Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060872.t1 | XP_003608797.1 | 100 | 168 | 0 | 0 | 1 | 168 | 111 | 278 | 4.40E-98 | 367.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060872.t1 | Q8L7W5 | 82.7 | 168 | 29 | 0 | 1 | 168 | 113 | 280 | 1.0e-87 | 323.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060872.t1 | G7JK82 | 100.0 | 168 | 0 | 0 | 1 | 168 | 111 | 278 | 3.2e-98 | 367.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05995 | MS.gene060872 | -0.801537 | 8.59E-49 | -1.69E-46 |
| MS.gene05996 | MS.gene060872 | -0.846722 | 1.82E-59 | -1.69E-46 |
| MS.gene060871 | MS.gene060872 | 0.843363 | 1.47E-58 | -1.69E-46 |
| MS.gene060872 | MS.gene07329 | -0.813935 | 1.99E-51 | -1.69E-46 |
| MS.gene060872 | MS.gene33309 | -0.800472 | 1.42E-48 | -1.69E-46 |
| MS.gene060872 | MS.gene34038 | -0.804002 | 2.66E-49 | -1.69E-46 |
| MS.gene060872 | MS.gene35712 | -0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene060872 | MS.gene62845 | 0.866977 | 1.92E-65 | -1.69E-46 |
| MS.gene060872 | MS.gene63751 | 0.800392 | 1.47E-48 | -1.69E-46 |
| MS.gene060872 | MS.gene71888 | 0.830703 | 2.53E-55 | -1.69E-46 |
| MS.gene060872 | MS.gene72111 | 0.878368 | 2.97E-69 | -1.69E-46 |
| MS.gene060872 | MS.gene88640 | -0.810842 | 9.43E-51 | -1.69E-46 |
| MS.gene060872 | MS.gene91156 | -0.800349 | 1.50E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060872.t1 | MTR_4g102060 | 100.000 | 168 | 0 | 0 | 1 | 168 | 111 | 278 | 1.77e-125 | 355 |
| MS.gene060872.t1 | MTR_7g074900 | 70.659 | 167 | 49 | 0 | 2 | 168 | 112 | 278 | 3.91e-92 | 270 |
| MS.gene060872.t1 | MTR_6g039970 | 49.390 | 164 | 83 | 0 | 2 | 165 | 94 | 257 | 1.60e-58 | 184 |
| MS.gene060872.t1 | MTR_5g035190 | 47.904 | 167 | 87 | 0 | 2 | 168 | 40 | 206 | 1.93e-58 | 182 |
| MS.gene060872.t1 | MTR_8g063210 | 48.171 | 164 | 85 | 0 | 2 | 165 | 94 | 257 | 5.41e-58 | 182 |
| MS.gene060872.t1 | MTR_5g035190 | 47.904 | 167 | 87 | 0 | 2 | 168 | 94 | 260 | 1.11e-57 | 181 |
| MS.gene060872.t1 | MTR_5g040320 | 31.788 | 151 | 94 | 4 | 19 | 164 | 101 | 247 | 1.76e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060872.t1 | AT4G12110 | 82.738 | 168 | 29 | 0 | 1 | 168 | 113 | 280 | 1.90e-109 | 314 |
| MS.gene060872.t1 | AT4G22756 | 82.738 | 168 | 29 | 0 | 1 | 168 | 113 | 280 | 6.10e-108 | 310 |
| MS.gene060872.t1 | AT4G22755 | 80.120 | 166 | 33 | 0 | 1 | 166 | 109 | 274 | 4.19e-102 | 295 |
| MS.gene060872.t1 | AT1G07420 | 47.904 | 167 | 87 | 0 | 2 | 168 | 56 | 222 | 1.04e-59 | 185 |
| MS.gene060872.t1 | AT2G29390 | 47.590 | 166 | 87 | 0 | 2 | 167 | 11 | 176 | 2.20e-59 | 182 |
| MS.gene060872.t1 | AT2G29390 | 47.590 | 166 | 87 | 0 | 2 | 167 | 11 | 176 | 2.20e-59 | 182 |
| MS.gene060872.t1 | AT1G07420 | 47.904 | 167 | 87 | 0 | 2 | 168 | 94 | 260 | 3.07e-59 | 185 |
| MS.gene060872.t1 | AT2G29390 | 47.590 | 166 | 87 | 0 | 2 | 167 | 53 | 218 | 4.47e-59 | 183 |
| MS.gene060872.t1 | AT2G29390 | 48.171 | 164 | 85 | 0 | 2 | 165 | 87 | 250 | 9.92e-59 | 184 |
| MS.gene060872.t1 | AT2G29390 | 48.171 | 164 | 85 | 0 | 2 | 165 | 94 | 257 | 1.32e-58 | 183 |
| MS.gene060872.t1 | AT2G29390 | 44.886 | 176 | 85 | 1 | 2 | 165 | 94 | 269 | 3.81e-55 | 175 |
| MS.gene060872.t1 | AT1G14290 | 33.113 | 151 | 92 | 4 | 19 | 164 | 23 | 169 | 9.86e-14 | 66.2 |
| MS.gene060872.t1 | AT1G14290 | 33.113 | 151 | 92 | 4 | 19 | 164 | 97 | 243 | 2.08e-13 | 66.2 |
| MS.gene060872.t1 | AT1G69640 | 30.464 | 151 | 96 | 4 | 19 | 164 | 98 | 244 | 5.66e-11 | 59.7 |
Find 38 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGCGGAGATCTTGATTT+TGG | 0.150585 | 8.4:-22845817 | MS.gene060872:CDS |
| ACATATTGTGATTACATCTA+TGG | 0.218915 | 8.4:-22843781 | MS.gene060872:CDS |
| ATAGATTTCTGCATAATAAA+TGG | 0.221052 | 8.4:-22845911 | MS.gene060872:CDS |
| CTTGGACCGGCTATGGTTCC+TGG | 0.248242 | 8.4:-22845780 | MS.gene060872:CDS |
| TATTGTAGATGATTGGAATT+AGG | 0.278974 | 8.4:-22846022 | None:intergenic |
| ATTTATTATGCAGAAATCTA+TGG | 0.288607 | 8.4:+22845913 | None:intergenic |
| CTGGTCACATGATTACATTT+TGG | 0.315803 | 8.4:-22845761 | MS.gene060872:CDS |
| TGGAGGATTATACGAATTAC+TGG | 0.338989 | 8.4:-22845938 | MS.gene060872:CDS |
| TGCTCAGCGCCACCATAAAA+TGG | 0.348188 | 8.4:+22843862 | None:intergenic |
| TAGATTTCTGCATAATAAAT+GGG | 0.360869 | 8.4:-22845910 | MS.gene060872:CDS |
| TGCGGCGCCTTATGCACATT+GGG | 0.401426 | 8.4:-22845835 | MS.gene060872:CDS |
| CATGAATATCAAGCTCCAAT+TGG | 0.447424 | 8.4:-22845861 | MS.gene060872:CDS |
| ATCTCCGCCCAATGTGCATA+AGG | 0.458453 | 8.4:+22845828 | None:intergenic |
| TAAGGCGCCGCAAATCCAAT+TGG | 0.460635 | 8.4:+22845846 | None:intergenic |
| CACGATTACCATCATTATGT+TGG | 0.470556 | 8.4:-22843838 | MS.gene060872:CDS |
| TTGCGGCGCCTTATGCACAT+TGG | 0.470678 | 8.4:-22845836 | MS.gene060872:CDS |
| TCAAGCTCCAATTGGATTTG+CGG | 0.480625 | 8.4:-22845853 | MS.gene060872:CDS |
| TCAGAAGAAGATACTTCAAA+AGG | 0.505907 | 8.4:-22843633 | None:intergenic |
| ATGTCAGGTATGACTTCCCC+TGG | 0.513299 | 8.4:-22843903 | MS.gene060872:intron |
| TAGATGATTGGAATTAGGAC+GGG | 0.513499 | 8.4:-22846017 | MS.gene060872:CDS |
| AAACTGATGCAAAATTGCTC+TGG | 0.537490 | 8.4:+22843806 | None:intergenic |
| GTAGATGATTGGAATTAGGA+CGG | 0.538786 | 8.4:-22846018 | None:intergenic |
| GATTACCATCATTATGTTGG+AGG | 0.541524 | 8.4:-22843835 | MS.gene060872:CDS |
| ATGTGACCAGGAACCATAGC+CGG | 0.548009 | 8.4:+22845774 | None:intergenic |
| ACGGGGTTACCGTTACCGTC+TGG | 0.551559 | 8.4:-22845999 | MS.gene060872:CDS |
| TTTGTCCTCCAACATAATGA+TGG | 0.557552 | 8.4:+22843830 | None:intergenic |
| GTACCCGCTGTGTGTATCAA+TGG | 0.560522 | 8.4:+22845710 | None:intergenic |
| GGCGCCTTATGCACATTGGG+CGG | 0.588545 | 8.4:-22845832 | MS.gene060872:CDS |
| ATCTCAAATCCAGACGGTAA+CGG | 0.597339 | 8.4:+22845990 | None:intergenic |
| GTGTATCAATGGCTTCAACT+TGG | 0.614849 | 8.4:+22845721 | None:intergenic |
| AGATTTCTGCATAATAAATG+GGG | 0.616388 | 8.4:-22845909 | MS.gene060872:CDS |
| CAAAATGTAATCATGTGACC+AGG | 0.621665 | 8.4:+22845762 | None:intergenic |
| AGATGATTGGAATTAGGACG+GGG | 0.631542 | 8.4:-22846016 | MS.gene060872:CDS |
| AAGCCATTGATACACACAGC+GGG | 0.635131 | 8.4:-22845713 | MS.gene060872:intron |
| ATAGCCGGTCCAAGAAAAGA+CGG | 0.640967 | 8.4:+22845789 | None:intergenic |
| GATAATATCTCAAATCCAGA+CGG | 0.645775 | 8.4:+22845984 | None:intergenic |
| TTACATCTATGGAACAGACA+AGG | 0.732719 | 8.4:-22843770 | MS.gene060872:intron |
| GAAGCCATTGATACACACAG+CGG | 0.790862 | 8.4:-22845714 | MS.gene060872:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATCAACAAAAAA+AGG | + | chr8.4:22843980-22843999 | None:intergenic | 10.0% |
| !! | ATAATAAGTTAAATATGAAA+TGG | - | chr8.4:22844932-22844951 | MS.gene060872:intron | 10.0% |
| !! | ATAATACACAAAAAAATCAA+AGG | + | chr8.4:22844125-22844144 | None:intergenic | 15.0% |
| !!! | ACAAAATATATTCCATTTTA+TGG | - | chr8.4:22845774-22845793 | MS.gene060872:CDS | 15.0% |
| !!! | ATAAAATGGAATATATTTTG+TGG | + | chr8.4:22845775-22845794 | None:intergenic | 15.0% |
| !!! | ATAGATTGTCTTATTATATT+TGG | - | chr8.4:22845446-22845465 | MS.gene060872:intron | 15.0% |
| !!! | ATTTAACTTATTATGAGAAA+AGG | + | chr8.4:22844926-22844945 | None:intergenic | 15.0% |
| !!! | TAAAATGGAATATATTTTGT+GGG | + | chr8.4:22845774-22845793 | None:intergenic | 15.0% |
| !!! | TTTAAAATAGTGATTATATC+TGG | - | chr8.4:22845516-22845535 | MS.gene060872:intron | 15.0% |
| !! | AAAAAAATCAAAGGAGTAAA+AGG | + | chr8.4:22844116-22844135 | None:intergenic | 20.0% |
| !! | AAAAATTTGAAGGACAATTT+AGG | - | chr8.4:22845066-22845085 | MS.gene060872:intron | 20.0% |
| !! | AAAATTTGAAGGACAATTTA+GGG | - | chr8.4:22845067-22845086 | MS.gene060872:intron | 20.0% |
| !! | AAACAAAAAAAATGCTAACT+TGG | - | chr8.4:22844955-22844974 | MS.gene060872:intron | 20.0% |
| !! | AAGACACAATAATCTAAATA+CGG | + | chr8.4:22845022-22845041 | None:intergenic | 20.0% |
| !! | ATAGATTTCTGCATAATAAA+TGG | - | chr8.4:22843737-22843756 | MS.gene060872:intron | 20.0% |
| !! | ATATAGTTGAATGTCAAAAA+TGG | - | chr8.4:22845304-22845323 | MS.gene060872:intron | 20.0% |
| !! | ATATCTATCTAATGAAAAAG+AGG | + | chr8.4:22845649-22845668 | None:intergenic | 20.0% |
| !! | ATTTATTATGCAGAAATCTA+TGG | + | chr8.4:22843738-22843757 | None:intergenic | 20.0% |
| !! | CAATTGAATGTAAAAATTGT+AGG | - | chr8.4:22845390-22845409 | MS.gene060872:intron | 20.0% |
| !! | CATTTAAAGACAATTTAAAC+GGG | + | chr8.4:22844991-22845010 | None:intergenic | 20.0% |
| !! | CCATTTAAAGACAATTTAAA+CGG | + | chr8.4:22844992-22845011 | None:intergenic | 20.0% |
| !! | GAATATTAGGTAAAAGATAA+AGG | + | chr8.4:22844845-22844864 | None:intergenic | 20.0% |
| !! | GATTATTAGGAAAAAGATAA+AGG | - | chr8.4:22845228-22845247 | MS.gene060872:intron | 20.0% |
| !! | GTTGAAGAAAAAAAATTTGA+AGG | - | chr8.4:22845056-22845075 | MS.gene060872:intron | 20.0% |
| !! | GTTTCTTAGTAAGATTATTA+GGG | - | chr8.4:22844181-22844200 | MS.gene060872:intron | 20.0% |
| !! | TAGATTTCTGCATAATAAAT+GGG | - | chr8.4:22843738-22843757 | MS.gene060872:intron | 20.0% |
| !! | TATCTATCTAATGAAAAAGA+GGG | + | chr8.4:22845648-22845667 | None:intergenic | 20.0% |
| !! | TGTTTCTTAGTAAGATTATT+AGG | - | chr8.4:22844180-22844199 | MS.gene060872:intron | 20.0% |
| !!! | AAATATATTCCATTTTATGG+TGG | - | chr8.4:22845777-22845796 | MS.gene060872:CDS | 20.0% |
| !!! | ATTATTAGTGTATTTTTTGG+TGG | - | chr8.4:22843690-22843709 | MS.gene060872:intron | 20.0% |
| !!! | CTTTTACCTAATATTCATTT+CGG | - | chr8.4:22844849-22844868 | MS.gene060872:intron | 20.0% |
| !!! | CTTTTTCCTAATAATCATTT+TGG | + | chr8.4:22845224-22845243 | None:intergenic | 20.0% |
| !!! | GCAATTATTAGTGTATTTTT+TGG | - | chr8.4:22843687-22843706 | MS.gene060872:intron | 20.0% |
| ! | AAAATAGTGATTATATCTGG+TGG | - | chr8.4:22845519-22845538 | MS.gene060872:intron | 25.0% |
| ! | AAAGGACCAAAATGATTATT+AGG | - | chr8.4:22845215-22845234 | MS.gene060872:intron | 25.0% |
| ! | AAGCAATCAAACATAAAAGT+TGG | + | chr8.4:22845715-22845734 | None:intergenic | 25.0% |
| ! | ACATATTGTGATTACATCTA+TGG | - | chr8.4:22845867-22845886 | MS.gene060872:CDS | 25.0% |
| ! | AGATTTCTGCATAATAAATG+GGG | - | chr8.4:22843739-22843758 | MS.gene060872:intron | 25.0% |
| ! | AGCAATCAAACATAAAAGTT+GGG | + | chr8.4:22845714-22845733 | None:intergenic | 25.0% |
| ! | AGTCCAATTAAAAATATTCC+TGG | - | chr8.4:22844585-22844604 | MS.gene060872:intron | 25.0% |
| ! | ATCTATCTAATGAAAAAGAG+GGG | + | chr8.4:22845647-22845666 | None:intergenic | 25.0% |
| ! | ATTACTTTATGCTGAAAGTT+CGG | - | chr8.4:22844434-22844453 | MS.gene060872:intron | 25.0% |
| ! | CCGTTTAAATTGTCTTTAAA+TGG | - | chr8.4:22844989-22845008 | MS.gene060872:intron | 25.0% |
| ! | TGTCTGTAGGATTTAATATT+CGG | - | chr8.4:22845590-22845609 | MS.gene060872:intron | 25.0% |
| ! | TTAAGACCGAAATGAATATT+AGG | + | chr8.4:22844858-22844877 | None:intergenic | 25.0% |
| !! | TAGAAACTTTTTACAAGCTT+TGG | - | chr8.4:22844699-22844718 | MS.gene060872:intron | 25.0% |
| !!! | AAAAAATGTTGACTTAGCAA+TGG | + | chr8.4:22845144-22845163 | None:intergenic | 25.0% |
| !!! | ACATTAAGTGTTCTAAAAAG+AGG | + | chr8.4:22844535-22844554 | None:intergenic | 25.0% |
| !!! | TGTCCAGGAATATTTTTAAT+TGG | + | chr8.4:22844591-22844610 | None:intergenic | 25.0% |
| AAAAGGAAAATGACAGAAAG+TGG | + | chr8.4:22843963-22843982 | None:intergenic | 30.0% | |
| AAGAAACCTGTTTATGATCT+TGG | - | chr8.4:22844465-22844484 | MS.gene060872:intron | 30.0% | |
| ACTACAGCATAAACTTTCAA+AGG | + | chr8.4:22844616-22844635 | None:intergenic | 30.0% | |
| AGAAACCTGTTTATGATCTT+GGG | - | chr8.4:22844466-22844485 | MS.gene060872:intron | 30.0% | |
| ATCATGCTGATGTTTATCAA+TGG | + | chr8.4:22845619-22845638 | None:intergenic | 30.0% | |
| ATTACGTCCAATTGTTTGAA+TGG | + | chr8.4:22844411-22844430 | None:intergenic | 30.0% | |
| GATAATATCTCAAATCCAGA+CGG | + | chr8.4:22843667-22843686 | None:intergenic | 30.0% | |
| TAACTGTAGAAGCGAATTAA+AGG | + | chr8.4:22845344-22845363 | None:intergenic | 30.0% | |
| TACTCACTTGGAAAAGATAA+AGG | - | chr8.4:22845197-22845216 | MS.gene060872:intron | 30.0% | |
| TAGAAGCGAATTAAAGGAAT+TGG | + | chr8.4:22845338-22845357 | None:intergenic | 30.0% | |
| TATGTGAATATGAAGTGAGA+TGG | + | chr8.4:22844776-22844795 | None:intergenic | 30.0% | |
| TCATAAACAGGTTTCTTCTA+AGG | + | chr8.4:22844462-22844481 | None:intergenic | 30.0% | |
| TCTATCTAATGAAAAAGAGG+GGG | + | chr8.4:22845646-22845665 | None:intergenic | 30.0% | |
| TGCTTTACTTATCATATGTC+AGG | - | chr8.4:22845730-22845749 | MS.gene060872:CDS | 30.0% | |
| TTAAATCCTACAGACAAGAT+TGG | + | chr8.4:22845586-22845605 | None:intergenic | 30.0% | |
| TTACGTCCAATTGTTTGAAT+GGG | + | chr8.4:22844410-22844429 | None:intergenic | 30.0% | |
| TTCCAAAAGGACATTCATTA+CGG | + | chr8.4:22844011-22844030 | None:intergenic | 30.0% | |
| TTGCAAATCAATTTCACATG+TGG | + | chr8.4:22845959-22845978 | None:intergenic | 30.0% | |
| ! | AATATATTTTGTGGGATTCC+AGG | + | chr8.4:22845766-22845785 | None:intergenic | 30.0% |
| ! | ATATATTTTGTGGGATTCCA+GGG | + | chr8.4:22845765-22845784 | None:intergenic | 30.0% |
| ! | GATCGATTTCGAAAAGATAA+AGG | + | chr8.4:22844894-22844913 | None:intergenic | 30.0% |
| ! | TGGAAACAGAATTTTGTTGA+AGG | - | chr8.4:22844506-22844525 | MS.gene060872:intron | 30.0% |
| !! | TTTGCTTTGTTTATGTCACA+GGG | - | chr8.4:22845983-22846002 | MS.gene060872:CDS | 30.0% |
| !!! | ACATGATTACATTTTGGTTG+TGG | - | chr8.4:22843893-22843912 | MS.gene060872:CDS | 30.0% |
| !!! | ATTAGTGTATTTTTTGGTGG+AGG | - | chr8.4:22843693-22843712 | MS.gene060872:intron | 30.0% |
| !!! | TTTTGCTTTGTTTATGTCAC+AGG | - | chr8.4:22845982-22846001 | MS.gene060872:CDS | 30.0% |
| AAACCTGTTTATGATCTTGG+GGG | - | chr8.4:22844468-22844487 | MS.gene060872:intron | 35.0% | |
| AAACTGATGCAAAATTGCTC+TGG | + | chr8.4:22845845-22845864 | None:intergenic | 35.0% | |
| AAACTTTCAAAGGTTTGTCC+AGG | + | chr8.4:22844606-22844625 | None:intergenic | 35.0% | |
| AAAGGACATTCATTACGGTT+TGG | + | chr8.4:22844006-22844025 | None:intergenic | 35.0% | |
| ACCGACAATAATTCTGCATT+TGG | + | chr8.4:22844384-22844403 | None:intergenic | 35.0% | |
| AGGACAAAAGTTTACTCACT+TGG | - | chr8.4:22845185-22845204 | MS.gene060872:intron | 35.0% | |
| AGTTCATATGCTGTGAGAAA+AGG | - | chr8.4:22845165-22845184 | MS.gene060872:intron | 35.0% | |
| ATCTCAAGGATCTGTAATAG+TGG | - | chr8.4:22844041-22844060 | MS.gene060872:intron | 35.0% | |
| CAAAATGTAATCATGTGACC+AGG | + | chr8.4:22843889-22843908 | None:intergenic | 35.0% | |
| CACGATTACCATCATTATGT+TGG | - | chr8.4:22845810-22845829 | MS.gene060872:CDS | 35.0% | |
| CATGAATATCAAGCTCCAAT+TGG | - | chr8.4:22843787-22843806 | MS.gene060872:CDS | 35.0% | |
| CCAAATTTCAATGCAGAAAC+TGG | + | chr8.4:22845689-22845708 | None:intergenic | 35.0% | |
| CCAGTTTCTGCATTGAAATT+TGG | - | chr8.4:22845686-22845705 | MS.gene060872:intron | 35.0% | |
| GAAACCTGTTTATGATCTTG+GGG | - | chr8.4:22844467-22844486 | MS.gene060872:intron | 35.0% | |
| GACTTAGCAATGGTTGTATA+AGG | + | chr8.4:22845134-22845153 | None:intergenic | 35.0% | |
| GATTACCATCATTATGTTGG+AGG | - | chr8.4:22845813-22845832 | MS.gene060872:CDS | 35.0% | |
| GCCAAATGCAGAATTATTGT+CGG | - | chr8.4:22844380-22844399 | MS.gene060872:intron | 35.0% | |
| TAATTGCCAATCTTGTCTGT+AGG | - | chr8.4:22845577-22845596 | MS.gene060872:intron | 35.0% | |
| TACAAGCAAGGTTGTTAAAG+TGG | + | chr8.4:22844260-22844279 | None:intergenic | 35.0% | |
| TACACACACACTTACACATA+TGG | - | chr8.4:22844802-22844821 | MS.gene060872:intron | 35.0% | |
| TCTCAAGGATCTGTAATAGT+GGG | - | chr8.4:22844042-22844061 | MS.gene060872:intron | 35.0% | |
| TGCATTTGGCTGTAAATTGA+TGG | + | chr8.4:22844370-22844389 | None:intergenic | 35.0% | |
| TGGAGGATTATACGAATTAC+TGG | - | chr8.4:22843710-22843729 | MS.gene060872:intron | 35.0% | |
| TTAACAACCTTGCTTGTATG+AGG | - | chr8.4:22844262-22844281 | MS.gene060872:intron | 35.0% | |
| TTACATCTATGGAACAGACA+AGG | - | chr8.4:22845878-22845897 | MS.gene060872:CDS | 35.0% | |
| TTAGCAATGGTTGTATAAGG+TGG | + | chr8.4:22845131-22845150 | None:intergenic | 35.0% | |
| TTTGTCCTCCAACATAATGA+TGG | + | chr8.4:22845821-22845840 | None:intergenic | 35.0% | |
| ! | AACCGTAATGAATGTCCTTT+TGG | - | chr8.4:22844006-22844025 | MS.gene060872:intron | 35.0% |
| ! | CTGGTCACATGATTACATTT+TGG | - | chr8.4:22843887-22843906 | MS.gene060872:CDS | 35.0% |
| ! | GAAGGACAATTTAGGGATTT+TGG | - | chr8.4:22845074-22845093 | MS.gene060872:intron | 35.0% |
| ! | GATGCTTCAATTTTCTGACA+CGG | - | chr8.4:22844289-22844308 | MS.gene060872:intron | 35.0% |
| ! | TATATTTTGTGGGATTCCAG+GGG | + | chr8.4:22845764-22845783 | None:intergenic | 35.0% |
| ! | TGTTTATGTCACAGGGTTTT+CGG | - | chr8.4:22845990-22846009 | MS.gene060872:CDS | 35.0% |
| !! | TCAAATTCAAGTTGCAAGCA+CGG | + | chr8.4:22845555-22845574 | None:intergenic | 35.0% |
| !!! | GGGTTGCTTTTTGCTTTTAT+GGG | - | chr8.4:22844062-22844081 | MS.gene060872:intron | 35.0% |
| !!! | GGTTGCTTTTTGCTTTTATG+GGG | - | chr8.4:22844063-22844082 | MS.gene060872:intron | 35.0% |
| !!! | TGGGTTGCTTTTTGCTTTTA+TGG | - | chr8.4:22844061-22844080 | MS.gene060872:intron | 35.0% |
| AACCTGTTTATGATCTTGGG+GGG | - | chr8.4:22844469-22844488 | MS.gene060872:intron | 40.0% | |
| AGCTGATACAGTTGCAATTG+CGG | - | chr8.4:22844215-22844234 | MS.gene060872:intron | 40.0% | |
| ATACAGTTGCAATTGCGGTT+GGG | - | chr8.4:22844220-22844239 | MS.gene060872:intron | 40.0% | |
| ATCACAACCTCATACAAGCA+AGG | + | chr8.4:22844272-22844291 | None:intergenic | 40.0% | |
| ATCTCAAATCCAGACGGTAA+CGG | + | chr8.4:22843661-22843680 | None:intergenic | 40.0% | |
| ATGCAGAAACTGGAGAAGAA+TGG | + | chr8.4:22845679-22845698 | None:intergenic | 40.0% | |
| CAATCCACCAGATATAAGCA+CGG | + | chr8.4:22845494-22845513 | None:intergenic | 40.0% | |
| CACCAAGACGTAAATCTTTC+CGG | - | chr8.4:22844656-22844675 | MS.gene060872:intron | 40.0% | |
| GGTTCACCCATTCAAACAAT+TGG | - | chr8.4:22844401-22844420 | MS.gene060872:intron | 40.0% | |
| GTGTATCAATGGCTTCAACT+TGG | + | chr8.4:22843930-22843949 | None:intergenic | 40.0% | |
| TCAAGCTCCAATTGGATTTG+CGG | - | chr8.4:22843795-22843814 | MS.gene060872:CDS | 40.0% | |
| TGCAACTATAGATCTCACTC+AGG | + | chr8.4:22844089-22844108 | None:intergenic | 40.0% | |
| TTATATCTGGTGGAATGTCC+AGG | - | chr8.4:22845529-22845548 | MS.gene060872:intron | 40.0% | |
| ! | AGGGATTTTGGATGACAGTT+GGG | - | chr8.4:22845086-22845105 | MS.gene060872:intron | 40.0% |
| ! | GATCCAAAGCACTTTCCAAA+AGG | + | chr8.4:22844024-22844043 | None:intergenic | 40.0% |
| ! | TAGGGATTTTGGATGACAGT+TGG | - | chr8.4:22845085-22845104 | MS.gene060872:intron | 40.0% |
| !! | GTTAGTGATTAGTCTTGCTG+AGG | - | chr8.4:22845468-22845487 | MS.gene060872:intron | 40.0% |
| !!! | TGTCCTTTTGGAAAGTGCTT+TGG | - | chr8.4:22844018-22844037 | MS.gene060872:intron | 40.0% |
| AAGCCATTGATACACACAGC+GGG | - | chr8.4:22843935-22843954 | MS.gene060872:intron | 45.0% | |
| ACCCTTGAGACAGAAAATGC+CGG | + | chr8.4:22844678-22844697 | None:intergenic | 45.0% | |
| ACCTGTTTATGATCTTGGGG+GGG | - | chr8.4:22844470-22844489 | MS.gene060872:intron | 45.0% | |
| ATAGCCGGTCCAAGAAAAGA+CGG | + | chr8.4:22843862-22843881 | None:intergenic | 45.0% | |
| GAAGCCATTGATACACACAG+CGG | - | chr8.4:22843934-22843953 | MS.gene060872:intron | 45.0% | |
| GATACAGTTGCAATTGCGGT+TGG | - | chr8.4:22844219-22844238 | MS.gene060872:intron | 45.0% | |
| TGCCGGAAAGATTTACGTCT+TGG | + | chr8.4:22844661-22844680 | None:intergenic | 45.0% | |
| TTGGATGACAGTTGGGAGTT+GGG | - | chr8.4:22845093-22845112 | MS.gene060872:intron | 45.0% | |
| TTTGGATGACAGTTGGGAGT+TGG | - | chr8.4:22845092-22845111 | MS.gene060872:intron | 45.0% | |
| ! | GATTCCGTCTTTTCTTGGAC+CGG | - | chr8.4:22843855-22843874 | MS.gene060872:CDS | 45.0% |
| ! | TCCGGCATTTTCTGTCTCAA+GGG | - | chr8.4:22844674-22844693 | MS.gene060872:intron | 45.0% |
| ! | TGGGCGGAGATCTTGATTTT+GGG | - | chr8.4:22843832-22843851 | MS.gene060872:CDS | 45.0% |
| ! | TTCCGGCATTTTCTGTCTCA+AGG | - | chr8.4:22844673-22844692 | MS.gene060872:intron | 45.0% |
| ! | TTGGGCGGAGATCTTGATTT+TGG | - | chr8.4:22843831-22843850 | MS.gene060872:CDS | 45.0% |
| ! | TTGGGGATTCCGTCTTTTCT+TGG | - | chr8.4:22843850-22843869 | MS.gene060872:CDS | 45.0% |
| !! | GGAAAGTGCTTTGGATCTCA+AGG | - | chr8.4:22844027-22844046 | MS.gene060872:intron | 45.0% |
| ACCCCCCCAAGATCATAAAC+AGG | + | chr8.4:22844474-22844493 | None:intergenic | 50.0% | |
| ATCTCCGCCCAATGTGCATA+AGG | + | chr8.4:22843823-22843842 | None:intergenic | 50.0% | |
| ATGTCAGGTATGACTTCCCC+TGG | - | chr8.4:22845745-22845764 | MS.gene060872:CDS | 50.0% | |
| ATGTGACCAGGAACCATAGC+CGG | + | chr8.4:22843877-22843896 | None:intergenic | 50.0% | |
| GTACCCGCTGTGTGTATCAA+TGG | + | chr8.4:22843941-22843960 | None:intergenic | 50.0% | |
| GTTTATGATCTTGGGGGGGT+GGG | - | chr8.4:22844474-22844493 | MS.gene060872:intron | 50.0% | |
| TGCTCAGCGCCACCATAAAA+TGG | + | chr8.4:22845789-22845808 | None:intergenic | 50.0% | |
| TGTTTATGATCTTGGGGGGG+TGG | - | chr8.4:22844473-22844492 | MS.gene060872:intron | 50.0% | |
| TTTATGATCTTGGGGGGGTG+GGG | - | chr8.4:22844475-22844494 | MS.gene060872:intron | 50.0% | |
| ! | GGGCGGAGATCTTGATTTTG+GGG | - | chr8.4:22843833-22843852 | MS.gene060872:CDS | 50.0% |
| ! | GTCTTTTCTTGGACCGGCTA+TGG | - | chr8.4:22843861-22843880 | MS.gene060872:CDS | 50.0% |
| !! | TAAGGCGCCGCAAATCCAAT+TGG | + | chr8.4:22843805-22843824 | None:intergenic | 50.0% |
| GAGGCCGTGCTTATATCTGG+TGG | - | chr8.4:22845487-22845506 | MS.gene060872:intron | 55.0% | |
| GCTGAGGCCGTGCTTATATC+TGG | - | chr8.4:22845484-22845503 | MS.gene060872:intron | 55.0% | |
| TGCGGCGCCTTATGCACATT+GGG | - | chr8.4:22843813-22843832 | MS.gene060872:CDS | 55.0% | |
| TTATGATCTTGGGGGGGTGG+GGG | - | chr8.4:22844476-22844495 | MS.gene060872:intron | 55.0% | |
| TTGCGGCGCCTTATGCACAT+TGG | - | chr8.4:22843812-22843831 | MS.gene060872:CDS | 55.0% | |
| !! | TTCAAGTTGCAAGCACGGCC+TGG | + | chr8.4:22845550-22845569 | None:intergenic | 55.0% |
| ACGGGGTTACCGTTACCGTC+TGG | - | chr8.4:22843649-22843668 | MS.gene060872:intron | 60.0% | |
| CTTGGACCGGCTATGGTTCC+TGG | - | chr8.4:22843868-22843887 | MS.gene060872:CDS | 60.0% | |
| GGCGCCTTATGCACATTGGG+CGG | - | chr8.4:22843816-22843835 | MS.gene060872:CDS | 60.0% | |
| TATGATCTTGGGGGGGTGGG+GGG | - | chr8.4:22844477-22844496 | MS.gene060872:intron | 60.0% | |
| ! | GGGGGGGTGGGGGGCTCTGT+TGG | - | chr8.4:22844486-22844505 | MS.gene060872:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 22843634 | 22846036 | 22843634 | ID=MS.gene060872 |
| chr8.4 | mRNA | 22843634 | 22846036 | 22843634 | ID=MS.gene060872.t1;Parent=MS.gene060872 |
| chr8.4 | exon | 22845714 | 22846036 | 22845714 | ID=MS.gene060872.t1.exon1;Parent=MS.gene060872.t1 |
| chr8.4 | CDS | 22845714 | 22846036 | 22845714 | ID=cds.MS.gene060872.t1;Parent=MS.gene060872.t1 |
| chr8.4 | exon | 22843771 | 22843918 | 22843771 | ID=MS.gene060872.t1.exon2;Parent=MS.gene060872.t1 |
| chr8.4 | CDS | 22843771 | 22843918 | 22843771 | ID=cds.MS.gene060872.t1;Parent=MS.gene060872.t1 |
| chr8.4 | exon | 22843634 | 22843666 | 22843634 | ID=MS.gene060872.t1.exon3;Parent=MS.gene060872.t1 |
| chr8.4 | CDS | 22843634 | 22843666 | 22843634 | ID=cds.MS.gene060872.t1;Parent=MS.gene060872.t1 |
| Gene Sequence |
| Protein sequence |
