Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061801.t1 | XP_013446781.1 | 93.1 | 305 | 16 | 2 | 1 | 305 | 1 | 300 | 9.30E-163 | 582.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061801.t1 | A0A072TVA7 | 93.1 | 305 | 16 | 2 | 1 | 305 | 1 | 300 | 6.7e-163 | 582.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052413 | MS.gene061801 | 0.806412 | 8.33E-50 | -1.69E-46 |
| MS.gene059517 | MS.gene061801 | 0.836863 | 7.29E-57 | -1.69E-46 |
| MS.gene059529 | MS.gene061801 | 0.80816 | 3.55E-50 | -1.69E-46 |
| MS.gene059530 | MS.gene061801 | 0.802433 | 5.62E-49 | -1.69E-46 |
| MS.gene060315 | MS.gene061801 | 0.80075 | 1.24E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061801.t1 | MTR_8g090055 | 93.115 | 305 | 16 | 2 | 1 | 305 | 1 | 300 | 0.0 | 561 |
| MS.gene061801.t1 | MTR_5g037310 | 38.489 | 278 | 139 | 8 | 5 | 267 | 6 | 266 | 3.45e-53 | 176 |
| MS.gene061801.t1 | MTR_5g037310 | 38.489 | 278 | 139 | 8 | 5 | 267 | 6 | 266 | 3.81e-53 | 176 |
| MS.gene061801.t1 | MTR_4g105550 | 29.286 | 280 | 157 | 12 | 13 | 267 | 12 | 275 | 8.91e-26 | 104 |
| MS.gene061801.t1 | MTR_4g123700 | 28.112 | 249 | 154 | 8 | 31 | 268 | 30 | 264 | 3.94e-22 | 94.4 |
| MS.gene061801.t1 | MTR_4g132450 | 27.985 | 268 | 147 | 11 | 33 | 274 | 36 | 283 | 1.41e-21 | 93.6 |
| MS.gene061801.t1 | MTR_2g023970 | 28.000 | 275 | 150 | 13 | 27 | 274 | 16 | 269 | 3.89e-19 | 86.3 |
| MS.gene061801.t1 | MTR_3g069050 | 27.451 | 255 | 143 | 14 | 39 | 282 | 31 | 254 | 5.70e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061801.t1 | AT1G10380 | 40.964 | 249 | 126 | 6 | 34 | 267 | 28 | 270 | 1.58e-45 | 156 |
| MS.gene061801.t1 | AT1G10380 | 40.964 | 249 | 126 | 6 | 34 | 267 | 28 | 270 | 3.40e-45 | 155 |
| MS.gene061801.t1 | AT3G17350 | 29.304 | 273 | 162 | 10 | 16 | 270 | 12 | 271 | 4.75e-22 | 94.0 |
| MS.gene061801.t1 | AT1G11915 | 29.682 | 283 | 152 | 13 | 7 | 260 | 1 | 265 | 9.50e-22 | 94.0 |
| MS.gene061801.t1 | AT3G17350 | 29.167 | 264 | 157 | 9 | 16 | 262 | 12 | 262 | 1.04e-20 | 90.5 |
| MS.gene061801.t1 | AT5G50290 | 28.000 | 275 | 161 | 12 | 18 | 267 | 4 | 266 | 1.68e-20 | 90.1 |
Find 94 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTACTCATTGGGTTTA+TGG | 0.115730 | 4.3:-10374506 | MS.gene061801:CDS |
| TGAAAGTGGATGAAGATATT+TGG | 0.257191 | 4.3:+10374765 | None:intergenic |
| TTGGCACAGGTCCTGGTTGC+GGG | 0.266168 | 4.3:-10374988 | MS.gene061801:CDS |
| GTGTATGAAATGGAGGTTAT+AGG | 0.283646 | 4.3:+10374881 | None:intergenic |
| CTCACAACTAGTACATTTAG+TGG | 0.331784 | 4.3:+10374439 | None:intergenic |
| ATCAAAACCAAGATTTCCTT+TGG | 0.338876 | 4.3:-10374319 | MS.gene061801:CDS |
| TTTGATGTGCATGTTATGTA+TGG | 0.363083 | 4.3:+10374950 | None:intergenic |
| GTTAAATCAATGCCAAAGTT+TGG | 0.363622 | 4.3:+10374797 | None:intergenic |
| TACATAACATGCACATCAAA+TGG | 0.388250 | 4.3:-10374947 | MS.gene061801:CDS |
| CGGGGAACCTAGACGGCAAA+GGG | 0.391013 | 4.3:-10374598 | MS.gene061801:CDS |
| TTTGGCACAGGTCCTGGTTG+CGG | 0.395015 | 4.3:-10374989 | MS.gene061801:CDS |
| ACACAAACAAATCCACTTCC+TGG | 0.398611 | 4.3:+10374386 | None:intergenic |
| TCAACTCCCCTTTGCCGTCT+AGG | 0.402495 | 4.3:+10374591 | None:intergenic |
| TAGAGTCCCAAAGGAAATCT+TGG | 0.407259 | 4.3:+10374312 | None:intergenic |
| TATCCCTTTGGCACAGGTCC+TGG | 0.410285 | 4.3:-10374995 | MS.gene061801:CDS |
| GATCGTAATTAGAGCAATCA+AGG | 0.418096 | 4.3:+10374339 | None:intergenic |
| CCCTACTGATCCTACTCATT+GGG | 0.420444 | 4.3:-10374513 | MS.gene061801:CDS |
| GTTATGTATGGGTTGAATAG+TGG | 0.421768 | 4.3:+10374962 | None:intergenic |
| GAATGTCTGGAGTTCCATCT+TGG | 0.421862 | 4.3:-10373828 | MS.gene061801:CDS |
| TGTATGAAATGGAGGTTATA+GGG | 0.425846 | 4.3:+10374882 | None:intergenic |
| TGTTGTTGAGGCTGTGGGTG+TGG | 0.432596 | 4.3:+10375060 | None:intergenic |
| TATACACAACATGTGTTAGT+AGG | 0.444066 | 4.3:+10374626 | None:intergenic |
| TATGAACAGTTGGGAATGTC+TGG | 0.453180 | 4.3:-10373841 | MS.gene061801:intron |
| ACCCTACTGATCCTACTCAT+TGG | 0.456155 | 4.3:-10374514 | MS.gene061801:CDS |
| TTTGTTTGTGTTTGTAAAGG+TGG | 0.459550 | 4.3:-10374374 | MS.gene061801:CDS |
| AATGGAGGTTATAGGGTATG+AGG | 0.466527 | 4.3:+10374889 | None:intergenic |
| TCAAAACCAAGATTTCCTTT+GGG | 0.473584 | 4.3:-10374318 | MS.gene061801:CDS |
| TGTTAGTGTTGTTGAGGCTG+TGG | 0.477766 | 4.3:+10375054 | None:intergenic |
| GTCTGGAGTTCCATCTTGGC+TGG | 0.482605 | 4.3:-10373824 | MS.gene061801:CDS |
| ATGCAAACGTCACCAAACTT+TGG | 0.492190 | 4.3:-10374809 | MS.gene061801:CDS |
| ATACAAGTCAAGTATCCCTT+TGG | 0.494214 | 4.3:-10375007 | MS.gene061801:CDS |
| CCGGGGAACCTAGACGGCAA+AGG | 0.496288 | 4.3:-10374599 | MS.gene061801:CDS |
| CACATGTTGTGTATACTCAC+CGG | 0.497181 | 4.3:-10374618 | MS.gene061801:CDS |
| ATCAAAAGAAGTGTCACAAA+TGG | 0.498238 | 4.3:+10374712 | None:intergenic |
| CCTTTGCCGTCTAGGTTCCC+CGG | 0.498477 | 4.3:+10374599 | None:intergenic |
| GTGGAAAGAGGTGGTAGTAG+TGG | 0.501478 | 4.3:+10375118 | None:intergenic |
| TGTGAGTGTGAGAGTGGAAG+TGG | 0.506008 | 4.3:+10374859 | None:intergenic |
| CTAAGATGAGAATCATGAAA+AGG | 0.513752 | 4.3:+10375086 | None:intergenic |
| GGGTGGTGTGAGTGTGAGAG+TGG | 0.515614 | 4.3:+10374853 | None:intergenic |
| GTTAGTGTTGTTGAGGCTGT+GGG | 0.518223 | 4.3:+10375055 | None:intergenic |
| TATACTTCGGTTGTGTCACT+TGG | 0.519729 | 4.3:-10374542 | MS.gene061801:CDS |
| AGTGGAAGTGGTGTATGAAA+TGG | 0.521135 | 4.3:+10374871 | None:intergenic |
| GAAAATGATACCAGCCAAGA+TGG | 0.521207 | 4.3:+10373814 | None:intergenic |
| GGATATGCTCCTCCAGGAAG+TGG | 0.522288 | 4.3:-10374398 | MS.gene061801:CDS |
| AATAGTGGGGACCCGCAACC+AGG | 0.526866 | 4.3:+10374977 | None:intergenic |
| AGTAGTGGTGGTAGTGCCAT+TGG | 0.534426 | 4.3:+10375133 | None:intergenic |
| GGATTTGTTTGTGTTTGTAA+AGG | 0.540887 | 4.3:-10374377 | MS.gene061801:CDS |
| GCAACCAGGACCTGTGCCAA+AGG | 0.541377 | 4.3:+10374991 | None:intergenic |
| GCAAGAGAGGAGGATGAAAG+TGG | 0.545372 | 4.3:+10374751 | None:intergenic |
| GTCAAGTATCCCTTTGGCAC+AGG | 0.545996 | 4.3:-10375001 | MS.gene061801:CDS |
| ACATGTTGTGTATACTCACC+GGG | 0.550531 | 4.3:-10374617 | MS.gene061801:CDS |
| ACCCAATGAGTAGGATCAGT+AGG | 0.552236 | 4.3:+10374512 | None:intergenic |
| TGCCCTCAAGTAGTCTCACT+TGG | 0.552797 | 4.3:-10374665 | MS.gene061801:CDS |
| GAGAGTAGTGGTGGTGTATG+TGG | 0.555000 | 4.3:-10374419 | MS.gene061801:CDS |
| TACTCATTGGGTTTATGGAG+TGG | 0.555908 | 4.3:-10374501 | MS.gene061801:CDS |
| CATGAAAAGGTTGATGAGGG+TGG | 0.559660 | 4.3:+10375099 | None:intergenic |
| CAACCAGGACCTGTGCCAAA+GGG | 0.563262 | 4.3:+10374992 | None:intergenic |
| TTGATGTGCATGTTATGTAT+GGG | 0.566236 | 4.3:+10374951 | None:intergenic |
| TTATGTATGGGTTGAATAGT+GGG | 0.567840 | 4.3:+10374963 | None:intergenic |
| CATTATCATCCGATTACACT+AGG | 0.569260 | 4.3:+10373789 | None:intergenic |
| GGAAGTGGTGTATGAAATGG+AGG | 0.572115 | 4.3:+10374874 | None:intergenic |
| AAAGTTTGGTGACGTTTGCA+TGG | 0.574117 | 4.3:+10374811 | None:intergenic |
| GAAAGAGGTGGTAGTAGTGG+TGG | 0.574477 | 4.3:+10375121 | None:intergenic |
| CCCAATGAGTAGGATCAGTA+GGG | 0.577746 | 4.3:+10374513 | None:intergenic |
| GTATGTGGATATGCTCCTCC+AGG | 0.583052 | 4.3:-10374404 | MS.gene061801:CDS |
| GAGGAGAGATAGAGTCCCAA+AGG | 0.583741 | 4.3:+10374303 | None:intergenic |
| TGATTGTAGTGGTTATACTT+CGG | 0.584725 | 4.3:-10374555 | MS.gene061801:CDS |
| GGTGGTGCAAGTAGACATGT+AGG | 0.584778 | 4.3:+10374832 | None:intergenic |
| AGGTTGATGAGGGTGGAAAG+AGG | 0.585956 | 4.3:+10375106 | None:intergenic |
| GCACACTGTTAGTGTTGTTG+AGG | 0.594642 | 4.3:+10375048 | None:intergenic |
| TACCAAGTGAGACTACTTGA+GGG | 0.596440 | 4.3:+10374663 | None:intergenic |
| ATACCAAGTGAGACTACTTG+AGG | 0.598463 | 4.3:+10374662 | None:intergenic |
| CTTAGAGAGAATGATTGTAG+TGG | 0.610496 | 4.3:-10374566 | MS.gene061801:CDS |
| GTGGATGAAGATATTTGGAA+TGG | 0.613981 | 4.3:+10374770 | None:intergenic |
| TACTCACCGGGGAACCTAGA+CGG | 0.615280 | 4.3:-10374605 | MS.gene061801:CDS |
| AACATACTGTTGTACATGGG+AGG | 0.621855 | 4.3:+10374281 | None:intergenic |
| ACTCCATAAACCCAATGAGT+AGG | 0.626290 | 4.3:+10374503 | None:intergenic |
| GAATCATGAAAAGGTTGATG+AGG | 0.631423 | 4.3:+10375095 | None:intergenic |
| TTGATGAGGGTGGAAAGAGG+TGG | 0.635922 | 4.3:+10375109 | None:intergenic |
| ATACTGTTGTACATGGGAGG+AGG | 0.638228 | 4.3:+10374284 | None:intergenic |
| AATCATGAAAAGGTTGATGA+GGG | 0.650509 | 4.3:+10375096 | None:intergenic |
| AAGAGTAAAGAGAAGCACAA+AGG | 0.652408 | 4.3:+10374687 | None:intergenic |
| GTTTGGTGACGTTTGCATGG+TGG | 0.670403 | 4.3:+10374814 | None:intergenic |
| GTGGCATTGAAATATACTCA+TGG | 0.674830 | 4.3:-10374482 | MS.gene061801:CDS |
| GTATTGAGCCACATGTGTCA+TGG | 0.676021 | 4.3:+10375026 | None:intergenic |
| GGGGAACCTAGACGGCAAAG+GGG | 0.692978 | 4.3:-10374597 | MS.gene061801:CDS |
| GTGGTGCAAGTAGACATGTA+GGG | 0.696710 | 4.3:+10374833 | None:intergenic |
| ACTAGTTGTGAGAGTAGTGG+TGG | 0.700797 | 4.3:-10374428 | MS.gene061801:CDS |
| TGTACTAGTTGTGAGAGTAG+TGG | 0.707622 | 4.3:-10374431 | MS.gene061801:CDS |
| TATGTATGGGTTGAATAGTG+GGG | 0.729462 | 4.3:+10374964 | None:intergenic |
| GTGCAAGTAGACATGTAGGG+TGG | 0.743146 | 4.3:+10374836 | None:intergenic |
| CATGTTGTGTATACTCACCG+GGG | 0.745636 | 4.3:-10374616 | MS.gene061801:CDS |
| ACAGTGTGCCATGACACATG+TGG | 0.759996 | 4.3:-10375034 | MS.gene061801:CDS |
| CAAACAAATCCACTTCCTGG+AGG | 0.785898 | 4.3:+10374389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAAGTAAGTAATTA+GGG | - | chr4.3:10374785-10374804 | MS.gene061801:CDS | 10.0% |
| !! | TTATATATAAGTAAGTAATT+AGG | - | chr4.3:10374784-10374803 | MS.gene061801:CDS | 10.0% |
| !! | ATATATAAGTAAGTAATTAG+GGG | - | chr4.3:10374786-10374805 | MS.gene061801:CDS | 15.0% |
| !!! | GTCTTTTTTAATTTTCATAC+AGG | - | chr4.3:10374752-10374771 | MS.gene061801:CDS | 20.0% |
| ! | AAAAACATACTGTTGTACAT+GGG | + | chr4.3:10374657-10374676 | None:intergenic | 25.0% |
| ! | AAAAAGGAAAAATAGATGGT+TGG | - | chr4.3:10374881-10374900 | MS.gene061801:CDS | 25.0% |
| ! | AAAACAATATGCCAAAGTAA+TGG | - | chr4.3:10374946-10374965 | MS.gene061801:CDS | 25.0% |
| ! | AAACAATATGCCAAAGTAAT+GGG | - | chr4.3:10374947-10374966 | MS.gene061801:CDS | 25.0% |
| ! | AAAGAAACAACAAAAAGAGA+AGG | + | chr4.3:10374680-10374699 | None:intergenic | 25.0% |
| ! | ATAATAGTTACCCATTACTT+TGG | + | chr4.3:10374960-10374979 | None:intergenic | 25.0% |
| ! | CAAGAAAAAGGAAAAATAGA+TGG | - | chr4.3:10374877-10374896 | MS.gene061801:CDS | 25.0% |
| ! | TATTATTCTGTACACTTGAA+AGG | - | chr4.3:10374974-10374993 | MS.gene061801:CDS | 25.0% |
| !! | ATTTTCTGAGTACAAGAAAA+AGG | - | chr4.3:10374865-10374884 | MS.gene061801:CDS | 25.0% |
| !!! | AAATGGTTGAACTTTTTTCT+TGG | + | chr4.3:10374206-10374225 | None:intergenic | 25.0% |
| !!! | TTTATATTGATTCTCTCTCT+TGG | - | chr4.3:10375020-10375039 | MS.gene061801:CDS | 25.0% |
| AAAAAAGACCCGAAAACTAT+GGG | + | chr4.3:10374741-10374760 | None:intergenic | 30.0% | |
| ATCAAAACCAAGATTTCCTT+TGG | - | chr4.3:10374613-10374632 | MS.gene061801:CDS | 30.0% | |
| CTAAGATGAGAATCATGAAA+AGG | + | chr4.3:10373849-10373868 | None:intergenic | 30.0% | |
| GAAAAACATACTGTTGTACA+TGG | + | chr4.3:10374658-10374677 | None:intergenic | 30.0% | |
| GAAATGAGTCAAATGACTAT+TGG | - | chr4.3:10374808-10374827 | MS.gene061801:CDS | 30.0% | |
| GTTAAATCAATGCCAAAGTT+TGG | + | chr4.3:10374138-10374157 | None:intergenic | 30.0% | |
| TAAAAAAGACCCGAAAACTA+TGG | + | chr4.3:10374742-10374761 | None:intergenic | 30.0% | |
| TACATAACATGCACATCAAA+TGG | - | chr4.3:10373985-10374004 | MS.gene061801:intron | 30.0% | |
| TATACACAACATGTGTTAGT+AGG | + | chr4.3:10374309-10374328 | None:intergenic | 30.0% | |
| TCAAAACCAAGATTTCCTTT+GGG | - | chr4.3:10374614-10374633 | MS.gene061801:CDS | 30.0% | |
| TGAAAGTGGATGAAGATATT+TGG | + | chr4.3:10374170-10374189 | None:intergenic | 30.0% | |
| TGATTGTAGTGGTTATACTT+CGG | - | chr4.3:10374377-10374396 | MS.gene061801:CDS | 30.0% | |
| TGTATGAAATGGAGGTTATA+GGG | + | chr4.3:10374053-10374072 | None:intergenic | 30.0% | |
| TTGATGTGCATGTTATGTAT+GGG | + | chr4.3:10373984-10374003 | None:intergenic | 30.0% | |
| TTTGATGTGCATGTTATGTA+TGG | + | chr4.3:10373985-10374004 | None:intergenic | 30.0% | |
| TTTGTTTGTGTTTGTAAAGG+TGG | - | chr4.3:10374558-10374577 | MS.gene061801:CDS | 30.0% | |
| ! | GGATTTGTTTGTGTTTGTAA+AGG | - | chr4.3:10374555-10374574 | MS.gene061801:CDS | 30.0% |
| ! | TTATGTATGGGTTGAATAGT+GGG | + | chr4.3:10373972-10373991 | None:intergenic | 30.0% |
| ! | TTTACATTCCCCATAGTTTT+CGG | - | chr4.3:10374729-10374748 | MS.gene061801:CDS | 30.0% |
| !! | AATCATGAAAAGGTTGATGA+GGG | + | chr4.3:10373839-10373858 | None:intergenic | 30.0% |
| !! | ATCAAAAGAAGTGTCACAAA+TGG | + | chr4.3:10374223-10374242 | None:intergenic | 30.0% |
| AAAAAGACCCGAAAACTATG+GGG | + | chr4.3:10374740-10374759 | None:intergenic | 35.0% | |
| AAAAATAGATGGTTGGACGA+TGG | - | chr4.3:10374888-10374907 | MS.gene061801:CDS | 35.0% | |
| ATACAAGTCAAGTATCCCTT+TGG | - | chr4.3:10373925-10373944 | MS.gene061801:intron | 35.0% | |
| CTCACAACTAGTACATTTAG+TGG | + | chr4.3:10374496-10374515 | None:intergenic | 35.0% | |
| CTGTTCTGTTATGAACAGTT+GGG | - | chr4.3:10375082-10375101 | MS.gene061801:CDS | 35.0% | |
| CTTAGAGAGAATGATTGTAG+TGG | - | chr4.3:10374366-10374385 | MS.gene061801:CDS | 35.0% | |
| GATCGTAATTAGAGCAATCA+AGG | + | chr4.3:10374596-10374615 | None:intergenic | 35.0% | |
| GTGGATGAAGATATTTGGAA+TGG | + | chr4.3:10374165-10374184 | None:intergenic | 35.0% | |
| GTGTATGAAATGGAGGTTAT+AGG | + | chr4.3:10374054-10374073 | None:intergenic | 35.0% | |
| GTGTTAGTAGGAGAAAAAAG+AGG | + | chr4.3:10374297-10374316 | None:intergenic | 35.0% | |
| ! | AAGAGTAAAGAGAAGCACAA+AGG | + | chr4.3:10374248-10374267 | None:intergenic | 35.0% |
| ! | GTGGCATTGAAATATACTCA+TGG | - | chr4.3:10374450-10374469 | MS.gene061801:CDS | 35.0% |
| ! | GTTATGTATGGGTTGAATAG+TGG | + | chr4.3:10373973-10373992 | None:intergenic | 35.0% |
| ! | TATGTATGGGTTGAATAGTG+GGG | + | chr4.3:10373971-10373990 | None:intergenic | 35.0% |
| ! | TTACATTCCCCATAGTTTTC+GGG | - | chr4.3:10374730-10374749 | MS.gene061801:CDS | 35.0% |
| !! | GAATCATGAAAAGGTTGATG+AGG | + | chr4.3:10373840-10373859 | None:intergenic | 35.0% |
| !!! | AACTTTTTTCTTGGCAAGAG+AGG | + | chr4.3:10374197-10374216 | None:intergenic | 35.0% |
| AACATACTGTTGTACATGGG+AGG | + | chr4.3:10374654-10374673 | None:intergenic | 40.0% | |
| AATGGAGGTTATAGGGTATG+AGG | + | chr4.3:10374046-10374065 | None:intergenic | 40.0% | |
| ACACAAACAAATCCACTTCC+TGG | + | chr4.3:10374549-10374568 | None:intergenic | 40.0% | |
| ACATGTTGTGTATACTCACC+GGG | - | chr4.3:10374315-10374334 | MS.gene061801:CDS | 40.0% | |
| ACTCCATAAACCCAATGAGT+AGG | + | chr4.3:10374432-10374451 | None:intergenic | 40.0% | |
| AGTGGAAGTGGTGTATGAAA+TGG | + | chr4.3:10374064-10374083 | None:intergenic | 40.0% | |
| ATACCAAGTGAGACTACTTG+AGG | + | chr4.3:10374273-10374292 | None:intergenic | 40.0% | |
| ATGCAAACGTCACCAAACTT+TGG | - | chr4.3:10374123-10374142 | MS.gene061801:intron | 40.0% | |
| CACATGTTGTGTATACTCAC+CGG | - | chr4.3:10374314-10374333 | MS.gene061801:CDS | 40.0% | |
| CCAACTGTTCATAACAGAAC+AGG | + | chr4.3:10375084-10375103 | None:intergenic | 40.0% | |
| CCTGTTCTGTTATGAACAGT+TGG | - | chr4.3:10375081-10375100 | MS.gene061801:CDS | 40.0% | |
| GAAAATGATACCAGCCAAGA+TGG | + | chr4.3:10375121-10375140 | None:intergenic | 40.0% | |
| GATCCTACTCATTGGGTTTA+TGG | - | chr4.3:10374426-10374445 | MS.gene061801:CDS | 40.0% | |
| TACCAAGTGAGACTACTTGA+GGG | + | chr4.3:10374272-10374291 | None:intergenic | 40.0% | |
| TACTCATTGGGTTTATGGAG+TGG | - | chr4.3:10374431-10374450 | MS.gene061801:CDS | 40.0% | |
| TAGAGTCCCAAAGGAAATCT+TGG | + | chr4.3:10374623-10374642 | None:intergenic | 40.0% | |
| TATGAACAGTTGGGAATGTC+TGG | - | chr4.3:10375091-10375110 | MS.gene061801:CDS | 40.0% | |
| TGTACTAGTTGTGAGAGTAG+TGG | - | chr4.3:10374501-10374520 | MS.gene061801:CDS | 40.0% | |
| ! | ATGAGGATGTGTGAGTTTTG+AGG | + | chr4.3:10374029-10374048 | None:intergenic | 40.0% |
| ! | TATACTTCGGTTGTGTCACT+TGG | - | chr4.3:10374390-10374409 | MS.gene061801:CDS | 40.0% |
| !! | AAAGTTTGGTGACGTTTGCA+TGG | + | chr4.3:10374124-10374143 | None:intergenic | 40.0% |
| !!! | TGTGAGTTTTGAGGATGAGT+TGG | + | chr4.3:10374020-10374039 | None:intergenic | 40.0% |
| !!! | TTTTTTCTTGGCAAGAGAGG+AGG | + | chr4.3:10374194-10374213 | None:intergenic | 40.0% |
| ACCCAATGAGTAGGATCAGT+AGG | + | chr4.3:10374423-10374442 | None:intergenic | 45.0% | |
| ACCCTACTGATCCTACTCAT+TGG | - | chr4.3:10374418-10374437 | MS.gene061801:CDS | 45.0% | |
| ACTAGTTGTGAGAGTAGTGG+TGG | - | chr4.3:10374504-10374523 | MS.gene061801:CDS | 45.0% | |
| ATACTGTTGTACATGGGAGG+AGG | + | chr4.3:10374651-10374670 | None:intergenic | 45.0% | |
| CAAACAAATCCACTTCCTGG+AGG | + | chr4.3:10374546-10374565 | None:intergenic | 45.0% | |
| CATGTTGTGTATACTCACCG+GGG | - | chr4.3:10374316-10374335 | MS.gene061801:CDS | 45.0% | |
| CCCAATGAGTAGGATCAGTA+GGG | + | chr4.3:10374422-10374441 | None:intergenic | 45.0% | |
| CCCTACTGATCCTACTCATT+GGG | - | chr4.3:10374419-10374438 | MS.gene061801:CDS | 45.0% | |
| GGAAGTGGTGTATGAAATGG+AGG | + | chr4.3:10374061-10374080 | None:intergenic | 45.0% | |
| GTATTGAGCCACATGTGTCA+TGG | + | chr4.3:10373909-10373928 | None:intergenic | 45.0% | |
| GTGGTGCAAGTAGACATGTA+GGG | + | chr4.3:10374102-10374121 | None:intergenic | 45.0% | |
| ! | GAATGTCTGGAGTTCCATCT+TGG | - | chr4.3:10375104-10375123 | MS.gene061801:CDS | 45.0% |
| ! | GCACACTGTTAGTGTTGTTG+AGG | + | chr4.3:10373887-10373906 | None:intergenic | 45.0% |
| ! | GTTAGTGTTGTTGAGGCTGT+GGG | + | chr4.3:10373880-10373899 | None:intergenic | 45.0% |
| ! | TGTTAGTGTTGTTGAGGCTG+TGG | + | chr4.3:10373881-10373900 | None:intergenic | 45.0% |
| !! | CATGAAAAGGTTGATGAGGG+TGG | + | chr4.3:10373836-10373855 | None:intergenic | 45.0% |
| ACAGTGTGCCATGACACATG+TGG | - | chr4.3:10373898-10373917 | MS.gene061801:intron | 50.0% | |
| GAAAGAGGTGGTAGTAGTGG+TGG | + | chr4.3:10373814-10373833 | None:intergenic | 50.0% | |
| GAGGAGAGATAGAGTCCCAA+AGG | + | chr4.3:10374632-10374651 | None:intergenic | 50.0% | |
| GCAAGAGAGGAGGATGAAAG+TGG | + | chr4.3:10374184-10374203 | None:intergenic | 50.0% | |
| GGTGGTGCAAGTAGACATGT+AGG | + | chr4.3:10374103-10374122 | None:intergenic | 50.0% | |
| GTATGTGGATATGCTCCTCC+AGG | - | chr4.3:10374528-10374547 | MS.gene061801:CDS | 50.0% | |
| GTCAAGTATCCCTTTGGCAC+AGG | - | chr4.3:10373931-10373950 | MS.gene061801:intron | 50.0% | |
| GTGCAAGTAGACATGTAGGG+TGG | + | chr4.3:10374099-10374118 | None:intergenic | 50.0% | |
| GTGGAAAGAGGTGGTAGTAG+TGG | + | chr4.3:10373817-10373836 | None:intergenic | 50.0% | |
| TGCCCTCAAGTAGTCTCACT+TGG | - | chr4.3:10374267-10374286 | MS.gene061801:intron | 50.0% | |
| TGTGAGTGTGAGAGTGGAAG+TGG | + | chr4.3:10374076-10374095 | None:intergenic | 50.0% | |
| TTGATGAGGGTGGAAAGAGG+TGG | + | chr4.3:10373826-10373845 | None:intergenic | 50.0% | |
| ! | GAGAGTAGTGGTGGTGTATG+TGG | - | chr4.3:10374513-10374532 | MS.gene061801:CDS | 50.0% |
| !! | AGGTTGATGAGGGTGGAAAG+AGG | + | chr4.3:10373829-10373848 | None:intergenic | 50.0% |
| !! | GTTTGGTGACGTTTGCATGG+TGG | + | chr4.3:10374121-10374140 | None:intergenic | 50.0% |
| CAACCAGGACCTGTGCCAAA+GGG | + | chr4.3:10373943-10373962 | None:intergenic | 55.0% | |
| GGATATGCTCCTCCAGGAAG+TGG | - | chr4.3:10374534-10374553 | MS.gene061801:CDS | 55.0% | |
| TACTCACCGGGGAACCTAGA+CGG | - | chr4.3:10374327-10374346 | MS.gene061801:CDS | 55.0% | |
| TATCCCTTTGGCACAGGTCC+TGG | - | chr4.3:10373937-10373956 | MS.gene061801:intron | 55.0% | |
| TCAACTCCCCTTTGCCGTCT+AGG | + | chr4.3:10374344-10374363 | None:intergenic | 55.0% | |
| TGTTGTTGAGGCTGTGGGTG+TGG | + | chr4.3:10373875-10373894 | None:intergenic | 55.0% | |
| TTTGGCACAGGTCCTGGTTG+CGG | - | chr4.3:10373943-10373962 | MS.gene061801:intron | 55.0% | |
| ! | GTCTGGAGTTCCATCTTGGC+TGG | - | chr4.3:10375108-10375127 | MS.gene061801:CDS | 55.0% |
| CCTTTGCCGTCTAGGTTCCC+CGG | + | chr4.3:10374336-10374355 | None:intergenic | 60.0% | |
| CGGGGAACCTAGACGGCAAA+GGG | - | chr4.3:10374334-10374353 | MS.gene061801:CDS | 60.0% | |
| GCAACCAGGACCTGTGCCAA+AGG | + | chr4.3:10373944-10373963 | None:intergenic | 60.0% | |
| GGGGAACCTAGACGGCAAAG+GGG | - | chr4.3:10374335-10374354 | MS.gene061801:CDS | 60.0% | |
| GGGTGGTGTGAGTGTGAGAG+TGG | + | chr4.3:10374082-10374101 | None:intergenic | 60.0% | |
| TTGGCACAGGTCCTGGTTGC+GGG | - | chr4.3:10373944-10373963 | MS.gene061801:intron | 60.0% | |
| ! | AATAGTGGGGACCCGCAACC+AGG | + | chr4.3:10373958-10373977 | None:intergenic | 60.0% |
| CCGGGGAACCTAGACGGCAA+AGG | - | chr4.3:10374333-10374352 | MS.gene061801:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 10373802 | 10375152 | 10373802 | ID=MS.gene061801 |
| chr4.3 | mRNA | 10373802 | 10375152 | 10373802 | ID=MS.gene061801.t1;Parent=MS.gene061801 |
| chr4.3 | exon | 10374288 | 10375152 | 10374288 | ID=MS.gene061801.t1.exon1;Parent=MS.gene061801.t1 |
| chr4.3 | CDS | 10374288 | 10375152 | 10374288 | ID=cds.MS.gene061801.t1;Parent=MS.gene061801.t1 |
| chr4.3 | exon | 10373802 | 10373854 | 10373802 | ID=MS.gene061801.t1.exon2;Parent=MS.gene061801.t1 |
| chr4.3 | CDS | 10373802 | 10373854 | 10373802 | ID=cds.MS.gene061801.t1;Parent=MS.gene061801.t1 |
| Gene Sequence |
| Protein sequence |
