AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055956


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055956.t1 MTR_7g093950 99.429 350 2 0 1 350 1 350 0.0 722
MS.gene055956.t1 MTR_1g089310 84.000 350 50 4 1 350 17 360 0.0 609
MS.gene055956.t1 MTR_1g089310 84.000 350 50 4 1 350 1 344 0.0 608
MS.gene055956.t1 MTR_1g082210 70.370 351 96 6 1 350 1 344 0.0 509
MS.gene055956.t1 MTR_6g065110 40.663 332 188 5 17 347 12 335 6.54e-80 248
MS.gene055956.t1 MTR_6g065400 38.596 342 201 4 7 347 1 334 1.53e-79 247
MS.gene055956.t1 MTR_6g065120 40.764 314 178 4 35 347 30 336 3.45e-79 246
MS.gene055956.t1 MTR_6g065370 37.168 339 204 4 10 347 4 334 6.50e-74 232
MS.gene055956.t1 MTR_6g065270 35.294 340 215 4 9 347 1 336 1.64e-72 229
MS.gene055956.t1 MTR_6g065430 36.578 339 197 5 11 346 4 327 3.70e-64 207
MS.gene055956.t1 MTR_6g065340 36.624 314 172 6 36 347 41 329 1.73e-62 202
MS.gene055956.t1 MTR_4g050140 34.797 296 160 8 61 346 43 315 2.32e-42 150
MS.gene055956.t1 MTR_7g406880 33.226 310 171 11 61 347 54 350 6.37e-39 141
MS.gene055956.t1 MTR_7g107040 35.345 232 136 6 106 327 69 296 1.57e-37 137
MS.gene055956.t1 MTR_1g111280 32.432 296 161 8 69 346 68 342 1.57e-37 138
MS.gene055956.t1 MTR_1g012430 31.579 304 179 9 63 346 13 307 1.51e-36 134
MS.gene055956.t1 MTR_1g102170 37.143 210 111 5 78 283 83 275 4.28e-36 134
MS.gene055956.t1 MTR_6g464510 32.645 242 143 5 32 268 22 248 7.26e-36 133
MS.gene055956.t1 MTR_8g035540 32.432 259 158 5 99 346 64 316 1.40e-35 132
MS.gene055956.t1 MTR_6g464320 32.959 267 162 5 69 329 54 309 6.10e-35 130
MS.gene055956.t1 MTR_7g056207 34.749 259 143 8 106 350 107 353 8.74e-35 130
MS.gene055956.t1 MTR_0007s0520 34.496 258 155 8 100 347 72 325 2.95e-34 129
MS.gene055956.t1 MTR_6g464280 34.568 243 142 5 78 314 62 293 3.55e-34 128
MS.gene055956.t1 MTR_3g012440 33.750 240 147 5 97 328 79 314 4.73e-34 128
MS.gene055956.t1 MTR_4g086510 31.935 310 172 11 53 347 33 318 1.12e-33 127
MS.gene055956.t1 MTR_6g022710 30.903 288 145 6 80 329 146 417 5.46e-33 127
MS.gene055956.t1 MTR_6g464120 32.787 244 138 7 32 268 23 247 1.99e-32 127
MS.gene055956.t1 MTR_4g086480 30.469 256 155 8 103 346 74 318 2.75e-32 123
MS.gene055956.t1 MTR_1g102160 38.596 171 96 3 106 268 78 247 1.07e-31 122
MS.gene055956.t1 MTR_3g450680 31.104 299 172 12 70 347 47 332 1.38e-31 121
MS.gene055956.t1 MTR_8g035520 29.730 259 163 6 101 347 74 325 5.43e-31 120
MS.gene055956.t1 MTR_4g086470 33.953 215 122 6 106 311 76 279 3.63e-30 117
MS.gene055956.t1 MTR_8g035500 28.435 313 190 9 25 327 8 296 6.94e-30 117
MS.gene055956.t1 MTR_3g101420 30.645 310 174 12 53 347 32 315 5.79e-29 114
MS.gene055956.t1 MTR_8g040860 28.228 333 197 14 32 347 22 329 5.13e-27 109
MS.gene055956.t1 MTR_4g086540 29.949 197 116 5 38 231 31 208 5.43e-26 106
MS.gene055956.t1 MTR_5g005920 29.042 334 190 15 25 340 9 313 5.62e-26 106
MS.gene055956.t1 MTR_1g105020 29.139 302 168 12 38 320 21 295 2.08e-24 102
MS.gene055956.t1 MTR_7g051020 30.743 296 166 11 69 347 53 326 6.38e-24 100
MS.gene055956.t1 MTR_5g005900 27.124 306 171 13 23 308 12 285 3.45e-23 98.6
MS.gene055956.t1 MTR_5g005850 26.748 329 195 13 38 346 26 328 1.00e-21 94.7
MS.gene055956.t1 MTR_1g104933 31.373 255 136 9 69 311 51 278 9.96e-21 91.7
MS.gene055956.t1 MTR_1g104930 30.888 259 136 10 69 311 53 284 3.02e-20 90.5
MS.gene055956.t1 MTR_0007s0480 32.941 170 103 6 186 347 5 171 2.85e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055956.t1 AT3G63010 72.334 347 91 3 1 347 1 342 0.0 540
MS.gene055956.t1 AT5G27320 68.946 351 100 6 1 350 1 343 1.77e-177 496
MS.gene055956.t1 AT3G05120 66.382 351 111 5 1 350 1 345 3.74e-172 482
MS.gene055956.t1 AT5G23530 35.398 339 190 8 15 347 12 327 4.43e-63 204
MS.gene055956.t1 AT5G16080 32.026 306 173 7 59 349 59 344 1.37e-43 154
MS.gene055956.t1 AT1G68620 35.656 244 131 6 69 306 65 288 2.21e-42 150
MS.gene055956.t1 AT5G62180 30.597 268 170 5 32 294 15 271 1.28e-39 143
MS.gene055956.t1 AT2G45600 32.895 228 141 2 106 322 66 292 2.75e-36 134
MS.gene055956.t1 AT5G14310 32.707 266 134 5 106 329 151 413 9.33e-35 132
MS.gene055956.t1 AT2G03550 31.481 324 176 12 39 347 19 311 1.04e-32 124
MS.gene055956.t1 AT1G19190 35.439 285 141 14 53 321 30 287 1.33e-32 124
MS.gene055956.t1 AT1G47480 29.283 321 195 11 33 347 16 310 1.39e-32 124
MS.gene055956.t1 AT5G06570 35.338 266 155 9 96 347 64 326 5.53e-32 122
MS.gene055956.t1 AT5G06570 35.338 266 155 9 96 347 64 326 5.53e-32 122
MS.gene055956.t1 AT5G06570 35.338 266 155 9 96 347 79 341 6.97e-32 122
MS.gene055956.t1 AT5G06570 35.338 266 155 9 96 347 79 341 6.97e-32 122
MS.gene055956.t1 AT2G45610 29.066 289 178 6 69 347 53 324 1.99e-31 121
MS.gene055956.t1 AT3G27320 28.940 349 169 10 56 329 51 395 2.54e-30 120
MS.gene055956.t1 AT3G27320 30.952 294 143 7 78 329 152 427 9.12e-30 119
MS.gene055956.t1 AT3G48690 33.208 265 143 11 53 302 30 275 2.01e-27 110
MS.gene055956.t1 AT3G48700 31.034 319 178 14 50 346 27 325 2.97e-27 110
MS.gene055956.t1 AT1G49650 32.090 268 154 8 53 311 86 334 2.05e-26 108
MS.gene055956.t1 AT1G49640 29.183 257 154 9 56 308 40 272 1.67e-24 102
MS.gene055956.t1 AT1G49660 30.303 264 159 6 53 308 30 276 1.32e-23 99.8

Find 72 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTTCTGTTGTACTTAA+TGG 0.166515 7.4:+15157959 None:intergenic
TGGCTTATGTGGATGGTTTA+AGG 0.186814 7.4:-15157352 MS.gene055956:CDS
GTGGATGGTTTAAGGAATTT+TGG 0.215905 7.4:-15157344 MS.gene055956:CDS
TGATCATTTCTATTGCCTTA+TGG 0.245202 7.4:-15157258 MS.gene055956:CDS
ATTCTTCTTCATCCTTTGTT+TGG 0.284217 7.4:-15157602 MS.gene055956:CDS
GCAGAAGGAATTGAAGTGTT+AGG 0.327890 7.4:-15157629 MS.gene055956:CDS
AAAAGTCTTGTTTGTGTGGC+TGG 0.337676 7.4:-15157401 MS.gene055956:CDS
CAATAGAAATGATCATTATT+AGG 0.341519 7.4:+15157266 None:intergenic
TGGTCTCTATCTTCACCTTC+TGG 0.343587 7.4:+15157488 None:intergenic
AATGGGTGAAGTCAAGAAAA+TGG 0.346501 7.4:-15157754 MS.gene055956:CDS
GATTCTGAAATGAGATTAGA+TGG 0.348082 7.4:-15157563 MS.gene055956:CDS
TCTTGTTTGTGTGGCTGGTT+TGG 0.349537 7.4:-15157396 MS.gene055956:CDS
TACAAGATCGTGATTGGTAT+TGG 0.350184 7.4:-15157523 MS.gene055956:CDS
TACCTTAAGGAGGCTACTAT+TGG 0.351911 7.4:-15157302 MS.gene055956:CDS
TGTTAAACTTCTTTACCTTA+AGG 0.362269 7.4:-15157315 MS.gene055956:CDS
CTTCTTCATCCTTTGTTTGG+TGG 0.365813 7.4:-15157599 MS.gene055956:CDS
AAGTAATAGTATTAACAGTT+AGG 0.372219 7.4:+15157212 None:intergenic
TTCAGAAAATGAATCTCAAT+GGG 0.401908 7.4:-15158002 MS.gene055956:CDS
AGTTCTTGATTTCCTCCATA+AGG 0.402550 7.4:+15157243 None:intergenic
TTAGATTACAAGATCGTGAT+TGG 0.411360 7.4:-15157529 MS.gene055956:CDS
AGTCCCGGCAAATGCTATTC+CGG 0.421368 7.4:-15158098 MS.gene055956:CDS
AACCAATAGTAGCCTCCTTA+AGG 0.425272 7.4:+15157300 None:intergenic
TTGTAAAGCTGCTGTTGTTT+CGG 0.428335 7.4:-15157843 MS.gene055956:CDS
CACCCTGCTTGTAACCCGTT+TGG 0.430827 7.4:-15157467 MS.gene055956:CDS
TGTAACCCGTTTGGTCCAAA+AGG 0.441552 7.4:-15157458 MS.gene055956:CDS
AAAGTTTGTGTTTACATGGC+AGG 0.441870 7.4:-15157710 MS.gene055956:CDS
TACATGGCAGGTGATAGTTC+TGG 0.444051 7.4:-15157698 MS.gene055956:CDS
CAGAAGGAATTGAAGTGTTA+GGG 0.454064 7.4:-15157628 MS.gene055956:CDS
CTTCAGAAAATGAATCTCAA+TGG 0.456710 7.4:-15158003 MS.gene055956:CDS
AGATTGGCAATTGGCTTATG+TGG 0.475777 7.4:-15157363 MS.gene055956:CDS
GGTTAATTACCGACGATCAC+CGG 0.491592 7.4:-15157822 MS.gene055956:CDS
GGACCAAACGGGTTACAAGC+AGG 0.492003 7.4:+15157464 None:intergenic
ATAAGAACATATGTATTCAA+TGG 0.496984 7.4:+15158205 None:intergenic
AAGTCAACCTCAGTGAATCC+AGG 0.499269 7.4:-15158602 MS.gene055956:CDS
GTAACCCGTTTGGTCCAAAA+GGG 0.503887 7.4:-15157457 MS.gene055956:CDS
ACCGACGATCACCGGAGTAT+CGG 0.504643 7.4:-15157814 MS.gene055956:CDS
CATGTGCTTATGAAGATGGC+TGG 0.506515 7.4:-15157787 MS.gene055956:CDS
CCTGTCATAGTATTCTTCCA+TGG 0.508891 7.4:-15157935 MS.gene055956:CDS
TCCTAAAAGTCTTGTTTGTG+TGG 0.514991 7.4:-15157405 MS.gene055956:CDS
AAAGAAAGTTTGTGTTTACA+TGG 0.518982 7.4:-15157714 MS.gene055956:CDS
ATGGCTGGAATGCACTCAAA+TGG 0.521371 7.4:-15157772 MS.gene055956:CDS
TTTCCATGTGCTTATGAAGA+TGG 0.528955 7.4:-15157791 MS.gene055956:CDS
TGGCAATTGGCTTATGTGGA+TGG 0.532054 7.4:-15157359 MS.gene055956:CDS
CAAGAAACTCTGCTAAATCT+CGG 0.546001 7.4:+15158128 None:intergenic
GTTTCTTGACAGAAAAGTCC+CGG 0.552120 7.4:-15158113 MS.gene055956:CDS
TCGACCGGAATAGCATTTGC+CGG 0.555684 7.4:+15158094 None:intergenic
CGACCGGAATAGCATTTGCC+GGG 0.556973 7.4:+15158095 None:intergenic
GACCAAACGGGTTACAAGCA+GGG 0.558028 7.4:+15157465 None:intergenic
CAAGAAAATGGCTTCAAAGT+GGG 0.561680 7.4:-15157742 MS.gene055956:CDS
GCAAATGCTATTCCGGTCGA+TGG 0.562535 7.4:-15158091 MS.gene055956:CDS
CCATGGAAGAATACTATGAC+AGG 0.563416 7.4:+15157935 None:intergenic
TGGCTGGAATGCACTCAAAT+GGG 0.565881 7.4:-15157771 MS.gene055956:CDS
ACCGATACTCCGGTGATCGT+CGG 0.572460 7.4:+15157813 None:intergenic
TAAACTTCTTTACCTTAAGG+AGG 0.574148 7.4:-15157312 MS.gene055956:CDS
AATCTTCTAAGAAGAGCAGA+TGG 0.579373 7.4:-15158160 MS.gene055956:CDS
TACAACTAACCAGACATGAC+TGG 0.594054 7.4:-15158633 None:intergenic
TCATTTCTATTGCCTTATGG+AGG 0.599565 7.4:-15157255 MS.gene055956:CDS
CAGCCATCTTCATAAGCACA+TGG 0.605205 7.4:+15157788 None:intergenic
AATGAAAAGACTCCATCGAC+CGG 0.605436 7.4:+15158079 None:intergenic
TCAAGAAAATGGCTTCAAAG+TGG 0.615492 7.4:-15157743 MS.gene055956:CDS
GCACATGGAAACCGATACTC+CGG 0.625683 7.4:+15157803 None:intergenic
ATGGCAGGTGATAGTTCTGG+TGG 0.630946 7.4:-15157695 MS.gene055956:CDS
GATCATATCGAACGAAACAC+CGG 0.631025 7.4:-15158055 MS.gene055956:CDS
AGTCAACCTCAGTGAATCCA+GGG 0.636231 7.4:-15158601 MS.gene055956:intron
TGTAGCAGTAAAAGCTTGCG+AGG 0.639380 7.4:-15157657 MS.gene055956:CDS
ATAAACACGATTGAATAGAC+CGG 0.640482 7.4:+15158036 None:intergenic
TAACCCGTTTGGTCCAAAAG+GGG 0.642733 7.4:-15157456 MS.gene055956:CDS
AATGAGAGAAGCTTCCACCA+TGG 0.652602 7.4:+15157918 None:intergenic
GTCATAGTATTCTTCCATGG+TGG 0.656265 7.4:-15157932 MS.gene055956:CDS
TCAGAAAATGAATCTCAATG+GGG 0.736042 7.4:-15158001 MS.gene055956:CDS
ATATTACCCTGGATTCACTG+AGG 0.739496 7.4:+15158595 None:intergenic
CAAACGGGTTACAAGCAGGG+TGG 0.789743 7.4:+15157468 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACAAAATTTTCTAAGA+TGG + chr7.4:15157280-15157299 None:intergenic 15.0%
!! AAAGGGGAAAAAAATATTAA+AGG - chr7.4:15158401-15158420 MS.gene055956:intron 20.0%
!! AAGAAAAATGAAACAAATCT+TGG + chr7.4:15157552-15157571 None:intergenic 20.0%
!! AGAAAAATGAAACAAATCTT+GGG + chr7.4:15157551-15157570 None:intergenic 20.0%
!! ATAAGAACATATGTATTCAA+TGG + chr7.4:15157639-15157658 None:intergenic 20.0%
!! CAATAGAAATGATCATTATT+AGG + chr7.4:15158578-15158597 None:intergenic 20.0%
!! TAAACTTTAACATATGTGAT+TGG - chr7.4:15157356-15157375 MS.gene055956:CDS 20.0%
!!! ATCATGTAATATTTTTCTGT+GGG - chr7.4:15157391-15157410 MS.gene055956:CDS 20.0%
!!! TTAATATTTTTTTCCCCTTT+TGG + chr7.4:15158401-15158420 None:intergenic 20.0%
! AAAGAAAGTTTGTGTTTACA+TGG - chr7.4:15158127-15158146 MS.gene055956:CDS 25.0%
! ACAATTTCTGTTGTACTTAA+TGG + chr7.4:15157885-15157904 None:intergenic 25.0%
! GCAAAACAATAACTTTAGAT+TGG + chr7.4:15157605-15157624 None:intergenic 25.0%
! TCATTATGTGTCACAATAAT+TGG - chr7.4:15157509-15157528 MS.gene055956:CDS 25.0%
! TGTTAAACTTCTTTACCTTA+AGG - chr7.4:15158526-15158545 MS.gene055956:intron 25.0%
! TTCAGAAAATGAATCTCAAT+GGG - chr7.4:15157839-15157858 MS.gene055956:CDS 25.0%
!! AGTTTCTTCTTTTTATGTGT+TGG - chr7.4:15157451-15157470 MS.gene055956:CDS 25.0%
!! GATCATGTAATATTTTTCTG+TGG - chr7.4:15157390-15157409 MS.gene055956:CDS 25.0%
!! GTTTCTTCTTTTTATGTGTT+GGG - chr7.4:15157452-15157471 MS.gene055956:CDS 25.0%
!! TCTATGATACATTTTGTAGA+AGG - chr7.4:15157964-15157983 MS.gene055956:CDS 25.0%
!!! TTTGCTTTGTTTTTGATGTT+GGG - chr7.4:15157319-15157338 MS.gene055956:CDS 25.0%
ATAAACACGATTGAATAGAC+CGG + chr7.4:15157808-15157827 None:intergenic 30.0%
ATTCTTCTTCATCCTTTGTT+TGG - chr7.4:15158239-15158258 MS.gene055956:intron 30.0%
CTTCAGAAAATGAATCTCAA+TGG - chr7.4:15157838-15157857 MS.gene055956:CDS 30.0%
TAAACTTCTTTACCTTAAGG+AGG - chr7.4:15158529-15158548 MS.gene055956:intron 30.0%
TCAGAAAATGAATCTCAATG+GGG - chr7.4:15157840-15157859 MS.gene055956:CDS 30.0%
TGATCATTTCTATTGCCTTA+TGG - chr7.4:15158583-15158602 MS.gene055956:intron 30.0%
TTAGATTACAAGATCGTGAT+TGG - chr7.4:15158312-15158331 MS.gene055956:intron 30.0%
! GGTTTCTTGTTATGGTAAAT+TGG - chr7.4:15157473-15157492 MS.gene055956:CDS 30.0%
! GTTTGGATCTTTTACAAGAT+TGG - chr7.4:15158462-15158481 MS.gene055956:intron 30.0%
! TCTTTTACAAGATTGGCAAT+TGG - chr7.4:15158469-15158488 MS.gene055956:intron 30.0%
!! GATTCATTTTCTGAAGATGA+TGG + chr7.4:15157834-15157853 None:intergenic 30.0%
!! GATTCTGAAATGAGATTAGA+TGG - chr7.4:15158278-15158297 MS.gene055956:intron 30.0%
!!! ATATTTTTCTGTGGGTTAGT+TGG - chr7.4:15157399-15157418 MS.gene055956:CDS 30.0%
!!! GTTTGCTTTGTTTTTGATGT+TGG - chr7.4:15157318-15157337 MS.gene055956:CDS 30.0%
AAAGTTTGTGTTTACATGGC+AGG - chr7.4:15158131-15158150 MS.gene055956:CDS 35.0%
AATGGGTGAAGTCAAGAAAA+TGG - chr7.4:15158087-15158106 MS.gene055956:CDS 35.0%
AGTTCTTGATTTCCTCCATA+AGG + chr7.4:15158601-15158620 None:intergenic 35.0%
ATGTGTTGGGTTTCTTGTTA+TGG - chr7.4:15157465-15157484 MS.gene055956:CDS 35.0%
CAAGAAAATGGCTTCAAAGT+GGG - chr7.4:15158099-15158118 MS.gene055956:CDS 35.0%
CAAGAAACTCTGCTAAATCT+CGG + chr7.4:15157716-15157735 None:intergenic 35.0%
TACAAGATCGTGATTGGTAT+TGG - chr7.4:15158318-15158337 MS.gene055956:intron 35.0%
TCAAGAAAATGGCTTCAAAG+TGG - chr7.4:15158098-15158117 MS.gene055956:CDS 35.0%
TCATTTCTATTGCCTTATGG+AGG - chr7.4:15158586-15158605 MS.gene055956:intron 35.0%
TGGAAGATGATATATTACCC+TGG + chr7.4:15157260-15157279 None:intergenic 35.0%
TTTCCATGTGCTTATGAAGA+TGG - chr7.4:15158050-15158069 MS.gene055956:CDS 35.0%
! AATCTTCTAAGAAGAGCAGA+TGG - chr7.4:15157681-15157700 MS.gene055956:CDS 35.0%
! CAGAAGGAATTGAAGTGTTA+GGG - chr7.4:15158213-15158232 MS.gene055956:CDS 35.0%
! GTGGATGGTTTAAGGAATTT+TGG - chr7.4:15158497-15158516 MS.gene055956:intron 35.0%
! TTGTAAAGCTGCTGTTGTTT+CGG - chr7.4:15157998-15158017 MS.gene055956:CDS 35.0%
!! TCCTAAAAGTCTTGTTTGTG+TGG - chr7.4:15158436-15158455 MS.gene055956:intron 35.0%
!!! CTTTTTTCACCACCAAACAA+AGG + chr7.4:15158254-15158273 None:intergenic 35.0%
AACCAATAGTAGCCTCCTTA+AGG + chr7.4:15158544-15158563 None:intergenic 40.0%
AATGAAAAGACTCCATCGAC+CGG + chr7.4:15157765-15157784 None:intergenic 40.0%
ATATTACCCTGGATTCACTG+AGG + chr7.4:15157249-15157268 None:intergenic 40.0%
CCATGGAAGAATACTATGAC+AGG + chr7.4:15157909-15157928 None:intergenic 40.0%
CCTGTCATAGTATTCTTCCA+TGG - chr7.4:15157906-15157925 MS.gene055956:CDS 40.0%
GATCATATCGAACGAAACAC+CGG - chr7.4:15157786-15157805 MS.gene055956:CDS 40.0%
GTCATAGTATTCTTCCATGG+TGG - chr7.4:15157909-15157928 MS.gene055956:CDS 40.0%
GTTTCTTGACAGAAAAGTCC+CGG - chr7.4:15157728-15157747 MS.gene055956:CDS 40.0%
TACCTTAAGGAGGCTACTAT+TGG - chr7.4:15158539-15158558 MS.gene055956:intron 40.0%
TGGCTTATGTGGATGGTTTA+AGG - chr7.4:15158489-15158508 MS.gene055956:intron 40.0%
! AGATTGGCAATTGGCTTATG+TGG - chr7.4:15158478-15158497 MS.gene055956:intron 40.0%
! CTTCTTCATCCTTTGTTTGG+TGG - chr7.4:15158242-15158261 MS.gene055956:intron 40.0%
! GCAGAAGGAATTGAAGTGTT+AGG - chr7.4:15158212-15158231 MS.gene055956:CDS 40.0%
! GCCACACAAACAAGACTTTT+AGG + chr7.4:15158440-15158459 None:intergenic 40.0%
! TTTTCCCCTTTTGGACCAAA+CGG + chr7.4:15158392-15158411 None:intergenic 40.0%
!! AAAAGTCTTGTTTGTGTGGC+TGG - chr7.4:15158440-15158459 MS.gene055956:intron 40.0%
!! GTGGGTTAGTTGGCTTAATT+TGG - chr7.4:15157409-15157428 MS.gene055956:CDS 40.0%
!!! TGGAGAGCTTTTTTACCAGA+AGG - chr7.4:15158338-15158357 MS.gene055956:intron 40.0%
AAGTCAACCTCAGTGAATCC+AGG - chr7.4:15157239-15157258 MS.gene055956:CDS 45.0%
AATGAGAGAAGCTTCCACCA+TGG + chr7.4:15157926-15157945 None:intergenic 45.0%
AGTCAACCTCAGTGAATCCA+GGG - chr7.4:15157240-15157259 MS.gene055956:CDS 45.0%
ATGGCTGGAATGCACTCAAA+TGG - chr7.4:15158069-15158088 MS.gene055956:CDS 45.0%
CAGCCATCTTCATAAGCACA+TGG + chr7.4:15158056-15158075 None:intergenic 45.0%
CATGTGCTTATGAAGATGGC+TGG - chr7.4:15158054-15158073 MS.gene055956:CDS 45.0%
GGTTAATTACCGACGATCAC+CGG - chr7.4:15158019-15158038 MS.gene055956:CDS 45.0%
GTAACCCGTTTGGTCCAAAA+GGG - chr7.4:15158384-15158403 MS.gene055956:intron 45.0%
TAACCCGTTTGGTCCAAAAG+GGG - chr7.4:15158385-15158404 MS.gene055956:intron 45.0%
TACATGGCAGGTGATAGTTC+TGG - chr7.4:15158143-15158162 MS.gene055956:CDS 45.0%
TGGCTGGAATGCACTCAAAT+GGG - chr7.4:15158070-15158089 MS.gene055956:CDS 45.0%
TGGTCTCTATCTTCACCTTC+TGG + chr7.4:15158356-15158375 None:intergenic 45.0%
TGTAACCCGTTTGGTCCAAA+AGG - chr7.4:15158383-15158402 MS.gene055956:intron 45.0%
TGTAGCAGTAAAAGCTTGCG+AGG - chr7.4:15158184-15158203 MS.gene055956:CDS 45.0%
! TCTTGTTTGTGTGGCTGGTT+TGG - chr7.4:15158445-15158464 MS.gene055956:intron 45.0%
! TGGCAATTGGCTTATGTGGA+TGG - chr7.4:15158482-15158501 MS.gene055956:intron 45.0%
! TTTCCCCTTTTGGACCAAAC+GGG + chr7.4:15158391-15158410 None:intergenic 45.0%
AGTCCCGGCAAATGCTATTC+CGG - chr7.4:15157743-15157762 MS.gene055956:CDS 50.0%
GCAAATGCTATTCCGGTCGA+TGG - chr7.4:15157750-15157769 MS.gene055956:CDS 50.0%
GCACATGGAAACCGATACTC+CGG + chr7.4:15158041-15158060 None:intergenic 50.0%
GCTTGCGAGGAAAAAGCAGA+AGG - chr7.4:15158197-15158216 MS.gene055956:CDS 50.0%
TCGACCGGAATAGCATTTGC+CGG + chr7.4:15157750-15157769 None:intergenic 50.0%
!! ATGGCAGGTGATAGTTCTGG+TGG - chr7.4:15158146-15158165 MS.gene055956:CDS 50.0%
!! GACCAAACGGGTTACAAGCA+GGG + chr7.4:15158379-15158398 None:intergenic 50.0%
ACCGACGATCACCGGAGTAT+CGG - chr7.4:15158027-15158046 MS.gene055956:CDS 55.0%
ACCGATACTCCGGTGATCGT+CGG + chr7.4:15158031-15158050 None:intergenic 55.0%
CACCCTGCTTGTAACCCGTT+TGG - chr7.4:15158374-15158393 MS.gene055956:intron 55.0%
CGACCGGAATAGCATTTGCC+GGG + chr7.4:15157749-15157768 None:intergenic 55.0%
!! CAAACGGGTTACAAGCAGGG+TGG + chr7.4:15158376-15158395 None:intergenic 55.0%
!! GGACCAAACGGGTTACAAGC+AGG + chr7.4:15158380-15158399 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 15157223 15158640 15157223 ID=MS.gene055956
chr7.4 mRNA 15157223 15158640 15157223 ID=MS.gene055956.t1;Parent=MS.gene055956
chr7.4 exon 15158602 15158640 15158602 ID=MS.gene055956.t1.exon1;Parent=MS.gene055956.t1
chr7.4 CDS 15158602 15158640 15158602 ID=cds.MS.gene055956.t1;Parent=MS.gene055956.t1
chr7.4 exon 15157223 15158236 15157223 ID=MS.gene055956.t1.exon2;Parent=MS.gene055956.t1
chr7.4 CDS 15157223 15158236 15157223 ID=cds.MS.gene055956.t1;Parent=MS.gene055956.t1
Gene Sequence

>MS.gene055956

ATGACTGGTACTAATGAAGTCAACCTCAGTGAATCCAGGGTAATATATCATCTTCCATCTTAGAAAATTTTGTTTTTTTTGTTTAAAGCTTTGTTGTTTGCTTTGTTTTTGATGTTGGGTTTTCAAAAAGTTCTAAACTTTAACATATGTGATTGGTGTTTTGTTAAGATCATGTAATATTTTTCTGTGGGTTAGTTGGCTTAATTTGGTTTTTGTTTTCTACTTTCTAGTTTCTTCTTTTTATGTGTTGGGTTTCTTGTTATGGTAAATTGGAAAGATTTGATTTTCATTATGTGTCACAATAATTGGAAATTTTTGTCTTCTACCCAAGATTTGTTTCATTTTTCTTTCTTCTGCAATGATTCAACACAAAAAAGAACCAATCTAAAGTTATTGTTTTGCAGAGTGTTGTTCCATTGAATACATATGTTCTTATCTCAAATTTCAAGCTTGCTTACAATCTTCTAAGAAGAGCAGATGGAACATTCAACCGAGATTTAGCAGAGTTTCTTGACAGAAAAGTCCCGGCAAATGCTATTCCGGTCGATGGAGTCTTTTCATTCGATCATATCGAACGAAACACCGGTCTATTCAATCGTGTTTATCTACCATCATCTTCAGAAAATGAATCTCAATGGGGTGTCAAAGATTTAGAGAAACCATTAAGTACAACAGAAATTGTTCCTGTCATAGTATTCTTCCATGGTGGAAGCTTCTCTCATTCTTCAGCAAACAGTGCTATCTATGATACATTTTGTAGAAGGTTAGTAAGTGTTTGTAAAGCTGCTGTTGTTTCGGTTAATTACCGACGATCACCGGAGTATCGGTTTCCATGTGCTTATGAAGATGGCTGGAATGCACTCAAATGGGTGAAGTCAAGAAAATGGCTTCAAAGTGGGAAAGAAAAGAAAGTTTGTGTTTACATGGCAGGTGATAGTTCTGGTGGAAACATTGTTCATCATGTAGCAGTAAAAGCTTGCGAGGAAAAAGCAGAAGGAATTGAAGTGTTAGGGAACATTCTTCTTCATCCTTTGTTTGGTGGTGAAAAAAGAACAGATTCTGAAATGAGATTAGATGGAAAGTACTTTGTTAGATTACAAGATCGTGATTGGTATTGGAGAGCTTTTTTACCAGAAGGTGAAGATAGAGACCACCCTGCTTGTAACCCGTTTGGTCCAAAAGGGGAAAAAAATATTAAAGGACTTGATAAATTTCCTAAAAGTCTTGTTTGTGTGGCTGGTTTGGATCTTTTACAAGATTGGCAATTGGCTTATGTGGATGGTTTAAGGAATTTTGGTCAAGATGTTAAACTTCTTTACCTTAAGGAGGCTACTATTGGTTTTTACTTCTTGCCTAATAATGATCATTTCTATTGCCTTATGGAGGAAATCAAGAACTTTGTTAATCCTAACTGTTAA

Protein sequence

>MS.gene055956.t1

MTGTNEVNLSESRSVVPLNTYVLISNFKLAYNLLRRADGTFNRDLAEFLDRKVPANAIPVDGVFSFDHIERNTGLFNRVYLPSSSENESQWGVKDLEKPLSTTEIVPVIVFFHGGSFSHSSANSAIYDTFCRRLVSVCKAAVVSVNYRRSPEYRFPCAYEDGWNALKWVKSRKWLQSGKEKKVCVYMAGDSSGGNIVHHVAVKACEEKAEGIEVLGNILLHPLFGGEKRTDSEMRLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPKGEKNIKGLDKFPKSLVCVAGLDLLQDWQLAYVDGLRNFGQDVKLLYLKEATIGFYFLPNNDHFYCLMEEIKNFVNPNC