Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06166.t1 | RHN43581.1 | 95.9 | 221 | 9 | 0 | 1 | 221 | 1 | 221 | 2.20E-105 | 391.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06166.t1 | O82197 | 77.0 | 217 | 43 | 2 | 6 | 221 | 3 | 213 | 2.3e-79 | 296.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06166.t1 | A0A396GTR7 | 95.9 | 221 | 9 | 0 | 1 | 221 | 1 | 221 | 1.6e-105 | 391.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053340 | MS.gene06166 | 0.812052 | 5.15E-51 | -1.69E-46 |
| MS.gene055603 | MS.gene06166 | 0.828993 | 6.60E-55 | -1.69E-46 |
| MS.gene056986 | MS.gene06166 | 0.815084 | 1.11E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06166.t1 | MTR_8g102020 | 87.783 | 221 | 11 | 1 | 1 | 221 | 1 | 205 | 1.71e-117 | 333 |
| MS.gene06166.t1 | MTR_6g090515 | 77.273 | 220 | 47 | 2 | 5 | 221 | 1 | 220 | 9.19e-97 | 281 |
| MS.gene06166.t1 | MTR_8g102030 | 75.893 | 224 | 49 | 4 | 1 | 221 | 1 | 222 | 2.72e-92 | 270 |
| MS.gene06166.t1 | MTR_1g090490 | 27.397 | 219 | 133 | 8 | 6 | 199 | 1 | 218 | 1.45e-11 | 62.0 |
| MS.gene06166.t1 | MTR_1g090490 | 27.397 | 219 | 133 | 8 | 6 | 199 | 1 | 218 | 1.72e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06166.t1 | AT2G19830 | 76.606 | 218 | 44 | 2 | 5 | 221 | 2 | 213 | 4.64e-103 | 297 |
| MS.gene06166.t1 | AT4G29160 | 75.799 | 219 | 51 | 2 | 5 | 221 | 1 | 219 | 6.08e-93 | 271 |
| MS.gene06166.t1 | AT4G29160 | 75.799 | 219 | 51 | 2 | 5 | 221 | 1 | 219 | 6.08e-93 | 271 |
| MS.gene06166.t1 | AT2G19830 | 78.173 | 197 | 36 | 2 | 26 | 221 | 4 | 194 | 5.70e-92 | 268 |
| MS.gene06166.t1 | AT4G29160 | 76.111 | 180 | 41 | 2 | 44 | 221 | 13 | 192 | 9.52e-80 | 237 |
| MS.gene06166.t1 | AT5G09260 | 27.861 | 201 | 123 | 5 | 14 | 198 | 8 | 202 | 8.95e-11 | 59.7 |
Find 49 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTGTTACCTCGTTTAATT+TGG | 0.150293 | 4.2:+3243593 | None:intergenic |
| ACCATGCTTAACCGACTTCT+TGG | 0.217598 | 4.2:-3243654 | MS.gene06166:CDS |
| TGGGTATGTTGCTGCCCAGC+TGG | 0.279006 | 4.2:+3239824 | None:intergenic |
| TTTCGCCCTCGTGAATTCTT+TGG | 0.289741 | 4.2:+3243163 | None:intergenic |
| GTTTCAAGAGCACTGACTTT+TGG | 0.304284 | 4.2:+3243621 | None:intergenic |
| GCTTGAAATGCTAGAGAAAA+AGG | 0.304501 | 4.2:-3243228 | MS.gene06166:CDS |
| GGAGACAGTGCTACTTAAAA+AGG | 0.305801 | 4.2:-3243207 | MS.gene06166:CDS |
| GCCCCGGTGCATGTCCCAGC+TGG | 0.322693 | 4.2:-3239839 | MS.gene06166:CDS |
| GCCCAGCTGGGACATGCACC+GGG | 0.360165 | 4.2:+3239837 | None:intergenic |
| TGCCCAGCTGGGACATGCAC+CGG | 0.377359 | 4.2:+3239836 | None:intergenic |
| AGATGAATTGGCAAAGTTGC+AGG | 0.389941 | 4.2:-3239771 | MS.gene06166:CDS |
| GGGACATGCACCGGGGCTGC+TGG | 0.392422 | 4.2:+3239845 | None:intergenic |
| AACAGCTGAGGAAGATGAAT+TGG | 0.399058 | 4.2:-3239783 | MS.gene06166:CDS |
| TCATAGTCGGCTGCGCCAAT+TGG | 0.412404 | 4.2:+3240131 | None:intergenic |
| ACGGTTGATGCGTTGAGAAC+TGG | 0.416463 | 4.2:-3240457 | MS.gene06166:CDS |
| AATTCATCTTCCTCAGCTGT+TGG | 0.448508 | 4.2:+3239785 | None:intergenic |
| AGAAAAGATGAGACAGGTTC+AGG | 0.454403 | 4.2:-3240168 | MS.gene06166:CDS |
| GCTGCTGGAGTTGTAATTGT+AGG | 0.468681 | 4.2:+3239860 | None:intergenic |
| AGAGCTAGAGGGTGCTGAGT+TGG | 0.470621 | 4.2:-3239900 | MS.gene06166:CDS |
| GGGTATGTTGCTGCCCAGCT+GGG | 0.476183 | 4.2:+3239825 | None:intergenic |
| GAAGCATTGTCAGCTCCAAT+TGG | 0.479566 | 4.2:-3240146 | MS.gene06166:CDS |
| CCCCGGTGCATGTCCCAGCT+GGG | 0.489366 | 4.2:-3239838 | MS.gene06166:CDS |
| GGCAAAGTTGCAGGCTGAGA+TGG | 0.495235 | 4.2:-3239762 | MS.gene06166:CDS |
| CCAACTGCGTATCCATGATC+AGG | 0.508223 | 4.2:-3242932 | MS.gene06166:intron |
| GATAATGTTGGAAGGAGCTC+AGG | 0.511581 | 4.2:-3240491 | MS.gene06166:CDS |
| TACAATGTTTGAAGAAGAAG+AGG | 0.513826 | 4.2:-3242990 | MS.gene06166:CDS |
| TGTGTTCACACACCTGATCA+TGG | 0.518883 | 4.2:+3242920 | None:intergenic |
| TGATGATGTTGACAATATCA+TGG | 0.524912 | 4.2:-3240210 | MS.gene06166:CDS |
| AGCTCAGGCGACTACAGAAA+CGG | 0.533361 | 4.2:-3240476 | MS.gene06166:CDS |
| GCTGTTGGTTTCACAGACAC+AGG | 0.551462 | 4.2:+3239800 | None:intergenic |
| ACCAAGAAGTCGGTTAAGCA+TGG | 0.554841 | 4.2:+3243653 | None:intergenic |
| AATTACAACTCCAGCAGCCC+CGG | 0.560878 | 4.2:-3239855 | MS.gene06166:CDS |
| TGTGTTGCAGATGATAATGT+TGG | 0.568109 | 4.2:-3240503 | MS.gene06166:intron |
| ACAGACAGAAAAGATGAGAC+AGG | 0.569487 | 4.2:-3240174 | MS.gene06166:CDS |
| AGCAGAACTTGAAGAGCTAG+AGG | 0.569985 | 4.2:-3239912 | MS.gene06166:CDS |
| GTTTAGGTTTACCAAGAAGT+CGG | 0.570677 | 4.2:+3243643 | None:intergenic |
| CCTGATCATGGATACGCAGT+TGG | 0.581942 | 4.2:+3242932 | None:intergenic |
| GAACAGCAAGTAGAGCAGCT+TGG | 0.594879 | 4.2:-3242961 | MS.gene06166:CDS |
| CTGTTGGTTTCACAGACACA+GGG | 0.618062 | 4.2:+3239801 | None:intergenic |
| CCCAGCTGGGACATGCACCG+GGG | 0.635872 | 4.2:+3239838 | None:intergenic |
| GAAGACAACCTCATCATAGT+CGG | 0.638747 | 4.2:+3240118 | None:intergenic |
| TTGGTTTCACAGACACAGGG+TGG | 0.644268 | 4.2:+3239804 | None:intergenic |
| GCAGAACTTGAAGAGCTAGA+GGG | 0.656486 | 4.2:-3239911 | MS.gene06166:CDS |
| GTCTGTGAAACCAACAGCTG+AGG | 0.659706 | 4.2:-3239795 | MS.gene06166:CDS |
| TGGCGCAGCCGACTATGATG+AGG | 0.672515 | 4.2:-3240126 | MS.gene06166:intron |
| TGGTTTCACAGACACAGGGT+GGG | 0.675430 | 4.2:+3239805 | None:intergenic |
| TTGCAGATGATAATGTTGGA+AGG | 0.696003 | 4.2:-3240499 | MS.gene06166:intron |
| AACTATAGCCAAATTAAACG+AGG | 0.707070 | 4.2:-3243601 | MS.gene06166:intron |
| AAAAGCCAAAGAATTCACGA+GGG | 0.766165 | 4.2:-3243168 | MS.gene06166:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAAAGCAAAATAATTT+TGG | - | chr4.2:3241364-3241383 | MS.gene06166:intron | 10.0% |
| !!! | ATTGAATTATTTAAATTTTC+GGG | + | chr4.2:3242380-3242399 | None:intergenic | 10.0% |
| !!! | TATTTTATAAAATTTTGTGT+CGG | - | chr4.2:3242305-3242324 | MS.gene06166:intron | 10.0% |
| !! | ATTAAAAAATTGACGATTAT+AGG | - | chr4.2:3242270-3242289 | MS.gene06166:intron | 15.0% |
| !!! | AATTTTAAAAAACTAAGGTA+CGG | - | chr4.2:3241124-3241143 | MS.gene06166:intron | 15.0% |
| !!! | CTGAATTTATTTTTTATTTC+AGG | - | chr4.2:3243472-3243491 | MS.gene06166:intron | 15.0% |
| !! | AATATTATAATTCTGCTGTT+CGG | - | chr4.2:3241852-3241871 | MS.gene06166:intron | 20.0% |
| !! | ACAAATATGTATATATGGAA+CGG | + | chr4.2:3242063-3242082 | None:intergenic | 20.0% |
| !! | ATAAAATTGTATAATGCCTA+TGG | + | chr4.2:3240027-3240046 | None:intergenic | 20.0% |
| !! | ATTAGACAAATTAAAAGAGA+TGG | - | chr4.2:3242088-3242107 | MS.gene06166:intron | 20.0% |
| !! | TATAGACTTTCAAATTTACA+TGG | - | chr4.2:3242496-3242515 | MS.gene06166:intron | 20.0% |
| !! | TCATTAAAATGAACAAACAA+TGG | + | chr4.2:3240696-3240715 | None:intergenic | 20.0% |
| !!! | AAGTAAAATTCTGAAAAGTA+TGG | + | chr4.2:3241287-3241306 | None:intergenic | 20.0% |
| !!! | AATTATTTAAATTTTCGGGT+GGG | + | chr4.2:3242376-3242395 | None:intergenic | 20.0% |
| !!! | AATTTTTTAATTTTTCCTGG+TGG | + | chr4.2:3242261-3242280 | None:intergenic | 20.0% |
| !!! | ATTTTAAAAAACTAAGGTAC+GGG | - | chr4.2:3241125-3241144 | MS.gene06166:intron | 20.0% |
| !!! | ATTTTGAATGTTTTGTTTCT+TGG | - | chr4.2:3240155-3240174 | MS.gene06166:CDS | 20.0% |
| !!! | ATTTTTTAATTTTTCCTGGT+GGG | + | chr4.2:3242260-3242279 | None:intergenic | 20.0% |
| !!! | GTCAATTTTTTAATTTTTCC+TGG | + | chr4.2:3242264-3242283 | None:intergenic | 20.0% |
| !!! | TATTTTTATACAATATACCC+AGG | - | chr4.2:3243442-3243461 | MS.gene06166:intron | 20.0% |
| !!! | TGTTTAAAATAAAGATGAGA+TGG | + | chr4.2:3240830-3240849 | None:intergenic | 20.0% |
| !!! | TTTACTATTTTCTCTATTGT+GGG | - | chr4.2:3241522-3241541 | MS.gene06166:intron | 20.0% |
| !!! | TTTTAAAACAAGCATTAAAG+AGG | + | chr4.2:3243081-3243100 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTCAGGATGAAT+TGG | - | chr4.2:3243481-3243500 | MS.gene06166:intron | 20.0% |
| ! | AAAATGAACAAACAATGGTA+TGG | + | chr4.2:3240691-3240710 | None:intergenic | 25.0% |
| ! | AAATTTCAATCTGATTGGAA+GGG | - | chr4.2:3240921-3240940 | MS.gene06166:intron | 25.0% |
| ! | AACTGTTAAAAAGAAAGACT+TGG | - | chr4.2:3240576-3240595 | MS.gene06166:intron | 25.0% |
| ! | AATTTGTGATATGAAAATCC+CGG | + | chr4.2:3241741-3241760 | None:intergenic | 25.0% |
| ! | ACATTAGACAATATAAGCTT+AGG | + | chr4.2:3241581-3241600 | None:intergenic | 25.0% |
| ! | ACTGTTAAAAAGAAAGACTT+GGG | - | chr4.2:3240577-3240596 | MS.gene06166:intron | 25.0% |
| ! | AGTAATAATGAGATTCCTAA+AGG | + | chr4.2:3240347-3240366 | None:intergenic | 25.0% |
| ! | ATGAATATGAAAAGCGAAAT+CGG | + | chr4.2:3239847-3239866 | None:intergenic | 25.0% |
| ! | ATGCATATCTAGATAAAAAG+AGG | + | chr4.2:3241778-3241797 | None:intergenic | 25.0% |
| ! | ATTATGTGACAATAGTTGTT+TGG | + | chr4.2:3242138-3242157 | None:intergenic | 25.0% |
| ! | GTGAGACAAATATGTATATA+TGG | + | chr4.2:3242068-3242087 | None:intergenic | 25.0% |
| ! | GTGGAATCAAAAAAATACTT+TGG | + | chr4.2:3240855-3240874 | None:intergenic | 25.0% |
| ! | TAACAGTTTAATAGCTAGTT+CGG | + | chr4.2:3240564-3240583 | None:intergenic | 25.0% |
| ! | TGTTATAGAGAATACTATTG+TGG | - | chr4.2:3240304-3240323 | MS.gene06166:intron | 25.0% |
| ! | TTGTTCATACAATATTTCTC+AGG | + | chr4.2:3243104-3243123 | None:intergenic | 25.0% |
| ! | TTTAGGAATCTCATTATTAC+TGG | - | chr4.2:3240346-3240365 | MS.gene06166:intron | 25.0% |
| !! | CTTTACTATTTTCTCTATTG+TGG | - | chr4.2:3241521-3241540 | MS.gene06166:intron | 25.0% |
| !!! | ATTGGAAATTTTAGTGTGTA+TGG | + | chr4.2:3241487-3241506 | None:intergenic | 25.0% |
| !!! | CGGCAAATTTTAAAAAACTA+AGG | - | chr4.2:3241119-3241138 | MS.gene06166:intron | 25.0% |
| !!! | GAATTATTTAAATTTTCGGG+TGG | + | chr4.2:3242377-3242396 | None:intergenic | 25.0% |
| !!! | TAAAATTTTGTGTCGGTTTA+TGG | - | chr4.2:3242312-3242331 | MS.gene06166:intron | 25.0% |
| !!! | TGTTCATTTTAATGAAAGAG+TGG | - | chr4.2:3240701-3240720 | MS.gene06166:intron | 25.0% |
| AAAGATGAGATGGAATGAAA+AGG | + | chr4.2:3240820-3240839 | None:intergenic | 30.0% | |
| AAAGTCTCATCTTAAGTGAT+TGG | + | chr4.2:3241505-3241524 | None:intergenic | 30.0% | |
| AACTATAGCCAAATTAAACG+AGG | - | chr4.2:3239816-3239835 | MS.gene06166:CDS | 30.0% | |
| AATAATGAGATTCCTAAAGG+AGG | + | chr4.2:3240344-3240363 | None:intergenic | 30.0% | |
| AATCTCATTATTACTGGAGT+TGG | - | chr4.2:3240352-3240371 | MS.gene06166:intron | 30.0% | |
| AATTTCAATCTGATTGGAAG+GGG | - | chr4.2:3240922-3240941 | MS.gene06166:intron | 30.0% | |
| ACTTCTTTCTTCTACTTCTA+GGG | + | chr4.2:3242022-3242041 | None:intergenic | 30.0% | |
| CAAATTTCAATCTGATTGGA+AGG | - | chr4.2:3240920-3240939 | MS.gene06166:intron | 30.0% | |
| GAATGGAATGGAATGAAATA+AGG | - | chr4.2:3240657-3240676 | MS.gene06166:intron | 30.0% | |
| GATAAAAAGAGGAATGTTTC+TGG | + | chr4.2:3241767-3241786 | None:intergenic | 30.0% | |
| GTACATCAACAATGAAAGAA+AGG | + | chr4.2:3243044-3243063 | None:intergenic | 30.0% | |
| GTGCAGTAAAAAATTTCATC+AGG | - | chr4.2:3241710-3241729 | MS.gene06166:intron | 30.0% | |
| TACAATACATTTCCTCCTTT+AGG | - | chr4.2:3240329-3240348 | MS.gene06166:intron | 30.0% | |
| TACAATGTTTGAAGAAGAAG+AGG | - | chr4.2:3240427-3240446 | MS.gene06166:CDS | 30.0% | |
| TAGAATAAGATAGACTTGAG+TGG | - | chr4.2:3240635-3240654 | MS.gene06166:intron | 30.0% | |
| TATAATTGACATGTTAGCGA+AGG | - | chr4.2:3242471-3242490 | MS.gene06166:intron | 30.0% | |
| TCAGTTGACAGAACAATATA+CGG | + | chr4.2:3242534-3242553 | None:intergenic | 30.0% | |
| TTATTTACTCTATGCTGAAG+AGG | - | chr4.2:3243345-3243364 | MS.gene06166:intron | 30.0% | |
| TTCATGCTCTTACTCTTAAA+CGG | - | chr4.2:3243154-3243173 | MS.gene06166:CDS | 30.0% | |
| TTTGGATTGATGGAAAATGA+TGG | + | chr4.2:3240884-3240903 | None:intergenic | 30.0% | |
| ! | ATTTTCCATCAATCCAAACA+TGG | - | chr4.2:3240886-3240905 | MS.gene06166:intron | 30.0% |
| ! | CTTTTGATGAAGATAGTAGA+GGG | + | chr4.2:3241322-3241341 | None:intergenic | 30.0% |
| ! | TGATGATGTTGACAATATCA+TGG | - | chr4.2:3243207-3243226 | MS.gene06166:CDS | 30.0% |
| ! | TTATATTTGTTACCGCTAGT+GGG | - | chr4.2:3242838-3242857 | MS.gene06166:intron | 30.0% |
| ! | TTTTGATGAAGATAGTAGAG+GGG | + | chr4.2:3241321-3241340 | None:intergenic | 30.0% |
| !! | AAGAGCATTAAAGAGAAAGT+TGG | + | chr4.2:3241555-3241574 | None:intergenic | 30.0% |
| !! | ACATGTTTTTACAGCAACAA+TGG | + | chr4.2:3241203-3241222 | None:intergenic | 30.0% |
| !! | TTTGATTTTTGCATCCCTTT+CGG | - | chr4.2:3241443-3241462 | MS.gene06166:intron | 30.0% |
| !!! | AAGTTTGGTTTTGGATGAAA+TGG | - | chr4.2:3240771-3240790 | MS.gene06166:intron | 30.0% |
| !!! | AATGTACCTAAGTTTTAGGA+AGG | - | chr4.2:3240107-3240126 | MS.gene06166:intron | 30.0% |
| !!! | AGTTTGGTTTTGGATGAAAT+GGG | - | chr4.2:3240772-3240791 | MS.gene06166:intron | 30.0% |
| !!! | AGTTTTAGGATCAAAACCAT+AGG | - | chr4.2:3240008-3240027 | MS.gene06166:intron | 30.0% |
| !!! | ATTTTCAAGTGTATAACCGT+AGG | - | chr4.2:3240062-3240081 | MS.gene06166:intron | 30.0% |
| !!! | GGCTATTTTTGGATATCTAA+TGG | - | chr4.2:3240598-3240617 | MS.gene06166:intron | 30.0% |
| !!! | TAATGTTTTTAGCGCTGTAA+CGG | - | chr4.2:3241617-3241636 | MS.gene06166:intron | 30.0% |
| !!! | TTAAAAGAGATGGCTAGTTT+TGG | - | chr4.2:3242098-3242117 | MS.gene06166:intron | 30.0% |
| !!! | TTTTAGGAAGGTACTCTTTT+GGG | - | chr4.2:3240119-3240138 | MS.gene06166:intron | 30.0% |
| AAAAAGCCAAAGAATTCACG+AGG | - | chr4.2:3240248-3240267 | MS.gene06166:intron | 35.0% | |
| AAAACTTAGGTACATTGCTC+TGG | + | chr4.2:3240103-3240122 | None:intergenic | 35.0% | |
| AAAAGCCAAAGAATTCACGA+GGG | - | chr4.2:3240249-3240268 | MS.gene06166:intron | 35.0% | |
| AAAATTTCATCAGGCTTGAC+CGG | - | chr4.2:3241719-3241738 | MS.gene06166:intron | 35.0% | |
| AATAAATTCAGTCTGTTGCC+TGG | + | chr4.2:3243463-3243482 | None:intergenic | 35.0% | |
| AGTGAACATTTAGTTGCAAG+GGG | + | chr4.2:3241941-3241960 | None:intergenic | 35.0% | |
| AGTTGACAGAACAATATACG+GGG | + | chr4.2:3242532-3242551 | None:intergenic | 35.0% | |
| ATAAATTCAGTCTGTTGCCT+GGG | + | chr4.2:3243462-3243481 | None:intergenic | 35.0% | |
| ATCTTCATCAAAAGCAAGAG+AGG | - | chr4.2:3241328-3241347 | MS.gene06166:intron | 35.0% | |
| ATTTCAATCTGATTGGAAGG+GGG | - | chr4.2:3240923-3240942 | MS.gene06166:intron | 35.0% | |
| CAAGTACGAAGTTGAAATGA+CGG | + | chr4.2:3242663-3242682 | None:intergenic | 35.0% | |
| CACTTCTTTCTTCTACTTCT+AGG | + | chr4.2:3242023-3242042 | None:intergenic | 35.0% | |
| CAGTTGACAGAACAATATAC+GGG | + | chr4.2:3242533-3242552 | None:intergenic | 35.0% | |
| CCAGAAAAAAAAGTTCAGGT+GGG | + | chr4.2:3242738-3242757 | None:intergenic | 35.0% | |
| CTAATGTTTGCACTCATTCA+TGG | - | chr4.2:3241594-3241613 | MS.gene06166:intron | 35.0% | |
| GAGTGAACATTTAGTTGCAA+GGG | + | chr4.2:3241942-3241961 | None:intergenic | 35.0% | |
| GATTGAAATTTGCAGCCTTA+AGG | + | chr4.2:3240912-3240931 | None:intergenic | 35.0% | |
| GCTGCAAATTTCAATCTGAT+TGG | - | chr4.2:3240916-3240935 | MS.gene06166:intron | 35.0% | |
| GCTTGAAATGCTAGAGAAAA+AGG | - | chr4.2:3240189-3240208 | MS.gene06166:CDS | 35.0% | |
| GTTGTGTGAGAATGAATAGT+GGG | + | chr4.2:3241673-3241692 | None:intergenic | 35.0% | |
| TAAGATAGACTTGAGTGGAA+TGG | - | chr4.2:3240640-3240659 | MS.gene06166:intron | 35.0% | |
| TCATGCTCTTACTCTTAAAC+GGG | - | chr4.2:3243155-3243174 | MS.gene06166:CDS | 35.0% | |
| TCTTCATCAAAAGCAAGAGA+GGG | - | chr4.2:3241329-3241348 | MS.gene06166:intron | 35.0% | |
| TGAGTGAACATTTAGTTGCA+AGG | + | chr4.2:3241943-3241962 | None:intergenic | 35.0% | |
| TGTTGTGTGAGAATGAATAG+TGG | + | chr4.2:3241674-3241693 | None:intergenic | 35.0% | |
| TTAGTGCAGCAAAAACGTAT+GGG | + | chr4.2:3241403-3241422 | None:intergenic | 35.0% | |
| TTTGGATATCTAATGGAGAG+TGG | - | chr4.2:3240605-3240624 | MS.gene06166:intron | 35.0% | |
| ! | AGAGTACCTTCCTAAAACTT+AGG | + | chr4.2:3240116-3240135 | None:intergenic | 35.0% |
| ! | CTTATATTTGTTACCGCTAG+TGG | - | chr4.2:3242837-3242856 | MS.gene06166:intron | 35.0% |
| ! | GAGCAATGTACCTAAGTTTT+AGG | - | chr4.2:3240103-3240122 | MS.gene06166:intron | 35.0% |
| ! | GCTTTTGATGAAGATAGTAG+AGG | + | chr4.2:3241323-3241342 | None:intergenic | 35.0% |
| ! | GTTTAGGTTTACCAAGAAGT+CGG | + | chr4.2:3239777-3239796 | None:intergenic | 35.0% |
| ! | TGAATGCGTGTGAAAGTTTT+AGG | - | chr4.2:3239994-3240013 | MS.gene06166:intron | 35.0% |
| ! | TGGAAAATGATGGAAAGTAG+TGG | + | chr4.2:3240874-3240893 | None:intergenic | 35.0% |
| ! | TGTGTTGCAGATGATAATGT+TGG | - | chr4.2:3242914-3242933 | MS.gene06166:intron | 35.0% |
| ! | TTGCAGATGATAATGTTGGA+AGG | - | chr4.2:3242918-3242937 | MS.gene06166:intron | 35.0% |
| !! | AGAAAGACTTGGGCTATTTT+TGG | - | chr4.2:3240587-3240606 | MS.gene06166:intron | 35.0% |
| !! | TTTGTGTCGGTTTATGGTTT+CGG | - | chr4.2:3242318-3242337 | MS.gene06166:intron | 35.0% |
| !!! | GTTTTAGGAAGGTACTCTTT+TGG | - | chr4.2:3240118-3240137 | MS.gene06166:intron | 35.0% |
| !!! | TGAATTTTTTCCTCACACAG+CGG | - | chr4.2:3240401-3240420 | MS.gene06166:intron | 35.0% |
| !!! | TTTAGGAAGGTACTCTTTTG+GGG | - | chr4.2:3240120-3240139 | MS.gene06166:intron | 35.0% |
| AAATTTCATCAGGCTTGACC+GGG | - | chr4.2:3241720-3241739 | MS.gene06166:intron | 40.0% | |
| AACAGCTGAGGAAGATGAAT+TGG | - | chr4.2:3243634-3243653 | MS.gene06166:CDS | 40.0% | |
| AAGCTATGATGCATAGGTAC+AGG | - | chr4.2:3241064-3241083 | MS.gene06166:intron | 40.0% | |
| AATTCATCTTCCTCAGCTGT+TGG | + | chr4.2:3243635-3243654 | None:intergenic | 40.0% | |
| ACAGACAGAAAAGATGAGAC+AGG | - | chr4.2:3243243-3243262 | MS.gene06166:intron | 40.0% | |
| ACGAGGGCGAAAAATAAAAG+GGG | - | chr4.2:3240265-3240284 | MS.gene06166:intron | 40.0% | |
| AGAAAAGATGAGACAGGTTC+AGG | - | chr4.2:3243249-3243268 | MS.gene06166:intron | 40.0% | |
| AGATGAATTGGCAAAGTTGC+AGG | - | chr4.2:3243646-3243665 | MS.gene06166:CDS | 40.0% | |
| ATAATCATGTTGCCCACTAG+CGG | + | chr4.2:3242853-3242872 | None:intergenic | 40.0% | |
| ATGATGCATAGGTACAGGTA+CGG | - | chr4.2:3241069-3241088 | MS.gene06166:intron | 40.0% | |
| CACGAGGGCGAAAAATAAAA+GGG | - | chr4.2:3240264-3240283 | MS.gene06166:intron | 40.0% | |
| CTCGTGGGTCAATGATATAT+TGG | - | chr4.2:3240375-3240394 | MS.gene06166:intron | 40.0% | |
| GAAGACAACCTCATCATAGT+CGG | + | chr4.2:3243302-3243321 | None:intergenic | 40.0% | |
| GCCAGAAAAAAAAGTTCAGG+TGG | + | chr4.2:3242739-3242758 | None:intergenic | 40.0% | |
| GGAGCCAGAAAAAAAAGTTC+AGG | + | chr4.2:3242742-3242761 | None:intergenic | 40.0% | |
| GTTAGTGCAGCAAAAACGTA+TGG | + | chr4.2:3241404-3241423 | None:intergenic | 40.0% | |
| GTTGACAGAACAATATACGG+GGG | + | chr4.2:3242531-3242550 | None:intergenic | 40.0% | |
| TAAGGCCATGTTTGGATTGA+TGG | + | chr4.2:3240894-3240913 | None:intergenic | 40.0% | |
| TACACCACTTTGCGAGAATT+TGG | + | chr4.2:3242349-3242368 | None:intergenic | 40.0% | |
| TAGACTTGAGTGGAATGGAA+TGG | - | chr4.2:3240645-3240664 | MS.gene06166:intron | 40.0% | |
| TCACGAGGGCGAAAAATAAA+AGG | - | chr4.2:3240263-3240282 | MS.gene06166:intron | 40.0% | |
| TGATCCAAATTCTCGCAAAG+TGG | - | chr4.2:3242342-3242361 | MS.gene06166:intron | 40.0% | |
| TGTGCTAAGCTATGATGCAT+AGG | - | chr4.2:3241058-3241077 | MS.gene06166:intron | 40.0% | |
| ! | ACACAGTTTGACTGGTTCAT+GGG | - | chr4.2:3242772-3242791 | MS.gene06166:intron | 40.0% |
| ! | GTTTTCCGCAGTTTCAAAAG+TGG | - | chr4.2:3242426-3242445 | MS.gene06166:intron | 40.0% |
| ! | TCAATCCAAACATGGCCTTA+AGG | - | chr4.2:3240894-3240913 | MS.gene06166:intron | 40.0% |
| ! | TTGATGGGCAAGGAAAAGTT+TGG | - | chr4.2:3240756-3240775 | MS.gene06166:intron | 40.0% |
| ! | TTTTCCTTGCCCATCAAACA+GGG | + | chr4.2:3240753-3240772 | None:intergenic | 40.0% |
| !! | ACAGTGCTACTTAAAAAGGC+TGG | - | chr4.2:3240214-3240233 | MS.gene06166:CDS | 40.0% |
| !! | ACCGGTATCGGTACTTAATA+CGG | - | chr4.2:3241099-3241118 | MS.gene06166:intron | 40.0% |
| !! | CGGTGTTACCTCGTTTAATT+TGG | + | chr4.2:3239827-3239846 | None:intergenic | 40.0% |
| !! | GGAGACAGTGCTACTTAAAA+AGG | - | chr4.2:3240210-3240229 | MS.gene06166:CDS | 40.0% |
| !! | GGCAAGGAAAAGTTTGGTTT+TGG | - | chr4.2:3240762-3240781 | MS.gene06166:intron | 40.0% |
| !!! | AGAGCACTGACTTTTGGTTT+AGG | + | chr4.2:3239793-3239812 | None:intergenic | 40.0% |
| !!! | CCCACCTGAACTTTTTTTTC+TGG | - | chr4.2:3242735-3242754 | MS.gene06166:intron | 40.0% |
| !!! | GTATGCCACTTTTGAAACTG+CGG | + | chr4.2:3242434-3242453 | None:intergenic | 40.0% |
| !!! | GTTTCAAGAGCACTGACTTT+TGG | + | chr4.2:3239799-3239818 | None:intergenic | 40.0% |
| !!! | TTAGGAAGGTACTCTTTTGG+GGG | - | chr4.2:3240121-3240140 | MS.gene06166:intron | 40.0% |
| ACCAAGAAGTCGGTTAAGCA+TGG | + | chr4.2:3239767-3239786 | None:intergenic | 45.0% | |
| AGCAGAACTTGAAGAGCTAG+AGG | - | chr4.2:3243505-3243524 | MS.gene06166:intron | 45.0% | |
| ATTCTCGCAAAGTGGTGTAG+TGG | - | chr4.2:3242350-3242369 | MS.gene06166:intron | 45.0% | |
| CACTGTTCACACAGTTTGAC+TGG | - | chr4.2:3242764-3242783 | MS.gene06166:intron | 45.0% | |
| CAGTCAAACTGTGTGAACAG+TGG | + | chr4.2:3242766-3242785 | None:intergenic | 45.0% | |
| GATAATGTTGGAAGGAGCTC+AGG | - | chr4.2:3242926-3242945 | MS.gene06166:intron | 45.0% | |
| GCAGAACTTGAAGAGCTAGA+GGG | - | chr4.2:3243506-3243525 | MS.gene06166:intron | 45.0% | |
| GCTACTTAAAAAGGCTGGAG+CGG | - | chr4.2:3240219-3240238 | MS.gene06166:CDS | 45.0% | |
| GCTGCTGGAGTTGTAATTGT+AGG | + | chr4.2:3243560-3243579 | None:intergenic | 45.0% | |
| TCAAACTGTGTGAACAGTGG+CGG | + | chr4.2:3242763-3242782 | None:intergenic | 45.0% | |
| TGTGTTCACACACCTGATCA+TGG | + | chr4.2:3240500-3240519 | None:intergenic | 45.0% | |
| TTCTGCTGTTCGGTATGAGA+TGG | - | chr4.2:3241862-3241881 | MS.gene06166:intron | 45.0% | |
| TTTCCTTGCCCATCAAACAG+GGG | + | chr4.2:3240752-3240771 | None:intergenic | 45.0% | |
| TTTCGCCCTCGTGAATTCTT+TGG | + | chr4.2:3240257-3240276 | None:intergenic | 45.0% | |
| ! | ACCATGCTTAACCGACTTCT+TGG | - | chr4.2:3239763-3239782 | MS.gene06166:CDS | 45.0% |
| ! | CACACAGTTTGACTGGTTCA+TGG | - | chr4.2:3242771-3242790 | MS.gene06166:intron | 45.0% |
| ! | CTTTTCCTTGCCCATCAAAC+AGG | + | chr4.2:3240754-3240773 | None:intergenic | 45.0% |
| !! | AGAGCCATATAAGCACCGAA+AGG | + | chr4.2:3241461-3241480 | None:intergenic | 45.0% |
| !! | CATCCCTTTCGGTGCTTATA+TGG | - | chr4.2:3241454-3241473 | MS.gene06166:intron | 45.0% |
| !! | CATGATTGATTCGCACACAG+TGG | - | chr4.2:3242202-3242221 | MS.gene06166:intron | 45.0% |
| !! | CTGTTGGTTTCACAGACACA+GGG | + | chr4.2:3243619-3243638 | None:intergenic | 45.0% |
| !! | GAAGCATTGTCAGCTCCAAT+TGG | - | chr4.2:3243271-3243290 | MS.gene06166:intron | 45.0% |
| !! | GAGCCATATAAGCACCGAAA+GGG | + | chr4.2:3241460-3241479 | None:intergenic | 45.0% |
| !! | GCCGTATTAAGTACCGATAC+CGG | + | chr4.2:3241103-3241122 | None:intergenic | 45.0% |
| !! | TATTACTGGAGTTGGCTCGT+GGG | - | chr4.2:3240360-3240379 | MS.gene06166:intron | 45.0% |
| !! | TTATTACTGGAGTTGGCTCG+TGG | - | chr4.2:3240359-3240378 | MS.gene06166:intron | 45.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr4.2:3242383-3242402 | MS.gene06166:intron | 5.0% |
| !!! | AATTGAATTATTTAAATTTT+CGG | + | chr4.2:3242381-3242400 | None:intergenic | 5.0% |
| !!! | TATATTATAAATAATTTTAG+TGG | - | chr4.2:3242712-3242731 | MS.gene06166:intron | 5.0% |
| AAGTAGTCTGCCAGTCAGAC+TGG | + | chr4.2:3242820-3242839 | None:intergenic | 50.0% | |
| AATTACAACTCCAGCAGCCC+CGG | - | chr4.2:3243562-3243581 | MS.gene06166:intron | 50.0% | |
| ACATGTCTTCCCAGTCTGAC+TGG | - | chr4.2:3242807-3242826 | MS.gene06166:intron | 50.0% | |
| ACCGTAGGAACAGTATCCAG+AGG | - | chr4.2:3240077-3240096 | MS.gene06166:intron | 50.0% | |
| AGCTCAGGCGACTACAGAAA+CGG | - | chr4.2:3242941-3242960 | MS.gene06166:CDS | 50.0% | |
| AGTAGTCTGCCAGTCAGACT+GGG | + | chr4.2:3242819-3242838 | None:intergenic | 50.0% | |
| CATAGGTACAGGTACGGTAC+GGG | - | chr4.2:3241075-3241094 | MS.gene06166:intron | 50.0% | |
| CATTGTATTGCCGCTGTGTG+AGG | + | chr4.2:3240414-3240433 | None:intergenic | 50.0% | |
| CCAACTGCGTATCCATGATC+AGG | - | chr4.2:3240485-3240504 | MS.gene06166:CDS | 50.0% | |
| CCTGATCATGGATACGCAGT+TGG | + | chr4.2:3240488-3240507 | None:intergenic | 50.0% | |
| GAACAGCAAGTAGAGCAGCT+TGG | - | chr4.2:3240456-3240475 | MS.gene06166:CDS | 50.0% | |
| GCATAGGTACAGGTACGGTA+CGG | - | chr4.2:3241074-3241093 | MS.gene06166:intron | 50.0% | |
| GCCTCTGGATACTGTTCCTA+CGG | + | chr4.2:3240081-3240100 | None:intergenic | 50.0% | |
| GTCTGTGAAACCAACAGCTG+AGG | - | chr4.2:3243622-3243641 | MS.gene06166:CDS | 50.0% | |
| GTGCAGCAAAAACGTATGGG+CGG | + | chr4.2:3241400-3241419 | None:intergenic | 50.0% | |
| TCAATCTGATTGGAAGGGGG+CGG | - | chr4.2:3240926-3240945 | MS.gene06166:intron | 50.0% | |
| TCCAGTCTCCCCTGTTTGAT+GGG | - | chr4.2:3240741-3240760 | MS.gene06166:intron | 50.0% | |
| TGCAGCCTTAAGGCCATGTT+TGG | + | chr4.2:3240902-3240921 | None:intergenic | 50.0% | |
| TGGTTTCACAGACACAGGGT+GGG | + | chr4.2:3243615-3243634 | None:intergenic | 50.0% | |
| TTGGTTTCACAGACACAGGG+TGG | + | chr4.2:3243616-3243635 | None:intergenic | 50.0% | |
| ! | ACGGTTGATGCGTTGAGAAC+TGG | - | chr4.2:3242960-3242979 | MS.gene06166:CDS | 50.0% |
| !! | GATTGATTCGCACACAGTGG+CGG | - | chr4.2:3242205-3242224 | MS.gene06166:intron | 50.0% |
| !! | GCTGTTGGTTTCACAGACAC+AGG | + | chr4.2:3243620-3243639 | None:intergenic | 50.0% |
| !! | TAATTTTTCCTGGTGGGCCG+TGG | + | chr4.2:3242254-3242273 | None:intergenic | 50.0% |
| AGCCCTTAATGGGATGGGGT+GGG | - | chr4.2:3242228-3242247 | MS.gene06166:intron | 55.0% | |
| AGGTACATTGCTCTGGCCTC+TGG | + | chr4.2:3240096-3240115 | None:intergenic | 55.0% | |
| CAGCAAAAACGTATGGGCGG+TGG | + | chr4.2:3241397-3241416 | None:intergenic | 55.0% | |
| CAGGGGAGACTGGAGTAAAC+AGG | + | chr4.2:3240735-3240754 | None:intergenic | 55.0% | |
| CGCGAGTGTCTCAAGTATGC+AGG | + | chr4.2:3241025-3241044 | None:intergenic | 55.0% | |
| CTCCAGTCTCCCCTGTTTGA+TGG | - | chr4.2:3240740-3240759 | MS.gene06166:intron | 55.0% | |
| GGCAAAGTTGCAGGCTGAGA+TGG | - | chr4.2:3243655-3243674 | MS.gene06166:CDS | 55.0% | |
| TACAGGTACGGTACGGGTAC+CGG | - | chr4.2:3241081-3241100 | MS.gene06166:intron | 55.0% | |
| TCATAGTCGGCTGCGCCAAT+TGG | + | chr4.2:3243289-3243308 | None:intergenic | 55.0% | |
| ! | ACAGTGGCGGAGCCCTTAAT+GGG | - | chr4.2:3242218-3242237 | MS.gene06166:intron | 55.0% |
| ! | TCTCCCCTGTTTGATGGGCA+AGG | - | chr4.2:3240746-3240765 | MS.gene06166:intron | 55.0% |
| !! | AGAGCTAGAGGGTGCTGAGT+TGG | - | chr4.2:3243517-3243536 | MS.gene06166:intron | 55.0% |
| !! | TACGGTACGGGTACCGGTAT+CGG | - | chr4.2:3241087-3241106 | MS.gene06166:intron | 55.0% |
| GAGCCCTTAATGGGATGGGG+TGG | - | chr4.2:3242227-3242246 | MS.gene06166:intron | 60.0% | |
| GCCCATCAAACAGGGGAGAC+TGG | + | chr4.2:3240745-3240764 | None:intergenic | 60.0% | |
| GCGGAGCCCTTAATGGGATG+GGG | - | chr4.2:3242224-3242243 | MS.gene06166:intron | 60.0% | |
| GGCCCACCCCATCCCATTAA+GGG | + | chr4.2:3242233-3242252 | None:intergenic | 60.0% | |
| GGCGGAGCCCTTAATGGGAT+GGG | - | chr4.2:3242223-3242242 | MS.gene06166:intron | 60.0% | |
| GGGTATGTTGCTGCCCAGCT+GGG | + | chr4.2:3243595-3243614 | None:intergenic | 60.0% | |
| TAATGGGATGGGGTGGGCCA+CGG | - | chr4.2:3242234-3242253 | MS.gene06166:intron | 60.0% | |
| TGGCCCACCCCATCCCATTA+AGG | + | chr4.2:3242234-3242253 | None:intergenic | 60.0% | |
| TGGCGCAGCCGACTATGATG+AGG | - | chr4.2:3243291-3243310 | MS.gene06166:intron | 60.0% | |
| TGGCGGAGCCCTTAATGGGA+TGG | - | chr4.2:3242222-3242241 | MS.gene06166:intron | 60.0% | |
| TGGGTATGTTGCTGCCCAGC+TGG | + | chr4.2:3243596-3243615 | None:intergenic | 60.0% | |
| ! | CACAGTGGCGGAGCCCTTAA+TGG | - | chr4.2:3242217-3242236 | MS.gene06166:intron | 60.0% |
| TGCCCAGCTGGGACATGCAC+CGG | + | chr4.2:3243584-3243603 | None:intergenic | 65.0% | |
| CCCAGCTGGGACATGCACCG+GGG | + | chr4.2:3243582-3243601 | None:intergenic | 70.0% | |
| CCCCGGTGCATGTCCCAGCT+GGG | - | chr4.2:3243579-3243598 | MS.gene06166:intron | 70.0% | |
| GCCCAGCTGGGACATGCACC+GGG | + | chr4.2:3243583-3243602 | None:intergenic | 70.0% | |
| GCCCCGGTGCATGTCCCAGC+TGG | - | chr4.2:3243578-3243597 | MS.gene06166:intron | 75.0% | |
| GGGACATGCACCGGGGCTGC+TGG | + | chr4.2:3243575-3243594 | None:intergenic | 75.0% | |
| ! | GGGGTGGGCCACGGCCCACC+AGG | - | chr4.2:3242243-3242262 | MS.gene06166:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 3239754 | 3243685 | 3239754 | ID=MS.gene06166 |
| chr4.2 | mRNA | 3239754 | 3243685 | 3239754 | ID=MS.gene06166.t1;Parent=MS.gene06166 |
| chr4.2 | exon | 3243602 | 3243685 | 3243602 | ID=MS.gene06166.t1.exon1;Parent=MS.gene06166.t1 |
| chr4.2 | CDS | 3243602 | 3243685 | 3243602 | ID=cds.MS.gene06166.t1;Parent=MS.gene06166.t1 |
| chr4.2 | exon | 3243153 | 3243252 | 3243153 | ID=MS.gene06166.t1.exon2;Parent=MS.gene06166.t1 |
| chr4.2 | CDS | 3243153 | 3243252 | 3243153 | ID=cds.MS.gene06166.t1;Parent=MS.gene06166.t1 |
| chr4.2 | exon | 3242933 | 3243018 | 3242933 | ID=MS.gene06166.t1.exon3;Parent=MS.gene06166.t1 |
| chr4.2 | CDS | 3242933 | 3243018 | 3242933 | ID=cds.MS.gene06166.t1;Parent=MS.gene06166.t1 |
| chr4.2 | exon | 3240424 | 3240515 | 3240424 | ID=MS.gene06166.t1.exon4;Parent=MS.gene06166.t1 |
| chr4.2 | CDS | 3240424 | 3240515 | 3240424 | ID=cds.MS.gene06166.t1;Parent=MS.gene06166.t1 |
| chr4.2 | exon | 3240127 | 3240238 | 3240127 | ID=MS.gene06166.t1.exon5;Parent=MS.gene06166.t1 |
| chr4.2 | CDS | 3240127 | 3240238 | 3240127 | ID=cds.MS.gene06166.t1;Parent=MS.gene06166.t1 |
| chr4.2 | exon | 3239754 | 3239945 | 3239754 | ID=MS.gene06166.t1.exon6;Parent=MS.gene06166.t1 |
| chr4.2 | CDS | 3239754 | 3239945 | 3239754 | ID=cds.MS.gene06166.t1;Parent=MS.gene06166.t1 |
| Gene Sequence |
| Protein sequence |
