Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059530.t1 | XP_013456841.1 | 97.5 | 201 | 4 | 1 | 1 | 201 | 438 | 637 | 2.60E-97 | 364.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059530.t1 | Q9S7Z8 | 75.0 | 204 | 40 | 2 | 5 | 201 | 419 | 618 | 1.1e-72 | 274.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059530.t1 | Q8GV76 | 97.5 | 201 | 4 | 1 | 1 | 201 | 438 | 637 | 1.9e-97 | 364.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049907 | MS.gene059530 | 0.823426 | 1.39E-53 | -1.69E-46 |
| MS.gene050581 | MS.gene059530 | 0.819614 | 1.06E-52 | -1.69E-46 |
| MS.gene052287 | MS.gene059530 | 0.813798 | 2.13E-51 | -1.69E-46 |
| MS.gene053813 | MS.gene059530 | 0.80657 | 7.72E-50 | -1.69E-46 |
| MS.gene05492 | MS.gene059530 | 0.839808 | 1.27E-57 | -1.69E-46 |
| MS.gene056931 | MS.gene059530 | 0.866372 | 2.99E-65 | -1.69E-46 |
| MS.gene056933 | MS.gene059530 | 0.866203 | 3.38E-65 | -1.69E-46 |
| MS.gene056935 | MS.gene059530 | 0.860989 | 1.41E-63 | -1.69E-46 |
| MS.gene056942 | MS.gene059530 | 0.807509 | 4.88E-50 | -1.69E-46 |
| MS.gene059529 | MS.gene059530 | 0.922529 | 8.73E-89 | -1.69E-46 |
| MS.gene059530 | MS.gene059711 | 0.800442 | 1.44E-48 | -1.69E-46 |
| MS.gene059530 | MS.gene060356 | 0.854903 | 9.03E-62 | -1.69E-46 |
| MS.gene059530 | MS.gene060559 | 0.843063 | 1.76E-58 | -1.69E-46 |
| MS.gene059530 | MS.gene060837 | 0.830805 | 2.39E-55 | -1.69E-46 |
| MS.gene059530 | MS.gene061801 | 0.802433 | 5.62E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene065204 | 0.828361 | 9.38E-55 | -1.69E-46 |
| MS.gene059530 | MS.gene069435 | 0.835111 | 2.03E-56 | -1.69E-46 |
| MS.gene059530 | MS.gene069867 | 0.805311 | 1.42E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene073007 | 0.83225 | 1.05E-55 | -1.69E-46 |
| MS.gene059530 | MS.gene07761 | 0.830329 | 3.12E-55 | -1.69E-46 |
| MS.gene059530 | MS.gene08520 | 0.800914 | 1.15E-48 | -1.69E-46 |
| MS.gene059530 | MS.gene20436 | 0.808247 | 3.40E-50 | -1.69E-46 |
| MS.gene059530 | MS.gene22224 | 0.817205 | 3.72E-52 | -1.69E-46 |
| MS.gene059530 | MS.gene22673 | 0.810897 | 9.17E-51 | -1.69E-46 |
| MS.gene059530 | MS.gene22859 | 0.815789 | 7.72E-52 | -1.69E-46 |
| MS.gene059530 | MS.gene24248 | 0.850976 | 1.20E-60 | -1.69E-46 |
| MS.gene059530 | MS.gene25721 | 0.8011 | 1.06E-48 | -1.69E-46 |
| MS.gene059530 | MS.gene26200 | 0.803732 | 3.03E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene26989 | 0.851127 | 1.09E-60 | -1.69E-46 |
| MS.gene059530 | MS.gene27251 | 0.84975 | 2.65E-60 | -1.69E-46 |
| MS.gene059530 | MS.gene28132 | 0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene28312 | 0.818105 | 2.33E-52 | -1.69E-46 |
| MS.gene059530 | MS.gene28942 | 0.805585 | 1.24E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene29785 | 0.826722 | 2.32E-54 | -1.69E-46 |
| MS.gene059530 | MS.gene31309 | 0.809196 | 2.13E-50 | -1.69E-46 |
| MS.gene059530 | MS.gene33036 | 0.856455 | 3.18E-62 | -1.69E-46 |
| MS.gene059530 | MS.gene35043 | 0.857577 | 1.48E-62 | -1.69E-46 |
| MS.gene059530 | MS.gene35480 | 0.809806 | 1.58E-50 | -1.69E-46 |
| MS.gene059530 | MS.gene36350 | 0.805452 | 1.33E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene37214 | 0.802255 | 6.12E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene37305 | 0.819396 | 1.19E-52 | -1.69E-46 |
| MS.gene059530 | MS.gene38054 | 0.809289 | 2.04E-50 | -1.69E-46 |
| MS.gene059530 | MS.gene39912 | 0.815121 | 1.09E-51 | -1.69E-46 |
| MS.gene059530 | MS.gene42824 | 0.809735 | 1.63E-50 | -1.69E-46 |
| MS.gene059530 | MS.gene45619 | 0.818164 | 2.26E-52 | -1.69E-46 |
| MS.gene059530 | MS.gene46507 | 0.827074 | 1.91E-54 | -1.69E-46 |
| MS.gene059530 | MS.gene49350 | 0.813389 | 2.62E-51 | -1.69E-46 |
| MS.gene059530 | MS.gene49928 | 0.847596 | 1.05E-59 | -1.69E-46 |
| MS.gene059530 | MS.gene57316 | 0.803949 | 2.73E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene59576 | 0.819613 | 1.06E-52 | -1.69E-46 |
| MS.gene059530 | MS.gene60363 | 0.829678 | 4.50E-55 | -1.69E-46 |
| MS.gene059530 | MS.gene61160 | 0.830963 | 2.18E-55 | -1.69E-46 |
| MS.gene059530 | MS.gene62691 | 0.80318 | 3.94E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene63451 | 0.823943 | 1.05E-53 | -1.69E-46 |
| MS.gene059530 | MS.gene66892 | 0.80453 | 2.07E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene69718 | 0.812844 | 3.46E-51 | -1.69E-46 |
| MS.gene059530 | MS.gene70333 | 0.805115 | 1.56E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene70393 | 0.849215 | 3.73E-60 | -1.69E-46 |
| MS.gene059530 | MS.gene71665 | 0.809107 | 2.23E-50 | -1.69E-46 |
| MS.gene059530 | MS.gene71861 | 0.806517 | 7.92E-50 | -1.69E-46 |
| MS.gene059530 | MS.gene75616 | 0.812783 | 3.56E-51 | -1.69E-46 |
| MS.gene059530 | MS.gene76532 | 0.80218 | 6.34E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene76557 | 0.801995 | 6.92E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene79762 | 0.80094 | 1.14E-48 | -1.69E-46 |
| MS.gene059530 | MS.gene82008 | 0.801514 | 8.69E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene85148 | 0.807368 | 5.23E-50 | -1.69E-46 |
| MS.gene059530 | MS.gene85171 | 0.802002 | 6.90E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene85662 | 0.843365 | 1.47E-58 | -1.69E-46 |
| MS.gene059530 | MS.gene86018 | 0.830523 | 2.80E-55 | -1.69E-46 |
| MS.gene059530 | MS.gene87850 | 0.813144 | 2.97E-51 | -1.69E-46 |
| MS.gene059530 | MS.gene90702 | 0.831034 | 2.10E-55 | -1.69E-46 |
| MS.gene059530 | MS.gene93585 | 0.813292 | 2.76E-51 | -1.69E-46 |
| MS.gene059530 | MS.gene98287 | 0.821041 | 4.99E-53 | -1.69E-46 |
| MS.gene059530 | MS.gene98451 | 0.80494 | 1.70E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene99774 | 0.810372 | 1.19E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059530.t1 | MTR_4g084870 | 97.512 | 201 | 4 | 1 | 1 | 201 | 438 | 637 | 2.08e-133 | 389 |
| MS.gene059530.t1 | MTR_1g030890 | 80.769 | 208 | 22 | 5 | 3 | 201 | 401 | 599 | 2.07e-102 | 308 |
| MS.gene059530.t1 | MTR_7g089360 | 72.195 | 205 | 45 | 4 | 3 | 201 | 371 | 569 | 2.06e-90 | 276 |
| MS.gene059530.t1 | MTR_7g089360 | 72.195 | 205 | 45 | 4 | 3 | 201 | 371 | 569 | 3.02e-90 | 276 |
| MS.gene059530.t1 | MTR_8g107360 | 71.958 | 189 | 35 | 2 | 13 | 201 | 332 | 502 | 1.74e-87 | 267 |
| MS.gene059530.t1 | MTR_6g069510 | 72.283 | 184 | 50 | 1 | 18 | 201 | 400 | 582 | 3.68e-85 | 263 |
| MS.gene059530.t1 | MTR_4g127100 | 84.354 | 147 | 23 | 0 | 55 | 201 | 457 | 603 | 1.51e-83 | 259 |
| MS.gene059530.t1 | MTR_4g127090 | 60.513 | 195 | 72 | 2 | 7 | 201 | 356 | 545 | 1.39e-74 | 234 |
| MS.gene059530.t1 | MTR_7g009370 | 66.912 | 136 | 45 | 0 | 66 | 201 | 200 | 335 | 6.11e-60 | 191 |
| MS.gene059530.t1 | MTR_1g029190 | 68.874 | 151 | 47 | 0 | 51 | 201 | 355 | 505 | 1.82e-58 | 192 |
| MS.gene059530.t1 | MTR_2g038470 | 55.696 | 158 | 68 | 1 | 46 | 201 | 330 | 487 | 3.49e-58 | 191 |
| MS.gene059530.t1 | MTR_6g011400 | 62.411 | 141 | 51 | 1 | 63 | 201 | 199 | 339 | 4.84e-57 | 184 |
| MS.gene059530.t1 | MTR_7g079720 | 49.333 | 150 | 71 | 1 | 52 | 201 | 195 | 339 | 2.61e-48 | 161 |
| MS.gene059530.t1 | MTR_1g030890 | 72.519 | 131 | 18 | 5 | 3 | 124 | 401 | 522 | 3.27e-48 | 164 |
| MS.gene059530.t1 | MTR_4g127100 | 84.722 | 72 | 11 | 0 | 55 | 126 | 457 | 528 | 4.02e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059530.t1 | AT2G01420 | 78.261 | 184 | 32 | 3 | 24 | 201 | 409 | 590 | 7.64e-94 | 286 |
| MS.gene059530.t1 | AT2G01420 | 78.261 | 184 | 32 | 3 | 24 | 201 | 413 | 594 | 9.58e-94 | 286 |
| MS.gene059530.t1 | AT1G70940 | 75.000 | 204 | 40 | 2 | 5 | 201 | 419 | 618 | 3.35e-92 | 282 |
| MS.gene059530.t1 | AT1G23080 | 69.725 | 218 | 46 | 4 | 3 | 201 | 377 | 593 | 2.06e-90 | 277 |
| MS.gene059530.t1 | AT1G23080 | 69.725 | 218 | 46 | 4 | 3 | 201 | 377 | 593 | 2.06e-90 | 277 |
| MS.gene059530.t1 | AT1G23080 | 66.812 | 229 | 38 | 4 | 3 | 201 | 377 | 597 | 3.82e-90 | 276 |
| MS.gene059530.t1 | AT5G57090 | 73.034 | 178 | 46 | 1 | 24 | 201 | 350 | 525 | 1.13e-85 | 263 |
| MS.gene059530.t1 | AT5G57090 | 73.034 | 178 | 46 | 1 | 24 | 201 | 450 | 625 | 3.83e-84 | 261 |
| MS.gene059530.t1 | AT1G73590 | 66.129 | 186 | 58 | 2 | 16 | 201 | 420 | 600 | 6.90e-72 | 229 |
| MS.gene059530.t1 | AT1G77110 | 56.784 | 199 | 78 | 3 | 10 | 201 | 351 | 548 | 1.59e-68 | 218 |
| MS.gene059530.t1 | AT1G77110 | 56.784 | 199 | 78 | 3 | 10 | 201 | 351 | 548 | 2.17e-68 | 219 |
| MS.gene059530.t1 | AT5G15100 | 59.155 | 142 | 58 | 0 | 60 | 201 | 204 | 345 | 1.40e-53 | 175 |
| MS.gene059530.t1 | AT5G16530 | 52.941 | 136 | 64 | 0 | 66 | 201 | 192 | 327 | 2.50e-49 | 163 |
| MS.gene059530.t1 | AT5G16530 | 52.941 | 136 | 64 | 0 | 66 | 201 | 192 | 327 | 5.59e-49 | 163 |
| MS.gene059530.t1 | AT1G23080 | 59.574 | 141 | 37 | 4 | 3 | 124 | 377 | 516 | 8.26e-43 | 150 |
| MS.gene059530.t1 | AT2G01420 | 72.897 | 107 | 21 | 3 | 24 | 124 | 413 | 517 | 2.16e-42 | 149 |
Find 65 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTCTCTTGTGGCATTT+AGG | 0.201887 | 4.4:+27795517 | MS.gene059530:CDS |
| TATATGCACAGGTTTGTTTA+TGG | 0.222888 | 4.4:+27796520 | MS.gene059530:intron |
| ACTCCACCAAGCTCTGTTTC+TGG | 0.225716 | 4.4:-27795258 | None:intergenic |
| ATGGCTGTTCGATTTCTTAC+AGG | 0.260480 | 4.4:+27796593 | MS.gene059530:CDS |
| AGTAATTCTTCTTCTTTAAC+TGG | 0.268630 | 4.4:-27795297 | None:intergenic |
| CCAGCCTCATTGGTCTAATT+TGG | 0.276052 | 4.4:+27795499 | MS.gene059530:CDS |
| GAACAATAGCTACACGTAAA+AGG | 0.317468 | 4.4:-27796664 | None:intergenic |
| AGTTAAAGAAGAAGAATTAC+TGG | 0.326836 | 4.4:+27795299 | MS.gene059530:CDS |
| GGAATGGCTATGTTCAGTTT+AGG | 0.344369 | 4.4:+27795771 | MS.gene059530:CDS |
| ATGAGGCTGGAGTACGTGTT+TGG | 0.350182 | 4.4:-27795486 | None:intergenic |
| TTTACGTGTAGCTATTGTTC+AGG | 0.368472 | 4.4:+27796667 | MS.gene059530:CDS |
| GTGTAGCTCCGCCGTTGAGC+TGG | 0.387107 | 4.4:-27795376 | None:intergenic |
| ATACTGTCTGATGCTGGTCT+TGG | 0.394410 | 4.4:+27795750 | MS.gene059530:CDS |
| TGGAGTACGTGTTTGGGTTA+CGG | 0.405705 | 4.4:-27795479 | None:intergenic |
| GTCTCATTCTGATCATGGTT+TGG | 0.411195 | 4.4:+27795445 | MS.gene059530:CDS |
| AAGACCAGCATCAGACAGTA+TGG | 0.415534 | 4.4:-27795748 | None:intergenic |
| GTTTCCACATGCAATCATCT+TGG | 0.416723 | 4.4:-27796552 | None:intergenic |
| TTTCCACATGCAATCATCTT+GGG | 0.421858 | 4.4:-27796551 | None:intergenic |
| GACCCGTCTCATTCTGATCA+TGG | 0.423697 | 4.4:+27795440 | MS.gene059530:CDS |
| TAGAAGATGAGGTAGAGAAA+GGG | 0.433169 | 4.4:+27795322 | MS.gene059530:CDS |
| TGAGGCTGGAGTACGTGTTT+GGG | 0.435204 | 4.4:-27795485 | None:intergenic |
| TGCCGGAGGCATGTGTTTCA+CGG | 0.440799 | 4.4:-27795409 | None:intergenic |
| CCTAGCTTGTTCAGAGCAGC+TGG | 0.440938 | 4.4:-27795348 | None:intergenic |
| CTCAGTTGCTTCATTTGCCA+TGG | 0.441201 | 4.4:+27796574 | MS.gene059530:CDS |
| AACACGTACTCCAGCCTCAT+TGG | 0.443272 | 4.4:+27795489 | MS.gene059530:CDS |
| GTAGAAGATGAGGTAGAGAA+AGG | 0.444020 | 4.4:+27795321 | MS.gene059530:CDS |
| GCTGCAGCTTCCATTGCTGT+TGG | 0.453701 | 4.4:+27796629 | MS.gene059530:CDS |
| ATGTGTTTCACGGTGGCTGT+TGG | 0.465776 | 4.4:-27795399 | None:intergenic |
| TGGTCTAATTTGGTCTCTTG+TGG | 0.467394 | 4.4:+27795509 | MS.gene059530:CDS |
| TGTTCCATTTGTGTTTGCTA+AGG | 0.469104 | 4.4:+27797121 | MS.gene059530:CDS |
| TACTCCTTAGCAAACACAAA+TGG | 0.469935 | 4.4:-27797125 | None:intergenic |
| CAATTACCCTGTACTAAGAA+TGG | 0.474245 | 4.4:-27797162 | None:intergenic |
| TCTTACAGGTCCTGCAGTCA+TGG | 0.474564 | 4.4:+27796607 | MS.gene059530:CDS |
| AGAAGATGAGGTAGAGAAAG+GGG | 0.475046 | 4.4:+27795323 | MS.gene059530:CDS |
| CATCCAGCCATTCTTAGTAC+AGG | 0.476526 | 4.4:+27797155 | MS.gene059530:CDS |
| AGACGGGTCATAACACTTGC+CGG | 0.480200 | 4.4:-27795426 | None:intergenic |
| TACCCTGTACTAAGAATGGC+TGG | 0.487434 | 4.4:-27797158 | None:intergenic |
| TGTGTTTCACGGTGGCTGTT+GGG | 0.490533 | 4.4:-27795398 | None:intergenic |
| AGAATTACTGGTAGAAGATG+AGG | 0.507214 | 4.4:+27795311 | MS.gene059530:CDS |
| TCCATTGCTGTTGGCCTGCG+TGG | 0.508632 | 4.4:+27796638 | MS.gene059530:CDS |
| ATCTCCATACTGTCTGATGC+TGG | 0.512641 | 4.4:+27795744 | MS.gene059530:CDS |
| CCAAATTAGACCAATGAGGC+TGG | 0.520634 | 4.4:-27795499 | None:intergenic |
| GTCTGATGCTGGTCTTGGAA+TGG | 0.532632 | 4.4:+27795755 | MS.gene059530:CDS |
| CACCGTGAAACACATGCCTC+CGG | 0.535122 | 4.4:+27795407 | MS.gene059530:CDS |
| GCCACGCAGGCCAACAGCAA+TGG | 0.535491 | 4.4:-27796639 | None:intergenic |
| CACGTAAAAGGTTGCCACGC+AGG | 0.546886 | 4.4:-27796652 | None:intergenic |
| GAAGCTGCAGCCATGACTGC+AGG | 0.547059 | 4.4:-27796617 | None:intergenic |
| AACCATGATCAGAATGAGAC+GGG | 0.555654 | 4.4:-27795442 | None:intergenic |
| AAATAGGCTGCACTTCCTCA+AGG | 0.557695 | 4.4:+27797095 | MS.gene059530:intron |
| CCAGCTGCTCTGAACAAGCT+AGG | 0.564553 | 4.4:+27795348 | MS.gene059530:CDS |
| CTGTACTAAGAATGGCTGGA+TGG | 0.577954 | 4.4:-27797154 | None:intergenic |
| ATGCCAGAAACAGAGCTTGG+TGG | 0.579731 | 4.4:+27795255 | MS.gene059530:CDS |
| GCTATGCCAGAAACAGAGCT+TGG | 0.606433 | 4.4:+27795252 | None:intergenic |
| AATAGGCTGCACTTCCTCAA+GGG | 0.617237 | 4.4:+27797096 | MS.gene059530:intron |
| AAACCATGATCAGAATGAGA+CGG | 0.622385 | 4.4:-27795443 | None:intergenic |
| TGTAAGAAATCGAACAGCCA+TGG | 0.628792 | 4.4:-27796591 | None:intergenic |
| AGGAGGATCCAGCTCAACGG+CGG | 0.640290 | 4.4:+27795368 | MS.gene059530:CDS |
| CAACCCAAGATGATTGCATG+TGG | 0.649541 | 4.4:+27796548 | MS.gene059530:CDS |
| ATCCAGCCATTCTTAGTACA+GGG | 0.657871 | 4.4:+27797156 | MS.gene059530:CDS |
| GCTAGGAGGATCCAGCTCAA+CGG | 0.658037 | 4.4:+27795365 | MS.gene059530:CDS |
| GCTGCTCTGAACAAGCTAGG+AGG | 0.688577 | 4.4:+27795351 | MS.gene059530:CDS |
| ACAAATGGAACAATCCCTTG+AGG | 0.689122 | 4.4:-27797110 | None:intergenic |
| GAGACCAAATTAGACCAATG+AGG | 0.693897 | 4.4:-27795503 | None:intergenic |
| CGGGTCATAACACTTGCCGG+AGG | 0.723150 | 4.4:-27795423 | None:intergenic |
| CGGAGGCATGTGTTTCACGG+TGG | 0.739555 | 4.4:-27795406 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATCATTACAAAATTTA+TGG | - | chr4.4:27796991-27797010 | None:intergenic | 10.0% |
| !! | ATAATCATTACAAAATTTAT+GGG | - | chr4.4:27796990-27797009 | None:intergenic | 10.0% |
| !! | GTTAAATTAATGAAATTTAT+GGG | - | chr4.4:27797027-27797046 | None:intergenic | 10.0% |
| !! | TGTTAAATTAATGAAATTTA+TGG | - | chr4.4:27797028-27797047 | None:intergenic | 10.0% |
| !!! | TAATTTTGTTTAAACTAAAA+TGG | + | chr4.4:27796848-27796867 | MS.gene059530:intron | 10.0% |
| !!! | AATAATTTCCCATAATTTTT+GGG | + | chr4.4:27796928-27796947 | MS.gene059530:intron | 15.0% |
| !!! | ATTAGAAAATATAATGGAAA+TGG | - | chr4.4:27795906-27795925 | None:intergenic | 15.0% |
| !!! | ATTGATTTCTCTATTATTTT+AGG | - | chr4.4:27795726-27795745 | None:intergenic | 15.0% |
| !!! | TGATTATTAATTTTGATTGT+AGG | + | chr4.4:27795685-27795704 | MS.gene059530:intron | 15.0% |
| !!! | TTAGAAAATATAATGGAAAT+GGG | - | chr4.4:27795905-27795924 | None:intergenic | 15.0% |
| !! | AAGAATGAAATTATTGTAGA+AGG | - | chr4.4:27795826-27795845 | None:intergenic | 20.0% |
| !!! | ACTTAAATTAATCGATTTTG+CGG | - | chr4.4:27795575-27795594 | None:intergenic | 20.0% |
| !!! | GAATAATTTCCCATAATTTT+TGG | + | chr4.4:27796927-27796946 | MS.gene059530:intron | 20.0% |
| !!! | GTAGAGTTTTTATATAAGTT+TGG | + | chr4.4:27795657-27795676 | MS.gene059530:intron | 20.0% |
| !!! | TTATTAATTTTGATTGTAGG+TGG | + | chr4.4:27795688-27795707 | MS.gene059530:intron | 20.0% |
| ! | AATCAGGAAAAACTTCAAAA+CGG | + | chr4.4:27796383-27796402 | MS.gene059530:intron | 25.0% |
| ! | AATGAAATTATTGTAGAAGG+AGG | - | chr4.4:27795823-27795842 | None:intergenic | 25.0% |
| ! | AATGGTGTTTAATGTAAAAG+AGG | - | chr4.4:27795870-27795889 | None:intergenic | 25.0% |
| ! | AATGTCTAATTTCACTAATC+AGG | + | chr4.4:27796367-27796386 | MS.gene059530:intron | 25.0% |
| ! | ACAATCACAAAACAATGAAT+AGG | + | chr4.4:27796062-27796081 | MS.gene059530:intron | 25.0% |
| ! | AGTAACAAACTCCAAAATAA+TGG | - | chr4.4:27796195-27796214 | None:intergenic | 25.0% |
| ! | AGTAATTCTTCTTCTTTAAC+TGG | - | chr4.4:27795300-27795319 | None:intergenic | 25.0% |
| ! | AGTTAAAGAAGAAGAATTAC+TGG | + | chr4.4:27795299-27795318 | MS.gene059530:CDS | 25.0% |
| ! | ATGAAAATGTTGCTGAAAAT+AGG | + | chr4.4:27797079-27797098 | MS.gene059530:intron | 25.0% |
| ! | CAATCACAAAACAATGAATA+GGG | + | chr4.4:27796063-27796082 | MS.gene059530:intron | 25.0% |
| ! | TATAGATTTGAGGAAAAGAA+AGG | + | chr4.4:27796152-27796171 | MS.gene059530:intron | 25.0% |
| ! | TCTATGAAATGTACAATATG+AGG | + | chr4.4:27796736-27796755 | MS.gene059530:intron | 25.0% |
| ! | TGTTTAATGTAAAAGAGGAA+AGG | - | chr4.4:27795865-27795884 | None:intergenic | 25.0% |
| !! | ACTATTTTGCAACCAAAATT+TGG | + | chr4.4:27796342-27796361 | MS.gene059530:intron | 25.0% |
| !! | ATTAGACATTTGCCAAATTT+TGG | - | chr4.4:27796357-27796376 | None:intergenic | 25.0% |
| !!! | AAACACATGTCAATTTGTTT+TGG | - | chr4.4:27795935-27795954 | None:intergenic | 25.0% |
| AAACAATGAATAGGGTACAA+TGG | + | chr4.4:27796071-27796090 | MS.gene059530:intron | 30.0% | |
| ACTAGTGTTCCCAAAAATTA+TGG | - | chr4.4:27796940-27796959 | None:intergenic | 30.0% | |
| CAATGGGAATTATAGATTTG+AGG | + | chr4.4:27796142-27796161 | MS.gene059530:intron | 30.0% | |
| CTAGTGTTCCCAAAAATTAT+GGG | - | chr4.4:27796939-27796958 | None:intergenic | 30.0% | |
| GAAAAGAAAGGAAGTAACTA+AGG | + | chr4.4:27796164-27796183 | MS.gene059530:intron | 30.0% | |
| TTATTGTAGAAGGAGGAATT+TGG | - | chr4.4:27795816-27795835 | None:intergenic | 30.0% | |
| ! | AAATATAATGGAAATGGGAG+TGG | - | chr4.4:27795900-27795919 | None:intergenic | 30.0% |
| ! | TATATGCACAGGTTTGTTTA+TGG | + | chr4.4:27796520-27796539 | MS.gene059530:intron | 30.0% |
| !! | GTTTTTGTTTGTATATGCAC+AGG | + | chr4.4:27796509-27796528 | MS.gene059530:intron | 30.0% |
| !!! | GCTTATTTTTTAAACCATCG+CGG | - | chr4.4:27796827-27796846 | None:intergenic | 30.0% |
| !!! | TTTTTTATCTTGTACCCTCT+TGG | + | chr4.4:27796465-27796484 | MS.gene059530:intron | 30.0% |
| AAACCATGATCAGAATGAGA+CGG | - | chr4.4:27795446-27795465 | None:intergenic | 35.0% | |
| ACATGATAGAGTGGAAATCA+AGG | - | chr4.4:27796704-27796723 | None:intergenic | 35.0% | |
| ACGTTATTGTTCAGCAAACA+TGG | - | chr4.4:27796240-27796259 | None:intergenic | 35.0% | |
| AGAATTACTGGTAGAAGATG+AGG | + | chr4.4:27795311-27795330 | MS.gene059530:CDS | 35.0% | |
| AGGAAAGGAATTGCAAAGAA+AGG | - | chr4.4:27795850-27795869 | None:intergenic | 35.0% | |
| ATGAGACTATCTATGGCAAT+GGG | + | chr4.4:27796126-27796145 | MS.gene059530:intron | 35.0% | |
| GAACAATAGCTACACGTAAA+AGG | - | chr4.4:27796667-27796686 | None:intergenic | 35.0% | |
| GAATGAATGTGATGGTAACA+TGG | + | chr4.4:27796099-27796118 | MS.gene059530:intron | 35.0% | |
| GATAACGTGAATGTAAAGTG+TGG | + | chr4.4:27796425-27796444 | MS.gene059530:intron | 35.0% | |
| GATTTCCACTCTATCATGTT+AGG | + | chr4.4:27796705-27796724 | MS.gene059530:intron | 35.0% | |
| TACTCCTTAGCAAACACAAA+TGG | - | chr4.4:27797128-27797147 | None:intergenic | 35.0% | |
| TAGAAGATGAGGTAGAGAAA+GGG | + | chr4.4:27795322-27795341 | MS.gene059530:CDS | 35.0% | |
| TGGTATGATGAGACTATCTA+TGG | + | chr4.4:27796119-27796138 | MS.gene059530:intron | 35.0% | |
| TGTACCCTCTTGGATAAAAA+TGG | + | chr4.4:27796475-27796494 | MS.gene059530:intron | 35.0% | |
| TTTACGTGTAGCTATTGTTC+AGG | + | chr4.4:27796667-27796686 | MS.gene059530:CDS | 35.0% | |
| TTTCCACATGCAATCATCTT+GGG | - | chr4.4:27796554-27796573 | None:intergenic | 35.0% | |
| ! | ATGTTTGCTGAACAATAACG+TGG | + | chr4.4:27796239-27796258 | MS.gene059530:intron | 35.0% |
| ! | TGTTCCATTTGTGTTTGCTA+AGG | + | chr4.4:27797121-27797140 | MS.gene059530:CDS | 35.0% |
| ! | TGTTTGCTGAACAATAACGT+GGG | + | chr4.4:27796240-27796259 | MS.gene059530:intron | 35.0% |
| AAATATCAGACCCCACATGT+CGG | - | chr4.4:27796292-27796311 | None:intergenic | 40.0% | |
| AACCATGATCAGAATGAGAC+GGG | - | chr4.4:27795445-27795464 | None:intergenic | 40.0% | |
| AATGGGAGTGGAAGCAATAA+TGG | - | chr4.4:27795888-27795907 | None:intergenic | 40.0% | |
| AATGGTCGAGCTTGAGATAT+CGG | + | chr4.4:27796866-27796885 | MS.gene059530:intron | 40.0% | |
| ACAAATGGAACAATCCCTTG+AGG | - | chr4.4:27797113-27797132 | None:intergenic | 40.0% | |
| ACCCTCTTGGATAAAAATGG+AGG | + | chr4.4:27796478-27796497 | MS.gene059530:intron | 40.0% | |
| AGAAGATGAGGTAGAGAAAG+GGG | + | chr4.4:27795323-27795342 | MS.gene059530:CDS | 40.0% | |
| ATGGCTGTTCGATTTCTTAC+AGG | + | chr4.4:27796593-27796612 | MS.gene059530:CDS | 40.0% | |
| CCACACGTATTTACACAGTT+AGG | + | chr4.4:27796797-27796816 | MS.gene059530:intron | 40.0% | |
| CCCTCTTGGATAAAAATGGA+GGG | + | chr4.4:27796479-27796498 | MS.gene059530:intron | 40.0% | |
| CCTAACTGTGTAAATACGTG+TGG | - | chr4.4:27796800-27796819 | None:intergenic | 40.0% | |
| GAGACCAAATTAGACCAATG+AGG | - | chr4.4:27795506-27795525 | None:intergenic | 40.0% | |
| GATGAGACTATCTATGGCAA+TGG | + | chr4.4:27796125-27796144 | MS.gene059530:intron | 40.0% | |
| GGAATGGCTATGTTCAGTTT+AGG | + | chr4.4:27795771-27795790 | MS.gene059530:CDS | 40.0% | |
| GTAGAAGATGAGGTAGAGAA+AGG | + | chr4.4:27795321-27795340 | MS.gene059530:CDS | 40.0% | |
| GTCTCATTCTGATCATGGTT+TGG | + | chr4.4:27795445-27795464 | MS.gene059530:CDS | 40.0% | |
| GTTTCCACATGCAATCATCT+TGG | - | chr4.4:27796555-27796574 | None:intergenic | 40.0% | |
| GTTTGCCTAACATGATAGAG+TGG | - | chr4.4:27796713-27796732 | None:intergenic | 40.0% | |
| TGGTCTAATTTGGTCTCTTG+TGG | + | chr4.4:27795509-27795528 | MS.gene059530:CDS | 40.0% | |
| TGTAAGAAATCGAACAGCCA+TGG | - | chr4.4:27796594-27796613 | None:intergenic | 40.0% | |
| TTTGGTCTCTTGTGGCATTT+AGG | + | chr4.4:27795517-27795536 | MS.gene059530:CDS | 40.0% | |
| ! | GTTTGCTGAACAATAACGTG+GGG | + | chr4.4:27796241-27796260 | MS.gene059530:intron | 40.0% |
| !! | ACCCTCCATTTTTATCCAAG+AGG | - | chr4.4:27796483-27796502 | None:intergenic | 40.0% |
| !! | CCCTCCATTTTTATCCAAGA+GGG | - | chr4.4:27796482-27796501 | None:intergenic | 40.0% |
| !! | TGTGGGGTCTGATATTTTAG+CGG | + | chr4.4:27796295-27796314 | MS.gene059530:intron | 40.0% |
| !!! | CTAAGGAGCGTCCATTATTT+TGG | + | chr4.4:27796181-27796200 | MS.gene059530:intron | 40.0% |
| AAATAGGCTGCACTTCCTCA+AGG | + | chr4.4:27797095-27797114 | MS.gene059530:intron | 45.0% | |
| AAGACCAGCATCAGACAGTA+TGG | - | chr4.4:27795751-27795770 | None:intergenic | 45.0% | |
| AATAGGCTGCACTTCCTCAA+GGG | + | chr4.4:27797096-27797115 | MS.gene059530:intron | 45.0% | |
| AATATCAGACCCCACATGTC+GGG | - | chr4.4:27796291-27796310 | None:intergenic | 45.0% | |
| ACGTGTGGTAAGAGACTTCT+GGG | - | chr4.4:27796785-27796804 | None:intergenic | 45.0% | |
| ATCTCCATACTGTCTGATGC+TGG | + | chr4.4:27795744-27795763 | MS.gene059530:CDS | 45.0% | |
| CAACCCAAGATGATTGCATG+TGG | + | chr4.4:27796548-27796567 | MS.gene059530:CDS | 45.0% | |
| CATCCAGCCATTCTTAGTAC+AGG | + | chr4.4:27797155-27797174 | MS.gene059530:CDS | 45.0% | |
| CCAAATTAGACCAATGAGGC+TGG | - | chr4.4:27795502-27795521 | None:intergenic | 45.0% | |
| CTCAGTTGCTTCATTTGCCA+TGG | + | chr4.4:27796574-27796593 | MS.gene059530:CDS | 45.0% | |
| CTGTACTAAGAATGGCTGGA+TGG | - | chr4.4:27797157-27797176 | None:intergenic | 45.0% | |
| CTTGAGATATCGGATTGTCG+CGG | + | chr4.4:27796876-27796895 | MS.gene059530:intron | 45.0% | |
| GCACGTATTCATGCAGTTAG+TGG | - | chr4.4:27796904-27796923 | None:intergenic | 45.0% | |
| GTTCAGCAAACATGGTCACT+TGG | - | chr4.4:27796232-27796251 | None:intergenic | 45.0% | |
| TACGTGTGGTAAGAGACTTC+TGG | - | chr4.4:27796786-27796805 | None:intergenic | 45.0% | |
| TGAATAGGGTACAATGGCAG+TGG | + | chr4.4:27796077-27796096 | MS.gene059530:intron | 45.0% | |
| TGGCAGTGGAATGAATGTGA+TGG | + | chr4.4:27796091-27796110 | MS.gene059530:intron | 45.0% | |
| ! | ATACTGTCTGATGCTGGTCT+TGG | + | chr4.4:27795750-27795769 | MS.gene059530:CDS | 45.0% |
| ! | CCAGCCTCATTGGTCTAATT+TGG | + | chr4.4:27795499-27795518 | MS.gene059530:CDS | 45.0% |
| ! | GTAAGAGACTTCTGGGAATG+TGG | - | chr4.4:27796778-27796797 | None:intergenic | 45.0% |
| ! | TGGAGTACGTGTTTGGGTTA+CGG | - | chr4.4:27795482-27795501 | None:intergenic | 45.0% |
| !! | ATTTTAGCGGTCCACGACTA+TGG | + | chr4.4:27796308-27796327 | MS.gene059530:intron | 45.0% |
| !!! | TTTTATATTAGAAAATATAA+TGG | - | chr4.4:27795912-27795931 | None:intergenic | 5.0% |
| AACACGTACTCCAGCCTCAT+TGG | + | chr4.4:27795489-27795508 | MS.gene059530:CDS | 50.0% | |
| ACATGTCCCTACCATAGTCG+TGG | - | chr4.4:27796322-27796341 | None:intergenic | 50.0% | |
| ACTCCACCAAGCTCTGTTTC+TGG | - | chr4.4:27795261-27795280 | None:intergenic | 50.0% | |
| AGACGGGTCATAACACTTGC+CGG | - | chr4.4:27795429-27795448 | None:intergenic | 50.0% | |
| ATATCAGACCCCACATGTCG+GGG | - | chr4.4:27796290-27796309 | None:intergenic | 50.0% | |
| ATGAGGCTGGAGTACGTGTT+TGG | - | chr4.4:27795489-27795508 | None:intergenic | 50.0% | |
| ATGCCAGAAACAGAGCTTGG+TGG | + | chr4.4:27795255-27795274 | MS.gene059530:CDS | 50.0% | |
| ATGTGTTTCACGGTGGCTGT+TGG | - | chr4.4:27795402-27795421 | None:intergenic | 50.0% | |
| GACCCGTCTCATTCTGATCA+TGG | + | chr4.4:27795440-27795459 | MS.gene059530:CDS | 50.0% | |
| TCTTACAGGTCCTGCAGTCA+TGG | + | chr4.4:27796607-27796626 | MS.gene059530:CDS | 50.0% | |
| TGAGGCTGGAGTACGTGTTT+GGG | - | chr4.4:27795488-27795507 | None:intergenic | 50.0% | |
| TGTGTTTCACGGTGGCTGTT+GGG | - | chr4.4:27795401-27795420 | None:intergenic | 50.0% | |
| !! | GTCTGATGCTGGTCTTGGAA+TGG | + | chr4.4:27795755-27795774 | MS.gene059530:CDS | 50.0% |
| AGCGGTCCACGACTATGGTA+GGG | + | chr4.4:27796313-27796332 | MS.gene059530:intron | 55.0% | |
| AGTGCAATGTCCCCGACATG+TGG | + | chr4.4:27796277-27796296 | MS.gene059530:intron | 55.0% | |
| CACAGTTAGGAGATCCGCGA+TGG | + | chr4.4:27796810-27796829 | MS.gene059530:intron | 55.0% | |
| CACCGTGAAACACATGCCTC+CGG | + | chr4.4:27795407-27795426 | MS.gene059530:CDS | 55.0% | |
| CACGTAAAAGGTTGCCACGC+AGG | - | chr4.4:27796655-27796674 | None:intergenic | 55.0% | |
| GCTAGGAGGATCCAGCTCAA+CGG | + | chr4.4:27795365-27795384 | MS.gene059530:CDS | 55.0% | |
| GCTGCAGCTTCCATTGCTGT+TGG | + | chr4.4:27796629-27796648 | MS.gene059530:CDS | 55.0% | |
| GTGCAATGTCCCCGACATGT+GGG | + | chr4.4:27796278-27796297 | MS.gene059530:intron | 55.0% | |
| TAGCGGTCCACGACTATGGT+AGG | + | chr4.4:27796312-27796331 | MS.gene059530:intron | 55.0% | |
| TGCAATGTCCCCGACATGTG+GGG | + | chr4.4:27796279-27796298 | MS.gene059530:intron | 55.0% | |
| ! | CCAGCTGCTCTGAACAAGCT+AGG | + | chr4.4:27795348-27795367 | MS.gene059530:CDS | 55.0% |
| ! | GCTGCTCTGAACAAGCTAGG+AGG | + | chr4.4:27795351-27795370 | MS.gene059530:CDS | 55.0% |
| ! | TGCCGGAGGCATGTGTTTCA+CGG | - | chr4.4:27795412-27795431 | None:intergenic | 55.0% |
| !! | CCTAGCTTGTTCAGAGCAGC+TGG | - | chr4.4:27795351-27795370 | None:intergenic | 55.0% |
| AGGAGGATCCAGCTCAACGG+CGG | + | chr4.4:27795368-27795387 | MS.gene059530:CDS | 60.0% | |
| CGGGTCATAACACTTGCCGG+AGG | - | chr4.4:27795426-27795445 | None:intergenic | 60.0% | |
| GAAGCTGCAGCCATGACTGC+AGG | - | chr4.4:27796620-27796639 | None:intergenic | 60.0% | |
| ! | CGGAGGCATGTGTTTCACGG+TGG | - | chr4.4:27795409-27795428 | None:intergenic | 60.0% |
| ! | TCCATTGCTGTTGGCCTGCG+TGG | + | chr4.4:27796638-27796657 | MS.gene059530:CDS | 60.0% |
| GCCACGCAGGCCAACAGCAA+TGG | - | chr4.4:27796642-27796661 | None:intergenic | 65.0% | |
| GTGTAGCTCCGCCGTTGAGC+TGG | - | chr4.4:27795379-27795398 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 27795255 | 27797177 | 27795255 | ID=MS.gene059530 |
| chr4.4 | mRNA | 27795255 | 27797177 | 27795255 | ID=MS.gene059530.t1;Parent=MS.gene059530 |
| chr4.4 | exon | 27795255 | 27795538 | 27795255 | ID=MS.gene059530.t1.exon1;Parent=MS.gene059530.t1 |
| chr4.4 | CDS | 27795255 | 27795538 | 27795255 | ID=cds.MS.gene059530.t1;Parent=MS.gene059530.t1 |
| chr4.4 | exon | 27795707 | 27795792 | 27795707 | ID=MS.gene059530.t1.exon2;Parent=MS.gene059530.t1 |
| chr4.4 | CDS | 27795707 | 27795792 | 27795707 | ID=cds.MS.gene059530.t1;Parent=MS.gene059530.t1 |
| chr4.4 | exon | 27796531 | 27796688 | 27796531 | ID=MS.gene059530.t1.exon3;Parent=MS.gene059530.t1 |
| chr4.4 | CDS | 27796531 | 27796688 | 27796531 | ID=cds.MS.gene059530.t1;Parent=MS.gene059530.t1 |
| chr4.4 | exon | 27797101 | 27797177 | 27797101 | ID=MS.gene059530.t1.exon4;Parent=MS.gene059530.t1 |
| chr4.4 | CDS | 27797101 | 27797177 | 27797101 | ID=cds.MS.gene059530.t1;Parent=MS.gene059530.t1 |
| Gene Sequence |
| Protein sequence |
