |
| GAACTTCCAAGTCAGATTTC+TGG | 0.263958 | 4.1:+4776982 | None:intergenic |
| GGAGGAGTTGCAGGGTAAAA+AGG | 0.265667 | 4.1:-4775506 | MS.gene06055:CDS |
| AGTGTTCAACTCACAGTCTT+TGG | 0.290321 | 4.1:+4776455 | None:intergenic |
| TTTCCAAGATAAGCTTAATA+AGG | 0.290572 | 4.1:-4776655 | MS.gene06055:CDS |
| CCATTTGTTGGAGGAGTTGC+AGG | 0.293583 | 4.1:-4775515 | MS.gene06055:CDS |
| GTTCTTCAGCTACACTCTTC+TGG | 0.293768 | 4.1:+4776487 | None:intergenic |
| CACCTCATTTGTATTGCTTT+CGG | 0.295061 | 4.1:+4777040 | None:intergenic |
| CTGCCTTATTAAGCTTATCT+TGG | 0.303487 | 4.1:+4776652 | None:intergenic |
| ATTTGAGTTCTCTGCACTTC+AGG | 0.313512 | 4.1:-4776301 | MS.gene06055:CDS |
| AATCTTAATTTGCTCCTTGC+AGG | 0.324134 | 4.1:+4776602 | None:intergenic |
| GTCGATCGAAAAGCTGAAAT+TGG | 0.335030 | 4.1:-4776529 | MS.gene06055:CDS |
| AGGATCAACTCTGCAGAAAA+AGG | 0.348549 | 4.1:-4775479 | MS.gene06055:CDS |
| TTCTAAAGCTCTCTTCCTCT+TGG | 0.360119 | 4.1:+4775803 | None:intergenic |
| TGATAAAGAAAAGCAGCTTC+AGG | 0.360145 | 4.1:-4777486 | MS.gene06055:CDS |
| TAAGGCAGAGGAAGAATGTT+TGG | 0.360378 | 4.1:-4776637 | MS.gene06055:CDS |
| GTGGATAAGGAGTCTGGAAT+TGG | 0.394781 | 4.1:-4776835 | MS.gene06055:CDS |
| TGTGTCAACAGTATGATATC+TGG | 0.404527 | 4.1:-4775682 | MS.gene06055:CDS |
| AAAATTTAACGATGTGGATA+AGG | 0.413797 | 4.1:-4776848 | MS.gene06055:CDS |
| AGGAAAAGAGGGAGGCCATC+AGG | 0.414307 | 4.1:-4775315 | MS.gene06055:CDS |
| TCTCTTCCTCTTGGTTTGAC+AGG | 0.421163 | 4.1:+4775812 | None:intergenic |
| CCATCAGGCAGCTTTGTTTG+AGG | 0.432125 | 4.1:-4775300 | MS.gene06055:CDS |
| TGAAGACTCTTCCTCTGCCT+TGG | 0.433978 | 4.1:+4776269 | None:intergenic |
| GAAGTTGATAAAAGAGAAAG+AGG | 0.434583 | 4.1:-4775359 | MS.gene06055:CDS |
| CAGCTTCAGGGAGCTAAAAC+AGG | 0.439095 | 4.1:-4777473 | MS.gene06055:intron |
| CATGGAGCAAGAGAGACTTA+TGG | 0.443666 | 4.1:-4776880 | MS.gene06055:CDS |
| GATGACAAACTTGGCGAAGA+TGG | 0.444149 | 4.1:-4777305 | MS.gene06055:CDS |
| CATCTGCTATCATGATCATC+TGG | 0.444596 | 4.1:-4777246 | MS.gene06055:CDS |
| CAGCGAGATGAGTAGGGAAA+AGG | 0.447914 | 4.1:-4775560 | MS.gene06055:CDS |
| AGAGGAGGGTGTGTTGAACC+TGG | 0.450944 | 4.1:-4775341 | MS.gene06055:CDS |
| CCACTATTCTCCGAAGATCC+AGG | 0.451178 | 4.1:+4776079 | None:intergenic |
| GAATGTATTGCGGCAGGAAG+TGG | 0.451293 | 4.1:-4777018 | MS.gene06055:CDS |
| AACGATGTGGATAAGGAGTC+TGG | 0.451970 | 4.1:-4776841 | MS.gene06055:CDS |
| TTCAGAGAGCACTTGAAGAC+AGG | 0.456552 | 4.1:-4775756 | MS.gene06055:CDS |
| CATAAGTCTCTCTTGCTCCA+TGG | 0.457161 | 4.1:+4776881 | None:intergenic |
| CTTATTAAAGATGACAAACT+TGG | 0.459122 | 4.1:-4777314 | MS.gene06055:CDS |
| CCTGGATCTTCGGAGAATAG+TGG | 0.461420 | 4.1:-4776079 | MS.gene06055:CDS |
| AGCGAGATGAGTAGGGAAAA+GGG | 0.470726 | 4.1:-4775559 | MS.gene06055:CDS |
| GTTTGAGGATTGATTATCAC+AGG | 0.472341 | 4.1:-4775285 | MS.gene06055:CDS |
| CGAAGATGAAGAGCAAATAA+AGG | 0.476923 | 4.1:-4776784 | MS.gene06055:CDS |
| AAACATCTCATACGAGCTTC+AGG | 0.479335 | 4.1:-4775599 | MS.gene06055:CDS |
| AATATAAACACATCGATAGT+TGG | 0.483166 | 4.1:-4776041 | MS.gene06055:CDS |
| TTCATTGTCAACCATTGTGA+GGG | 0.483407 | 4.1:+4776125 | None:intergenic |
| CCTGCAACTCCTCCAACAAA+TGG | 0.483822 | 4.1:+4775515 | None:intergenic |
| ACATGCTCAGAAAATTGAAC+TGG | 0.489009 | 4.1:-4777105 | MS.gene06055:CDS |
| TCGGAGAATAGTGGAAGAAC+GGG | 0.492348 | 4.1:-4776070 | MS.gene06055:CDS |
| AAGGCAGAGGAAGAGTCTTC+AGG | 0.498801 | 4.1:-4776267 | MS.gene06055:CDS |
| AAAGGATTTAAGCTCCTCTC+TGG | 0.498918 | 4.1:+4775215 | None:intergenic |
| GATAAAGAAAAGCAGCTTCA+GGG | 0.501153 | 4.1:-4777485 | MS.gene06055:CDS |
| GCAGAAAACAAAAGAAGAGT+TGG | 0.503519 | 4.1:-4776187 | MS.gene06055:CDS |
| GGGGCACAATTTAGAGTTGA+GGG | 0.505090 | 4.1:-4777222 | MS.gene06055:CDS |
| CGAAAAGCTGAAATTGGAGA+TGG | 0.508498 | 4.1:-4776523 | MS.gene06055:CDS |
| CCAAGTTGACAATCTGCAAA+AGG | 0.516726 | 4.1:-4776223 | MS.gene06055:CDS |
| AAGGAGTCTGGAATTGGAGA+TGG | 0.517960 | 4.1:-4776829 | MS.gene06055:CDS |
| AATATCCGATGAGAGAGAAT+CGG | 0.520995 | 4.1:-4776688 | MS.gene06055:CDS |
| CGTATGAGATGTTTGAGTTG+CGG | 0.521270 | 4.1:+4775608 | None:intergenic |
| ATTGTCAACTTGGGCTGTGA+AGG | 0.523312 | 4.1:+4776233 | None:intergenic |
| TCATCTGACACAGCAGAAGT+TGG | 0.523679 | 4.1:-4776742 | MS.gene06055:CDS |
| AAAAGTGACCTGGAAGAGAA+AGG | 0.524373 | 4.1:-4775889 | MS.gene06055:CDS |
| GTGTCAACAGTATGATATCT+GGG | 0.528872 | 4.1:-4775681 | MS.gene06055:CDS |
| AAGTAATGAAGCTTCAACTC+AGG | 0.534118 | 4.1:-4777063 | MS.gene06055:CDS |
| TCAAATTCAAAGTCTGAAAG+AGG | 0.535899 | 4.1:-4776919 | MS.gene06055:CDS |
| GGATAAACTTTCCAAGGCAG+AGG | 0.537641 | 4.1:-4776280 | MS.gene06055:CDS |
| TGAGGTGAATGTATTGCGGC+AGG | 0.539029 | 4.1:-4777024 | MS.gene06055:CDS |
| AATCTGTCAGCGAGATGAGT+AGG | 0.540179 | 4.1:-4775567 | MS.gene06055:CDS |
| TTTCATTGTCAACCATTGTG+AGG | 0.542166 | 4.1:+4776124 | None:intergenic |
| GGTTGAAAAGCTAGAGGCAA+AGG | 0.542679 | 4.1:-4775458 | MS.gene06055:CDS |
| TTCGGAGAATAGTGGAAGAA+CGG | 0.547270 | 4.1:-4776071 | MS.gene06055:CDS |
| ATGACTAATCGCTTGGATGT+TGG | 0.548668 | 4.1:+4776761 | None:intergenic |
| GAAGTCCAAAGAAAGAGAAG+AGG | 0.554619 | 4.1:-4777177 | MS.gene06055:CDS |
| CATTGGTTCAAAAGATCAGA+TGG | 0.554870 | 4.1:-4775944 | MS.gene06055:CDS |
| TGAACCTGGGAGAGGAAAAG+AGG | 0.555646 | 4.1:-4775327 | MS.gene06055:CDS |
| TAAACTGACACAGGAGAAGT+TGG | 0.555933 | 4.1:-4776373 | MS.gene06055:CDS |
| TTGATAAAAGAGAAAGAGGA+GGG | 0.557130 | 4.1:-4775355 | MS.gene06055:CDS |
| GTTGATAAAAGAGAAAGAGG+AGG | 0.557587 | 4.1:-4775356 | MS.gene06055:CDS |
| TGAAGACCTGAAAAGTGACC+TGG | 0.565216 | 4.1:-4775899 | MS.gene06055:CDS |
| ACAACACCAGAAATCTGACT+TGG | 0.566725 | 4.1:-4776988 | MS.gene06055:CDS |
| GGGTGTGTTGAACCTGGGAG+AGG | 0.567444 | 4.1:-4775335 | MS.gene06055:CDS |
| GTGTCAGATGACTAATCGCT+TGG | 0.569201 | 4.1:+4776754 | None:intergenic |
| AAATTGAAGACAAAGTAAGA+AGG | 0.571110 | 4.1:-4777346 | MS.gene06055:CDS |
| AGAGGAAGAGAGCTTTAGAA+AGG | 0.575491 | 4.1:-4775800 | MS.gene06055:CDS |
| CTGCACGTTTAAGTTTGACC+TGG | 0.575917 | 4.1:+4776007 | None:intergenic |
| ATAAAGAAAATTTAACGATG+TGG | 0.577744 | 4.1:-4776854 | MS.gene06055:CDS |
| ATCTGTCAGCGAGATGAGTA+GGG | 0.578642 | 4.1:-4775566 | MS.gene06055:CDS |
| GGAGCGCAATGACTATCTAA+AGG | 0.579083 | 4.1:-4775263 | MS.gene06055:CDS |
| ACTTCAGGATAAACTTTCCA+AGG | 0.579657 | 4.1:-4776286 | MS.gene06055:CDS |
| AGATAAGCTTAATAAGGCAG+AGG | 0.580725 | 4.1:-4776649 | MS.gene06055:CDS |
| GAAGAGTTCCGTGAAGACAT+TGG | 0.581952 | 4.1:-4775961 | MS.gene06055:CDS |
| GCTAGAGGCAAAGGCAAGAG+AGG | 0.584233 | 4.1:-4775449 | MS.gene06055:CDS |
| GATAAGAGAAGAACATGCAC+AGG | 0.585517 | 4.1:-4776148 | MS.gene06055:CDS |
| TGCTATCATGATCATCTGGA+GGG | 0.586280 | 4.1:-4777242 | MS.gene06055:CDS |
| AGGAGTCTGGAATTGGAGAT+GGG | 0.588723 | 4.1:-4776828 | MS.gene06055:CDS |
| CCTCAAACAAAGCTGCCTGA+TGG | 0.589108 | 4.1:+4775300 | None:intergenic |
| TAGTTGGTACAATGACTGCC+AGG | 0.589912 | 4.1:-4776025 | MS.gene06055:CDS |
| TAACTCCGATTCTCTCTCAT+CGG | 0.589985 | 4.1:+4776683 | None:intergenic |
| GAACCTGGGAGAGGAAAAGA+GGG | 0.590509 | 4.1:-4775326 | MS.gene06055:CDS |
| AAATCATATCAAAGACTCGA+AGG | 0.595729 | 4.1:-4775240 | MS.gene06055:CDS |
| GCGAGATGAGTAGGGAAAAG+GGG | 0.597199 | 4.1:-4775558 | MS.gene06055:CDS |
| GACACAGGAGAAGTTGGAGC+TGG | 0.599447 | 4.1:-4776367 | MS.gene06055:CDS |
| GGTTGTAATATCTACCTGCA+AGG | 0.601672 | 4.1:-4776616 | MS.gene06055:CDS |
| CTGCTATCATGATCATCTGG+AGG | 0.603974 | 4.1:-4777243 | MS.gene06055:CDS |
| AATCATATCAAAGACTCGAA+GGG | 0.608354 | 4.1:-4775239 | MS.gene06055:CDS |
| GGCCGAAAGCAATACAAATG+AGG | 0.612496 | 4.1:-4777042 | MS.gene06055:CDS |
| AATTCAAAGTCTGAAAGAGG+AGG | 0.620184 | 4.1:-4776916 | MS.gene06055:CDS |
| AGGGGCACAATTTAGAGTTG+AGG | 0.623036 | 4.1:-4777223 | MS.gene06055:CDS |
| GAGGAGGGTGTGTTGAACCT+GGG | 0.623357 | 4.1:-4775340 | MS.gene06055:CDS |
| TGACTTGGAAGTTCAGCTTG+TGG | 0.632873 | 4.1:-4776973 | MS.gene06055:CDS |
| CATTTGTTGGAGGAGTTGCA+GGG | 0.634017 | 4.1:-4775514 | MS.gene06055:CDS |
| ATCATATCAAAGACTCGAAG+GGG | 0.636434 | 4.1:-4775238 | MS.gene06055:CDS |
| CAAATGAGGTGAATGTATTG+CGG | 0.639829 | 4.1:-4777028 | MS.gene06055:CDS |
| CCTGGAAGAGAAAGGAGATG+AGG | 0.642286 | 4.1:-4775881 | MS.gene06055:CDS |
| TTTGAGGATTGATTATCACA+GGG | 0.644334 | 4.1:-4775284 | MS.gene06055:CDS |
| AAGACTCGAAGGGGCCAGAG+AGG | 0.650634 | 4.1:-4775229 | MS.gene06055:CDS |
| GGAAGAGAGCTTTAGAAAGG+CGG | 0.655657 | 4.1:-4775797 | MS.gene06055:CDS |
| GCTATCATGATCATCTGGAG+GGG | 0.656885 | 4.1:-4777241 | MS.gene06055:CDS |
| GCTTTGCCTGTCAAACCAAG+AGG | 0.657188 | 4.1:-4775818 | MS.gene06055:CDS |
| ACATGCACAGGCCCTCACAA+TGG | 0.665629 | 4.1:-4776136 | MS.gene06055:CDS |
| TCACATCGCTAAACTGACAC+AGG | 0.671614 | 4.1:-4776382 | MS.gene06055:CDS |
| TGAGAATGTCATGAATCTTG+AGG | 0.677384 | 4.1:-4775845 | MS.gene06055:CDS |
| CCTGGGAGAGGAAAAGAGGG+AGG | 0.688336 | 4.1:-4775323 | MS.gene06055:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGAAAATTTAACGATG+TGG | - | chr4.1:4775877-4775896 | MS.gene06055:CDS | 20.0% |
| !! | TATAATGAGATGCAAAAATT+AGG | - | chr4.1:4776176-4776195 | MS.gene06055:CDS | 20.0% |
| !!! | TACTATAAGCTCTAAATTTT+CGG | - | chr4.1:4777078-4777097 | MS.gene06055:CDS | 20.0% |
| ! | AAAATTTAACGATGTGGATA+AGG | - | chr4.1:4775883-4775902 | MS.gene06055:CDS | 25.0% |
| ! | AAATTGAAGACAAAGTAAGA+AGG | - | chr4.1:4775385-4775404 | MS.gene06055:CDS | 25.0% |
| ! | AATATAAACACATCGATAGT+TGG | - | chr4.1:4776690-4776709 | MS.gene06055:CDS | 25.0% |
| ! | ACTTTGTCTTCAATTTCTAT+AGG | + | chr4.1:4775381-4775400 | None:intergenic | 25.0% |
| ! | CTTATTAAAGATGACAAACT+TGG | - | chr4.1:4775417-4775436 | MS.gene06055:CDS | 25.0% |
| ! | TTTCCAAGATAAGCTTAATA+AGG | - | chr4.1:4776076-4776095 | MS.gene06055:CDS | 25.0% |
| !! | TTTTTGCATCTCATTATACA+TGG | + | chr4.1:4776174-4776193 | None:intergenic | 25.0% |
| !!! | TCATTTCAAGTTCTGAAATT+TGG | + | chr4.1:4775536-4775555 | None:intergenic | 25.0% |
| AAATCATATCAAAGACTCGA+AGG | - | chr4.1:4777491-4777510 | MS.gene06055:CDS | 30.0% | |
| AATCATATCAAAGACTCGAA+GGG | - | chr4.1:4777492-4777511 | MS.gene06055:CDS | 30.0% | |
| ACAGCAGAATTGTGATATAA+TGG | - | chr4.1:4775318-4775337 | MS.gene06055:CDS | 30.0% | |
| GACAGATAAAAACCATTTGT+TGG | - | chr4.1:4777204-4777223 | MS.gene06055:CDS | 30.0% | |
| TCAAATTCAAAGTCTGAAAG+AGG | - | chr4.1:4775812-4775831 | MS.gene06055:CDS | 30.0% | |
| TTGATAAAAGAGAAAGAGGA+GGG | - | chr4.1:4777376-4777395 | MS.gene06055:intron | 30.0% | |
| TTTGAGGATTGATTATCACA+GGG | - | chr4.1:4777447-4777466 | MS.gene06055:intron | 30.0% | |
| ! | AGATAAAAACCATTTGTTGG+AGG | - | chr4.1:4777207-4777226 | MS.gene06055:CDS | 30.0% |
| !! | GAAGTTGATAAAAGAGAAAG+AGG | - | chr4.1:4777372-4777391 | MS.gene06055:intron | 30.0% |
| !!! | ACAATTCAGCTAGTTTTTCT+CGG | + | chr4.1:4775455-4775474 | None:intergenic | 30.0% |
| AAGTAATGAAGCTTCAACTC+AGG | - | chr4.1:4775668-4775687 | MS.gene06055:CDS | 35.0% | |
| AATATCCGATGAGAGAGAAT+CGG | - | chr4.1:4776043-4776062 | MS.gene06055:CDS | 35.0% | |
| AATTCAAAGTCTGAAAGAGG+AGG | - | chr4.1:4775815-4775834 | MS.gene06055:CDS | 35.0% | |
| ACATGCTCAGAAAATTGAAC+TGG | - | chr4.1:4775626-4775645 | MS.gene06055:CDS | 35.0% | |
| ACTTCAGGATAAACTTTCCA+AGG | - | chr4.1:4776445-4776464 | MS.gene06055:CDS | 35.0% | |
| AGATAAGCTTAATAAGGCAG+AGG | - | chr4.1:4776082-4776101 | MS.gene06055:CDS | 35.0% | |
| ATATCACAATTCTGCTGTCA+TGG | + | chr4.1:4775316-4775335 | None:intergenic | 35.0% | |
| ATCATATCAAAGACTCGAAG+GGG | - | chr4.1:4777493-4777512 | MS.gene06055:CDS | 35.0% | |
| CAAATGAGGTGAATGTATTG+CGG | - | chr4.1:4775703-4775722 | MS.gene06055:CDS | 35.0% | |
| CACCTCATTTGTATTGCTTT+CGG | + | chr4.1:4775694-4775713 | None:intergenic | 35.0% | |
| CGAAGATGAAGAGCAAATAA+AGG | - | chr4.1:4775947-4775966 | MS.gene06055:CDS | 35.0% | |
| GAAAAAGGTTGAAAAGCTAG+AGG | - | chr4.1:4777267-4777286 | MS.gene06055:CDS | 35.0% | |
| GATAAAGAAAAGCAGCTTCA+GGG | - | chr4.1:4775246-4775265 | MS.gene06055:CDS | 35.0% | |
| GCAGAAAACAAAAGAAGAGT+TGG | - | chr4.1:4776544-4776563 | MS.gene06055:CDS | 35.0% | |
| GTGTCAACAGTATGATATCT+GGG | - | chr4.1:4777050-4777069 | MS.gene06055:CDS | 35.0% | |
| GTTTGAGGATTGATTATCAC+AGG | - | chr4.1:4777446-4777465 | MS.gene06055:intron | 35.0% | |
| TAGTTCCTCTTCTCTTTCTT+TGG | + | chr4.1:4775562-4775581 | None:intergenic | 35.0% | |
| TGAATTAGCCAACAAAAACC+TGG | - | chr4.1:4776634-4776653 | MS.gene06055:CDS | 35.0% | |
| TGAGAATGTCATGAATCTTG+AGG | - | chr4.1:4776886-4776905 | MS.gene06055:CDS | 35.0% | |
| TGATAAAGAAAAGCAGCTTC+AGG | - | chr4.1:4775245-4775264 | MS.gene06055:CDS | 35.0% | |
| TGTGTCAACAGTATGATATC+TGG | - | chr4.1:4777049-4777068 | MS.gene06055:CDS | 35.0% | |
| TTCATTGTCAACCATTGTGA+GGG | + | chr4.1:4776609-4776628 | None:intergenic | 35.0% | |
| TTTCATTGTCAACCATTGTG+AGG | + | chr4.1:4776610-4776629 | None:intergenic | 35.0% | |
| ! | CTGCCTTATTAAGCTTATCT+TGG | + | chr4.1:4776082-4776101 | None:intergenic | 35.0% |
| ! | CTTTTGAACCAATGTCTTCA+CGG | + | chr4.1:4776781-4776800 | None:intergenic | 35.0% |
| ! | CTTTTGCAGATTGTCAACTT+GGG | + | chr4.1:4776510-4776529 | None:intergenic | 35.0% |
| ! | GTTGATAAAAGAGAAAGAGG+AGG | - | chr4.1:4777375-4777394 | MS.gene06055:intron | 35.0% |
| ! | TCGTACACTCAGAATTTTCT+CGG | + | chr4.1:4775791-4775810 | None:intergenic | 35.0% |
| !! | AATCTTAATTTGCTCCTTGC+AGG | + | chr4.1:4776132-4776151 | None:intergenic | 35.0% |
| !! | CATTGGTTCAAAAGATCAGA+TGG | - | chr4.1:4776787-4776806 | MS.gene06055:CDS | 35.0% |
| !!! | CAATTCAGCTAGTTTTTCTC+GGG | + | chr4.1:4775454-4775473 | None:intergenic | 35.0% |
| !!! | CTCTTCTTTTGTTTTCTGCA+AGG | + | chr4.1:4776543-4776562 | None:intergenic | 35.0% |
| !!! | TGAAGCTGCTTTTCTTTATC+AGG | + | chr4.1:4775246-4775265 | None:intergenic | 35.0% |
| AAAAGTGACCTGGAAGAGAA+AGG | - | chr4.1:4776842-4776861 | MS.gene06055:CDS | 40.0% | |
| AAACATCTCATACGAGCTTC+AGG | - | chr4.1:4777132-4777151 | MS.gene06055:CDS | 40.0% | |
| ACAACACCAGAAATCTGACT+TGG | - | chr4.1:4775743-4775762 | MS.gene06055:CDS | 40.0% | |
| AGGATCAACTCTGCAGAAAA+AGG | - | chr4.1:4777252-4777271 | MS.gene06055:CDS | 40.0% | |
| AGTGTTCAACTCACAGTCTT+TGG | + | chr4.1:4776279-4776298 | None:intergenic | 40.0% | |
| ATGACTAATCGCTTGGATGT+TGG | + | chr4.1:4775973-4775992 | None:intergenic | 40.0% | |
| CATCTGCTATCATGATCATC+TGG | - | chr4.1:4775485-4775504 | MS.gene06055:CDS | 40.0% | |
| CCAACAAAAACCTGGATCTT+CGG | - | chr4.1:4776642-4776661 | MS.gene06055:CDS | 40.0% | |
| CGAAAAGCTGAAATTGGAGA+TGG | - | chr4.1:4776208-4776227 | MS.gene06055:CDS | 40.0% | |
| GAACTTCCAAGTCAGATTTC+TGG | + | chr4.1:4775752-4775771 | None:intergenic | 40.0% | |
| GAAGTCCAAAGAAAGAGAAG+AGG | - | chr4.1:4775554-4775573 | MS.gene06055:CDS | 40.0% | |
| GATAAGAGAAGAACATGCAC+AGG | - | chr4.1:4776583-4776602 | MS.gene06055:CDS | 40.0% | |
| GGTTGTAATATCTACCTGCA+AGG | - | chr4.1:4776115-4776134 | MS.gene06055:CDS | 40.0% | |
| GTCGATCGAAAAGCTGAAAT+TGG | - | chr4.1:4776202-4776221 | MS.gene06055:CDS | 40.0% | |
| TAAACTGACACAGGAGAAGT+TGG | - | chr4.1:4776358-4776377 | MS.gene06055:CDS | 40.0% | |
| TAACTCCGATTCTCTCTCAT+CGG | + | chr4.1:4776051-4776070 | None:intergenic | 40.0% | |
| TAAGGCAGAGGAAGAATGTT+TGG | - | chr4.1:4776094-4776113 | MS.gene06055:CDS | 40.0% | |
| TGCTATCATGATCATCTGGA+GGG | - | chr4.1:4775489-4775508 | MS.gene06055:CDS | 40.0% | |
| TTGCAGGGTAAAAAGGAAGA+AGG | - | chr4.1:4777232-4777251 | MS.gene06055:CDS | 40.0% | |
| ! | ATTTGAGTTCTCTGCACTTC+AGG | - | chr4.1:4776430-4776449 | MS.gene06055:CDS | 40.0% |
| ! | CCAAGTTGACAATCTGCAAA+AGG | - | chr4.1:4776508-4776527 | MS.gene06055:CDS | 40.0% |
| ! | CCTTTTGCAGATTGTCAACT+TGG | + | chr4.1:4776511-4776530 | None:intergenic | 40.0% |
| ! | TTCGGAGAATAGTGGAAGAA+CGG | - | chr4.1:4776660-4776679 | MS.gene06055:CDS | 40.0% |
| !! | AGAGGAAGAGAGCTTTAGAA+AGG | - | chr4.1:4776931-4776950 | MS.gene06055:CDS | 40.0% |
| !! | CGTATGAGATGTTTGAGTTG+CGG | + | chr4.1:4777126-4777145 | None:intergenic | 40.0% |
| !! | TTCTAAAGCTCTCTTCCTCT+TGG | + | chr4.1:4776931-4776950 | None:intergenic | 40.0% |
| !!! | CACTTTTCAGGTCTTCAACT+TGG | + | chr4.1:4776829-4776848 | None:intergenic | 40.0% |
| AACGATGTGGATAAGGAGTC+TGG | - | chr4.1:4775890-4775909 | MS.gene06055:CDS | 45.0% | |
| AATCTGTCAGCGAGATGAGT+AGG | - | chr4.1:4777164-4777183 | MS.gene06055:CDS | 45.0% | |
| AGATCAGATGGCAGCTGATT+TGG | - | chr4.1:4776799-4776818 | MS.gene06055:CDS | 45.0% | |
| AGCGAGATGAGTAGGGAAAA+GGG | - | chr4.1:4777172-4777191 | MS.gene06055:CDS | 45.0% | |
| ATCTGTCAGCGAGATGAGTA+GGG | - | chr4.1:4777165-4777184 | MS.gene06055:CDS | 45.0% | |
| ATTGTCAACTTGGGCTGTGA+AGG | + | chr4.1:4776501-4776520 | None:intergenic | 45.0% | |
| CATAAGTCTCTCTTGCTCCA+TGG | + | chr4.1:4775853-4775872 | None:intergenic | 45.0% | |
| CATGGAGCAAGAGAGACTTA+TGG | - | chr4.1:4775851-4775870 | MS.gene06055:CDS | 45.0% | |
| CTGCTATCATGATCATCTGG+AGG | - | chr4.1:4775488-4775507 | MS.gene06055:CDS | 45.0% | |
| GAAGAGTTCCGTGAAGACAT+TGG | - | chr4.1:4776770-4776789 | MS.gene06055:CDS | 45.0% | |
| GATGACAAACTTGGCGAAGA+TGG | - | chr4.1:4775426-4775445 | MS.gene06055:CDS | 45.0% | |
| GCTATCATGATCATCTGGAG+GGG | - | chr4.1:4775490-4775509 | MS.gene06055:CDS | 45.0% | |
| GGAGCGCAATGACTATCTAA+AGG | - | chr4.1:4777468-4777487 | MS.gene06055:intron | 45.0% | |
| GGAGGTTGAGAGAAAAACCA+TGG | - | chr4.1:4775833-4775852 | MS.gene06055:CDS | 45.0% | |
| GGATAAACTTTCCAAGGCAG+AGG | - | chr4.1:4776451-4776470 | MS.gene06055:CDS | 45.0% | |
| GGCCGAAAGCAATACAAATG+AGG | - | chr4.1:4775689-4775708 | MS.gene06055:CDS | 45.0% | |
| GGTGCACAGTGTAATTGTGT+GGG | + | chr4.1:4775295-4775314 | None:intergenic | 45.0% | |
| GGTTGAAAAGCTAGAGGCAA+AGG | - | chr4.1:4777273-4777292 | MS.gene06055:CDS | 45.0% | |
| GTGTCAGATGACTAATCGCT+TGG | + | chr4.1:4775980-4775999 | None:intergenic | 45.0% | |
| GTTCTTCAGCTACACTCTTC+TGG | + | chr4.1:4776247-4776266 | None:intergenic | 45.0% | |
| TCACATCGCTAAACTGACAC+AGG | - | chr4.1:4776349-4776368 | MS.gene06055:CDS | 45.0% | |
| TCATCTGACACAGCAGAAGT+TGG | - | chr4.1:4775989-4776008 | MS.gene06055:CDS | 45.0% | |
| TGAAGACCTGAAAAGTGACC+TGG | - | chr4.1:4776832-4776851 | MS.gene06055:CDS | 45.0% | |
| TGGTGCACAGTGTAATTGTG+TGG | + | chr4.1:4775296-4775315 | None:intergenic | 45.0% | |
| ! | AAGGAGTCTGGAATTGGAGA+TGG | - | chr4.1:4775902-4775921 | MS.gene06055:CDS | 45.0% |
| ! | AGGAGTCTGGAATTGGAGAT+GGG | - | chr4.1:4775903-4775922 | MS.gene06055:CDS | 45.0% |
| ! | AGGGGCACAATTTAGAGTTG+AGG | - | chr4.1:4775508-4775527 | MS.gene06055:CDS | 45.0% |
| ! | CATTTGTTGGAGGAGTTGCA+GGG | - | chr4.1:4777217-4777236 | MS.gene06055:CDS | 45.0% |
| ! | CCGAAGATCCAGGTTTTTGT+TGG | + | chr4.1:4776645-4776664 | None:intergenic | 45.0% |
| ! | CTGCACGTTTAAGTTTGACC+TGG | + | chr4.1:4776727-4776746 | None:intergenic | 45.0% |
| ! | GGGGCACAATTTAGAGTTGA+GGG | - | chr4.1:4775509-4775528 | MS.gene06055:CDS | 45.0% |
| ! | GTGGATAAGGAGTCTGGAAT+TGG | - | chr4.1:4775896-4775915 | MS.gene06055:CDS | 45.0% |
| ! | TAGTTGGTACAATGACTGCC+AGG | - | chr4.1:4776706-4776725 | MS.gene06055:CDS | 45.0% |
| ! | TCGGAGAATAGTGGAAGAAC+GGG | - | chr4.1:4776661-4776680 | MS.gene06055:CDS | 45.0% |
| ! | TCTCTTCCTCTTGGTTTGAC+AGG | + | chr4.1:4776922-4776941 | None:intergenic | 45.0% |
| ! | TGACTTGGAAGTTCAGCTTG+TGG | - | chr4.1:4775758-4775777 | MS.gene06055:CDS | 45.0% |
| !! | GGAAGAGAGCTTTAGAAAGG+CGG | - | chr4.1:4776934-4776953 | MS.gene06055:CDS | 45.0% |
| !! | TTCAGAGAGCACTTGAAGAC+AGG | - | chr4.1:4776975-4776994 | MS.gene06055:CDS | 45.0% |
| !!! | TCTCTTCCAGGTCACTTTTC+AGG | + | chr4.1:4776841-4776860 | None:intergenic | 45.0% |
| AAGGCAGAGGAAGAGTCTTC+AGG | - | chr4.1:4776464-4776483 | MS.gene06055:CDS | 50.0% | |
| CAGCGAGATGAGTAGGGAAA+AGG | - | chr4.1:4777171-4777190 | MS.gene06055:CDS | 50.0% | |
| CAGCTTCAGGGAGCTAAAAC+AGG | - | chr4.1:4775258-4775277 | MS.gene06055:CDS | 50.0% | |
| CCACTATTCTCCGAAGATCC+AGG | + | chr4.1:4776655-4776674 | None:intergenic | 50.0% | |
| CCTCAAACAAAGCTGCCTGA+TGG | + | chr4.1:4777434-4777453 | None:intergenic | 50.0% | |
| CCTCATCTCCTTTCTCTTCC+AGG | + | chr4.1:4776853-4776872 | None:intergenic | 50.0% | |
| CCTGCAACTCCTCCAACAAA+TGG | + | chr4.1:4777219-4777238 | None:intergenic | 50.0% | |
| CCTGGAAGAGAAAGGAGATG+AGG | - | chr4.1:4776850-4776869 | MS.gene06055:CDS | 50.0% | |
| CCTGGATCTTCGGAGAATAG+TGG | - | chr4.1:4776652-4776671 | MS.gene06055:CDS | 50.0% | |
| GAACCTGGGAGAGGAAAAGA+GGG | - | chr4.1:4777405-4777424 | MS.gene06055:intron | 50.0% | |
| GAATGTATTGCGGCAGGAAG+TGG | - | chr4.1:4775713-4775732 | MS.gene06055:CDS | 50.0% | |
| GCGAGATGAGTAGGGAAAAG+GGG | - | chr4.1:4777173-4777192 | MS.gene06055:CDS | 50.0% | |
| GCTTTGCCTGTCAAACCAAG+AGG | - | chr4.1:4776913-4776932 | MS.gene06055:CDS | 50.0% | |
| GGAGGAGTTGCAGGGTAAAA+AGG | - | chr4.1:4777225-4777244 | MS.gene06055:CDS | 50.0% | |
| TGAACCTGGGAGAGGAAAAG+AGG | - | chr4.1:4777404-4777423 | MS.gene06055:intron | 50.0% | |
| TGAAGACTCTTCCTCTGCCT+TGG | + | chr4.1:4776465-4776484 | None:intergenic | 50.0% | |
| TGAGGTGAATGTATTGCGGC+AGG | - | chr4.1:4775707-4775726 | MS.gene06055:CDS | 50.0% | |
| ! | CCATTTGTTGGAGGAGTTGC+AGG | - | chr4.1:4777216-4777235 | MS.gene06055:CDS | 50.0% |
| !! | CCATCAGGCAGCTTTGTTTG+AGG | - | chr4.1:4777431-4777450 | MS.gene06055:intron | 50.0% |
| ACATGCACAGGCCCTCACAA+TGG | - | chr4.1:4776595-4776614 | MS.gene06055:CDS | 55.0% | |
| AGGAAAAGAGGGAGGCCATC+AGG | - | chr4.1:4777416-4777435 | MS.gene06055:intron | 55.0% | |
| GACACAGGAGAAGTTGGAGC+TGG | - | chr4.1:4776364-4776383 | MS.gene06055:CDS | 55.0% | |
| GCTAGAGGCAAAGGCAAGAG+AGG | - | chr4.1:4777282-4777301 | MS.gene06055:CDS | 55.0% | |
| ! | AGAGGAGGGTGTGTTGAACC+TGG | - | chr4.1:4777390-4777409 | MS.gene06055:intron | 55.0% |
| ! | GAGGAGGGTGTGTTGAACCT+GGG | - | chr4.1:4777391-4777410 | MS.gene06055:intron | 55.0% |
| AAGACTCGAAGGGGCCAGAG+AGG | - | chr4.1:4777502-4777521 | MS.gene06055:CDS | 60.0% | |
| CCTGGGAGAGGAAAAGAGGG+AGG | - | chr4.1:4777408-4777427 | MS.gene06055:intron | 60.0% | |
| GGGTGTGTTGAACCTGGGAG+AGG | - | chr4.1:4777396-4777415 | MS.gene06055:intron | 60.0% | |
| ! | CCTCCCTCTTTTCCTCTCCC+AGG | + | chr4.1:4777411-4777430 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 4775222 | 4777531 | 4775222 | ID=MS.gene06055 |
| chr4.1 | mRNA | 4775222 | 4777531 | 4775222 | ID=MS.gene06055.t1;Parent=MS.gene06055 |
| chr4.1 | exon | 4777474 | 4777531 | 4777474 | ID=MS.gene06055.t1.exon1;Parent=MS.gene06055.t1 |
| chr4.1 | CDS | 4777474 | 4777531 | 4777474 | ID=cds.MS.gene06055.t1;Parent=MS.gene06055.t1 |
| chr4.1 | exon | 4775222 | 4777368 | 4775222 | ID=MS.gene06055.t1.exon2;Parent=MS.gene06055.t1 |
| chr4.1 | CDS | 4775222 | 4777368 | 4775222 | ID=cds.MS.gene06055.t1;Parent=MS.gene06055.t1 |
| Gene Sequence |
| Protein sequence |
