Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055497.t1 | XP_003602807.1 | 98.6 | 369 | 5 | 0 | 1 | 369 | 1 | 369 | 6.10E-209 | 736.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055497.t1 | G7J3W3 | 98.6 | 369 | 5 | 0 | 1 | 369 | 1 | 369 | 4.4e-209 | 736.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050076 | MS.gene055497 | -0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene055497 | -0.821926 | 3.11E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene055497 | -0.817139 | 3.85E-52 | -1.69E-46 |
| MS.gene052290 | MS.gene055497 | -0.802652 | 5.07E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene055497 | -0.813304 | 2.74E-51 | -1.69E-46 |
| MS.gene054802 | MS.gene055497 | -0.811142 | 8.12E-51 | -1.69E-46 |
| MS.gene054803 | MS.gene055497 | -0.809992 | 1.44E-50 | -1.69E-46 |
| MS.gene054804 | MS.gene055497 | -0.812885 | 3.39E-51 | -1.69E-46 |
| MS.gene055254 | MS.gene055497 | -0.849847 | 2.49E-60 | -1.69E-46 |
| MS.gene055497 | MS.gene057246 | -0.816947 | 4.25E-52 | -1.69E-46 |
| MS.gene055497 | MS.gene058903 | -0.802256 | 6.11E-49 | -1.69E-46 |
| MS.gene055497 | MS.gene059326 | -0.80476 | 1.85E-49 | -1.69E-46 |
| MS.gene055497 | MS.gene062083 | -0.803477 | 3.42E-49 | -1.69E-46 |
| MS.gene055497 | MS.gene06221 | 0.976145 | 2.87E-141 | -1.69E-46 |
| MS.gene055497 | MS.gene064741 | -0.801035 | 1.09E-48 | -1.69E-46 |
| MS.gene055497 | MS.gene066053 | -0.800851 | 1.19E-48 | -1.69E-46 |
| MS.gene055497 | MS.gene06607 | -0.837413 | 5.28E-57 | -1.69E-46 |
| MS.gene055497 | MS.gene06820 | -0.82253 | 2.26E-53 | -1.69E-46 |
| MS.gene055497 | MS.gene070666 | -0.804667 | 1.94E-49 | -1.69E-46 |
| MS.gene055497 | MS.gene072568 | -0.813986 | 1.94E-51 | -1.69E-46 |
| MS.gene055497 | MS.gene072571 | -0.813842 | 2.09E-51 | -1.69E-46 |
| MS.gene055497 | MS.gene09357 | -0.82718 | 1.80E-54 | -1.69E-46 |
| MS.gene055497 | MS.gene21116 | -0.823702 | 1.20E-53 | -1.69E-46 |
| MS.gene055497 | MS.gene21253 | -0.806444 | 8.20E-50 | -1.69E-46 |
| MS.gene055497 | MS.gene23137 | -0.821772 | 3.38E-53 | -1.69E-46 |
| MS.gene055497 | MS.gene23141 | -0.821226 | 4.52E-53 | -1.69E-46 |
| MS.gene055497 | MS.gene28267 | -0.807704 | 4.44E-50 | -1.69E-46 |
| MS.gene055497 | MS.gene30877 | -0.803881 | 2.82E-49 | -1.69E-46 |
| MS.gene055497 | MS.gene35738 | -0.812975 | 3.23E-51 | -1.69E-46 |
| MS.gene055497 | MS.gene35938 | -0.823942 | 1.06E-53 | -1.69E-46 |
| MS.gene055497 | MS.gene38604 | 0.992565 | 4.61E-194 | -1.69E-46 |
| MS.gene055497 | MS.gene40233 | -0.83226 | 1.05E-55 | -1.69E-46 |
| MS.gene055497 | MS.gene44069 | -0.804308 | 2.30E-49 | -1.69E-46 |
| MS.gene055497 | MS.gene48301 | -0.815609 | 8.47E-52 | -1.69E-46 |
| MS.gene055497 | MS.gene48438 | -0.818519 | 1.88E-52 | -1.69E-46 |
| MS.gene055497 | MS.gene61508 | 0.800673 | 1.29E-48 | -1.69E-46 |
| MS.gene055497 | MS.gene64148 | -0.819183 | 1.33E-52 | -1.69E-46 |
| MS.gene055497 | MS.gene64414 | -0.807743 | 4.35E-50 | -1.69E-46 |
| MS.gene055497 | MS.gene70247 | -0.800647 | 1.31E-48 | -1.69E-46 |
| MS.gene055497 | MS.gene77928 | -0.824596 | 7.41E-54 | -1.69E-46 |
| MS.gene055497 | MS.gene92718 | -0.804597 | 2.00E-49 | -1.69E-46 |
| MS.gene055497 | MS.gene96754 | -0.824343 | 8.50E-54 | -1.69E-46 |
| MS.gene055497 | MS.gene96838 | -0.850271 | 1.89E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055497.t1 | MTR_3g099200 | 98.645 | 369 | 5 | 0 | 1 | 369 | 1 | 369 | 0.0 | 761 |
| MS.gene055497.t1 | MTR_3g099200 | 99.379 | 322 | 2 | 0 | 48 | 369 | 1 | 322 | 0.0 | 669 |
| MS.gene055497.t1 | MTR_4g102890 | 72.460 | 374 | 73 | 7 | 1 | 365 | 1 | 353 | 0.0 | 533 |
| MS.gene055497.t1 | MTR_4g102890 | 76.087 | 322 | 54 | 5 | 50 | 365 | 1 | 305 | 5.77e-177 | 494 |
| MS.gene055497.t1 | MTR_4g104060 | 71.067 | 356 | 78 | 6 | 13 | 360 | 6 | 344 | 9.40e-176 | 493 |
| MS.gene055497.t1 | MTR_4g104060 | 71.470 | 347 | 74 | 6 | 22 | 360 | 1 | 330 | 1.75e-172 | 484 |
| MS.gene055497.t1 | MTR_4g102890 | 76.307 | 287 | 45 | 5 | 85 | 365 | 1 | 270 | 1.04e-155 | 439 |
| MS.gene055497.t1 | MTR_8g079020 | 30.198 | 202 | 124 | 5 | 166 | 355 | 181 | 377 | 3.19e-18 | 87.0 |
| MS.gene055497.t1 | MTR_8g079040 | 29.703 | 202 | 125 | 5 | 166 | 355 | 181 | 377 | 4.38e-18 | 86.3 |
| MS.gene055497.t1 | MTR_1g101790 | 29.167 | 192 | 114 | 7 | 181 | 357 | 174 | 358 | 6.73e-17 | 82.4 |
| MS.gene055497.t1 | MTR_1g101790 | 29.167 | 192 | 114 | 7 | 181 | 357 | 174 | 358 | 9.04e-17 | 82.4 |
| MS.gene055497.t1 | MTR_6g089580 | 29.146 | 199 | 122 | 7 | 181 | 367 | 172 | 363 | 2.74e-14 | 74.7 |
| MS.gene055497.t1 | MTR_6g464840 | 29.146 | 199 | 122 | 7 | 181 | 367 | 172 | 363 | 3.70e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055497.t1 | AT2G23520 | 29.208 | 202 | 126 | 5 | 166 | 355 | 182 | 378 | 3.43e-18 | 86.7 |
| MS.gene055497.t1 | AT5G66950 | 32.597 | 181 | 105 | 6 | 187 | 355 | 201 | 376 | 4.84e-18 | 86.3 |
| MS.gene055497.t1 | AT4G37100 | 28.713 | 202 | 127 | 6 | 166 | 355 | 186 | 382 | 4.66e-17 | 83.2 |
| MS.gene055497.t1 | AT5G51920 | 27.615 | 239 | 140 | 10 | 137 | 357 | 128 | 351 | 1.43e-16 | 81.6 |
| MS.gene055497.t1 | AT4G22980 | 28.512 | 242 | 146 | 8 | 138 | 357 | 94 | 330 | 8.53e-16 | 79.3 |
Find 83 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCAACCTTGAATATTC+TGG | 0.214881 | 3.2:+82547141 | None:intergenic |
| TGGTTGGACTTGAGGATTAA+AGG | 0.225306 | 3.2:-82546667 | MS.gene055497:CDS |
| AGAAAGTTACCCTTTCATTA+AGG | 0.229969 | 3.2:-82546785 | MS.gene055497:CDS |
| ATCAAACAGCATGGTCTTAA+AGG | 0.234277 | 3.2:-82547400 | MS.gene055497:intron |
| AGGATTCCTTTCTGACTAAA+AGG | 0.251516 | 3.2:+82546380 | None:intergenic |
| AGGATTGGAATTAGTGTTAC+TGG | 0.261905 | 3.2:+82546417 | None:intergenic |
| TCAACATATTCCATTTCTTT+TGG | 0.272659 | 3.2:+82547186 | None:intergenic |
| AACAAGAAATCCTCATTTAC+TGG | 0.292904 | 3.2:-82546931 | MS.gene055497:CDS |
| CTCAGTTAAGTCAAAACTTT+AGG | 0.307220 | 3.2:-82546642 | MS.gene055497:CDS |
| ATCTTGGCCCTGTCAAATTC+AGG | 0.316783 | 3.2:+82546988 | None:intergenic |
| GAAAGTTACCCTTTCATTAA+GGG | 0.324695 | 3.2:-82546784 | MS.gene055497:CDS |
| GGAAATTCAAGCTCAAAATA+AGG | 0.334997 | 3.2:-82546890 | MS.gene055497:CDS |
| AGGTTCTTCATTGATGATAA+AGG | 0.352472 | 3.2:+82547089 | None:intergenic |
| CTCAAGTCCAACCAAGTCTT+TGG | 0.354864 | 3.2:+82546676 | None:intergenic |
| TGAAGAACCTTTAGATGAAA+AGG | 0.360026 | 3.2:-82547076 | MS.gene055497:CDS |
| TGATTGCTCCAATTGAATCT+TGG | 0.367304 | 3.2:+82546972 | None:intergenic |
| GGATAAGAGAATAAGCCTTT+TGG | 0.370572 | 3.2:+82546601 | None:intergenic |
| TTGATTGAAGGAGATGGAAA+TGG | 0.386242 | 3.2:-82547126 | MS.gene055497:CDS |
| GGTTGGACTTGAGGATTAAA+GGG | 0.390781 | 3.2:-82546666 | MS.gene055497:CDS |
| TCCAATCACACCAAAAGAAA+TGG | 0.396737 | 3.2:-82547196 | MS.gene055497:CDS |
| AGACTACAGATCACAAAATC+AGG | 0.400820 | 3.2:+82546457 | None:intergenic |
| TGACAGGGCCAAGATTCAAT+TGG | 0.416450 | 3.2:-82546980 | MS.gene055497:CDS |
| GCAAGTGATTCTTGAAGGAT+TGG | 0.425657 | 3.2:+82546402 | None:intergenic |
| ATCTTCTTCTTGATCAAGAA+TGG | 0.426120 | 3.2:+82546747 | None:intergenic |
| CAGAAGCTCACAGGAACAAT+TGG | 0.426312 | 3.2:-82546546 | MS.gene055497:CDS |
| GATTCTTCTTCATATACATT+TGG | 0.428676 | 3.2:-82547021 | MS.gene055497:CDS |
| GATGCCTCTGCTTATGTAGT+TGG | 0.445059 | 3.2:-82546511 | MS.gene055497:CDS |
| CTTCTGAAATTTCATGCTCC+TGG | 0.446468 | 3.2:+82547635 | None:intergenic |
| CAAAGTATCCAGAATATTCA+AGG | 0.446957 | 3.2:-82547149 | MS.gene055497:CDS |
| CACATCAGCTGCTTCATCTC+AGG | 0.449866 | 3.2:-82546353 | MS.gene055497:CDS |
| TGATTGAAGGAGATGGAAAT+GGG | 0.449991 | 3.2:-82547125 | MS.gene055497:CDS |
| AAAAGGCAAGTGATTCTTGA+AGG | 0.453246 | 3.2:+82546397 | None:intergenic |
| CAAAGACTTGGTTGGACTTG+AGG | 0.454098 | 3.2:-82546675 | MS.gene055497:CDS |
| TCCAACCAAGTCTTTGGTGC+AGG | 0.454333 | 3.2:+82546682 | None:intergenic |
| TACCTTGTTCTCTTCACTCC+AGG | 0.458116 | 3.2:-82546835 | MS.gene055497:CDS |
| AGATTCAATTGGAGCAATCA+AGG | 0.463937 | 3.2:-82546969 | MS.gene055497:CDS |
| TCCGCGAATTCGATATTAGA+TGG | 0.471848 | 3.2:-82547224 | MS.gene055497:CDS |
| ATCATAGCATCCTTGTAGCC+TGG | 0.481377 | 3.2:+82546817 | None:intergenic |
| TCTCTTCACTCCAGGCTACA+AGG | 0.485295 | 3.2:-82546827 | MS.gene055497:CDS |
| ACCATCTAATATCGAATTCG+CGG | 0.487526 | 3.2:+82547223 | None:intergenic |
| GAAGAACCTTTAGATGAAAA+GGG | 0.490344 | 3.2:-82547075 | MS.gene055497:CDS |
| GTAGTCTACCTGAATTTGAC+AGG | 0.495003 | 3.2:-82546996 | MS.gene055497:CDS |
| AGTAGTTTCCCTTAATGAAA+GGG | 0.500410 | 3.2:+82546776 | None:intergenic |
| CCCTGCACCAAAGACTTGGT+TGG | 0.503875 | 3.2:-82546683 | MS.gene055497:CDS |
| TTATCCCTGCACCAAAGACT+TGG | 0.509762 | 3.2:-82546687 | MS.gene055497:CDS |
| TGGAAGTTTCATATCGATCC+CGG | 0.516056 | 3.2:-82546911 | MS.gene055497:CDS |
| CTTATGTTAGGTAACATATC+CGG | 0.517913 | 3.2:-82547493 | MS.gene055497:intron |
| GAATTCGATATTAGATGGTC+AGG | 0.521252 | 3.2:-82547219 | MS.gene055497:CDS |
| TAGTAGTTTCCCTTAATGAA+AGG | 0.521318 | 3.2:+82546775 | None:intergenic |
| GAATATTCAAGGTTGATTGA+AGG | 0.523778 | 3.2:-82547138 | MS.gene055497:CDS |
| TCAAGGTTGATTGAAGGAGA+TGG | 0.526868 | 3.2:-82547132 | MS.gene055497:CDS |
| TAAGTCAAAACTTTAGGAGG+AGG | 0.533314 | 3.2:-82546636 | MS.gene055497:CDS |
| GCTTCAGCTATGATGTGAGC+TGG | 0.534188 | 3.2:+82547258 | None:intergenic |
| TATGAAACTTCCAGTAAATG+AGG | 0.537711 | 3.2:+82546921 | None:intergenic |
| GAAGTCAAGGACATTAAGAA+AGG | 0.539164 | 3.2:-82547456 | MS.gene055497:CDS |
| AGGTGTAAGATCAGTCCAAA+AGG | 0.543212 | 3.2:-82546616 | MS.gene055497:CDS |
| GAAGAAGAATCTCTAGGACT+AGG | 0.547253 | 3.2:+82547033 | None:intergenic |
| ATGCTAGTGGAACAATGCAT+TGG | 0.548958 | 3.2:-82546573 | MS.gene055497:CDS |
| CTACAAGGATGCTATGATGT+TGG | 0.551390 | 3.2:-82546812 | MS.gene055497:CDS |
| GAGCATGAAATTTCAGAAGC+AGG | 0.554400 | 3.2:-82547631 | MS.gene055497:CDS |
| AGTTAAGTCAAAACTTTAGG+AGG | 0.555539 | 3.2:-82546639 | MS.gene055497:CDS |
| CTAGGACTAGGAGTCCCTCT+TGG | 0.556097 | 3.2:+82547045 | None:intergenic |
| ATTGTTCCACTAGCATCTGC+TGG | 0.557819 | 3.2:+82546580 | None:intergenic |
| CTCTGCTTATGTAGTTGGAA+AGG | 0.565206 | 3.2:-82546506 | MS.gene055497:CDS |
| GTATATGAAGAAGAATCTCT+AGG | 0.565470 | 3.2:+82547027 | None:intergenic |
| TAGTATGGGAACAAATAGCC+AGG | 0.572151 | 3.2:-82547653 | None:intergenic |
| TGAAGCAGCTGATGTGTCAA+AGG | 0.574148 | 3.2:+82546360 | None:intergenic |
| AAGGATGCTATGATGTTGGT+AGG | 0.578373 | 3.2:-82546808 | MS.gene055497:CDS |
| ATTGGATCTCAGAAGCTCAC+AGG | 0.582954 | 3.2:-82546555 | MS.gene055497:CDS |
| TCTTATCCAGCAGATGCTAG+TGG | 0.585875 | 3.2:-82546586 | MS.gene055497:CDS |
| GAAAAGGGAAAGTCACCAAG+AGG | 0.596956 | 3.2:-82547060 | MS.gene055497:CDS |
| CCAACCAAGTCTTTGGTGCA+GGG | 0.603770 | 3.2:+82546683 | None:intergenic |
| GGTTGTAGAAAATGAAGTCA+AGG | 0.620310 | 3.2:-82547469 | MS.gene055497:CDS |
| AGCCTGGAGTGAAGAGAACA+AGG | 0.633075 | 3.2:+82546833 | None:intergenic |
| GACTACAGATCACAAAATCA+GGG | 0.633592 | 3.2:+82546458 | None:intergenic |
| ATGTTAGGTAACATATCCGG+AGG | 0.642612 | 3.2:-82547490 | MS.gene055497:intron |
| CTTATGTAGTTGGAAAGGAT+CGG | 0.648072 | 3.2:-82546501 | MS.gene055497:CDS |
| AATTTCAGAAGCAGGATCTG+AGG | 0.653221 | 3.2:-82547623 | MS.gene055497:intron |
| CTTTCCAACTACATAAGCAG+AGG | 0.664110 | 3.2:+82546507 | None:intergenic |
| AAGTTGCAAATCAAACAGCA+TGG | 0.672925 | 3.2:-82547409 | MS.gene055497:CDS |
| AAAAGGGAAAGTCACCAAGA+GGG | 0.676816 | 3.2:-82547059 | MS.gene055497:CDS |
| TAGTCTACCTGAATTTGACA+GGG | 0.719966 | 3.2:-82546995 | MS.gene055497:CDS |
| TACAGATCACAAAATCAGGG+CGG | 0.767436 | 3.2:+82546461 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAATCACACATA+AGG | + | chr3.2:82546434-82546453 | None:intergenic | 15.0% |
| !! | ATACACTTTAATCTTATGTT+AGG | - | chr3.2:82546486-82546505 | MS.gene055497:CDS | 20.0% |
| !!! | TCAAGAAGAAGATTTTATAA+AGG | - | chr3.2:82547254-82547273 | MS.gene055497:CDS | 20.0% |
| ! | ATGAATTGAAGCTGAAAAAA+TGG | - | chr3.2:82546672-82546691 | MS.gene055497:CDS | 25.0% |
| ! | CCAACAAACAAATTAAAAGT+TGG | + | chr3.2:82546630-82546649 | None:intergenic | 25.0% |
| ! | GATTCTTCTTCATATACATT+TGG | - | chr3.2:82546970-82546989 | MS.gene055497:CDS | 25.0% |
| ! | TGAATTGTATCAAAACAGAA+AGG | - | chr3.2:82546697-82546716 | MS.gene055497:CDS | 25.0% |
| !! | TCAACATATTCCATTTCTTT+TGG | + | chr3.2:82546808-82546827 | None:intergenic | 25.0% |
| !!! | AAAGGAATTTGCTTGTTTTA+AGG | - | chr3.2:82547272-82547291 | MS.gene055497:CDS | 25.0% |
| !!! | AATAAGGTTTTGAAGCATTA+CGG | - | chr3.2:82547117-82547136 | MS.gene055497:CDS | 25.0% |
| !!! | CCAACTTTTAATTTGTTTGT+TGG | - | chr3.2:82546627-82546646 | MS.gene055497:CDS | 25.0% |
| !!! | TTATTTTGAGCTTGAATTTC+CGG | + | chr3.2:82547102-82547121 | None:intergenic | 25.0% |
| !!! | TTTTTTCAGCTTCAATTCAT+TGG | + | chr3.2:82546672-82546691 | None:intergenic | 25.0% |
| AACAAGAAATCCTCATTTAC+TGG | - | chr3.2:82547060-82547079 | MS.gene055497:CDS | 30.0% | |
| AGAAAGTTACCCTTTCATTA+AGG | - | chr3.2:82547206-82547225 | MS.gene055497:CDS | 30.0% | |
| AGTAGTTTCCCTTAATGAAA+GGG | + | chr3.2:82547218-82547237 | None:intergenic | 30.0% | |
| AGTTAAGTCAAAACTTTAGG+AGG | - | chr3.2:82547352-82547371 | MS.gene055497:intron | 30.0% | |
| ATCTTCTTCTTGATCAAGAA+TGG | + | chr3.2:82547247-82547266 | None:intergenic | 30.0% | |
| CTCAGTTAAGTCAAAACTTT+AGG | - | chr3.2:82547349-82547368 | MS.gene055497:intron | 30.0% | |
| CTTATGTTAGGTAACATATC+CGG | - | chr3.2:82546498-82546517 | MS.gene055497:CDS | 30.0% | |
| GAAAGTTACCCTTTCATTAA+GGG | - | chr3.2:82547207-82547226 | MS.gene055497:CDS | 30.0% | |
| GAAGAACCTTTAGATGAAAA+GGG | - | chr3.2:82546916-82546935 | MS.gene055497:CDS | 30.0% | |
| GGAAATTCAAGCTCAAAATA+AGG | - | chr3.2:82547101-82547120 | MS.gene055497:CDS | 30.0% | |
| GTATATGAAGAAGAATCTCT+AGG | + | chr3.2:82546967-82546986 | None:intergenic | 30.0% | |
| TAGTAGTTTCCCTTAATGAA+AGG | + | chr3.2:82547219-82547238 | None:intergenic | 30.0% | |
| TATGAAACTTCCAGTAAATG+AGG | + | chr3.2:82547073-82547092 | None:intergenic | 30.0% | |
| TCAATCAACCTTGAATATTC+TGG | + | chr3.2:82546853-82546872 | None:intergenic | 30.0% | |
| TGAAGAACCTTTAGATGAAA+AGG | - | chr3.2:82546915-82546934 | MS.gene055497:CDS | 30.0% | |
| ! | AGGTTCTTCATTGATGATAA+AGG | + | chr3.2:82546905-82546924 | None:intergenic | 30.0% |
| ! | CAAAGTATCCAGAATATTCA+AGG | - | chr3.2:82546842-82546861 | MS.gene055497:CDS | 30.0% |
| ! | CTGAATTATTGAAGCATTAG+AGG | + | chr3.2:82546458-82546477 | None:intergenic | 30.0% |
| ! | GAATATTCAAGGTTGATTGA+AGG | - | chr3.2:82546853-82546872 | MS.gene055497:CDS | 30.0% |
| !! | TATTTTGAGCTTGAATTTCC+GGG | + | chr3.2:82547101-82547120 | None:intergenic | 30.0% |
| AAAAGGCAAGTGATTCTTGA+AGG | + | chr3.2:82547597-82547616 | None:intergenic | 35.0% | |
| AAGTTGCAAATCAAACAGCA+TGG | - | chr3.2:82546582-82546601 | MS.gene055497:CDS | 35.0% | |
| ACCATCTAATATCGAATTCG+CGG | + | chr3.2:82546771-82546790 | None:intergenic | 35.0% | |
| AGACTACAGATCACAAAATC+AGG | + | chr3.2:82547537-82547556 | None:intergenic | 35.0% | |
| AGATTCAATTGGAGCAATCA+AGG | - | chr3.2:82547022-82547041 | MS.gene055497:CDS | 35.0% | |
| AGGATTCCTTTCTGACTAAA+AGG | + | chr3.2:82547614-82547633 | None:intergenic | 35.0% | |
| AGGATTGGAATTAGTGTTAC+TGG | + | chr3.2:82547577-82547596 | None:intergenic | 35.0% | |
| CTTATGTAGTTGGAAAGGAT+CGG | - | chr3.2:82547490-82547509 | MS.gene055497:intron | 35.0% | |
| GAAGTCAAGGACATTAAGAA+AGG | - | chr3.2:82546535-82546554 | MS.gene055497:CDS | 35.0% | |
| GAATTCGATATTAGATGGTC+AGG | - | chr3.2:82546772-82546791 | MS.gene055497:CDS | 35.0% | |
| GACTACAGATCACAAAATCA+GGG | + | chr3.2:82547536-82547555 | None:intergenic | 35.0% | |
| GGTTGTAGAAAATGAAGTCA+AGG | - | chr3.2:82546522-82546541 | MS.gene055497:CDS | 35.0% | |
| TAGTCTACCTGAATTTGACA+GGG | - | chr3.2:82546996-82547015 | MS.gene055497:CDS | 35.0% | |
| TCCAATCACACCAAAAGAAA+TGG | - | chr3.2:82546795-82546814 | MS.gene055497:CDS | 35.0% | |
| TGATTGAAGGAGATGGAAAT+GGG | - | chr3.2:82546866-82546885 | MS.gene055497:CDS | 35.0% | |
| TGATTGCTCCAATTGAATCT+TGG | + | chr3.2:82547022-82547041 | None:intergenic | 35.0% | |
| TTGATTGAAGGAGATGGAAA+TGG | - | chr3.2:82546865-82546884 | MS.gene055497:CDS | 35.0% | |
| ! | ACTTCATTTTCTACAACCTC+CGG | + | chr3.2:82546520-82546539 | None:intergenic | 35.0% |
| ! | ATCAAACAGCATGGTCTTAA+AGG | - | chr3.2:82546591-82546610 | MS.gene055497:CDS | 35.0% |
| ! | GACTTTCCCTTTTCATCTAA+AGG | + | chr3.2:82546925-82546944 | None:intergenic | 35.0% |
| ! | GGATAAGAGAATAAGCCTTT+TGG | + | chr3.2:82547393-82547412 | None:intergenic | 35.0% |
| ! | TAAGTCAAAACTTTAGGAGG+AGG | - | chr3.2:82547355-82547374 | MS.gene055497:intron | 35.0% |
| !! | TCCATTTCTTTTGGTGTGAT+TGG | + | chr3.2:82546799-82546818 | None:intergenic | 35.0% |
| !!! | TGCTTGTTTTAAGGAGTCAA+AGG | - | chr3.2:82547281-82547300 | MS.gene055497:intron | 35.0% |
| AAAAGGGAAAGTCACCAAGA+GGG | - | chr3.2:82546932-82546951 | MS.gene055497:CDS | 40.0% | |
| AAGGATGCTATGATGTTGGT+AGG | - | chr3.2:82547183-82547202 | MS.gene055497:CDS | 40.0% | |
| AATTTCAGAAGCAGGATCTG+AGG | - | chr3.2:82546368-82546387 | MS.gene055497:CDS | 40.0% | |
| AGGTGTAAGATCAGTCCAAA+AGG | - | chr3.2:82547375-82547394 | MS.gene055497:intron | 40.0% | |
| ATGCTAGTGGAACAATGCAT+TGG | - | chr3.2:82547418-82547437 | MS.gene055497:CDS | 40.0% | |
| ATGTTAGGTAACATATCCGG+AGG | - | chr3.2:82546501-82546520 | MS.gene055497:CDS | 40.0% | |
| CTACAAGGATGCTATGATGT+TGG | - | chr3.2:82547179-82547198 | MS.gene055497:CDS | 40.0% | |
| CTCTGCTTATGTAGTTGGAA+AGG | - | chr3.2:82547485-82547504 | MS.gene055497:CDS | 40.0% | |
| CTTTCCAACTACATAAGCAG+AGG | + | chr3.2:82547487-82547506 | None:intergenic | 40.0% | |
| GAGCATGAAATTTCAGAAGC+AGG | - | chr3.2:82546360-82546379 | MS.gene055497:CDS | 40.0% | |
| GCAAGTGATTCTTGAAGGAT+TGG | + | chr3.2:82547592-82547611 | None:intergenic | 40.0% | |
| GGTTGGACTTGAGGATTAAA+GGG | - | chr3.2:82547325-82547344 | MS.gene055497:intron | 40.0% | |
| GTAGTCTACCTGAATTTGAC+AGG | - | chr3.2:82546995-82547014 | MS.gene055497:CDS | 40.0% | |
| TACAGATCACAAAATCAGGG+CGG | + | chr3.2:82547533-82547552 | None:intergenic | 40.0% | |
| TCCGCGAATTCGATATTAGA+TGG | - | chr3.2:82546767-82546786 | MS.gene055497:CDS | 40.0% | |
| TGGAAGTTTCATATCGATCC+CGG | - | chr3.2:82547080-82547099 | MS.gene055497:CDS | 40.0% | |
| TGGTTGGACTTGAGGATTAA+AGG | - | chr3.2:82547324-82547343 | MS.gene055497:intron | 40.0% | |
| ! | CACTTGCCTTTTAGTCAGAA+AGG | - | chr3.2:82547605-82547624 | MS.gene055497:intron | 40.0% |
| ! | TCAAGGTTGATTGAAGGAGA+TGG | - | chr3.2:82546859-82546878 | MS.gene055497:CDS | 40.0% |
| !! | CTTCTGAAATTTCATGCTCC+TGG | + | chr3.2:82546359-82546378 | None:intergenic | 40.0% |
| !! | GAAGAAGAATCTCTAGGACT+AGG | + | chr3.2:82546961-82546980 | None:intergenic | 40.0% |
| ATCATAGCATCCTTGTAGCC+TGG | + | chr3.2:82547177-82547196 | None:intergenic | 45.0% | |
| ATCTTGGCCCTGTCAAATTC+AGG | + | chr3.2:82547006-82547025 | None:intergenic | 45.0% | |
| ATTGGATCTCAGAAGCTCAC+AGG | - | chr3.2:82547436-82547455 | MS.gene055497:CDS | 45.0% | |
| ATTGTTCCACTAGCATCTGC+TGG | + | chr3.2:82547414-82547433 | None:intergenic | 45.0% | |
| CAGAAGCTCACAGGAACAAT+TGG | - | chr3.2:82547445-82547464 | MS.gene055497:CDS | 45.0% | |
| CTCAAGTCCAACCAAGTCTT+TGG | + | chr3.2:82547318-82547337 | None:intergenic | 45.0% | |
| GAAAAGGGAAAGTCACCAAG+AGG | - | chr3.2:82546931-82546950 | MS.gene055497:CDS | 45.0% | |
| GATGCCTCTGCTTATGTAGT+TGG | - | chr3.2:82547480-82547499 | MS.gene055497:CDS | 45.0% | |
| TACCTTGTTCTCTTCACTCC+AGG | - | chr3.2:82547156-82547175 | MS.gene055497:CDS | 45.0% | |
| TCTTATCCAGCAGATGCTAG+TGG | - | chr3.2:82547405-82547424 | MS.gene055497:CDS | 45.0% | |
| TGAAGCAGCTGATGTGTCAA+AGG | + | chr3.2:82547634-82547653 | None:intergenic | 45.0% | |
| TGACAGGGCCAAGATTCAAT+TGG | - | chr3.2:82547011-82547030 | MS.gene055497:CDS | 45.0% | |
| TTATCCCTGCACCAAAGACT+TGG | - | chr3.2:82547304-82547323 | MS.gene055497:intron | 45.0% | |
| ! | CAAAGACTTGGTTGGACTTG+AGG | - | chr3.2:82547316-82547335 | MS.gene055497:intron | 45.0% |
| AGCCTGGAGTGAAGAGAACA+AGG | + | chr3.2:82547161-82547180 | None:intergenic | 50.0% | |
| CACATCAGCTGCTTCATCTC+AGG | - | chr3.2:82547638-82547657 | MS.gene055497:CDS | 50.0% | |
| GCTTCAGCTATGATGTGAGC+TGG | + | chr3.2:82546736-82546755 | None:intergenic | 50.0% | |
| TCTCTTCACTCCAGGCTACA+AGG | - | chr3.2:82547164-82547183 | MS.gene055497:CDS | 50.0% | |
| ! | CCAACCAAGTCTTTGGTGCA+GGG | + | chr3.2:82547311-82547330 | None:intergenic | 50.0% |
| ! | TCCAACCAAGTCTTTGGTGC+AGG | + | chr3.2:82547312-82547331 | None:intergenic | 50.0% |
| CTAGGACTAGGAGTCCCTCT+TGG | + | chr3.2:82546949-82546968 | None:intergenic | 55.0% | |
| ! | CCCTGCACCAAAGACTTGGT+TGG | - | chr3.2:82547308-82547327 | MS.gene055497:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82546342 | 82547671 | 82546342 | ID=MS.gene055497 |
| chr3.2 | mRNA | 82546342 | 82547671 | 82546342 | ID=MS.gene055497.t1;Parent=MS.gene055497 |
| chr3.2 | exon | 82547624 | 82547671 | 82547624 | ID=MS.gene055497.t1.exon1;Parent=MS.gene055497.t1 |
| chr3.2 | CDS | 82547624 | 82547671 | 82547624 | ID=cds.MS.gene055497.t1;Parent=MS.gene055497.t1 |
| chr3.2 | exon | 82547401 | 82547505 | 82547401 | ID=MS.gene055497.t1.exon2;Parent=MS.gene055497.t1 |
| chr3.2 | CDS | 82547401 | 82547505 | 82547401 | ID=cds.MS.gene055497.t1;Parent=MS.gene055497.t1 |
| chr3.2 | exon | 82546342 | 82547298 | 82546342 | ID=MS.gene055497.t1.exon3;Parent=MS.gene055497.t1 |
| chr3.2 | CDS | 82546342 | 82547298 | 82546342 | ID=cds.MS.gene055497.t1;Parent=MS.gene055497.t1 |
| Gene Sequence |
| Protein sequence |
