Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060871.t1 | XP_003608797.1 | 100 | 168 | 0 | 0 | 1 | 168 | 111 | 278 | 4.40E-98 | 367.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060871.t1 | Q8L7W5 | 82.7 | 168 | 29 | 0 | 1 | 168 | 113 | 280 | 1.0e-87 | 323.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060871.t1 | G7JK82 | 100.0 | 168 | 0 | 0 | 1 | 168 | 111 | 278 | 3.2e-98 | 367.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05996 | MS.gene060871 | -0.804222 | 2.40E-49 | -1.69E-46 |
| MS.gene060871 | MS.gene060872 | 0.843363 | 1.47E-58 | -1.69E-46 |
| MS.gene060871 | MS.gene28120 | 0.802952 | 4.40E-49 | -1.69E-46 |
| MS.gene060871 | MS.gene72111 | 0.811894 | 5.57E-51 | -1.69E-46 |
| MS.gene060871 | MS.gene81068 | 0.804925 | 1.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060871.t1 | MTR_4g102060 | 100.000 | 168 | 0 | 0 | 1 | 168 | 111 | 278 | 1.77e-125 | 355 |
| MS.gene060871.t1 | MTR_7g074900 | 70.659 | 167 | 49 | 0 | 2 | 168 | 112 | 278 | 3.91e-92 | 270 |
| MS.gene060871.t1 | MTR_6g039970 | 49.390 | 164 | 83 | 0 | 2 | 165 | 94 | 257 | 1.60e-58 | 184 |
| MS.gene060871.t1 | MTR_5g035190 | 47.904 | 167 | 87 | 0 | 2 | 168 | 40 | 206 | 1.93e-58 | 182 |
| MS.gene060871.t1 | MTR_8g063210 | 48.171 | 164 | 85 | 0 | 2 | 165 | 94 | 257 | 5.41e-58 | 182 |
| MS.gene060871.t1 | MTR_5g035190 | 47.904 | 167 | 87 | 0 | 2 | 168 | 94 | 260 | 1.11e-57 | 181 |
| MS.gene060871.t1 | MTR_5g040320 | 31.788 | 151 | 94 | 4 | 19 | 164 | 101 | 247 | 1.76e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060871.t1 | AT4G12110 | 82.738 | 168 | 29 | 0 | 1 | 168 | 113 | 280 | 1.90e-109 | 314 |
| MS.gene060871.t1 | AT4G22756 | 82.738 | 168 | 29 | 0 | 1 | 168 | 113 | 280 | 6.10e-108 | 310 |
| MS.gene060871.t1 | AT4G22755 | 80.120 | 166 | 33 | 0 | 1 | 166 | 109 | 274 | 4.19e-102 | 295 |
| MS.gene060871.t1 | AT1G07420 | 47.904 | 167 | 87 | 0 | 2 | 168 | 56 | 222 | 1.04e-59 | 185 |
| MS.gene060871.t1 | AT2G29390 | 47.590 | 166 | 87 | 0 | 2 | 167 | 11 | 176 | 2.20e-59 | 182 |
| MS.gene060871.t1 | AT2G29390 | 47.590 | 166 | 87 | 0 | 2 | 167 | 11 | 176 | 2.20e-59 | 182 |
| MS.gene060871.t1 | AT1G07420 | 47.904 | 167 | 87 | 0 | 2 | 168 | 94 | 260 | 3.07e-59 | 185 |
| MS.gene060871.t1 | AT2G29390 | 47.590 | 166 | 87 | 0 | 2 | 167 | 53 | 218 | 4.47e-59 | 183 |
| MS.gene060871.t1 | AT2G29390 | 48.171 | 164 | 85 | 0 | 2 | 165 | 87 | 250 | 9.92e-59 | 184 |
| MS.gene060871.t1 | AT2G29390 | 48.171 | 164 | 85 | 0 | 2 | 165 | 94 | 257 | 1.32e-58 | 183 |
| MS.gene060871.t1 | AT2G29390 | 44.886 | 176 | 85 | 1 | 2 | 165 | 94 | 269 | 3.81e-55 | 175 |
| MS.gene060871.t1 | AT1G14290 | 33.113 | 151 | 92 | 4 | 19 | 164 | 23 | 169 | 9.86e-14 | 66.2 |
| MS.gene060871.t1 | AT1G14290 | 33.113 | 151 | 92 | 4 | 19 | 164 | 97 | 243 | 2.08e-13 | 66.2 |
| MS.gene060871.t1 | AT1G69640 | 30.464 | 151 | 96 | 4 | 19 | 164 | 98 | 244 | 5.66e-11 | 59.7 |
Find 38 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGCGGAGATCTTGATTT+TGG | 0.150585 | 8.4:+22866495 | MS.gene060871:CDS |
| ACATATTGTGATTACATCTA+TGG | 0.218915 | 8.4:+22868531 | MS.gene060871:CDS |
| ATAGATTTCTGCATAATAAA+TGG | 0.221052 | 8.4:+22866401 | MS.gene060871:CDS |
| CTTGGACCGGCTATGGTTCC+TGG | 0.248242 | 8.4:+22866532 | MS.gene060871:CDS |
| TATTGTAGATGATTGGAATT+AGG | 0.278974 | 8.4:+22866290 | None:intergenic |
| ATTTATTATGCAGAAATCTA+TGG | 0.288607 | 8.4:-22866399 | None:intergenic |
| CTGGTCACATGATTACATTT+TGG | 0.315803 | 8.4:+22866551 | MS.gene060871:CDS |
| TGGAGGATTATACGAATTAC+TGG | 0.338989 | 8.4:+22866374 | MS.gene060871:CDS |
| TGCTCAGCGCCACCATAAAA+TGG | 0.348188 | 8.4:-22868450 | None:intergenic |
| TAGATTTCTGCATAATAAAT+GGG | 0.360869 | 8.4:+22866402 | MS.gene060871:CDS |
| TGCGGCGCCTTATGCACATT+GGG | 0.401426 | 8.4:+22866477 | MS.gene060871:CDS |
| CATGAATATCAAGCTCCAAT+TGG | 0.447424 | 8.4:+22866451 | MS.gene060871:CDS |
| ATCTCCGCCCAATGTGCATA+AGG | 0.458453 | 8.4:-22866484 | None:intergenic |
| TAAGGCGCCGCAAATCCAAT+TGG | 0.460635 | 8.4:-22866466 | None:intergenic |
| CACGATTACCATCATTATGT+TGG | 0.470556 | 8.4:+22868474 | MS.gene060871:CDS |
| TTGCGGCGCCTTATGCACAT+TGG | 0.470678 | 8.4:+22866476 | MS.gene060871:CDS |
| TCAAGCTCCAATTGGATTTG+CGG | 0.480625 | 8.4:+22866459 | MS.gene060871:CDS |
| TCAGAAGAAGATACTTCAAA+AGG | 0.505907 | 8.4:+22868679 | MS.gene060871:CDS |
| ATGTCAGGTATGACTTCCCC+TGG | 0.513299 | 8.4:+22868409 | MS.gene060871:intron |
| TAGATGATTGGAATTAGGAC+GGG | 0.513499 | 8.4:+22866295 | None:intergenic |
| AAACTGATGCAAAATTGCTC+TGG | 0.537490 | 8.4:-22868506 | None:intergenic |
| GTAGATGATTGGAATTAGGA+CGG | 0.538786 | 8.4:+22866294 | None:intergenic |
| GATTACCATCATTATGTTGG+AGG | 0.541524 | 8.4:+22868477 | MS.gene060871:CDS |
| ATGTGACCAGGAACCATAGC+CGG | 0.548009 | 8.4:-22866538 | None:intergenic |
| ACGGGGTTACCGTTACCGTC+TGG | 0.551559 | 8.4:+22866313 | MS.gene060871:CDS |
| TTTGTCCTCCAACATAATGA+TGG | 0.557552 | 8.4:-22868482 | None:intergenic |
| GTACCCGCTGTGTGTATCAA+TGG | 0.560522 | 8.4:-22866602 | None:intergenic |
| GGCGCCTTATGCACATTGGG+CGG | 0.588545 | 8.4:+22866480 | MS.gene060871:CDS |
| ATCTCAAATCCAGACGGTAA+CGG | 0.597339 | 8.4:-22866322 | None:intergenic |
| GTGTATCAATGGCTTCAACT+TGG | 0.614849 | 8.4:-22866591 | None:intergenic |
| AGATTTCTGCATAATAAATG+GGG | 0.616388 | 8.4:+22866403 | MS.gene060871:CDS |
| CAAAATGTAATCATGTGACC+AGG | 0.621665 | 8.4:-22866550 | None:intergenic |
| AGATGATTGGAATTAGGACG+GGG | 0.631542 | 8.4:+22866296 | None:intergenic |
| AAGCCATTGATACACACAGC+GGG | 0.635131 | 8.4:+22866599 | MS.gene060871:CDS |
| ATAGCCGGTCCAAGAAAAGA+CGG | 0.640967 | 8.4:-22866523 | None:intergenic |
| GATAATATCTCAAATCCAGA+CGG | 0.645775 | 8.4:-22866328 | None:intergenic |
| TTACATCTATGGAACAGACA+AGG | 0.732719 | 8.4:+22868542 | MS.gene060871:CDS |
| GAAGCCATTGATACACACAG+CGG | 0.790862 | 8.4:+22866598 | MS.gene060871:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATCAACAAAAAA+AGG | - | chr8.4:22866644-22866663 | None:intergenic | 10.0% |
| !! | ATAATAAGTTAAATATGAAA+TGG | + | chr8.4:22867596-22867615 | MS.gene060871:intron | 10.0% |
| !! | ATAATACACAAAAAAATCAA+AGG | - | chr8.4:22866789-22866808 | None:intergenic | 15.0% |
| !!! | ACAAAATATATTCCATTTTA+TGG | + | chr8.4:22868438-22868457 | MS.gene060871:CDS | 15.0% |
| !!! | ATAAAATGGAATATATTTTG+TGG | - | chr8.4:22868439-22868458 | None:intergenic | 15.0% |
| !!! | ATAGATTGTCTTATTATATT+TGG | + | chr8.4:22868110-22868129 | MS.gene060871:intron | 15.0% |
| !!! | ATTTAACTTATTATGAGAAA+AGG | - | chr8.4:22867590-22867609 | None:intergenic | 15.0% |
| !!! | TAAAATGGAATATATTTTGT+GGG | - | chr8.4:22868438-22868457 | None:intergenic | 15.0% |
| !!! | TTTAAAATAGTGATTATATC+TGG | + | chr8.4:22868180-22868199 | MS.gene060871:intron | 15.0% |
| !! | AAAAAAATCAAAGGAGTAAA+AGG | - | chr8.4:22866780-22866799 | None:intergenic | 20.0% |
| !! | AAAAATTTGAAGGACAATTT+AGG | + | chr8.4:22867730-22867749 | MS.gene060871:intron | 20.0% |
| !! | AAAATTTGAAGGACAATTTA+GGG | + | chr8.4:22867731-22867750 | MS.gene060871:intron | 20.0% |
| !! | AAACAAAAAAAATGCTAACT+TGG | + | chr8.4:22867619-22867638 | MS.gene060871:intron | 20.0% |
| !! | AAGACACAATAATCTAAATA+CGG | - | chr8.4:22867686-22867705 | None:intergenic | 20.0% |
| !! | ATAGATTTCTGCATAATAAA+TGG | + | chr8.4:22866401-22866420 | MS.gene060871:CDS | 20.0% |
| !! | ATATAGTTGAATGTCAAAAA+TGG | + | chr8.4:22867968-22867987 | MS.gene060871:intron | 20.0% |
| !! | ATATCTATCTAATGAAAAAG+AGG | - | chr8.4:22868313-22868332 | None:intergenic | 20.0% |
| !! | ATTTATTATGCAGAAATCTA+TGG | - | chr8.4:22866402-22866421 | None:intergenic | 20.0% |
| !! | CAATTGAATGTAAAAATTGT+AGG | + | chr8.4:22868054-22868073 | MS.gene060871:intron | 20.0% |
| !! | CATTTAAAGACAATTTAAAC+GGG | - | chr8.4:22867655-22867674 | None:intergenic | 20.0% |
| !! | CCATTTAAAGACAATTTAAA+CGG | - | chr8.4:22867656-22867675 | None:intergenic | 20.0% |
| !! | GAATATTAGGTAAAAGATAA+AGG | - | chr8.4:22867509-22867528 | None:intergenic | 20.0% |
| !! | GATTATTAGGAAAAAGATAA+AGG | + | chr8.4:22867892-22867911 | MS.gene060871:intron | 20.0% |
| !! | GTTGAAGAAAAAAAATTTGA+AGG | + | chr8.4:22867720-22867739 | MS.gene060871:intron | 20.0% |
| !! | GTTTCTTAGTAAGATTATTA+GGG | + | chr8.4:22866845-22866864 | MS.gene060871:intron | 20.0% |
| !! | TAGATTTCTGCATAATAAAT+GGG | + | chr8.4:22866402-22866421 | MS.gene060871:CDS | 20.0% |
| !! | TATCTATCTAATGAAAAAGA+GGG | - | chr8.4:22868312-22868331 | None:intergenic | 20.0% |
| !! | TGTTTCTTAGTAAGATTATT+AGG | + | chr8.4:22866844-22866863 | MS.gene060871:intron | 20.0% |
| !!! | AAATATATTCCATTTTATGG+TGG | + | chr8.4:22868441-22868460 | MS.gene060871:CDS | 20.0% |
| !!! | ATTATTAGTGTATTTTTTGG+TGG | + | chr8.4:22866354-22866373 | MS.gene060871:CDS | 20.0% |
| !!! | CTTTTACCTAATATTCATTT+CGG | + | chr8.4:22867513-22867532 | MS.gene060871:intron | 20.0% |
| !!! | CTTTTTCCTAATAATCATTT+TGG | - | chr8.4:22867888-22867907 | None:intergenic | 20.0% |
| !!! | GCAATTATTAGTGTATTTTT+TGG | + | chr8.4:22866351-22866370 | MS.gene060871:CDS | 20.0% |
| ! | AAAATAGTGATTATATCTGG+TGG | + | chr8.4:22868183-22868202 | MS.gene060871:intron | 25.0% |
| ! | AAAGGACCAAAATGATTATT+AGG | + | chr8.4:22867879-22867898 | MS.gene060871:intron | 25.0% |
| ! | AAGCAATCAAACATAAAAGT+TGG | - | chr8.4:22868379-22868398 | None:intergenic | 25.0% |
| ! | ACATATTGTGATTACATCTA+TGG | + | chr8.4:22868531-22868550 | MS.gene060871:CDS | 25.0% |
| ! | AGATTTCTGCATAATAAATG+GGG | + | chr8.4:22866403-22866422 | MS.gene060871:CDS | 25.0% |
| ! | AGCAATCAAACATAAAAGTT+GGG | - | chr8.4:22868378-22868397 | None:intergenic | 25.0% |
| ! | AGTCCAATTAAAAATATTCC+TGG | + | chr8.4:22867249-22867268 | MS.gene060871:intron | 25.0% |
| ! | ATCTATCTAATGAAAAAGAG+GGG | - | chr8.4:22868311-22868330 | None:intergenic | 25.0% |
| ! | ATTACTTTATGCTGAAAGTT+CGG | + | chr8.4:22867098-22867117 | MS.gene060871:intron | 25.0% |
| ! | CCGTTTAAATTGTCTTTAAA+TGG | + | chr8.4:22867653-22867672 | MS.gene060871:intron | 25.0% |
| ! | TGTCTGTAGGATTTAATATT+CGG | + | chr8.4:22868254-22868273 | MS.gene060871:intron | 25.0% |
| ! | TTAAGACCGAAATGAATATT+AGG | - | chr8.4:22867522-22867541 | None:intergenic | 25.0% |
| !! | TAGAAACTTTTTACAAGCTT+TGG | + | chr8.4:22867363-22867382 | MS.gene060871:intron | 25.0% |
| !!! | AAAAAATGTTGACTTAGCAA+TGG | - | chr8.4:22867808-22867827 | None:intergenic | 25.0% |
| !!! | ACATTAAGTGTTCTAAAAAG+AGG | - | chr8.4:22867199-22867218 | None:intergenic | 25.0% |
| !!! | TGTCCAGGAATATTTTTAAT+TGG | - | chr8.4:22867255-22867274 | None:intergenic | 25.0% |
| AAAAGGAAAATGACAGAAAG+TGG | - | chr8.4:22866627-22866646 | None:intergenic | 30.0% | |
| AAGAAACCTGTTTATGATCT+TGG | + | chr8.4:22867129-22867148 | MS.gene060871:intron | 30.0% | |
| ACTACAGCATAAACTTTCAA+AGG | - | chr8.4:22867280-22867299 | None:intergenic | 30.0% | |
| AGAAACCTGTTTATGATCTT+GGG | + | chr8.4:22867130-22867149 | MS.gene060871:intron | 30.0% | |
| ATCATGCTGATGTTTATCAA+TGG | - | chr8.4:22868283-22868302 | None:intergenic | 30.0% | |
| ATTACGTCCAATTGTTTGAA+TGG | - | chr8.4:22867075-22867094 | None:intergenic | 30.0% | |
| GATAATATCTCAAATCCAGA+CGG | - | chr8.4:22866331-22866350 | None:intergenic | 30.0% | |
| TAACTGTAGAAGCGAATTAA+AGG | - | chr8.4:22868008-22868027 | None:intergenic | 30.0% | |
| TACTCACTTGGAAAAGATAA+AGG | + | chr8.4:22867861-22867880 | MS.gene060871:intron | 30.0% | |
| TAGAAGCGAATTAAAGGAAT+TGG | - | chr8.4:22868002-22868021 | None:intergenic | 30.0% | |
| TATGTGAATATGAAGTGAGA+TGG | - | chr8.4:22867440-22867459 | None:intergenic | 30.0% | |
| TCATAAACAGGTTTCTTCTA+AGG | - | chr8.4:22867126-22867145 | None:intergenic | 30.0% | |
| TCTATCTAATGAAAAAGAGG+GGG | - | chr8.4:22868310-22868329 | None:intergenic | 30.0% | |
| TGCTTTACTTATCATATGTC+AGG | + | chr8.4:22868394-22868413 | MS.gene060871:intron | 30.0% | |
| TTAAATCCTACAGACAAGAT+TGG | - | chr8.4:22868250-22868269 | None:intergenic | 30.0% | |
| TTACGTCCAATTGTTTGAAT+GGG | - | chr8.4:22867074-22867093 | None:intergenic | 30.0% | |
| TTCCAAAAGGACATTCATTA+CGG | - | chr8.4:22866675-22866694 | None:intergenic | 30.0% | |
| TTGCAAATCAATTTCACATG+TGG | - | chr8.4:22868623-22868642 | None:intergenic | 30.0% | |
| ! | AATATATTTTGTGGGATTCC+AGG | - | chr8.4:22868430-22868449 | None:intergenic | 30.0% |
| ! | ATATATTTTGTGGGATTCCA+GGG | - | chr8.4:22868429-22868448 | None:intergenic | 30.0% |
| ! | GATCGATTTCGAAAAGATAA+AGG | - | chr8.4:22867558-22867577 | None:intergenic | 30.0% |
| ! | TGGAAACAGAATTTTGTTGA+AGG | + | chr8.4:22867170-22867189 | MS.gene060871:intron | 30.0% |
| !! | TTTGCTTTGTTTATGTCACA+GGG | + | chr8.4:22868647-22868666 | MS.gene060871:intron | 30.0% |
| !!! | ACATGATTACATTTTGGTTG+TGG | + | chr8.4:22866557-22866576 | MS.gene060871:CDS | 30.0% |
| !!! | ATTAGTGTATTTTTTGGTGG+AGG | + | chr8.4:22866357-22866376 | MS.gene060871:CDS | 30.0% |
| !!! | TTTTGCTTTGTTTATGTCAC+AGG | + | chr8.4:22868646-22868665 | MS.gene060871:intron | 30.0% |
| AAACCTGTTTATGATCTTGG+GGG | + | chr8.4:22867132-22867151 | MS.gene060871:intron | 35.0% | |
| AAACTGATGCAAAATTGCTC+TGG | - | chr8.4:22868509-22868528 | None:intergenic | 35.0% | |
| AAACTTTCAAAGGTTTGTCC+AGG | - | chr8.4:22867270-22867289 | None:intergenic | 35.0% | |
| AAAGGACATTCATTACGGTT+TGG | - | chr8.4:22866670-22866689 | None:intergenic | 35.0% | |
| ACCGACAATAATTCTGCATT+TGG | - | chr8.4:22867048-22867067 | None:intergenic | 35.0% | |
| AGGACAAAAGTTTACTCACT+TGG | + | chr8.4:22867849-22867868 | MS.gene060871:intron | 35.0% | |
| AGTTCATATGCTGTGAGAAA+AGG | + | chr8.4:22867829-22867848 | MS.gene060871:intron | 35.0% | |
| ATCTCAAGGATCTGTAATAG+TGG | + | chr8.4:22866705-22866724 | MS.gene060871:intron | 35.0% | |
| CAAAATGTAATCATGTGACC+AGG | - | chr8.4:22866553-22866572 | None:intergenic | 35.0% | |
| CACGATTACCATCATTATGT+TGG | + | chr8.4:22868474-22868493 | MS.gene060871:CDS | 35.0% | |
| CATGAATATCAAGCTCCAAT+TGG | + | chr8.4:22866451-22866470 | MS.gene060871:CDS | 35.0% | |
| CCAAATTTCAATGCAGAAAC+TGG | - | chr8.4:22868353-22868372 | None:intergenic | 35.0% | |
| CCAGTTTCTGCATTGAAATT+TGG | + | chr8.4:22868350-22868369 | MS.gene060871:intron | 35.0% | |
| GAAACCTGTTTATGATCTTG+GGG | + | chr8.4:22867131-22867150 | MS.gene060871:intron | 35.0% | |
| GACTTAGCAATGGTTGTATA+AGG | - | chr8.4:22867798-22867817 | None:intergenic | 35.0% | |
| GATTACCATCATTATGTTGG+AGG | + | chr8.4:22868477-22868496 | MS.gene060871:CDS | 35.0% | |
| GCCAAATGCAGAATTATTGT+CGG | + | chr8.4:22867044-22867063 | MS.gene060871:intron | 35.0% | |
| TAATTGCCAATCTTGTCTGT+AGG | + | chr8.4:22868241-22868260 | MS.gene060871:intron | 35.0% | |
| TACAAGCAAGGTTGTTAAAG+TGG | - | chr8.4:22866924-22866943 | None:intergenic | 35.0% | |
| TACACACACACTTACACATA+TGG | + | chr8.4:22867466-22867485 | MS.gene060871:intron | 35.0% | |
| TCTCAAGGATCTGTAATAGT+GGG | + | chr8.4:22866706-22866725 | MS.gene060871:intron | 35.0% | |
| TGCATTTGGCTGTAAATTGA+TGG | - | chr8.4:22867034-22867053 | None:intergenic | 35.0% | |
| TGGAGGATTATACGAATTAC+TGG | + | chr8.4:22866374-22866393 | MS.gene060871:CDS | 35.0% | |
| TTAACAACCTTGCTTGTATG+AGG | + | chr8.4:22866926-22866945 | MS.gene060871:intron | 35.0% | |
| TTACATCTATGGAACAGACA+AGG | + | chr8.4:22868542-22868561 | MS.gene060871:CDS | 35.0% | |
| TTAGCAATGGTTGTATAAGG+TGG | - | chr8.4:22867795-22867814 | None:intergenic | 35.0% | |
| TTTGTCCTCCAACATAATGA+TGG | - | chr8.4:22868485-22868504 | None:intergenic | 35.0% | |
| ! | AACCGTAATGAATGTCCTTT+TGG | + | chr8.4:22866670-22866689 | MS.gene060871:intron | 35.0% |
| ! | CTGGTCACATGATTACATTT+TGG | + | chr8.4:22866551-22866570 | MS.gene060871:CDS | 35.0% |
| ! | GAAGGACAATTTAGGGATTT+TGG | + | chr8.4:22867738-22867757 | MS.gene060871:intron | 35.0% |
| ! | GATGCTTCAATTTTCTGACA+CGG | + | chr8.4:22866953-22866972 | MS.gene060871:intron | 35.0% |
| ! | TATATTTTGTGGGATTCCAG+GGG | - | chr8.4:22868428-22868447 | None:intergenic | 35.0% |
| ! | TGTTTATGTCACAGGGTTTT+CGG | + | chr8.4:22868654-22868673 | MS.gene060871:intron | 35.0% |
| !! | TCAAATTCAAGTTGCAAGCA+CGG | - | chr8.4:22868219-22868238 | None:intergenic | 35.0% |
| !!! | GGGTTGCTTTTTGCTTTTAT+GGG | + | chr8.4:22866726-22866745 | MS.gene060871:intron | 35.0% |
| !!! | GGTTGCTTTTTGCTTTTATG+GGG | + | chr8.4:22866727-22866746 | MS.gene060871:intron | 35.0% |
| !!! | TGGGTTGCTTTTTGCTTTTA+TGG | + | chr8.4:22866725-22866744 | MS.gene060871:intron | 35.0% |
| AACCTGTTTATGATCTTGGG+GGG | + | chr8.4:22867133-22867152 | MS.gene060871:intron | 40.0% | |
| AGCTGATACAGTTGCAATTG+CGG | + | chr8.4:22866879-22866898 | MS.gene060871:intron | 40.0% | |
| ATACAGTTGCAATTGCGGTT+GGG | + | chr8.4:22866884-22866903 | MS.gene060871:intron | 40.0% | |
| ATCACAACCTCATACAAGCA+AGG | - | chr8.4:22866936-22866955 | None:intergenic | 40.0% | |
| ATCTCAAATCCAGACGGTAA+CGG | - | chr8.4:22866325-22866344 | None:intergenic | 40.0% | |
| ATGCAGAAACTGGAGAAGAA+TGG | - | chr8.4:22868343-22868362 | None:intergenic | 40.0% | |
| CAATCCACCAGATATAAGCA+CGG | - | chr8.4:22868158-22868177 | None:intergenic | 40.0% | |
| CACCAAGACGTAAATCTTTC+CGG | + | chr8.4:22867320-22867339 | MS.gene060871:intron | 40.0% | |
| GGTTCACCCATTCAAACAAT+TGG | + | chr8.4:22867065-22867084 | MS.gene060871:intron | 40.0% | |
| GTGTATCAATGGCTTCAACT+TGG | - | chr8.4:22866594-22866613 | None:intergenic | 40.0% | |
| TCAAGCTCCAATTGGATTTG+CGG | + | chr8.4:22866459-22866478 | MS.gene060871:CDS | 40.0% | |
| TGCAACTATAGATCTCACTC+AGG | - | chr8.4:22866753-22866772 | None:intergenic | 40.0% | |
| TTATATCTGGTGGAATGTCC+AGG | + | chr8.4:22868193-22868212 | MS.gene060871:intron | 40.0% | |
| ! | AGGGATTTTGGATGACAGTT+GGG | + | chr8.4:22867750-22867769 | MS.gene060871:intron | 40.0% |
| ! | GATCCAAAGCACTTTCCAAA+AGG | - | chr8.4:22866688-22866707 | None:intergenic | 40.0% |
| ! | TAGGGATTTTGGATGACAGT+TGG | + | chr8.4:22867749-22867768 | MS.gene060871:intron | 40.0% |
| !! | GTTAGTGATTAGTCTTGCTG+AGG | + | chr8.4:22868132-22868151 | MS.gene060871:intron | 40.0% |
| !!! | TGTCCTTTTGGAAAGTGCTT+TGG | + | chr8.4:22866682-22866701 | MS.gene060871:intron | 40.0% |
| AAGCCATTGATACACACAGC+GGG | + | chr8.4:22866599-22866618 | MS.gene060871:CDS | 45.0% | |
| ACCCTTGAGACAGAAAATGC+CGG | - | chr8.4:22867342-22867361 | None:intergenic | 45.0% | |
| ACCTGTTTATGATCTTGGGG+GGG | + | chr8.4:22867134-22867153 | MS.gene060871:intron | 45.0% | |
| ATAGCCGGTCCAAGAAAAGA+CGG | - | chr8.4:22866526-22866545 | None:intergenic | 45.0% | |
| GAAGCCATTGATACACACAG+CGG | + | chr8.4:22866598-22866617 | MS.gene060871:CDS | 45.0% | |
| GATACAGTTGCAATTGCGGT+TGG | + | chr8.4:22866883-22866902 | MS.gene060871:intron | 45.0% | |
| TGCCGGAAAGATTTACGTCT+TGG | - | chr8.4:22867325-22867344 | None:intergenic | 45.0% | |
| TTGGATGACAGTTGGGAGTT+GGG | + | chr8.4:22867757-22867776 | MS.gene060871:intron | 45.0% | |
| TTTGGATGACAGTTGGGAGT+TGG | + | chr8.4:22867756-22867775 | MS.gene060871:intron | 45.0% | |
| ! | GATTCCGTCTTTTCTTGGAC+CGG | + | chr8.4:22866519-22866538 | MS.gene060871:CDS | 45.0% |
| ! | TCCGGCATTTTCTGTCTCAA+GGG | + | chr8.4:22867338-22867357 | MS.gene060871:intron | 45.0% |
| ! | TGGGCGGAGATCTTGATTTT+GGG | + | chr8.4:22866496-22866515 | MS.gene060871:CDS | 45.0% |
| ! | TTCCGGCATTTTCTGTCTCA+AGG | + | chr8.4:22867337-22867356 | MS.gene060871:intron | 45.0% |
| ! | TTGGGCGGAGATCTTGATTT+TGG | + | chr8.4:22866495-22866514 | MS.gene060871:CDS | 45.0% |
| ! | TTGGGGATTCCGTCTTTTCT+TGG | + | chr8.4:22866514-22866533 | MS.gene060871:CDS | 45.0% |
| !! | GGAAAGTGCTTTGGATCTCA+AGG | + | chr8.4:22866691-22866710 | MS.gene060871:intron | 45.0% |
| ACCCCCCCAAGATCATAAAC+AGG | - | chr8.4:22867138-22867157 | None:intergenic | 50.0% | |
| ATCTCCGCCCAATGTGCATA+AGG | - | chr8.4:22866487-22866506 | None:intergenic | 50.0% | |
| ATGTCAGGTATGACTTCCCC+TGG | + | chr8.4:22868409-22868428 | MS.gene060871:intron | 50.0% | |
| ATGTGACCAGGAACCATAGC+CGG | - | chr8.4:22866541-22866560 | None:intergenic | 50.0% | |
| GTACCCGCTGTGTGTATCAA+TGG | - | chr8.4:22866605-22866624 | None:intergenic | 50.0% | |
| GTTTATGATCTTGGGGGGGT+GGG | + | chr8.4:22867138-22867157 | MS.gene060871:intron | 50.0% | |
| TGCTCAGCGCCACCATAAAA+TGG | - | chr8.4:22868453-22868472 | None:intergenic | 50.0% | |
| TGTTTATGATCTTGGGGGGG+TGG | + | chr8.4:22867137-22867156 | MS.gene060871:intron | 50.0% | |
| TTTATGATCTTGGGGGGGTG+GGG | + | chr8.4:22867139-22867158 | MS.gene060871:intron | 50.0% | |
| ! | GGGCGGAGATCTTGATTTTG+GGG | + | chr8.4:22866497-22866516 | MS.gene060871:CDS | 50.0% |
| ! | GTCTTTTCTTGGACCGGCTA+TGG | + | chr8.4:22866525-22866544 | MS.gene060871:CDS | 50.0% |
| !! | TAAGGCGCCGCAAATCCAAT+TGG | - | chr8.4:22866469-22866488 | None:intergenic | 50.0% |
| GAGGCCGTGCTTATATCTGG+TGG | + | chr8.4:22868151-22868170 | MS.gene060871:intron | 55.0% | |
| GCTGAGGCCGTGCTTATATC+TGG | + | chr8.4:22868148-22868167 | MS.gene060871:intron | 55.0% | |
| TGCGGCGCCTTATGCACATT+GGG | + | chr8.4:22866477-22866496 | MS.gene060871:CDS | 55.0% | |
| TTATGATCTTGGGGGGGTGG+GGG | + | chr8.4:22867140-22867159 | MS.gene060871:intron | 55.0% | |
| TTGCGGCGCCTTATGCACAT+TGG | + | chr8.4:22866476-22866495 | MS.gene060871:CDS | 55.0% | |
| !! | TTCAAGTTGCAAGCACGGCC+TGG | - | chr8.4:22868214-22868233 | None:intergenic | 55.0% |
| ACGGGGTTACCGTTACCGTC+TGG | + | chr8.4:22866313-22866332 | MS.gene060871:CDS | 60.0% | |
| CTTGGACCGGCTATGGTTCC+TGG | + | chr8.4:22866532-22866551 | MS.gene060871:CDS | 60.0% | |
| GGCGCCTTATGCACATTGGG+CGG | + | chr8.4:22866480-22866499 | MS.gene060871:CDS | 60.0% | |
| TATGATCTTGGGGGGGTGGG+GGG | + | chr8.4:22867141-22867160 | MS.gene060871:intron | 60.0% | |
| ! | GGGGGGGTGGGGGGCTCTGT+TGG | + | chr8.4:22867150-22867169 | MS.gene060871:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 22866298 | 22868700 | 22866298 | ID=MS.gene060871 |
| chr8.4 | mRNA | 22866298 | 22868700 | 22866298 | ID=MS.gene060871.t1;Parent=MS.gene060871 |
| chr8.4 | exon | 22866298 | 22866620 | 22866298 | ID=MS.gene060871.t1.exon1;Parent=MS.gene060871.t1 |
| chr8.4 | CDS | 22866298 | 22866620 | 22866298 | ID=cds.MS.gene060871.t1;Parent=MS.gene060871.t1 |
| chr8.4 | exon | 22868416 | 22868563 | 22868416 | ID=MS.gene060871.t1.exon2;Parent=MS.gene060871.t1 |
| chr8.4 | CDS | 22868416 | 22868563 | 22868416 | ID=cds.MS.gene060871.t1;Parent=MS.gene060871.t1 |
| chr8.4 | exon | 22868668 | 22868700 | 22868668 | ID=MS.gene060871.t1.exon3;Parent=MS.gene060871.t1 |
| chr8.4 | CDS | 22868668 | 22868700 | 22868668 | ID=cds.MS.gene060871.t1;Parent=MS.gene060871.t1 |
| Gene Sequence |
| Protein sequence |
