Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065136.t1 | XP_013470174.1 | 83.4 | 163 | 24 | 1 | 1 | 163 | 1 | 160 | 2.90E-70 | 274.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065136.t1 | A0A072VQY7 | 83.4 | 163 | 24 | 1 | 1 | 163 | 1 | 160 | 2.1e-70 | 274.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene065136 | -0.824687 | 7.05E-54 | -1.69E-46 |
| MS.gene049341 | MS.gene065136 | -0.837822 | 4.14E-57 | -1.69E-46 |
| MS.gene049703 | MS.gene065136 | 0.822039 | 2.93E-53 | -1.69E-46 |
| MS.gene049887 | MS.gene065136 | -0.849223 | 3.71E-60 | -1.69E-46 |
| MS.gene050277 | MS.gene065136 | -0.833642 | 4.74E-56 | -1.69E-46 |
| MS.gene050586 | MS.gene065136 | -0.827944 | 1.18E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene065136 | -0.80773 | 4.38E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene065136 | -0.841033 | 6.07E-58 | -1.69E-46 |
| MS.gene050815 | MS.gene065136 | -0.829015 | 6.52E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene065136 | -0.840859 | 6.75E-58 | -1.69E-46 |
| MS.gene051245 | MS.gene065136 | -0.81121 | 7.85E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene065136 | -0.805745 | 1.15E-49 | -1.69E-46 |
| MS.gene051577 | MS.gene065136 | -0.826007 | 3.43E-54 | -1.69E-46 |
| MS.gene051746 | MS.gene065136 | -0.812376 | 4.37E-51 | -1.69E-46 |
| MS.gene051748 | MS.gene065136 | -0.807565 | 4.75E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene065136 | -0.810153 | 1.33E-50 | -1.69E-46 |
| MS.gene051850 | MS.gene065136 | -0.822765 | 1.99E-53 | -1.69E-46 |
| MS.gene052133 | MS.gene065136 | -0.835112 | 2.03E-56 | -1.69E-46 |
| MS.gene052302 | MS.gene065136 | -0.81129 | 7.54E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene065136 | -0.803682 | 3.10E-49 | -1.69E-46 |
| MS.gene052397 | MS.gene065136 | -0.827554 | 1.47E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene065136 | -0.849525 | 3.06E-60 | -1.69E-46 |
| MS.gene052732 | MS.gene065136 | -0.816316 | 5.89E-52 | -1.69E-46 |
| MS.gene052856 | MS.gene065136 | -0.813626 | 2.33E-51 | -1.69E-46 |
| MS.gene052858 | MS.gene065136 | -0.800126 | 1.67E-48 | -1.69E-46 |
| MS.gene052860 | MS.gene065136 | -0.800949 | 1.13E-48 | -1.69E-46 |
| MS.gene052947 | MS.gene065136 | -0.817424 | 3.32E-52 | -1.69E-46 |
| MS.gene053132 | MS.gene065136 | -0.811281 | 7.57E-51 | -1.69E-46 |
| MS.gene053174 | MS.gene065136 | -0.809401 | 1.93E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene065136 | -0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene065136 | -0.806444 | 8.20E-50 | -1.69E-46 |
| MS.gene054250 | MS.gene065136 | -0.807854 | 4.12E-50 | -1.69E-46 |
| MS.gene05462 | MS.gene065136 | -0.808655 | 2.78E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene065136 | -0.807615 | 4.64E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene065136 | -0.81584 | 7.52E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene065136 | -0.830541 | 2.77E-55 | -1.69E-46 |
| MS.gene055469 | MS.gene065136 | -0.809063 | 2.28E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene065136 | 0.83742 | 5.25E-57 | -1.69E-46 |
| MS.gene056043 | MS.gene065136 | 0.850418 | 1.72E-60 | -1.69E-46 |
| MS.gene056069 | MS.gene065136 | 0.811022 | 8.62E-51 | -1.69E-46 |
| MS.gene056432 | MS.gene065136 | -0.835667 | 1.47E-56 | -1.69E-46 |
| MS.gene056584 | MS.gene065136 | -0.818613 | 1.79E-52 | -1.69E-46 |
| MS.gene056760 | MS.gene065136 | -0.81293 | 3.31E-51 | -1.69E-46 |
| MS.gene057057 | MS.gene065136 | -0.853821 | 1.85E-61 | -1.69E-46 |
| MS.gene057140 | MS.gene065136 | -0.815639 | 8.34E-52 | -1.69E-46 |
| MS.gene057234 | MS.gene065136 | -0.81009 | 1.37E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene065136 | -0.8069 | 6.57E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene065136 | -0.810251 | 1.26E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene065136 | -0.830395 | 3.01E-55 | -1.69E-46 |
| MS.gene05809 | MS.gene065136 | -0.800618 | 1.32E-48 | -1.69E-46 |
| MS.gene058906 | MS.gene065136 | -0.85998 | 2.84E-63 | -1.69E-46 |
| MS.gene058982 | MS.gene065136 | -0.824926 | 6.20E-54 | -1.69E-46 |
| MS.gene059171 | MS.gene065136 | -0.802683 | 4.99E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene065136 | -0.807132 | 5.87E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene065136 | -0.811839 | 5.73E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene065136 | -0.845536 | 3.82E-59 | -1.69E-46 |
| MS.gene060194 | MS.gene065136 | -0.805158 | 1.53E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene065136 | -0.817234 | 3.66E-52 | -1.69E-46 |
| MS.gene060997 | MS.gene065136 | 0.801319 | 9.52E-49 | -1.69E-46 |
| MS.gene061001 | MS.gene065136 | 0.805694 | 1.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065136.t1 | MTR_1g110760 | 95.092 | 163 | 5 | 1 | 1 | 163 | 1 | 160 | 3.83e-106 | 300 |
| MS.gene065136.t1 | MTR_6g018430 | 46.584 | 161 | 66 | 6 | 4 | 163 | 27 | 168 | 1.05e-34 | 119 |
| MS.gene065136.t1 | MTR_8g104210 | 46.012 | 163 | 67 | 8 | 7 | 163 | 16 | 163 | 5.67e-29 | 104 |
| MS.gene065136.t1 | MTR_8g104210 | 46.012 | 163 | 67 | 8 | 7 | 163 | 25 | 172 | 9.32e-29 | 104 |
| MS.gene065136.t1 | MTR_6g084470 | 45.122 | 164 | 68 | 7 | 5 | 163 | 21 | 167 | 1.64e-25 | 96.3 |
| MS.gene065136.t1 | MTR_1g051170 | 38.931 | 131 | 60 | 4 | 26 | 149 | 31 | 148 | 5.63e-13 | 63.2 |
| MS.gene065136.t1 | MTR_4g087400 | 38.732 | 142 | 58 | 5 | 9 | 149 | 22 | 135 | 1.89e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065136.t1 | AT1G68490 | 59.756 | 164 | 53 | 6 | 4 | 163 | 29 | 183 | 3.89e-49 | 157 |
| MS.gene065136.t1 | AT1G13390 | 52.469 | 162 | 65 | 5 | 4 | 163 | 25 | 176 | 4.72e-42 | 138 |
| MS.gene065136.t1 | AT1G13390 | 52.469 | 162 | 65 | 5 | 4 | 163 | 25 | 176 | 4.72e-42 | 138 |
| MS.gene065136.t1 | AT5G16110 | 50.909 | 165 | 67 | 7 | 4 | 163 | 89 | 244 | 1.87e-35 | 124 |
| MS.gene065136.t1 | AT3G02555 | 46.296 | 162 | 56 | 5 | 5 | 163 | 29 | 162 | 2.09e-27 | 100 |
| MS.gene065136.t1 | AT3G02555 | 46.296 | 162 | 56 | 5 | 5 | 163 | 29 | 162 | 2.09e-27 | 100 |
Find 65 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCGGATTGTTACCAAAAT+TGG | 0.118190 | 1.2:-82058983 | None:intergenic |
| GGATGTGTTCGGGCCAATTT+TGG | 0.234336 | 1.2:+82058970 | MS.gene065136:CDS |
| AGTCCGACACGGCGGGGCTT+AGG | 0.339729 | 1.2:-82058255 | None:intergenic |
| AGTAGCTAACCCACTAATTC+AGG | 0.341828 | 1.2:+82058837 | MS.gene065136:CDS |
| TAATTCAGGATGCTCGATTC+GGG | 0.363565 | 1.2:+82058851 | MS.gene065136:CDS |
| CCTCCCTTCCTTGCAGAAGA+TGG | 0.393816 | 1.2:-82058949 | None:intergenic |
| CTAATTCAGGATGCTCGATT+CGG | 0.401608 | 1.2:+82058850 | MS.gene065136:CDS |
| AGAAGGTGGCAGACCGGATG+GGG | 0.404001 | 1.2:-82058923 | None:intergenic |
| GAGCAGGGATGCTGCAATTA+CGG | 0.410027 | 1.2:-82059044 | None:intergenic |
| CGCCCCTCTCACCGTCGTCA+TGG | 0.419708 | 1.2:+82058887 | MS.gene065136:CDS |
| GTCCGACACGGCGGGGCTTA+GGG | 0.420772 | 1.2:-82058254 | None:intergenic |
| CAAGGAAGGGAGGATGTGTT+CGG | 0.421741 | 1.2:+82058959 | MS.gene065136:CDS |
| GATCCTTCCGGTGGCATCTC+AGG | 0.425952 | 1.2:+82058310 | MS.gene065136:CDS |
| CTCCCTTCCTTGCAGAAGAT+GGG | 0.432493 | 1.2:-82058948 | None:intergenic |
| AAGGATTCGATTGCCTTGAC+AGG | 0.436802 | 1.2:+82059016 | MS.gene065136:CDS |
| TAATTGCAGCATCCCTGCTC+TGG | 0.448656 | 1.2:+82059047 | MS.gene065136:CDS |
| GCCCCTCTCACCGTCGTCAT+GGG | 0.457309 | 1.2:+82058888 | MS.gene065136:CDS |
| GGAGAAGGTGGCAGACCGGA+TGG | 0.458776 | 1.2:-82058925 | None:intergenic |
| CTCATCTGCGTCAAATCCCT+TGG | 0.463633 | 1.2:+82058459 | MS.gene065136:CDS |
| GGTGGCAGACCGGATGGGGC+AGG | 0.466438 | 1.2:-82058919 | None:intergenic |
| TGCCCTAAGCCCCGCCGTGT+CGG | 0.473384 | 1.2:+82058252 | MS.gene065136:CDS |
| CTGTTGTTCTAAGCCAGAGC+AGG | 0.481278 | 1.2:-82059060 | None:intergenic |
| GAGAAGGTGGCAGACCGGAT+GGG | 0.484866 | 1.2:-82058924 | None:intergenic |
| ACTACCCGAGCAGATCCTTC+CGG | 0.494170 | 1.2:+82058298 | MS.gene065136:CDS |
| GTGGTGGTTCCTGCCCCATC+CGG | 0.495940 | 1.2:+82058910 | MS.gene065136:CDS |
| TTGAATCACACGGTTCAACT+TGG | 0.496164 | 1.2:-82058435 | None:intergenic |
| GTTGAGGAGTCCGACACGGC+GGG | 0.496709 | 1.2:-82058262 | None:intergenic |
| CTCACCGTCGTCATGGGTGG+TGG | 0.513742 | 1.2:+82058894 | MS.gene065136:CDS |
| TCTGCTCGGGTAGTCGTTGA+CGG | 0.526759 | 1.2:-82058289 | None:intergenic |
| CCACCCATGACGACGGTGAG+AGG | 0.533000 | 1.2:-82058891 | None:intergenic |
| AATCCGGCGGTGAGAGTCGA+AGG | 0.545936 | 1.2:+82058997 | MS.gene065136:CDS |
| TCCCTTCCTTGCAGAAGATG+GGG | 0.546203 | 1.2:-82058947 | None:intergenic |
| AATCGAGCATCCTGAATTAG+TGG | 0.550154 | 1.2:-82058847 | None:intergenic |
| AGTCGTTGACGGCGAAGTTG+AGG | 0.554697 | 1.2:-82058278 | None:intergenic |
| CACCCATGACGACGGTGAGA+GGG | 0.562391 | 1.2:-82058890 | None:intergenic |
| AAGGAAGGGAGGATGTGTTC+GGG | 0.568345 | 1.2:+82058960 | MS.gene065136:CDS |
| GCCACCGGAAGGATCTGCTC+GGG | 0.575084 | 1.2:-82058302 | None:intergenic |
| TTGGTGAGAATTGTGTCCAA+GGG | 0.586012 | 1.2:-82058475 | None:intergenic |
| CCTCTCACCGTCGTCATGGG+TGG | 0.588491 | 1.2:+82058891 | MS.gene065136:CDS |
| CTTGGTGAGAATTGTGTCCA+AGG | 0.590478 | 1.2:-82058476 | None:intergenic |
| GCAGGATGATGATTGTGATA+CGG | 0.592153 | 1.2:+82058750 | MS.gene065136:intron |
| AGTGGGTTAGCTACTCTGCT+CGG | 0.596257 | 1.2:-82058829 | None:intergenic |
| TGCCACCGGAAGGATCTGCT+CGG | 0.596625 | 1.2:-82058303 | None:intergenic |
| AGGATTCGATTGCCTTGACA+GGG | 0.597575 | 1.2:+82059017 | MS.gene065136:CDS |
| CCATCTTCTGCAAGGAAGGG+AGG | 0.605126 | 1.2:+82058949 | MS.gene065136:CDS |
| CCCTTCCTTGCAGAAGATGG+GGG | 0.610451 | 1.2:-82058946 | None:intergenic |
| ACCCATGACGACGGTGAGAG+GGG | 0.613698 | 1.2:-82058889 | None:intergenic |
| AATCCTTCGACTCTCACCGC+CGG | 0.616188 | 1.2:-82059000 | None:intergenic |
| TTTCGACGAAGGAAGATGAA+CGG | 0.620932 | 1.2:+82058213 | None:intergenic |
| AATTACGGCTGTCCCTGTCA+AGG | 0.629306 | 1.2:-82059029 | None:intergenic |
| ATCGAGCATCCTGAATTAGT+GGG | 0.630666 | 1.2:-82058846 | None:intergenic |
| GGCGGCGACGAGGCTACTGG+AGG | 0.632101 | 1.2:-82058784 | None:intergenic |
| AAATTCACCTGAGATGCCAC+CGG | 0.634810 | 1.2:-82058317 | None:intergenic |
| TCACCTGAGATGCCACCGGA+AGG | 0.642394 | 1.2:-82058313 | None:intergenic |
| CGAAGTTGAGGAGTCCGACA+CGG | 0.647237 | 1.2:-82058266 | None:intergenic |
| GGAACCACCACCCATGACGA+CGG | 0.659927 | 1.2:-82058898 | None:intergenic |
| GCAGATGAGTTTGAATCACA+CGG | 0.662013 | 1.2:-82058445 | None:intergenic |
| TGTTGTTCTAAGCCAGAGCA+GGG | 0.670625 | 1.2:-82059059 | None:intergenic |
| ACCCGAGCAGATCCTTCCGG+TGG | 0.672658 | 1.2:+82058301 | MS.gene065136:CDS |
| AATTCAGGATGCTCGATTCG+GGG | 0.678593 | 1.2:+82058852 | MS.gene065136:CDS |
| AGTTGAGGAGTCCGACACGG+CGG | 0.682882 | 1.2:-82058263 | None:intergenic |
| TTGAGGAGTCCGACACGGCG+GGG | 0.686362 | 1.2:-82058261 | None:intergenic |
| GCGGGGCTTAGGGCAAACGA+CGG | 0.692402 | 1.2:-82058244 | None:intergenic |
| CTTGGACACAATTCTCACCA+AGG | 0.706031 | 1.2:+82058477 | MS.gene065136:CDS |
| GGGTTAGCTACTCTGCTCGG+CGG | 0.725325 | 1.2:-82058826 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCATATAAAATAATAG+AGG | - | chr1.2:82058512-82058531 | None:intergenic | 10.0% |
| !!! | CTATTATTTTATATGAATTT+AGG | + | chr1.2:82058512-82058531 | MS.gene065136:intron | 10.0% |
| !!! | AATTGATCTATTTTTAACAT+TGG | + | chr1.2:82058590-82058609 | MS.gene065136:intron | 15.0% |
| !!! | ATATGAATTTAGGTTAAAAT+TGG | + | chr1.2:82058522-82058541 | MS.gene065136:intron | 15.0% |
| !!! | TTTTCTCTTTTAATTTGCTT+TGG | + | chr1.2:82058362-82058381 | MS.gene065136:intron | 20.0% |
| ! | AATAGAGGAATTATTTACCT+TGG | - | chr1.2:82058497-82058516 | None:intergenic | 25.0% |
| ACACAAAGCAATTCAACAAA+AGG | - | chr1.2:82058686-82058705 | None:intergenic | 30.0% | |
| AATCGAGCATCCTGAATTAG+TGG | - | chr1.2:82058850-82058869 | None:intergenic | 40.0% | |
| AGTAGCTAACCCACTAATTC+AGG | + | chr1.2:82058837-82058856 | MS.gene065136:CDS | 40.0% | |
| ATCGAGCATCCTGAATTAGT+GGG | - | chr1.2:82058849-82058868 | None:intergenic | 40.0% | |
| CTAATTCAGGATGCTCGATT+CGG | + | chr1.2:82058850-82058869 | MS.gene065136:CDS | 40.0% | |
| GCAGATGAGTTTGAATCACA+CGG | - | chr1.2:82058448-82058467 | None:intergenic | 40.0% | |
| GCAGGATGATGATTGTGATA+CGG | + | chr1.2:82058750-82058769 | MS.gene065136:intron | 40.0% | |
| TAATTCAGGATGCTCGATTC+GGG | + | chr1.2:82058851-82058870 | MS.gene065136:CDS | 40.0% | |
| TTGAATCACACGGTTCAACT+TGG | - | chr1.2:82058438-82058457 | None:intergenic | 40.0% | |
| TTGGTGAGAATTGTGTCCAA+GGG | - | chr1.2:82058478-82058497 | None:intergenic | 40.0% | |
| !! | CAATTTTGGTAACAATCCGG+CGG | + | chr1.2:82058984-82059003 | MS.gene065136:CDS | 40.0% |
| !! | GGCCAATTTTGGTAACAATC+CGG | + | chr1.2:82058981-82059000 | MS.gene065136:CDS | 40.0% |
| !! | GTTGTGCTTTTGTGATTTGC+AGG | + | chr1.2:82058732-82058751 | MS.gene065136:intron | 40.0% |
| AAATTCACCTGAGATGCCAC+CGG | - | chr1.2:82058320-82058339 | None:intergenic | 45.0% | |
| AAGGATTCGATTGCCTTGAC+AGG | + | chr1.2:82059016-82059035 | MS.gene065136:CDS | 45.0% | |
| AGGATTCGATTGCCTTGACA+GGG | + | chr1.2:82059017-82059036 | MS.gene065136:CDS | 45.0% | |
| CGCCGGATTGTTACCAAAAT+TGG | - | chr1.2:82058986-82059005 | None:intergenic | 45.0% | |
| CTTGGACACAATTCTCACCA+AGG | + | chr1.2:82058477-82058496 | MS.gene065136:CDS | 45.0% | |
| CTTGGTGAGAATTGTGTCCA+AGG | - | chr1.2:82058479-82058498 | None:intergenic | 45.0% | |
| ! | AATTCAGGATGCTCGATTCG+GGG | + | chr1.2:82058852-82058871 | MS.gene065136:CDS | 45.0% |
| AAGGAAGGGAGGATGTGTTC+GGG | + | chr1.2:82058960-82058979 | MS.gene065136:CDS | 50.0% | |
| AATTACGGCTGTCCCTGTCA+AGG | - | chr1.2:82059032-82059051 | None:intergenic | 50.0% | |
| CAAGGAAGGGAGGATGTGTT+CGG | + | chr1.2:82058959-82058978 | MS.gene065136:CDS | 50.0% | |
| CGGAGACCCACAGAAAAATG+GGG | - | chr1.2:82058809-82058828 | None:intergenic | 50.0% | |
| CTCATCTGCGTCAAATCCCT+TGG | + | chr1.2:82058459-82058478 | MS.gene065136:CDS | 50.0% | |
| CTCCCTTCCTTGCAGAAGAT+GGG | - | chr1.2:82058951-82058970 | None:intergenic | 50.0% | |
| GAGCAGGGATGCTGCAATTA+CGG | - | chr1.2:82059047-82059066 | None:intergenic | 50.0% | |
| GCGGAGACCCACAGAAAAAT+GGG | - | chr1.2:82058810-82058829 | None:intergenic | 50.0% | |
| GGAGACCCACAGAAAAATGG+GGG | - | chr1.2:82058808-82058827 | None:intergenic | 50.0% | |
| TAATTGCAGCATCCCTGCTC+TGG | + | chr1.2:82059047-82059066 | MS.gene065136:CDS | 50.0% | |
| TCCCTTCCTTGCAGAAGATG+GGG | - | chr1.2:82058950-82058969 | None:intergenic | 50.0% | |
| ! | GGATGTGTTCGGGCCAATTT+TGG | + | chr1.2:82058970-82058989 | MS.gene065136:CDS | 50.0% |
| !! | AGTGGGTTAGCTACTCTGCT+CGG | - | chr1.2:82058832-82058851 | None:intergenic | 50.0% |
| AATCCTTCGACTCTCACCGC+CGG | - | chr1.2:82059003-82059022 | None:intergenic | 55.0% | |
| ACTACCCGAGCAGATCCTTC+CGG | + | chr1.2:82058298-82058317 | MS.gene065136:CDS | 55.0% | |
| AGTCGTTGACGGCGAAGTTG+AGG | - | chr1.2:82058281-82058300 | None:intergenic | 55.0% | |
| CCATCTTCTGCAAGGAAGGG+AGG | + | chr1.2:82058949-82058968 | MS.gene065136:CDS | 55.0% | |
| CCCCCATCTTCTGCAAGGAA+GGG | + | chr1.2:82058946-82058965 | MS.gene065136:CDS | 55.0% | |
| CCCTTCCTTGCAGAAGATGG+GGG | - | chr1.2:82058949-82058968 | None:intergenic | 55.0% | |
| CCTCCCTTCCTTGCAGAAGA+TGG | - | chr1.2:82058952-82058971 | None:intergenic | 55.0% | |
| CGAAGTTGAGGAGTCCGACA+CGG | - | chr1.2:82058269-82058288 | None:intergenic | 55.0% | |
| CTTCTCCCCCATCTTCTGCA+AGG | + | chr1.2:82058941-82058960 | MS.gene065136:CDS | 55.0% | |
| CTTGCAGAAGATGGGGGAGA+AGG | - | chr1.2:82058943-82058962 | None:intergenic | 55.0% | |
| GACCCACAGAAAAATGGGGG+CGG | - | chr1.2:82058805-82058824 | None:intergenic | 55.0% | |
| GGCGGAGACCCACAGAAAAA+TGG | - | chr1.2:82058811-82058830 | None:intergenic | 55.0% | |
| TCCCCCATCTTCTGCAAGGA+AGG | + | chr1.2:82058945-82058964 | MS.gene065136:CDS | 55.0% | |
| TCTGCTCGGGTAGTCGTTGA+CGG | - | chr1.2:82058292-82058311 | None:intergenic | 55.0% | |
| AATCCGGCGGTGAGAGTCGA+AGG | + | chr1.2:82058997-82059016 | MS.gene065136:CDS | 60.0% | |
| ACCCATGACGACGGTGAGAG+GGG | - | chr1.2:82058892-82058911 | None:intergenic | 60.0% | |
| AGAAGGTGGCAGACCGGATG+GGG | - | chr1.2:82058926-82058945 | None:intergenic | 60.0% | |
| AGTTGAGGAGTCCGACACGG+CGG | - | chr1.2:82058266-82058285 | None:intergenic | 60.0% | |
| CACCCATGACGACGGTGAGA+GGG | - | chr1.2:82058893-82058912 | None:intergenic | 60.0% | |
| GAGAAGGTGGCAGACCGGAT+GGG | - | chr1.2:82058927-82058946 | None:intergenic | 60.0% | |
| GATCCTTCCGGTGGCATCTC+AGG | + | chr1.2:82058310-82058329 | MS.gene065136:CDS | 60.0% | |
| GCAGAAGATGGGGGAGAAGG+TGG | - | chr1.2:82058940-82058959 | None:intergenic | 60.0% | |
| GGAACCACCACCCATGACGA+CGG | - | chr1.2:82058901-82058920 | None:intergenic | 60.0% | |
| TCACCTGAGATGCCACCGGA+AGG | - | chr1.2:82058316-82058335 | None:intergenic | 60.0% | |
| TGCCACCGGAAGGATCTGCT+CGG | - | chr1.2:82058306-82058325 | None:intergenic | 60.0% | |
| !! | CGCCGCCCCCATTTTTCTGT+GGG | + | chr1.2:82058800-82058819 | MS.gene065136:CDS | 60.0% |
| !! | GGGTTAGCTACTCTGCTCGG+CGG | - | chr1.2:82058829-82058848 | None:intergenic | 60.0% |
| !! | TCGCCGCCCCCATTTTTCTG+TGG | + | chr1.2:82058799-82058818 | MS.gene065136:CDS | 60.0% |
| ACCCGAGCAGATCCTTCCGG+TGG | + | chr1.2:82058301-82058320 | MS.gene065136:CDS | 65.0% | |
| CCACCCATGACGACGGTGAG+AGG | - | chr1.2:82058894-82058913 | None:intergenic | 65.0% | |
| CCTCTCACCGTCGTCATGGG+TGG | + | chr1.2:82058891-82058910 | MS.gene065136:CDS | 65.0% | |
| CTCACCGTCGTCATGGGTGG+TGG | + | chr1.2:82058894-82058913 | MS.gene065136:CDS | 65.0% | |
| GAAAAATGGGGGCGGCGACG+AGG | - | chr1.2:82058797-82058816 | None:intergenic | 65.0% | |
| GCCACCGGAAGGATCTGCTC+GGG | - | chr1.2:82058305-82058324 | None:intergenic | 65.0% | |
| GCCCCTCTCACCGTCGTCAT+GGG | + | chr1.2:82058888-82058907 | MS.gene065136:CDS | 65.0% | |
| GCGGGGCTTAGGGCAAACGA+CGG | - | chr1.2:82058247-82058266 | None:intergenic | 65.0% | |
| GGAGAAGGTGGCAGACCGGA+TGG | - | chr1.2:82058928-82058947 | None:intergenic | 65.0% | |
| GTGGTGGTTCCTGCCCCATC+CGG | + | chr1.2:82058910-82058929 | MS.gene065136:CDS | 65.0% | |
| GTTGAGGAGTCCGACACGGC+GGG | - | chr1.2:82058265-82058284 | None:intergenic | 65.0% | |
| TGGGGGAGAAGGTGGCAGAC+CGG | - | chr1.2:82058932-82058951 | None:intergenic | 65.0% | |
| TTGAGGAGTCCGACACGGCG+GGG | - | chr1.2:82058264-82058283 | None:intergenic | 65.0% | |
| AGTCCGACACGGCGGGGCTT+AGG | - | chr1.2:82058258-82058277 | None:intergenic | 70.0% | |
| CGCCCCTCTCACCGTCGTCA+TGG | + | chr1.2:82058887-82058906 | MS.gene065136:CDS | 70.0% | |
| GTCCGACACGGCGGGGCTTA+GGG | - | chr1.2:82058257-82058276 | None:intergenic | 70.0% | |
| TGCCCTAAGCCCCGCCGTGT+CGG | + | chr1.2:82058252-82058271 | MS.gene065136:CDS | 70.0% | |
| GGCGGCGACGAGGCTACTGG+AGG | - | chr1.2:82058787-82058806 | None:intergenic | 75.0% | |
| GGTGGCAGACCGGATGGGGC+AGG | - | chr1.2:82058922-82058941 | None:intergenic | 75.0% | |
| ! | GGGGGCGGCGACGAGGCTAC+TGG | - | chr1.2:82058790-82058809 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 82058228 | 82059074 | 82058228 | ID=MS.gene065136 |
| chr1.2 | mRNA | 82058228 | 82059074 | 82058228 | ID=MS.gene065136.t1;Parent=MS.gene065136 |
| chr1.2 | exon | 82058228 | 82058331 | 82058228 | ID=MS.gene065136.t1.exon1;Parent=MS.gene065136.t1 |
| chr1.2 | CDS | 82058228 | 82058331 | 82058228 | ID=cds.MS.gene065136.t1;Parent=MS.gene065136.t1 |
| chr1.2 | exon | 82058432 | 82058498 | 82058432 | ID=MS.gene065136.t1.exon2;Parent=MS.gene065136.t1 |
| chr1.2 | CDS | 82058432 | 82058498 | 82058432 | ID=cds.MS.gene065136.t1;Parent=MS.gene065136.t1 |
| chr1.2 | exon | 82058754 | 82059074 | 82058754 | ID=MS.gene065136.t1.exon3;Parent=MS.gene065136.t1 |
| chr1.2 | CDS | 82058754 | 82059074 | 82058754 | ID=cds.MS.gene065136.t1;Parent=MS.gene065136.t1 |
| Gene Sequence |
| Protein sequence |
