Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06221.t1 | XP_003602807.1 | 98.9 | 369 | 4 | 0 | 1 | 369 | 1 | 369 | 2.70E-209 | 737.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06221.t1 | G7J3W3 | 98.9 | 369 | 4 | 0 | 1 | 369 | 1 | 369 | 2.0e-209 | 737.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055254 | MS.gene06221 | -0.81878 | 1.64E-52 | -1.69E-46 |
| MS.gene055497 | MS.gene06221 | 0.976145 | 2.87E-141 | -1.69E-46 |
| MS.gene055956 | MS.gene06221 | 0.80375 | 3.00E-49 | -1.69E-46 |
| MS.gene057246 | MS.gene06221 | -0.822374 | 2.45E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06221.t1 | MTR_3g099200 | 98.916 | 369 | 4 | 0 | 1 | 369 | 1 | 369 | 0.0 | 763 |
| MS.gene06221.t1 | MTR_3g099200 | 99.689 | 322 | 1 | 0 | 48 | 369 | 1 | 322 | 0.0 | 672 |
| MS.gene06221.t1 | MTR_4g102890 | 72.460 | 374 | 73 | 7 | 1 | 365 | 1 | 353 | 0.0 | 533 |
| MS.gene06221.t1 | MTR_4g102890 | 76.087 | 322 | 54 | 5 | 50 | 365 | 1 | 305 | 9.75e-177 | 493 |
| MS.gene06221.t1 | MTR_4g104060 | 71.067 | 356 | 78 | 6 | 13 | 360 | 6 | 344 | 1.41e-175 | 492 |
| MS.gene06221.t1 | MTR_4g104060 | 71.470 | 347 | 74 | 6 | 22 | 360 | 1 | 330 | 1.73e-172 | 484 |
| MS.gene06221.t1 | MTR_4g102890 | 76.307 | 287 | 45 | 5 | 85 | 365 | 1 | 270 | 1.90e-155 | 438 |
| MS.gene06221.t1 | MTR_8g079020 | 30.198 | 202 | 124 | 5 | 166 | 355 | 181 | 377 | 3.07e-18 | 87.0 |
| MS.gene06221.t1 | MTR_8g079040 | 29.703 | 202 | 125 | 5 | 166 | 355 | 181 | 377 | 3.75e-18 | 86.7 |
| MS.gene06221.t1 | MTR_1g101790 | 29.167 | 192 | 114 | 7 | 181 | 357 | 174 | 358 | 6.61e-17 | 82.8 |
| MS.gene06221.t1 | MTR_1g101790 | 29.167 | 192 | 114 | 7 | 181 | 357 | 174 | 358 | 8.10e-17 | 82.4 |
| MS.gene06221.t1 | MTR_6g089580 | 29.146 | 199 | 122 | 7 | 181 | 367 | 172 | 363 | 2.72e-14 | 74.7 |
| MS.gene06221.t1 | MTR_6g464840 | 29.146 | 199 | 122 | 7 | 181 | 367 | 172 | 363 | 3.50e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06221.t1 | AT2G23520 | 29.208 | 202 | 126 | 5 | 166 | 355 | 182 | 378 | 3.04e-18 | 87.0 |
| MS.gene06221.t1 | AT5G66950 | 32.597 | 181 | 105 | 6 | 187 | 355 | 201 | 376 | 3.68e-18 | 86.7 |
| MS.gene06221.t1 | AT5G51920 | 27.615 | 239 | 140 | 9 | 137 | 357 | 128 | 351 | 3.44e-17 | 83.6 |
| MS.gene06221.t1 | AT4G37100 | 28.713 | 202 | 127 | 6 | 166 | 355 | 186 | 382 | 4.06e-17 | 83.6 |
| MS.gene06221.t1 | AT4G22980 | 28.807 | 243 | 144 | 8 | 138 | 357 | 94 | 330 | 4.79e-15 | 77.0 |
Find 83 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCAACCTTGAATATTC+TGG | 0.214881 | 3.1:+79078459 | None:intergenic |
| TGGTTGGACTTGAGGATTAA+AGG | 0.225306 | 3.1:-79077985 | MS.gene06221:CDS |
| AGAAAGTTACCCTTTCATTA+AGG | 0.229969 | 3.1:-79078103 | MS.gene06221:CDS |
| ATCAAACAGCATGGTCTTAA+AGG | 0.234277 | 3.1:-79078718 | MS.gene06221:intron |
| AGGATTCCTTTCTGACTAAA+AGG | 0.251516 | 3.1:+79077698 | None:intergenic |
| AGGATTGGAATTAGTGTTAC+TGG | 0.261905 | 3.1:+79077735 | None:intergenic |
| TCAACATATTCCATTTCTTT+TGG | 0.272659 | 3.1:+79078504 | None:intergenic |
| AACAAGAAATCCTCATTTAC+TGG | 0.292904 | 3.1:-79078249 | MS.gene06221:CDS |
| ATCTTGGCCCTGTCAGATTC+AGG | 0.305608 | 3.1:+79078306 | None:intergenic |
| CTCAGTTAAGTCAAAACTTT+AGG | 0.307220 | 3.1:-79077960 | MS.gene06221:CDS |
| GAAAGTTACCCTTTCATTAA+GGG | 0.324695 | 3.1:-79078102 | MS.gene06221:CDS |
| GGAAATTCAAGCTCAAAATA+AGG | 0.334997 | 3.1:-79078208 | MS.gene06221:CDS |
| AGGTTCTTCATTGATGATAA+AGG | 0.352472 | 3.1:+79078407 | None:intergenic |
| CTCAAGTCCAACCAAGTCTT+TGG | 0.354864 | 3.1:+79077994 | None:intergenic |
| TGAAGAACCTTTAGATGAAA+AGG | 0.360026 | 3.1:-79078394 | MS.gene06221:CDS |
| TGATTGCTCCAATTGAATCT+TGG | 0.367304 | 3.1:+79078290 | None:intergenic |
| GGATAAGAGAATAAGCCTTT+TGG | 0.370572 | 3.1:+79077919 | None:intergenic |
| TTGATTGAAGGAGATGGAAA+TGG | 0.386242 | 3.1:-79078444 | MS.gene06221:CDS |
| GGTTGGACTTGAGGATTAAA+GGG | 0.390781 | 3.1:-79077984 | MS.gene06221:CDS |
| TCCAATCACACCAAAAGAAA+TGG | 0.396737 | 3.1:-79078514 | MS.gene06221:CDS |
| AGACTACAGATCACAAAATC+AGG | 0.400820 | 3.1:+79077775 | None:intergenic |
| GCAAGTGATTCTTGAAGGAT+TGG | 0.425657 | 3.1:+79077720 | None:intergenic |
| ATCTTCTTCTTGATCAAGAA+TGG | 0.426120 | 3.1:+79078065 | None:intergenic |
| CAGAAGCTCACAGGAACAAT+TGG | 0.426312 | 3.1:-79077864 | MS.gene06221:CDS |
| GATTCTTCTTCATATACATT+TGG | 0.428676 | 3.1:-79078339 | MS.gene06221:CDS |
| GATGCCTCTGCTTATGTAGT+TGG | 0.445059 | 3.1:-79077829 | MS.gene06221:CDS |
| CTTCTGAAATTTCATGCTCC+TGG | 0.446468 | 3.1:+79078955 | None:intergenic |
| CAAAGTATCCAGAATATTCA+AGG | 0.446957 | 3.1:-79078467 | MS.gene06221:CDS |
| CACATCAGCTGCTTCATCTC+AGG | 0.449866 | 3.1:-79077671 | MS.gene06221:CDS |
| TGATTGAAGGAGATGGAAAT+GGG | 0.449991 | 3.1:-79078443 | MS.gene06221:CDS |
| AAAAGGCAAGTGATTCTTGA+AGG | 0.453246 | 3.1:+79077715 | None:intergenic |
| CAAAGACTTGGTTGGACTTG+AGG | 0.454098 | 3.1:-79077993 | MS.gene06221:CDS |
| TCCAACCAAGTCTTTGGTGC+AGG | 0.454333 | 3.1:+79078000 | None:intergenic |
| TACCTTGTTCTCTTCACTCC+AGG | 0.458116 | 3.1:-79078153 | MS.gene06221:CDS |
| AGATTCAATTGGAGCAATCA+AGG | 0.463937 | 3.1:-79078287 | MS.gene06221:CDS |
| TGACAGGGCCAAGATTCAAT+TGG | 0.465387 | 3.1:-79078298 | MS.gene06221:CDS |
| TCCGCGAATTCGATATTAGA+TGG | 0.471848 | 3.1:-79078542 | MS.gene06221:CDS |
| ATCATAGCATCCTTGTAGCC+TGG | 0.481377 | 3.1:+79078135 | None:intergenic |
| TCTCTTCACTCCAGGCTACA+AGG | 0.485295 | 3.1:-79078145 | MS.gene06221:CDS |
| ACCATCTAATATCGAATTCG+CGG | 0.487526 | 3.1:+79078541 | None:intergenic |
| GAAGAACCTTTAGATGAAAA+GGG | 0.490344 | 3.1:-79078393 | MS.gene06221:CDS |
| AGTAGTTTCCCTTAATGAAA+GGG | 0.500410 | 3.1:+79078094 | None:intergenic |
| CCCTGCACCAAAGACTTGGT+TGG | 0.503875 | 3.1:-79078001 | MS.gene06221:CDS |
| TTATCCCTGCACCAAAGACT+TGG | 0.509762 | 3.1:-79078005 | MS.gene06221:CDS |
| GTAGTCTACCTGAATCTGAC+AGG | 0.512389 | 3.1:-79078314 | MS.gene06221:CDS |
| TGGAAGTTTCATATCGATCC+CGG | 0.516056 | 3.1:-79078229 | MS.gene06221:CDS |
| CTTATGTTAGGTAACATATC+CGG | 0.517913 | 3.1:-79078811 | MS.gene06221:intron |
| GAATTCGATATTAGATGGTC+AGG | 0.521252 | 3.1:-79078537 | MS.gene06221:CDS |
| TAGTAGTTTCCCTTAATGAA+AGG | 0.521318 | 3.1:+79078093 | None:intergenic |
| GAATATTCAAGGTTGATTGA+AGG | 0.523778 | 3.1:-79078456 | MS.gene06221:CDS |
| TCAAGGTTGATTGAAGGAGA+TGG | 0.526868 | 3.1:-79078450 | MS.gene06221:CDS |
| TAAGTCAAAACTTTAGGAGG+AGG | 0.533314 | 3.1:-79077954 | MS.gene06221:CDS |
| GCTTCAGCTATGATGTGAGC+TGG | 0.534188 | 3.1:+79078576 | None:intergenic |
| TATGAAACTTCCAGTAAATG+AGG | 0.537711 | 3.1:+79078239 | None:intergenic |
| GAAGTCAAGGACATTAAGAA+AGG | 0.539164 | 3.1:-79078774 | MS.gene06221:CDS |
| AGGTGTAAGATCAGTCCAAA+AGG | 0.543212 | 3.1:-79077934 | MS.gene06221:CDS |
| GAAGAAGAATCTCTAGGACT+AGG | 0.547253 | 3.1:+79078351 | None:intergenic |
| ATGCTAGTGGAACAATGCAT+TGG | 0.548958 | 3.1:-79077891 | MS.gene06221:CDS |
| CTACAAGGATGCTATGATGT+TGG | 0.551390 | 3.1:-79078130 | MS.gene06221:CDS |
| GAGCATGAAATTTCAGAAGC+AGG | 0.554400 | 3.1:-79078951 | MS.gene06221:CDS |
| AGTTAAGTCAAAACTTTAGG+AGG | 0.555539 | 3.1:-79077957 | MS.gene06221:CDS |
| CTAGGACTAGGAGTCCCTCT+TGG | 0.556097 | 3.1:+79078363 | None:intergenic |
| ATTGTTCCACTAGCATCTGC+TGG | 0.557819 | 3.1:+79077898 | None:intergenic |
| CTCTGCTTATGTAGTTGGAA+AGG | 0.565206 | 3.1:-79077824 | MS.gene06221:CDS |
| GTATATGAAGAAGAATCTCT+AGG | 0.565470 | 3.1:+79078345 | None:intergenic |
| TAGTATGGGAACAAATAGCC+AGG | 0.572151 | 3.1:-79078973 | None:intergenic |
| TGAAGCAGCTGATGTGTCAA+AGG | 0.574148 | 3.1:+79077678 | None:intergenic |
| AAGGATGCTATGATGTTGGT+AGG | 0.578373 | 3.1:-79078126 | MS.gene06221:CDS |
| ATTGGATCTCAGAAGCTCAC+AGG | 0.582954 | 3.1:-79077873 | MS.gene06221:CDS |
| TCTTATCCAGCAGATGCTAG+TGG | 0.585875 | 3.1:-79077904 | MS.gene06221:CDS |
| GAAAAGGGAAAGTCACCAAG+AGG | 0.596956 | 3.1:-79078378 | MS.gene06221:CDS |
| CCAACCAAGTCTTTGGTGCA+GGG | 0.603770 | 3.1:+79078001 | None:intergenic |
| GGTTGTAGAAAATGAAGTCA+AGG | 0.620310 | 3.1:-79078787 | MS.gene06221:CDS |
| AGCCTGGAGTGAAGAGAACA+AGG | 0.633075 | 3.1:+79078151 | None:intergenic |
| GACTACAGATCACAAAATCA+GGG | 0.633592 | 3.1:+79077776 | None:intergenic |
| ATGTTAGGTAACATATCCGG+AGG | 0.642612 | 3.1:-79078808 | MS.gene06221:intron |
| CTTATGTAGTTGGAAAGGAT+CGG | 0.648072 | 3.1:-79077819 | MS.gene06221:CDS |
| AATTTCAGAAGCAGGATCTG+AGG | 0.653221 | 3.1:-79078943 | MS.gene06221:intron |
| CTTTCCAACTACATAAGCAG+AGG | 0.664110 | 3.1:+79077825 | None:intergenic |
| AAGTTGCAAATCAAACAGCA+TGG | 0.672925 | 3.1:-79078727 | MS.gene06221:CDS |
| AAAAGGGAAAGTCACCAAGA+GGG | 0.676816 | 3.1:-79078377 | MS.gene06221:CDS |
| TAGTCTACCTGAATCTGACA+GGG | 0.688795 | 3.1:-79078313 | MS.gene06221:CDS |
| TACAGATCACAAAATCAGGG+CGG | 0.767436 | 3.1:+79077779 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAATCACACATA+AGG | + | chr3.1:79077752-79077771 | None:intergenic | 15.0% |
| !! | ATACACTTTAATCTTATGTT+AGG | - | chr3.1:79077806-79077825 | MS.gene06221:CDS | 20.0% |
| !!! | TCAAGAAGAAGATTTTATAA+AGG | - | chr3.1:79078574-79078593 | MS.gene06221:CDS | 20.0% |
| ! | ATGAATTGAAGCTGAAAAAA+TGG | - | chr3.1:79077992-79078011 | MS.gene06221:CDS | 25.0% |
| ! | CCAACAAACAAATTAAAAGT+TGG | + | chr3.1:79077950-79077969 | None:intergenic | 25.0% |
| ! | GATTCTTCTTCATATACATT+TGG | - | chr3.1:79078290-79078309 | MS.gene06221:CDS | 25.0% |
| ! | TGAATTGTATCAAAACAGAA+AGG | - | chr3.1:79078017-79078036 | MS.gene06221:CDS | 25.0% |
| !! | TCAACATATTCCATTTCTTT+TGG | + | chr3.1:79078128-79078147 | None:intergenic | 25.0% |
| !!! | AAAGGAATTTGCTTGTTTTA+AGG | - | chr3.1:79078592-79078611 | MS.gene06221:CDS | 25.0% |
| !!! | AATAAGGTTTTGAAGCATTA+CGG | - | chr3.1:79078437-79078456 | MS.gene06221:CDS | 25.0% |
| !!! | CCAACTTTTAATTTGTTTGT+TGG | - | chr3.1:79077947-79077966 | MS.gene06221:CDS | 25.0% |
| !!! | TTATTTTGAGCTTGAATTTC+CGG | + | chr3.1:79078422-79078441 | None:intergenic | 25.0% |
| !!! | TTTTTTCAGCTTCAATTCAT+TGG | + | chr3.1:79077992-79078011 | None:intergenic | 25.0% |
| AACAAGAAATCCTCATTTAC+TGG | - | chr3.1:79078380-79078399 | MS.gene06221:CDS | 30.0% | |
| AGAAAGTTACCCTTTCATTA+AGG | - | chr3.1:79078526-79078545 | MS.gene06221:CDS | 30.0% | |
| AGTAGTTTCCCTTAATGAAA+GGG | + | chr3.1:79078538-79078557 | None:intergenic | 30.0% | |
| AGTTAAGTCAAAACTTTAGG+AGG | - | chr3.1:79078672-79078691 | MS.gene06221:intron | 30.0% | |
| ATCTTCTTCTTGATCAAGAA+TGG | + | chr3.1:79078567-79078586 | None:intergenic | 30.0% | |
| CTCAGTTAAGTCAAAACTTT+AGG | - | chr3.1:79078669-79078688 | MS.gene06221:intron | 30.0% | |
| CTTATGTTAGGTAACATATC+CGG | - | chr3.1:79077818-79077837 | MS.gene06221:CDS | 30.0% | |
| GAAAGTTACCCTTTCATTAA+GGG | - | chr3.1:79078527-79078546 | MS.gene06221:CDS | 30.0% | |
| GAAGAACCTTTAGATGAAAA+GGG | - | chr3.1:79078236-79078255 | MS.gene06221:CDS | 30.0% | |
| GGAAATTCAAGCTCAAAATA+AGG | - | chr3.1:79078421-79078440 | MS.gene06221:CDS | 30.0% | |
| GTATATGAAGAAGAATCTCT+AGG | + | chr3.1:79078287-79078306 | None:intergenic | 30.0% | |
| TAGTAGTTTCCCTTAATGAA+AGG | + | chr3.1:79078539-79078558 | None:intergenic | 30.0% | |
| TATGAAACTTCCAGTAAATG+AGG | + | chr3.1:79078393-79078412 | None:intergenic | 30.0% | |
| TCAATCAACCTTGAATATTC+TGG | + | chr3.1:79078173-79078192 | None:intergenic | 30.0% | |
| TGAAGAACCTTTAGATGAAA+AGG | - | chr3.1:79078235-79078254 | MS.gene06221:CDS | 30.0% | |
| ! | AGGTTCTTCATTGATGATAA+AGG | + | chr3.1:79078225-79078244 | None:intergenic | 30.0% |
| ! | CAAAGTATCCAGAATATTCA+AGG | - | chr3.1:79078162-79078181 | MS.gene06221:CDS | 30.0% |
| ! | CTGAATTATTGAAGCATTAG+AGG | + | chr3.1:79077778-79077797 | None:intergenic | 30.0% |
| ! | GAATATTCAAGGTTGATTGA+AGG | - | chr3.1:79078173-79078192 | MS.gene06221:CDS | 30.0% |
| !! | TATTTTGAGCTTGAATTTCC+GGG | + | chr3.1:79078421-79078440 | None:intergenic | 30.0% |
| AAAAGGCAAGTGATTCTTGA+AGG | + | chr3.1:79078917-79078936 | None:intergenic | 35.0% | |
| AAGTTGCAAATCAAACAGCA+TGG | - | chr3.1:79077902-79077921 | MS.gene06221:CDS | 35.0% | |
| ACCATCTAATATCGAATTCG+CGG | + | chr3.1:79078091-79078110 | None:intergenic | 35.0% | |
| AGACTACAGATCACAAAATC+AGG | + | chr3.1:79078857-79078876 | None:intergenic | 35.0% | |
| AGATTCAATTGGAGCAATCA+AGG | - | chr3.1:79078342-79078361 | MS.gene06221:CDS | 35.0% | |
| AGGATTCCTTTCTGACTAAA+AGG | + | chr3.1:79078934-79078953 | None:intergenic | 35.0% | |
| AGGATTGGAATTAGTGTTAC+TGG | + | chr3.1:79078897-79078916 | None:intergenic | 35.0% | |
| CTTATGTAGTTGGAAAGGAT+CGG | - | chr3.1:79078810-79078829 | MS.gene06221:intron | 35.0% | |
| GAAGTCAAGGACATTAAGAA+AGG | - | chr3.1:79077855-79077874 | MS.gene06221:CDS | 35.0% | |
| GAATTCGATATTAGATGGTC+AGG | - | chr3.1:79078092-79078111 | MS.gene06221:CDS | 35.0% | |
| GACTACAGATCACAAAATCA+GGG | + | chr3.1:79078856-79078875 | None:intergenic | 35.0% | |
| GGTTGTAGAAAATGAAGTCA+AGG | - | chr3.1:79077842-79077861 | MS.gene06221:CDS | 35.0% | |
| TCCAATCACACCAAAAGAAA+TGG | - | chr3.1:79078115-79078134 | MS.gene06221:CDS | 35.0% | |
| TGATTGAAGGAGATGGAAAT+GGG | - | chr3.1:79078186-79078205 | MS.gene06221:CDS | 35.0% | |
| TGATTGCTCCAATTGAATCT+TGG | + | chr3.1:79078342-79078361 | None:intergenic | 35.0% | |
| TTGATTGAAGGAGATGGAAA+TGG | - | chr3.1:79078185-79078204 | MS.gene06221:CDS | 35.0% | |
| ! | ACTTCATTTTCTACAACCTC+CGG | + | chr3.1:79077840-79077859 | None:intergenic | 35.0% |
| ! | ATCAAACAGCATGGTCTTAA+AGG | - | chr3.1:79077911-79077930 | MS.gene06221:CDS | 35.0% |
| ! | GACTTTCCCTTTTCATCTAA+AGG | + | chr3.1:79078245-79078264 | None:intergenic | 35.0% |
| ! | GGATAAGAGAATAAGCCTTT+TGG | + | chr3.1:79078713-79078732 | None:intergenic | 35.0% |
| ! | TAAGTCAAAACTTTAGGAGG+AGG | - | chr3.1:79078675-79078694 | MS.gene06221:intron | 35.0% |
| !! | TCCATTTCTTTTGGTGTGAT+TGG | + | chr3.1:79078119-79078138 | None:intergenic | 35.0% |
| !!! | TGCTTGTTTTAAGGAGTCAA+AGG | - | chr3.1:79078601-79078620 | MS.gene06221:intron | 35.0% |
| AAAAGGGAAAGTCACCAAGA+GGG | - | chr3.1:79078252-79078271 | MS.gene06221:CDS | 40.0% | |
| AAGGATGCTATGATGTTGGT+AGG | - | chr3.1:79078503-79078522 | MS.gene06221:CDS | 40.0% | |
| AATTTCAGAAGCAGGATCTG+AGG | - | chr3.1:79077686-79077705 | MS.gene06221:CDS | 40.0% | |
| AGGTGTAAGATCAGTCCAAA+AGG | - | chr3.1:79078695-79078714 | MS.gene06221:intron | 40.0% | |
| ATGCTAGTGGAACAATGCAT+TGG | - | chr3.1:79078738-79078757 | MS.gene06221:CDS | 40.0% | |
| ATGTTAGGTAACATATCCGG+AGG | - | chr3.1:79077821-79077840 | MS.gene06221:CDS | 40.0% | |
| CTACAAGGATGCTATGATGT+TGG | - | chr3.1:79078499-79078518 | MS.gene06221:CDS | 40.0% | |
| CTCTGCTTATGTAGTTGGAA+AGG | - | chr3.1:79078805-79078824 | MS.gene06221:intron | 40.0% | |
| CTTTCCAACTACATAAGCAG+AGG | + | chr3.1:79078807-79078826 | None:intergenic | 40.0% | |
| GAGCATGAAATTTCAGAAGC+AGG | - | chr3.1:79077678-79077697 | MS.gene06221:CDS | 40.0% | |
| GCAAGTGATTCTTGAAGGAT+TGG | + | chr3.1:79078912-79078931 | None:intergenic | 40.0% | |
| GGTTGGACTTGAGGATTAAA+GGG | - | chr3.1:79078645-79078664 | MS.gene06221:intron | 40.0% | |
| TACAGATCACAAAATCAGGG+CGG | + | chr3.1:79078853-79078872 | None:intergenic | 40.0% | |
| TAGTCTACCTGAATCTGACA+GGG | - | chr3.1:79078316-79078335 | MS.gene06221:CDS | 40.0% | |
| TCCGCGAATTCGATATTAGA+TGG | - | chr3.1:79078087-79078106 | MS.gene06221:CDS | 40.0% | |
| TGGAAGTTTCATATCGATCC+CGG | - | chr3.1:79078400-79078419 | MS.gene06221:CDS | 40.0% | |
| TGGTTGGACTTGAGGATTAA+AGG | - | chr3.1:79078644-79078663 | MS.gene06221:intron | 40.0% | |
| ! | CACTTGCCTTTTAGTCAGAA+AGG | - | chr3.1:79078925-79078944 | MS.gene06221:intron | 40.0% |
| ! | TCAAGGTTGATTGAAGGAGA+TGG | - | chr3.1:79078179-79078198 | MS.gene06221:CDS | 40.0% |
| !! | CTTCTGAAATTTCATGCTCC+TGG | + | chr3.1:79077677-79077696 | None:intergenic | 40.0% |
| !! | GAAGAAGAATCTCTAGGACT+AGG | + | chr3.1:79078281-79078300 | None:intergenic | 40.0% |
| ATCATAGCATCCTTGTAGCC+TGG | + | chr3.1:79078497-79078516 | None:intergenic | 45.0% | |
| ATTGGATCTCAGAAGCTCAC+AGG | - | chr3.1:79078756-79078775 | MS.gene06221:CDS | 45.0% | |
| ATTGTTCCACTAGCATCTGC+TGG | + | chr3.1:79078734-79078753 | None:intergenic | 45.0% | |
| CAGAAGCTCACAGGAACAAT+TGG | - | chr3.1:79078765-79078784 | MS.gene06221:CDS | 45.0% | |
| CTCAAGTCCAACCAAGTCTT+TGG | + | chr3.1:79078638-79078657 | None:intergenic | 45.0% | |
| GAAAAGGGAAAGTCACCAAG+AGG | - | chr3.1:79078251-79078270 | MS.gene06221:CDS | 45.0% | |
| GATGCCTCTGCTTATGTAGT+TGG | - | chr3.1:79078800-79078819 | MS.gene06221:CDS | 45.0% | |
| GTAGTCTACCTGAATCTGAC+AGG | - | chr3.1:79078315-79078334 | MS.gene06221:CDS | 45.0% | |
| TACCTTGTTCTCTTCACTCC+AGG | - | chr3.1:79078476-79078495 | MS.gene06221:CDS | 45.0% | |
| TCTTATCCAGCAGATGCTAG+TGG | - | chr3.1:79078725-79078744 | MS.gene06221:CDS | 45.0% | |
| TGAAGCAGCTGATGTGTCAA+AGG | + | chr3.1:79078954-79078973 | None:intergenic | 45.0% | |
| TGACAGGGCCAAGATTCAAT+TGG | - | chr3.1:79078331-79078350 | MS.gene06221:CDS | 45.0% | |
| TTATCCCTGCACCAAAGACT+TGG | - | chr3.1:79078624-79078643 | MS.gene06221:intron | 45.0% | |
| ! | CAAAGACTTGGTTGGACTTG+AGG | - | chr3.1:79078636-79078655 | MS.gene06221:intron | 45.0% |
| AGCCTGGAGTGAAGAGAACA+AGG | + | chr3.1:79078481-79078500 | None:intergenic | 50.0% | |
| ATCTTGGCCCTGTCAGATTC+AGG | + | chr3.1:79078326-79078345 | None:intergenic | 50.0% | |
| CACATCAGCTGCTTCATCTC+AGG | - | chr3.1:79078958-79078977 | MS.gene06221:CDS | 50.0% | |
| GCTTCAGCTATGATGTGAGC+TGG | + | chr3.1:79078056-79078075 | None:intergenic | 50.0% | |
| TCTCTTCACTCCAGGCTACA+AGG | - | chr3.1:79078484-79078503 | MS.gene06221:CDS | 50.0% | |
| ! | CCAACCAAGTCTTTGGTGCA+GGG | + | chr3.1:79078631-79078650 | None:intergenic | 50.0% |
| ! | TCCAACCAAGTCTTTGGTGC+AGG | + | chr3.1:79078632-79078651 | None:intergenic | 50.0% |
| CTAGGACTAGGAGTCCCTCT+TGG | + | chr3.1:79078269-79078288 | None:intergenic | 55.0% | |
| ! | CCCTGCACCAAAGACTTGGT+TGG | - | chr3.1:79078628-79078647 | MS.gene06221:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 79077660 | 79078991 | 79077660 | ID=MS.gene06221 |
| chr3.1 | mRNA | 79077660 | 79078991 | 79077660 | ID=MS.gene06221.t1;Parent=MS.gene06221 |
| chr3.1 | exon | 79078944 | 79078991 | 79078944 | ID=MS.gene06221.t1.exon1;Parent=MS.gene06221.t1 |
| chr3.1 | CDS | 79078944 | 79078991 | 79078944 | ID=cds.MS.gene06221.t1;Parent=MS.gene06221.t1 |
| chr3.1 | exon | 79078719 | 79078823 | 79078719 | ID=MS.gene06221.t1.exon2;Parent=MS.gene06221.t1 |
| chr3.1 | CDS | 79078719 | 79078823 | 79078719 | ID=cds.MS.gene06221.t1;Parent=MS.gene06221.t1 |
| chr3.1 | exon | 79077660 | 79078616 | 79077660 | ID=MS.gene06221.t1.exon3;Parent=MS.gene06221.t1 |
| chr3.1 | CDS | 79077660 | 79078616 | 79077660 | ID=cds.MS.gene06221.t1;Parent=MS.gene06221.t1 |
| Gene Sequence |
| Protein sequence |
