AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062025

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062025.t1 MTR_2g046710 99.747 396 1 0 1 396 1 396 0.0 817
MS.gene062025.t1 MTR_4g123810 93.878 392 24 0 1 392 1 392 0.0 742
MS.gene062025.t1 MTR_7g110310 93.573 389 25 0 4 392 3 391 0.0 740
MS.gene062025.t1 MTR_7g102120 90.674 386 36 0 4 389 2 387 0.0 706
MS.gene062025.t1 MTR_1g063060 88.083 386 46 0 4 389 2 387 0.0 694
MS.gene062025.t1 MTR_1g063060 88.083 386 46 0 4 389 20 405 0.0 694
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062025.t1 AT3G17390 94.359 390 22 0 4 393 2 391 0.0 744
MS.gene062025.t1 AT1G02500 92.802 389 28 0 4 392 2 390 0.0 726
MS.gene062025.t1 AT1G02500 92.802 389 28 0 4 392 2 390 0.0 726
MS.gene062025.t1 AT4G01850 91.260 389 34 0 4 392 2 390 0.0 723
MS.gene062025.t1 AT4G01850 91.260 389 34 0 4 392 2 390 0.0 723
MS.gene062025.t1 AT2G36880 90.674 386 36 0 4 389 2 387 0.0 708
MS.gene062025.t1 AT2G36880 90.674 386 36 0 4 389 2 387 0.0 708

Find 113 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCTGCTTATGGTCATTT+TGG 0.234247 2.3:+43990059 MS.gene062025:CDS
ATGTTAAGGATTTCCTTATC+AGG 0.261463 2.3:-43989951 None:intergenic
TTCCTTATCAGGGATCTTTC+CGG 0.289318 2.3:-43989940 None:intergenic
GTTGCAAGAACATGGGTTAA+AGG 0.294303 2.3:-43989381 None:intergenic
CATGTTCTTGCAACCAAGTT+AGG 0.294943 2.3:+43989390 MS.gene062025:CDS
ACCAACATGGTTATGGTCTT+TGG 0.296902 2.3:+43989108 MS.gene062025:CDS
TTCTCATCAAGGTACTTCTC+TGG 0.310083 2.3:-43989624 None:intergenic
CATCGATACCTACGGTGGTT+GGG 0.340499 2.3:+43989731 MS.gene062025:CDS
ATCTGGTCGCAAAGCTTGTC+GGG 0.354536 2.3:-43989012 None:intergenic
TGAAAGAAACCTTTGACTTC+AGG 0.356558 2.3:+43989976 MS.gene062025:CDS
TTAAGAGGGGTGGAAATAAC+AGG 0.368924 2.3:+43990027 MS.gene062025:CDS
TCACATGCAACTTTGCTGTC+TGG 0.378990 2.3:-43989072 None:intergenic
GTGATCAAGGTCACATGTTC+GGG 0.391846 2.3:+43989328 MS.gene062025:CDS
CTATCAACCTTGATCTTAAG+AGG 0.391961 2.3:+43990012 MS.gene062025:CDS
GATATTGCTCAAGGTGTTCA+TGG 0.399050 2.3:+43989270 MS.gene062025:CDS
GGTGATCAAGGTCACATGTT+CGG 0.414273 2.3:+43989327 MS.gene062025:CDS
CACAAAGACCAACATGGTTA+TGG 0.418184 2.3:+43989101 MS.gene062025:CDS
AGGTTTCTTTCACAATGTTA+AGG 0.420122 2.3:-43989965 None:intergenic
TTCCACCCCTCTTAAGATCA+AGG 0.427046 2.3:-43990019 None:intergenic
TCTCATCAAGGTACTTCTCT+GGG 0.433415 2.3:-43989623 None:intergenic
AGGTTGATAGAGATCATTCC+TGG 0.433466 2.3:-43989999 None:intergenic
ATCTTCCACTTGAACCCTTC+AGG 0.443169 2.3:+43989651 MS.gene062025:CDS
CATCGTGCTGTGTTGAGATA+AGG 0.443531 2.3:-43989539 None:intergenic
TGAACACCTTGAGCAATATC+AGG 0.445358 2.3:-43989267 None:intergenic
TCACAGATTCAGATGTGTAT+AGG 0.445528 2.3:-43988978 None:intergenic
GGTTGGGGTGCACACGGTGG+TGG 0.446281 2.3:+43989747 MS.gene062025:CDS
CATGGTGACGCTGGTCTAAC+CGG 0.447546 2.3:+43989696 MS.gene062025:CDS
CACGGTGGTGGTGCTTTCTC+CGG 0.452162 2.3:+43989759 MS.gene062025:CDS
GCAAAGAGTATTGTTGCTAA+TGG 0.456252 2.3:+43989834 MS.gene062025:CDS
CTAACTTGGTTGCAAGAACA+TGG 0.459951 2.3:-43989389 None:intergenic
CAAGAACGGCATCAGAGATC+TGG 0.466047 2.3:-43989029 None:intergenic
GAAACCTTTGACTTCAGGCC+AGG 0.467102 2.3:+43989981 MS.gene062025:CDS
GTGACTTGGGTCTTTCCATC+AGG 0.467493 2.3:-43989462 None:intergenic
CCTTCAGGCCGTTTCGTCAT+CGG 0.467571 2.3:+43989666 MS.gene062025:CDS
TTGCTAATGGACTTGCTAGA+AGG 0.469452 2.3:+43989847 MS.gene062025:CDS
ATCGATACCTACGGTGGTTG+GGG 0.475144 2.3:+43989732 MS.gene062025:CDS
ACAAACACGGACAATGGCTC+TGG 0.479016 2.3:-43989903 None:intergenic
CGTAACACATGCAGGAACAT+AGG 0.489461 2.3:+43989174 MS.gene062025:CDS
TTTGTTGATTCTTACGGTAC+CGG 0.493288 2.3:+43989921 MS.gene062025:CDS
GTTCAAGTTTCCTATGCTAT+CGG 0.494037 2.3:+43989876 MS.gene062025:CDS
ATCAGCTGCAATTTCATCGT+TGG 0.496338 2.3:-43989571 None:intergenic
TGAAGGGTTCAAGTGGAAGA+TGG 0.500503 2.3:-43989649 None:intergenic
TCCGTGTTTGTTGATTCTTA+CGG 0.503083 2.3:+43989915 MS.gene062025:CDS
TTCGTCATCGGTGGTCCTCA+TGG 0.503356 2.3:+43989678 MS.gene062025:CDS
GATCTGGTCGCAAAGCTTGT+CGG 0.504899 2.3:-43989013 None:intergenic
AGTGAGCTTAGCTCCTAACT+TGG 0.505858 2.3:-43989403 None:intergenic
GAAATTGGTGCTGGTGATCA+AGG 0.514486 2.3:+43989315 MS.gene062025:CDS
TGTTAAGGATTTCCTTATCA+GGG 0.514572 2.3:-43989950 None:intergenic
AAGGTACTTCTCTGGGATCA+CGG 0.517512 2.3:-43989616 None:intergenic
TACGGTGGTTGGGGTGCACA+CGG 0.522520 2.3:+43989741 MS.gene062025:CDS
TGCTGTCTGGATCTTGCTCA+AGG 0.528629 2.3:-43989059 None:intergenic
GCAAGAACGGAACATGCCCT+TGG 0.529608 2.3:+43989433 MS.gene062025:CDS
TACCGGAAAGATCCCTGATA+AGG 0.532446 2.3:+43989938 MS.gene062025:CDS
GCTAACTTTCCACCCTTGAG+TGG 0.533954 2.3:-43990119 None:intergenic
TCATCGATACCTACGGTGGT+TGG 0.534200 2.3:+43989730 MS.gene062025:CDS
AGGTACTTCTCTGGGATCAC+GGG 0.534979 2.3:-43989615 None:intergenic
TCACCAGCACCAATTTCCTC+AGG 0.537693 2.3:-43989309 None:intergenic
CATTCCTGGCCTGAAGTCAA+AGG 0.538937 2.3:-43989985 None:intergenic
GGTGGTCCTCATGGTGACGC+TGG 0.540442 2.3:+43989687 MS.gene062025:CDS
CTCACTGAAGTTCGCAAGAA+CGG 0.541655 2.3:+43989420 MS.gene062025:CDS
AACCTTGATCTTAAGAGGGG+TGG 0.542096 2.3:+43990017 MS.gene062025:CDS
CGATGACGAAACGGCCTGAA+GGG 0.544735 2.3:-43989665 None:intergenic
GAAATACTCAATAGTGACTT+GGG 0.547189 2.3:-43989475 None:intergenic
CATAAGCTCAGGTGTTTCAT+CGG 0.547507 2.3:-43989358 None:intergenic
GAGGACCACCGATGACGAAA+CGG 0.552401 2.3:-43989674 None:intergenic
TGAAATACTCAATAGTGACT+TGG 0.552787 2.3:-43989476 None:intergenic
TGCCCTTGGTTGAGACCTGA+TGG 0.559477 2.3:+43989447 MS.gene062025:CDS
AAGATCCAACAAAAGTCGAC+AGG 0.563704 2.3:+43989784 MS.gene062025:CDS
TGGGTTAAAGGCATAAGCTC+AGG 0.565243 2.3:-43989369 None:intergenic
CACATCTGAATCTGTGAACG+AGG 0.567405 2.3:+43988984 MS.gene062025:CDS
GGAGGTTGTGAAGCCACTCA+AGG 0.570115 2.3:+43990106 MS.gene062025:CDS
TATCAACCTTGATCTTAAGA+GGG 0.570559 2.3:+43990013 MS.gene062025:CDS
CCGATGACGAAACGGCCTGA+AGG 0.572989 2.3:-43989666 None:intergenic
AGATTGTTCGTAACACATGC+AGG 0.575918 2.3:+43989166 MS.gene062025:CDS
TTCCATCAGGTCTCAACCAA+GGG 0.579295 2.3:-43989449 None:intergenic
ATCGATGATGATCTTGCGGC+CGG 0.584426 2.3:-43989715 None:intergenic
GTGTTGAGATAAGGACGGTA+TGG 0.586897 2.3:-43989530 None:intergenic
CCATCACTTCACTTAGGCAG+TGG 0.590313 2.3:-43990141 None:intergenic
AGACCTGAGGAAATTGGTGC+TGG 0.593942 2.3:+43989306 MS.gene062025:CDS
TATTGAGTATTTCAATGACA+AGG 0.595054 2.3:+43989485 MS.gene062025:CDS
TTTCAATGACAAGGGCGCCA+TGG 0.602020 2.3:+43989494 MS.gene062025:CDS
GAATCAACAAACACGGACAA+TGG 0.604860 2.3:-43989909 None:intergenic
TCAGGCCGTTTCGTCATCGG+TGG 0.606053 2.3:+43989669 MS.gene062025:CDS
AACGGCCTGAAGGGTTCAAG+TGG 0.607726 2.3:-43989656 None:intergenic
CAGAGTCCTGATATTGCTCA+AGG 0.609518 2.3:+43989261 MS.gene062025:CDS
GAGATGATGCTGATTTCACA+TGG 0.613131 2.3:+43990084 MS.gene062025:CDS
CTCAAGGCAAGCATCAAGAA+CGG 0.613435 2.3:-43989043 None:intergenic
ACCAAAGACCATAACCATGT+TGG 0.617396 2.3:-43989109 None:intergenic
CTCTGGAACACCGATAGCAT+AGG 0.620591 2.3:-43989886 None:intergenic
AGGACGGTATGGACACGGAT+CGG 0.620832 2.3:-43989519 None:intergenic
AGATAAGGACGGTATGGACA+CGG 0.625832 2.3:-43989524 None:intergenic
ATTGAGTATTTCAATGACAA+GGG 0.626222 2.3:+43989486 MS.gene062025:CDS
TTTCCATCAGGTCTCAACCA+AGG 0.628406 2.3:-43989450 None:intergenic
CCAACAAAAGTCGACAGGAG+TGG 0.630861 2.3:+43989789 MS.gene062025:CDS
GAGGTTGTGAAGCCACTCAA+GGG 0.631025 2.3:+43990107 MS.gene062025:CDS
AAGATCATCATCGATACCTA+CGG 0.632923 2.3:+43989723 MS.gene062025:CDS
TCTGTTGTTCAATGTTGACA+AGG 0.633149 2.3:-43989242 None:intergenic
ATGGACACGGATCGGAACCA+TGG 0.634239 2.3:-43989511 None:intergenic
TAACTTGGTTGCAAGAACAT+GGG 0.635065 2.3:-43989388 None:intergenic
GTTGTGAAGCCACTCAAGGG+TGG 0.650129 2.3:+43990110 MS.gene062025:CDS
AGGTATCGATGATGATCTTG+CGG 0.652737 2.3:-43989719 None:intergenic
GTGTGCACCCCAACCACCGT+AGG 0.659434 2.3:-43989739 None:intergenic
ATCAACCTTGATCTTAAGAG+GGG 0.662473 2.3:+43990014 MS.gene062025:CDS
GGTGGTTGGGGTGCACACGG+TGG 0.663588 2.3:+43989744 MS.gene062025:CDS
TCTGGTCGCAAAGCTTGTCG+GGG 0.671297 2.3:-43989011 None:intergenic
GTTAGACCAGCGTCACCATG+AGG 0.685537 2.3:-43989693 None:intergenic
ACCGTAAGAATCAACAAACA+CGG 0.692869 2.3:-43989916 None:intergenic
ACATCTGAATCTGTGAACGA+GGG 0.708400 2.3:+43988985 MS.gene062025:CDS
TGATGCTGATTTCACATGGG+AGG 0.722876 2.3:+43990088 MS.gene062025:CDS
AGATGATGCTGATTTCACAT+GGG 0.723185 2.3:+43990085 MS.gene062025:CDS
GTGCTGTGTTGAGATAAGGA+CGG 0.732434 2.3:-43989535 None:intergenic
ATCATCATCGATACCTACGG+TGG 0.735632 2.3:+43989726 MS.gene062025:CDS
AACTTGCACAAAGACCAACA+TGG 0.753910 2.3:+43989095 MS.gene062025:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTGAGTATTTCAATGACAA+GGG + chr2.3:43989486-43989505 MS.gene062025:CDS 25.0%
! TATTGAGTATTTCAATGACA+AGG + chr2.3:43989485-43989504 MS.gene062025:CDS 25.0%
AGGTTTCTTTCACAATGTTA+AGG - chr2.3:43989968-43989987 None:intergenic 30.0%
ATGTTAAGGATTTCCTTATC+AGG - chr2.3:43989954-43989973 None:intergenic 30.0%
GAAATACTCAATAGTGACTT+GGG - chr2.3:43989478-43989497 None:intergenic 30.0%
TATCAACCTTGATCTTAAGA+GGG + chr2.3:43990013-43990032 MS.gene062025:CDS 30.0%
TGAAATACTCAATAGTGACT+TGG - chr2.3:43989479-43989498 None:intergenic 30.0%
TGTTAAGGATTTCCTTATCA+GGG - chr2.3:43989953-43989972 None:intergenic 30.0%
AAGATCATCATCGATACCTA+CGG + chr2.3:43989723-43989742 MS.gene062025:CDS 35.0%
ACAAAAAGACCTGAGGAAAT+TGG + chr2.3:43989300-43989319 MS.gene062025:CDS 35.0%
ACCGTAAGAATCAACAAACA+CGG - chr2.3:43989919-43989938 None:intergenic 35.0%
ATCAACCTTGATCTTAAGAG+GGG + chr2.3:43990014-43990033 MS.gene062025:CDS 35.0%
CTATCAACCTTGATCTTAAG+AGG + chr2.3:43990012-43990031 MS.gene062025:CDS 35.0%
TAACTTGGTTGCAAGAACAT+GGG - chr2.3:43989391-43989410 None:intergenic 35.0%
TCACAGATTCAGATGTGTAT+AGG - chr2.3:43988981-43989000 None:intergenic 35.0%
TCTGTTGTTCAATGTTGACA+AGG - chr2.3:43989245-43989264 None:intergenic 35.0%
! GACTTTTGTTGGATCTTTAC+CGG - chr2.3:43989781-43989800 None:intergenic 35.0%
! GTTCAAGTTTCCTATGCTAT+CGG + chr2.3:43989876-43989895 MS.gene062025:CDS 35.0%
! TGAAAGAAACCTTTGACTTC+AGG + chr2.3:43989976-43989995 MS.gene062025:CDS 35.0%
!! AGATGATGCTGATTTCACAT+GGG + chr2.3:43990085-43990104 MS.gene062025:CDS 35.0%
!! GCAAAGAGTATTGTTGCTAA+TGG + chr2.3:43989834-43989853 MS.gene062025:CDS 35.0%
!! TCCGTGTTTGTTGATTCTTA+CGG + chr2.3:43989915-43989934 MS.gene062025:CDS 35.0%
!! TTTGTTGATTCTTACGGTAC+CGG + chr2.3:43989921-43989940 MS.gene062025:CDS 35.0%
!! TTTTTGAAGACTGCTGCTTA+TGG + chr2.3:43990050-43990069 MS.gene062025:CDS 35.0%
!!! GGTTTTGTTTCAGATGATGT+TGG + chr2.3:43989195-43989214 MS.gene062025:CDS 35.0%
AACTTGCACAAAGACCAACA+TGG + chr2.3:43989095-43989114 MS.gene062025:CDS 40.0%
AAGATCCAACAAAAGTCGAC+AGG + chr2.3:43989784-43989803 MS.gene062025:CDS 40.0%
ACATCTGAATCTGTGAACGA+GGG + chr2.3:43988985-43989004 MS.gene062025:CDS 40.0%
ACCAAAGACCATAACCATGT+TGG - chr2.3:43989112-43989131 None:intergenic 40.0%
ACCAACATGGTTATGGTCTT+TGG + chr2.3:43989108-43989127 MS.gene062025:CDS 40.0%
AGATTGTTCGTAACACATGC+AGG + chr2.3:43989166-43989185 MS.gene062025:CDS 40.0%
ATCAGCTGCAATTTCATCGT+TGG - chr2.3:43989574-43989593 None:intergenic 40.0%
CACAAAGACCAACATGGTTA+TGG + chr2.3:43989101-43989120 MS.gene062025:CDS 40.0%
CATAAGCTCAGGTGTTTCAT+CGG - chr2.3:43989361-43989380 None:intergenic 40.0%
CATGTTCTTGCAACCAAGTT+AGG + chr2.3:43989390-43989409 MS.gene062025:CDS 40.0%
CCATCTTACAAAAAGACCTG+AGG + chr2.3:43989293-43989312 MS.gene062025:CDS 40.0%
CTAACTTGGTTGCAAGAACA+TGG - chr2.3:43989392-43989411 None:intergenic 40.0%
GAATCAACAAACACGGACAA+TGG - chr2.3:43989912-43989931 None:intergenic 40.0%
TGAACACCTTGAGCAATATC+AGG - chr2.3:43989270-43989289 None:intergenic 40.0%
TTAAGAGGGGTGGAAATAAC+AGG + chr2.3:43990027-43990046 MS.gene062025:CDS 40.0%
TTCCTTATCAGGGATCTTTC+CGG - chr2.3:43989943-43989962 None:intergenic 40.0%
! CCTCAGGTCTTTTTGTAAGA+TGG - chr2.3:43989296-43989315 None:intergenic 40.0%
! GATATTGCTCAAGGTGTTCA+TGG + chr2.3:43989270-43989289 MS.gene062025:CDS 40.0%
! GGAAGATGGTTTTCTCATCA+AGG - chr2.3:43989638-43989657 None:intergenic 40.0%
! GTTGCAAGAACATGGGTTAA+AGG - chr2.3:43989384-43989403 None:intergenic 40.0%
! TCTCATCAAGGTACTTCTCT+GGG - chr2.3:43989626-43989645 None:intergenic 40.0%
! TTCTCATCAAGGTACTTCTC+TGG - chr2.3:43989627-43989646 None:intergenic 40.0%
!! ACTGCTGCTTATGGTCATTT+TGG + chr2.3:43990059-43990078 MS.gene062025:CDS 40.0%
!! AGGTATCGATGATGATCTTG+CGG - chr2.3:43989722-43989741 None:intergenic 40.0%
!! AGGTTGATAGAGATCATTCC+TGG - chr2.3:43990002-43990021 None:intergenic 40.0%
!! GAGATGATGCTGATTTCACA+TGG + chr2.3:43990084-43990103 MS.gene062025:CDS 40.0%
!! TTGCTAATGGACTTGCTAGA+AGG + chr2.3:43989847-43989866 MS.gene062025:CDS 40.0%
AACCTTGATCTTAAGAGGGG+TGG + chr2.3:43990017-43990036 MS.gene062025:CDS 45.0%
AGATAAGGACGGTATGGACA+CGG - chr2.3:43989527-43989546 None:intergenic 45.0%
AGTGAGCTTAGCTCCTAACT+TGG - chr2.3:43989406-43989425 None:intergenic 45.0%
ATCATCATCGATACCTACGG+TGG + chr2.3:43989726-43989745 MS.gene062025:CDS 45.0%
ATCTTCCACTTGAACCCTTC+AGG + chr2.3:43989651-43989670 MS.gene062025:CDS 45.0%
CACATCTGAATCTGTGAACG+AGG + chr2.3:43988984-43989003 MS.gene062025:CDS 45.0%
CAGAGTCCTGATATTGCTCA+AGG + chr2.3:43989261-43989280 MS.gene062025:CDS 45.0%
CATCGTGCTGTGTTGAGATA+AGG - chr2.3:43989542-43989561 None:intergenic 45.0%
CGTAACACATGCAGGAACAT+AGG + chr2.3:43989174-43989193 MS.gene062025:CDS 45.0%
CTCAAGGCAAGCATCAAGAA+CGG - chr2.3:43989046-43989065 None:intergenic 45.0%
CTCACTGAAGTTCGCAAGAA+CGG + chr2.3:43989420-43989439 MS.gene062025:CDS 45.0%
GGTGATCAAGGTCACATGTT+CGG + chr2.3:43989327-43989346 MS.gene062025:CDS 45.0%
GTGATCAAGGTCACATGTTC+GGG + chr2.3:43989328-43989347 MS.gene062025:CDS 45.0%
GTGCTGTGTTGAGATAAGGA+CGG - chr2.3:43989538-43989557 None:intergenic 45.0%
GTGTTGAGATAAGGACGGTA+TGG - chr2.3:43989533-43989552 None:intergenic 45.0%
TACCGGAAAGATCCCTGATA+AGG + chr2.3:43989938-43989957 MS.gene062025:CDS 45.0%
TGAAGGGTTCAAGTGGAAGA+TGG - chr2.3:43989652-43989671 None:intergenic 45.0%
TTCCACCCCTCTTAAGATCA+AGG - chr2.3:43990022-43990041 None:intergenic 45.0%
TTCCATCAGGTCTCAACCAA+GGG - chr2.3:43989452-43989471 None:intergenic 45.0%
TTTCCATCAGGTCTCAACCA+AGG - chr2.3:43989453-43989472 None:intergenic 45.0%
! TCACATGCAACTTTGCTGTC+TGG - chr2.3:43989075-43989094 None:intergenic 45.0%
! TGGGTTAAAGGCATAAGCTC+AGG - chr2.3:43989372-43989391 None:intergenic 45.0%
!! AAGGTACTTCTCTGGGATCA+CGG - chr2.3:43989619-43989638 None:intergenic 45.0%
!! GAAATTGGTGCTGGTGATCA+AGG + chr2.3:43989315-43989334 MS.gene062025:CDS 45.0%
!! TGATGCTGATTTCACATGGG+AGG + chr2.3:43990088-43990107 MS.gene062025:CDS 45.0%
ACAAACACGGACAATGGCTC+TGG - chr2.3:43989906-43989925 None:intergenic 50.0%
AGACCTGAGGAAATTGGTGC+TGG + chr2.3:43989306-43989325 MS.gene062025:CDS 50.0%
ATCGATACCTACGGTGGTTG+GGG + chr2.3:43989732-43989751 MS.gene062025:CDS 50.0%
ATCGATGATGATCTTGCGGC+CGG - chr2.3:43989718-43989737 None:intergenic 50.0%
ATCTGGTCGCAAAGCTTGTC+GGG - chr2.3:43989015-43989034 None:intergenic 50.0%
CAAGAACGGCATCAGAGATC+TGG - chr2.3:43989032-43989051 None:intergenic 50.0%
CATCGATACCTACGGTGGTT+GGG + chr2.3:43989731-43989750 MS.gene062025:CDS 50.0%
CATTCCTGGCCTGAAGTCAA+AGG - chr2.3:43989988-43990007 None:intergenic 50.0%
CCAACAAAAGTCGACAGGAG+TGG + chr2.3:43989789-43989808 MS.gene062025:CDS 50.0%
GAGGTTGTGAAGCCACTCAA+GGG + chr2.3:43990107-43990126 MS.gene062025:CDS 50.0%
GATCTGGTCGCAAAGCTTGT+CGG - chr2.3:43989016-43989035 None:intergenic 50.0%
GCTAACTTTCCACCCTTGAG+TGG - chr2.3:43990122-43990141 None:intergenic 50.0%
TCACCAGCACCAATTTCCTC+AGG - chr2.3:43989312-43989331 None:intergenic 50.0%
TCATCGATACCTACGGTGGT+TGG + chr2.3:43989730-43989749 MS.gene062025:CDS 50.0%
TGCTGTCTGGATCTTGCTCA+AGG - chr2.3:43989062-43989081 None:intergenic 50.0%
! GAAACCTTTGACTTCAGGCC+AGG + chr2.3:43989981-43990000 MS.gene062025:CDS 50.0%
! GTGACTTGGGTCTTTCCATC+AGG - chr2.3:43989465-43989484 None:intergenic 50.0%
!! AGGTACTTCTCTGGGATCAC+GGG - chr2.3:43989618-43989637 None:intergenic 50.0%
!! CTCTGGAACACCGATAGCAT+AGG - chr2.3:43989889-43989908 None:intergenic 50.0%
!! TTTCAATGACAAGGGCGCCA+TGG + chr2.3:43989494-43989513 MS.gene062025:CDS 50.0%
!!! CCACTCCTGTCGACTTTTGT+TGG - chr2.3:43989792-43989811 None:intergenic 50.0%
AACGGCCTGAAGGGTTCAAG+TGG - chr2.3:43989659-43989678 None:intergenic 55.0%
AGGACGGTATGGACACGGAT+CGG - chr2.3:43989522-43989541 None:intergenic 55.0%
ATGGACACGGATCGGAACCA+TGG - chr2.3:43989514-43989533 None:intergenic 55.0%
CCTTCAGGCCGTTTCGTCAT+CGG + chr2.3:43989666-43989685 MS.gene062025:CDS 55.0%
CGATGACGAAACGGCCTGAA+GGG - chr2.3:43989668-43989687 None:intergenic 55.0%
GAGGACCACCGATGACGAAA+CGG - chr2.3:43989677-43989696 None:intergenic 55.0%
GCAAGAACGGAACATGCCCT+TGG + chr2.3:43989433-43989452 MS.gene062025:CDS 55.0%
GGAGGTTGTGAAGCCACTCA+AGG + chr2.3:43990106-43990125 MS.gene062025:CDS 55.0%
GTTAGACCAGCGTCACCATG+AGG - chr2.3:43989696-43989715 None:intergenic 55.0%
GTTGTGAAGCCACTCAAGGG+TGG + chr2.3:43990110-43990129 MS.gene062025:CDS 55.0%
TCTGGTCGCAAAGCTTGTCG+GGG - chr2.3:43989014-43989033 None:intergenic 55.0%
TGCCCTTGGTTGAGACCTGA+TGG + chr2.3:43989447-43989466 MS.gene062025:CDS 55.0%
TTCGTCATCGGTGGTCCTCA+TGG + chr2.3:43989678-43989697 MS.gene062025:CDS 55.0%
! CATGGTGACGCTGGTCTAAC+CGG + chr2.3:43989696-43989715 MS.gene062025:CDS 55.0%
CCGATGACGAAACGGCCTGA+AGG - chr2.3:43989669-43989688 None:intergenic 60.0%
TACGGTGGTTGGGGTGCACA+CGG + chr2.3:43989741-43989760 MS.gene062025:CDS 60.0%
TCAGGCCGTTTCGTCATCGG+TGG + chr2.3:43989669-43989688 MS.gene062025:CDS 60.0%
! CACGGTGGTGGTGCTTTCTC+CGG + chr2.3:43989759-43989778 MS.gene062025:CDS 60.0%
GTGTGCACCCCAACCACCGT+AGG - chr2.3:43989742-43989761 None:intergenic 65.0%
! GGTGGTCCTCATGGTGACGC+TGG + chr2.3:43989687-43989706 MS.gene062025:CDS 65.0%
GGTGGTTGGGGTGCACACGG+TGG + chr2.3:43989744-43989763 MS.gene062025:CDS 70.0%
GGTTGGGGTGCACACGGTGG+TGG + chr2.3:43989747-43989766 MS.gene062025:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 43988961 43990151 43988961 ID=MS.gene062025
chr2.3 mRNA 43988961 43990151 43988961 ID=MS.gene062025.t1;Parent=MS.gene062025
chr2.3 exon 43988961 43990151 43988961 ID=MS.gene062025.t1.exon1;Parent=MS.gene062025.t1
chr2.3 CDS 43988961 43990151 43988961 ID=cds.MS.gene062025.t1;Parent=MS.gene062025.t1
Gene Sequence

>MS.gene062025

ATGGCAACAGAAACTTTCCTATACACATCTGAATCTGTGAACGAGGGACACCCCGACAAGCTTTGCGACCAGATCTCTGATGCCGTTCTTGATGCTTGCCTTGAGCAAGATCCAGACAGCAAAGTTGCATGTGAAACTTGCACAAAGACCAACATGGTTATGGTCTTTGGTGAGATCACAACAAAAGCAAATGTTGACTATGAAAAGATTGTTCGTAACACATGCAGGAACATAGGTTTTGTTTCAGATGATGTTGGTCTTGATGCTGACAACTGCAAAGTCCTTGTCAACATTGAACAACAGAGTCCTGATATTGCTCAAGGTGTTCATGGCCATCTTACAAAAAGACCTGAGGAAATTGGTGCTGGTGATCAAGGTCACATGTTCGGGTATGCTACCGATGAAACACCTGAGCTTATGCCTTTAACCCATGTTCTTGCAACCAAGTTAGGAGCTAAGCTCACTGAAGTTCGCAAGAACGGAACATGCCCTTGGTTGAGACCTGATGGAAAGACCCAAGTCACTATTGAGTATTTCAATGACAAGGGCGCCATGGTTCCGATCCGTGTCCATACCGTCCTTATCTCAACACAGCACGATGAAACTGTGACCAACGATGAAATTGCAGCTGATTTGAAAGAACATGTGATCAAGCCCGTGATCCCAGAGAAGTACCTTGATGAGAAAACCATCTTCCACTTGAACCCTTCAGGCCGTTTCGTCATCGGTGGTCCTCATGGTGACGCTGGTCTAACCGGCCGCAAGATCATCATCGATACCTACGGTGGTTGGGGTGCACACGGTGGTGGTGCTTTCTCCGGTAAAGATCCAACAAAAGTCGACAGGAGTGGAGCTTACATTGTGAGACAAGCTGCAAAGAGTATTGTTGCTAATGGACTTGCTAGAAGGTGCATTGTTCAAGTTTCCTATGCTATCGGTGTTCCAGAGCCATTGTCCGTGTTTGTTGATTCTTACGGTACCGGAAAGATCCCTGATAAGGAAATCCTTAACATTGTGAAAGAAACCTTTGACTTCAGGCCAGGAATGATCTCTATCAACCTTGATCTTAAGAGGGGTGGAAATAACAGGTTTTTGAAGACTGCTGCTTATGGTCATTTTGGTAGAGATGATGCTGATTTCACATGGGAGGTTGTGAAGCCACTCAAGGGTGGAAAGTTAGCCACTGCCTAA
Protein sequence

>MS.gene062025.t1

MATETFLYTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRNTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYFNDKGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILNIVKETFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKGGKLATA