Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062240.t1 | RHN45016.1 | 92.3 | 310 | 24 | 0 | 385 | 694 | 420 | 729 | 9.20E-174 | 620.5 |
| MS.gene062240.t1 | RHN45016.1 | 89.2 | 37 | 4 | 0 | 1 | 37 | 1 | 37 | 1.80E-07 | 68.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062240.t1 | Q9Y222 | 25.8 | 256 | 173 | 7 | 415 | 665 | 156 | 399 | 5.5e-18 | 94.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062240.t1 | A0A396GV57 | 92.3 | 310 | 24 | 0 | 385 | 694 | 420 | 729 | 6.6e-174 | 620.5 |
| MS.gene062240.t1 | A0A396GV57 | 89.2 | 37 | 4 | 0 | 1 | 37 | 1 | 37 | 1.3e-07 | 68.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene062240.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene062240 | 0.801212 | 1.00E-48 | -1.69E-46 |
| MS.gene050689 | MS.gene062240 | 0.822952 | 1.80E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene062240 | 0.845834 | 3.17E-59 | -1.69E-46 |
| MS.gene053008 | MS.gene062240 | 0.846613 | 1.95E-59 | -1.69E-46 |
| MS.gene05517 | MS.gene062240 | 0.807176 | 5.74E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene062240 | 0.84301 | 1.82E-58 | -1.69E-46 |
| MS.gene060803 | MS.gene062240 | 0.812285 | 4.58E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062240.t1 | MTR_8g077990 | 80.733 | 737 | 55 | 8 | 1 | 694 | 1 | 693 | 0.0 | 1008 |
| MS.gene062240.t1 | MTR_1g076600 | 95.050 | 101 | 5 | 0 | 594 | 694 | 55 | 155 | 1.37e-66 | 216 |
| MS.gene062240.t1 | MTR_7g029435 | 93.478 | 92 | 6 | 0 | 603 | 694 | 1 | 92 | 4.02e-57 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062240.t1 | AT5G41020 | 54.770 | 283 | 127 | 1 | 409 | 691 | 302 | 583 | 4.95e-112 | 350 |
Find 135 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAAATTCCAGCTCTTC+AGG | 0.282279 | 1.1:-57466354 | None:intergenic |
| AACAAATGATCCACCATATT+GGG | 0.286872 | 1.1:+57466838 | MS.gene062240:CDS |
| GAAGATCAAAGCAGCTGTTT+TGG | 0.293853 | 1.1:+57466149 | MS.gene062240:CDS |
| ACATTGCTTTCGGACATATA+TGG | 0.300898 | 1.1:-57464953 | None:intergenic |
| CATTGAGCAGGTGGAAGTTC+TGG | 0.301208 | 1.1:+57466881 | MS.gene062240:CDS |
| GTCACTATACTCCTTAAGTT+TGG | 0.317240 | 1.1:-57465737 | None:intergenic |
| TTGATCTTCTCATCTTCTTC+GGG | 0.322099 | 1.1:-57466135 | None:intergenic |
| TTTGATCTTCTCATCTTCTT+CGG | 0.324153 | 1.1:-57466136 | None:intergenic |
| GAACAAATGATCCACCATAT+TGG | 0.329038 | 1.1:+57466837 | MS.gene062240:CDS |
| GATAAACGCTTTATATGCTT+TGG | 0.342448 | 1.1:+57466737 | MS.gene062240:CDS |
| TATATAGATTCTCATGGTTT+GGG | 0.357329 | 1.1:+57466174 | MS.gene062240:CDS |
| GTATATAGATTCTCATGGTT+TGG | 0.365976 | 1.1:+57466173 | MS.gene062240:CDS |
| TTATGTGTGCCTTCTTCACT+TGG | 0.367399 | 1.1:-57465433 | None:intergenic |
| TCATCATCTTCACATTCATT+TGG | 0.373205 | 1.1:-57465667 | None:intergenic |
| GGAGGCAATTGGTCACAAAT+TGG | 0.375244 | 1.1:+57466614 | MS.gene062240:CDS |
| TCTCTATCTTTCAACAGGTT+AGG | 0.380269 | 1.1:-57466918 | None:intergenic |
| ACTCCTAACTCTGCACATAA+TGG | 0.384709 | 1.1:+57466024 | MS.gene062240:CDS |
| TTTCCAGCAGCCTCTAACCT+CGG | 0.387533 | 1.1:-57466238 | None:intergenic |
| GTTCCATTATGTGCAGAGTT+AGG | 0.391649 | 1.1:-57466027 | None:intergenic |
| GAGGGCAGTAGCCGACGCTT+TGG | 0.393084 | 1.1:+57466407 | MS.gene062240:CDS |
| TGGCTGCATGCTCCCCAATA+TGG | 0.395764 | 1.1:-57466851 | None:intergenic |
| CAGATCAGCTACATTGCTTT+CGG | 0.400572 | 1.1:-57464963 | None:intergenic |
| CTCTATCTTTCAACAGGTTA+GGG | 0.404823 | 1.1:-57466917 | None:intergenic |
| CATTGGTTGCTAGTGGTGAT+TGG | 0.407410 | 1.1:+57466691 | MS.gene062240:CDS |
| GGGAGACGAAGGTCTTGATA+TGG | 0.410993 | 1.1:+57466194 | MS.gene062240:CDS |
| TTCCAGCAGCCTCTAACCTC+GGG | 0.411822 | 1.1:-57466237 | None:intergenic |
| AGGCCTCTCTATCTTTCAAC+AGG | 0.417278 | 1.1:-57466923 | None:intergenic |
| AGAAGCAATGAAGGTGATAA+TGG | 0.417384 | 1.1:+57465190 | MS.gene062240:CDS |
| GTTTCATTATGTGCACAGTT+AGG | 0.421260 | 1.1:-57466003 | None:intergenic |
| TAGCCCTCTCGAGCAGATCT+AGG | 0.424550 | 1.1:-57466539 | None:intergenic |
| AAAGGGAGGGGAGGTGTAAG+TGG | 0.424706 | 1.1:+57466328 | MS.gene062240:CDS |
| GTTGCGAGATAATATTTGTT+GGG | 0.434220 | 1.1:+57466593 | MS.gene062240:CDS |
| AAATTACACCCCGAGGTTAG+AGG | 0.442409 | 1.1:+57466228 | MS.gene062240:CDS |
| GTTTCATTACGTGCACAGTT+AGG | 0.446203 | 1.1:-57465871 | None:intergenic |
| AGGGCAGTAGCCGACGCTTT+GGG | 0.446431 | 1.1:+57466408 | MS.gene062240:CDS |
| GCTGCATGGAGGAGGTAGAC+TGG | 0.446516 | 1.1:+57466766 | MS.gene062240:CDS |
| CTAAACGCAAACAAGTAACT+TGG | 0.447239 | 1.1:+57466052 | MS.gene062240:CDS |
| TGCTCATGCTTTGTTAGAAA+GGG | 0.448940 | 1.1:+57466311 | MS.gene062240:CDS |
| TAGAAGCAATGGAGGTGAAG+TGG | 0.456414 | 1.1:+57465564 | MS.gene062240:CDS |
| GTGCTCATGCTTTGTTAGAA+AGG | 0.460254 | 1.1:+57466310 | MS.gene062240:CDS |
| AATATTTGTTGGGAGGCAAT+TGG | 0.463198 | 1.1:+57466603 | MS.gene062240:CDS |
| ACACTGTAATGAGGCCTCTC+AGG | 0.470045 | 1.1:-57466279 | None:intergenic |
| TGCTTTGGATGCTTGCTGCA+TGG | 0.479442 | 1.1:+57466752 | MS.gene062240:CDS |
| ACGGCTTATTGCGTGGGAAA+AGG | 0.484774 | 1.1:+57466106 | MS.gene062240:CDS |
| AAGAAGCAGAAATTAATTGA+AGG | 0.487991 | 1.1:+57465514 | MS.gene062240:CDS |
| TGTTGCGAGATAATATTTGT+TGG | 0.489321 | 1.1:+57466592 | MS.gene062240:CDS |
| GTCAGTGAAGTTAATGATCA+AGG | 0.490585 | 1.1:+57465931 | MS.gene062240:CDS |
| GGATGCTTGCTGCATGGAGG+AGG | 0.492182 | 1.1:+57466758 | MS.gene062240:CDS |
| AAGAAGAAACCAAGTGAAGA+AGG | 0.493411 | 1.1:+57465424 | MS.gene062240:CDS |
| AAGTGAAGAAAGTAAACATA+AGG | 0.498172 | 1.1:+57465627 | MS.gene062240:CDS |
| TGAAGGTGATAATGGCGAGC+AGG | 0.499793 | 1.1:+57465198 | MS.gene062240:CDS |
| TCAGCATCACCTTCATTGCC+AGG | 0.508437 | 1.1:-57465895 | None:intergenic |
| ATAGGTCTGGTGATGTATGC+AGG | 0.510035 | 1.1:+57466805 | MS.gene062240:CDS |
| TGTAATGACTTTAGAAGCAA+TGG | 0.511180 | 1.1:+57465553 | MS.gene062240:CDS |
| AACAACTTTAGAAGCAATGA+AGG | 0.512264 | 1.1:+57465181 | MS.gene062240:CDS |
| TAAGTGGACACCTGAAGAGC+TGG | 0.512398 | 1.1:+57466344 | MS.gene062240:CDS |
| GAGCGAGGAAAGCAAACATA+AGG | 0.513952 | 1.1:+57465249 | MS.gene062240:CDS |
| AATTGAGGAAGCCAAACTTA+AGG | 0.514474 | 1.1:+57465726 | MS.gene062240:CDS |
| AGTGACATTATAAGCAATGA+AGG | 0.517478 | 1.1:+57465754 | MS.gene062240:CDS |
| TGCTGTGACGGCTTATTGCG+TGG | 0.519484 | 1.1:+57466099 | MS.gene062240:CDS |
| TTTGGGTAAAAGTCGAGATC+AGG | 0.519802 | 1.1:+57466425 | MS.gene062240:CDS |
| GAAGAAGAAGAAACTAATTG+AGG | 0.520193 | 1.1:+57465711 | MS.gene062240:CDS |
| AGCCAAGTCATTCATTGAGC+AGG | 0.521908 | 1.1:+57466869 | MS.gene062240:CDS |
| ACCCCGAGGTTAGAGGCTGC+TGG | 0.523066 | 1.1:+57466235 | MS.gene062240:CDS |
| AATCTACTTGAGCATAGGTC+TGG | 0.523977 | 1.1:+57466792 | MS.gene062240:CDS |
| CTGCATGGAGGAGGTAGACT+GGG | 0.526890 | 1.1:+57466767 | MS.gene062240:CDS |
| GTCACTGAAGTTAACGATGA+AGG | 0.527321 | 1.1:+57465799 | MS.gene062240:CDS |
| AAAAGCAATAAAAGTGAAGA+TGG | 0.528970 | 1.1:+57464995 | MS.gene062240:CDS |
| CGAGCAATTAACATCAGCAT+TGG | 0.533412 | 1.1:+57466674 | MS.gene062240:CDS |
| AAGAAGCGGAAGCTAGTTGA+AGG | 0.534153 | 1.1:+57465139 | MS.gene062240:CDS |
| TTGGAGTATATAGATTCTCA+TGG | 0.535104 | 1.1:+57466168 | MS.gene062240:CDS |
| AAGTGAAGAAGGCACACATA+AGG | 0.535379 | 1.1:+57465435 | MS.gene062240:CDS |
| AAAAGTGAAGATGGCGAGCA+AGG | 0.538269 | 1.1:+57465004 | MS.gene062240:CDS |
| CATATATGGATCACCTCCAT+TGG | 0.545409 | 1.1:-57464939 | None:intergenic |
| CATATAAAGCGTTTATCAAG+CGG | 0.546556 | 1.1:-57466731 | None:intergenic |
| AATCACAGGTTTGTTGTCAA+AGG | 0.550299 | 1.1:-57466943 | None:intergenic |
| ACGAGCAACATGGATCTAGT+TGG | 0.551620 | 1.1:+57466385 | MS.gene062240:CDS |
| AACTTGGGCTGATGAGGTGG+AGG | 0.553676 | 1.1:+57466068 | MS.gene062240:CDS |
| GTTTATCAAGCGGAAGTCAT+CGG | 0.557461 | 1.1:-57466721 | None:intergenic |
| ACAAGTAACTTGGGCTGATG+AGG | 0.559174 | 1.1:+57466062 | MS.gene062240:CDS |
| AATGAAACTCCTGGCAATGA+AGG | 0.566619 | 1.1:+57465886 | MS.gene062240:CDS |
| TGTGCACGTAATGAAACTCC+TGG | 0.570515 | 1.1:+57465877 | MS.gene062240:CDS |
| CGGTTATACACACTGTAATG+AGG | 0.572231 | 1.1:-57466288 | None:intergenic |
| CATGCTTTGTTAGAAAGGGA+GGG | 0.573971 | 1.1:+57466315 | MS.gene062240:CDS |
| AGTAACTTGGGCTGATGAGG+TGG | 0.573985 | 1.1:+57466065 | MS.gene062240:CDS |
| TCATGCTTTGTTAGAAAGGG+AGG | 0.576855 | 1.1:+57466314 | MS.gene062240:CDS |
| AGAAGCAATGGAGGTGAAGT+GGG | 0.578157 | 1.1:+57465565 | MS.gene062240:CDS |
| TAGAAACCTCAACAAATCAC+AGG | 0.579568 | 1.1:-57466957 | None:intergenic |
| GAAGGTGATAATGGCGAGCA+GGG | 0.580967 | 1.1:+57465199 | MS.gene062240:CDS |
| ATGCTTTGTTAGAAAGGGAG+GGG | 0.581640 | 1.1:+57466316 | MS.gene062240:CDS |
| CACCTGCTCAATGAATGACT+TGG | 0.584077 | 1.1:-57466871 | None:intergenic |
| AACAAACCTGTGATTTGTTG+AGG | 0.586181 | 1.1:+57466951 | MS.gene062240:CDS |
| AGCAACATGGATCTAGTTGG+AGG | 0.586815 | 1.1:+57466388 | MS.gene062240:CDS |
| GCGAGATAATATTTGTTGGG+AGG | 0.587211 | 1.1:+57466596 | MS.gene062240:CDS |
| ACATCAGCATTGGTTGCTAG+TGG | 0.590714 | 1.1:+57466684 | MS.gene062240:CDS |
| GAGGAGAAGTTATGCTGTGA+CGG | 0.590970 | 1.1:+57466087 | MS.gene062240:CDS |
| GTGATGTATGCAGGCAACGA+TGG | 0.597896 | 1.1:+57466814 | MS.gene062240:CDS |
| AGAAGCAATGATGATGAAGA+TGG | 0.598793 | 1.1:+57465376 | MS.gene062240:CDS |
| GACGACGAGGGTGAAACCAA+TGG | 0.599409 | 1.1:+57464923 | MS.gene062240:CDS |
| CTGCATGCTCCCCAATATGG+TGG | 0.600862 | 1.1:-57466848 | None:intergenic |
| TAAACGCAAACAAGTAACTT+GGG | 0.603412 | 1.1:+57466053 | MS.gene062240:CDS |
| TGAAGGAAACACACTTGAGG+AGG | 0.607482 | 1.1:+57465156 | MS.gene062240:CDS |
| AAACCTAGATCTGCTCGAGA+GGG | 0.608007 | 1.1:+57466536 | MS.gene062240:CDS |
| TAAACCTAGATCTGCTCGAG+AGG | 0.609475 | 1.1:+57466535 | MS.gene062240:CDS |
| TTGATCATTAACTTCACTGA+CGG | 0.613157 | 1.1:-57465929 | None:intergenic |
| AATTGAAGGAAGCACACTGA+AGG | 0.616212 | 1.1:+57465339 | MS.gene062240:CDS |
| GGGACAATCTACTTGAGCAT+AGG | 0.618965 | 1.1:+57466787 | MS.gene062240:CDS |
| TAACCTGTTGAAAGATAGAG+AGG | 0.620502 | 1.1:+57466920 | MS.gene062240:CDS |
| TGATGTATGCAGGCAACGAT+GGG | 0.621263 | 1.1:+57466815 | MS.gene062240:CDS |
| ACAAATGATCCACCATATTG+GGG | 0.622830 | 1.1:+57466839 | MS.gene062240:CDS |
| TCTCATGGTTTGGGAGACGA+AGG | 0.623440 | 1.1:+57466183 | MS.gene062240:CDS |
| CAAGTCATTCATTGAGCAGG+TGG | 0.627450 | 1.1:+57466872 | MS.gene062240:CDS |
| GAAAAGACCTACGAGCAACA+TGG | 0.630731 | 1.1:+57466375 | MS.gene062240:CDS |
| TTTCTAACAAAGCATGAGCA+CGG | 0.633278 | 1.1:-57466308 | None:intergenic |
| GCTGTGACGGCTTATTGCGT+GGG | 0.634153 | 1.1:+57466100 | MS.gene062240:CDS |
| GCAACATGGATCTAGTTGGA+GGG | 0.643237 | 1.1:+57466389 | MS.gene062240:CDS |
| TTTGGATGCTTGCTGCATGG+AGG | 0.643384 | 1.1:+57466755 | MS.gene062240:CDS |
| AATGAATGTGAAGATGATGA+TGG | 0.645642 | 1.1:+57465670 | MS.gene062240:CDS |
| ACTAGATCCATGTTGCTCGT+AGG | 0.645688 | 1.1:-57466382 | None:intergenic |
| GAGATCAGGTAAAAGATGCG+TGG | 0.653330 | 1.1:+57466439 | MS.gene062240:CDS |
| ACTTCACTGACGGAGAAACA+AGG | 0.654623 | 1.1:-57465919 | None:intergenic |
| AATGACTTTAGAAGCAATGG+AGG | 0.658645 | 1.1:+57465556 | MS.gene062240:CDS |
| CTTTGTTAGAAAGGGAGGGG+AGG | 0.659450 | 1.1:+57466319 | MS.gene062240:CDS |
| GAAGGAAACACACTTGAGGA+GGG | 0.660891 | 1.1:+57465157 | MS.gene062240:CDS |
| AAAAGGACATTGGTCCCAAG+AGG | 0.666914 | 1.1:+57466488 | MS.gene062240:CDS |
| AAATGTGAAGCTGATGACCA+AGG | 0.667189 | 1.1:+57465295 | MS.gene062240:CDS |
| AAATGTCAAATTACACCCCG+AGG | 0.668903 | 1.1:+57466221 | MS.gene062240:CDS |
| CAAAAGAACTGAAGACGACG+AGG | 0.676138 | 1.1:+57464910 | MS.gene062240:CDS |
| TCCAGCAGCCTCTAACCTCG+GGG | 0.681392 | 1.1:-57466236 | None:intergenic |
| TGTGAAGATGATGATGGCCA+AGG | 0.683186 | 1.1:+57465676 | MS.gene062240:CDS |
| AATGATTGTGAAGATGACCA+AGG | 0.698674 | 1.1:+57465478 | MS.gene062240:CDS |
| AGTTGAAGGAAACACACTTG+AGG | 0.699110 | 1.1:+57465153 | MS.gene062240:CDS |
| AAAAGAACTGAAGACGACGA+GGG | 0.720222 | 1.1:+57464911 | MS.gene062240:CDS |
| GAATGTGAAGATGATGACCA+CGG | 0.736913 | 1.1:+57465103 | MS.gene062240:CDS |
| GACGAGGGTGAAACCAATGG+AGG | 0.742823 | 1.1:+57464926 | MS.gene062240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATACCAAAACAAAAAA+AGG | + | chr1.1:57466471-57466490 | MS.gene062240:CDS | 15.0% |
| !!! | TTGTTTTGGTATATTTTAAT+CGG | - | chr1.1:57466467-57466486 | None:intergenic | 15.0% |
| ! | AAAAGCAATAAAAGTGAAGA+TGG | + | chr1.1:57464995-57465014 | MS.gene062240:CDS | 25.0% |
| ! | AAGAAGCAGAAATTAATTGA+AGG | + | chr1.1:57465514-57465533 | MS.gene062240:CDS | 25.0% |
| ! | AAGTGAAGAAAGTAAACATA+AGG | + | chr1.1:57465627-57465646 | MS.gene062240:CDS | 25.0% |
| ! | ATGAAAAAGAAGCTAATTGA+AGG | + | chr1.1:57465325-57465344 | MS.gene062240:CDS | 25.0% |
| ! | CCTTATAAAAAATCACAACA+TGG | + | chr1.1:57466567-57466586 | MS.gene062240:CDS | 25.0% |
| ! | TATATAGATTCTCATGGTTT+GGG | + | chr1.1:57466174-57466193 | MS.gene062240:CDS | 25.0% |
| !!! | ATAAATTTTGATACTCCTCT+TGG | - | chr1.1:57466506-57466525 | None:intergenic | 25.0% |
| !!! | ATCTTCACTTTTATTGCTTT+TGG | - | chr1.1:57464996-57465015 | None:intergenic | 25.0% |
| !!! | CCATGTTGTGATTTTTTATA+AGG | - | chr1.1:57466570-57466589 | None:intergenic | 25.0% |
| !!! | TAAATTTTGATACTCCTCTT+GGG | - | chr1.1:57466505-57466524 | None:intergenic | 25.0% |
| AACAAATGATCCACCATATT+GGG | + | chr1.1:57466838-57466857 | MS.gene062240:CDS | 30.0% | |
| AATGAATGTGAAGATGATGA+TGG | + | chr1.1:57465100-57465119 | MS.gene062240:CDS | 30.0% | |
| AGTGACATTATAAGCAATGA+AGG | + | chr1.1:57465754-57465773 | MS.gene062240:CDS | 30.0% | |
| CCAAAACAAAAAAAGGACAT+TGG | + | chr1.1:57466478-57466497 | MS.gene062240:CDS | 30.0% | |
| GAAAGAAGATGAAAAAGAAG+CGG | + | chr1.1:57465125-57465144 | MS.gene062240:CDS | 30.0% | |
| GAAGAAGAAGAAACTAATTG+AGG | + | chr1.1:57465711-57465730 | MS.gene062240:CDS | 30.0% | |
| GATAAACGCTTTATATGCTT+TGG | + | chr1.1:57466737-57466756 | MS.gene062240:CDS | 30.0% | |
| GGGAAAGAAGAAAAAGAAAA+AGG | + | chr1.1:57465219-57465238 | MS.gene062240:CDS | 30.0% | |
| GTATATAGATTCTCATGGTT+TGG | + | chr1.1:57466173-57466192 | MS.gene062240:CDS | 30.0% | |
| GTTGCGAGATAATATTTGTT+GGG | + | chr1.1:57466593-57466612 | MS.gene062240:CDS | 30.0% | |
| TAAACGCAAACAAGTAACTT+GGG | + | chr1.1:57466053-57466072 | MS.gene062240:CDS | 30.0% | |
| TCATCATCTTCACATTCATT+TGG | - | chr1.1:57465100-57465119 | None:intergenic | 30.0% | |
| TGTTGCGAGATAATATTTGT+TGG | + | chr1.1:57466592-57466611 | MS.gene062240:CDS | 30.0% | |
| TTGATCATTAACTTCACTGA+CGG | - | chr1.1:57465932-57465951 | None:intergenic | 30.0% | |
| TTGGAGTATATAGATTCTCA+TGG | + | chr1.1:57466168-57466187 | MS.gene062240:CDS | 30.0% | |
| TTTGATCTTCTCATCTTCTT+CGG | - | chr1.1:57466139-57466158 | None:intergenic | 30.0% | |
| ! | AACAACTTTAGAAGCAATGA+AGG | + | chr1.1:57465181-57465200 | MS.gene062240:CDS | 30.0% |
| ! | CATATAAAGCGTTTATCAAG+CGG | - | chr1.1:57466734-57466753 | None:intergenic | 30.0% |
| ! | TCTTCTTCATTTTCTTTCCT+TGG | - | chr1.1:57465696-57465715 | None:intergenic | 30.0% |
| ! | TGTAATGACTTTAGAAGCAA+TGG | + | chr1.1:57465553-57465572 | MS.gene062240:CDS | 30.0% |
| !! | CTTTTATTGCTTTTGGTCAA+AGG | - | chr1.1:57464989-57465008 | None:intergenic | 30.0% |
| !! | TCTTTTTCATCTTCTTTCCT+TGG | - | chr1.1:57465315-57465334 | None:intergenic | 30.0% |
| !! | TCTTTTTCGTCTTTTTTCCT+TGG | - | chr1.1:57465498-57465517 | None:intergenic | 30.0% |
| !!! | CCAATGTCCTTTTTTTGTTT+TGG | - | chr1.1:57466481-57466500 | None:intergenic | 30.0% |
| !!! | GTTCTTTTGTTTTTCTTGCT+CGG | - | chr1.1:57464899-57464918 | None:intergenic | 30.0% |
| AAGAAGAAACCAAGTGAAGA+AGG | + | chr1.1:57465424-57465443 | MS.gene062240:CDS | 35.0% | |
| AATGATTGTGAAGATGACCA+AGG | + | chr1.1:57465478-57465497 | MS.gene062240:CDS | 35.0% | |
| AATTGAGGAAGCCAAACTTA+AGG | + | chr1.1:57465726-57465745 | MS.gene062240:CDS | 35.0% | |
| ACAAATGATCCACCATATTG+GGG | + | chr1.1:57466839-57466858 | MS.gene062240:CDS | 35.0% | |
| ACATTGCTTTCGGACATATA+TGG | - | chr1.1:57464956-57464975 | None:intergenic | 35.0% | |
| AGAAGCAATGAAGGTGATAA+TGG | + | chr1.1:57465190-57465209 | MS.gene062240:CDS | 35.0% | |
| CTAAACGCAAACAAGTAACT+TGG | + | chr1.1:57466052-57466071 | MS.gene062240:CDS | 35.0% | |
| CTCTATCTTTCAACAGGTTA+GGG | - | chr1.1:57466920-57466939 | None:intergenic | 35.0% | |
| GAAAAAGGAAAAATTGAGCG+AGG | + | chr1.1:57465234-57465253 | MS.gene062240:CDS | 35.0% | |
| GAACAAATGATCCACCATAT+TGG | + | chr1.1:57466837-57466856 | MS.gene062240:CDS | 35.0% | |
| GTCACTATACTCCTTAAGTT+TGG | - | chr1.1:57465740-57465759 | None:intergenic | 35.0% | |
| GTCAGTGAAGTTAATGATCA+AGG | + | chr1.1:57465931-57465950 | MS.gene062240:CDS | 35.0% | |
| GTTTCATTATGTGCACAGTT+AGG | - | chr1.1:57466006-57466025 | None:intergenic | 35.0% | |
| TAACCTGTTGAAAGATAGAG+AGG | + | chr1.1:57466920-57466939 | MS.gene062240:CDS | 35.0% | |
| TCAATAAATTCCAGCTCTTC+AGG | - | chr1.1:57466357-57466376 | None:intergenic | 35.0% | |
| TCTCTATCTTTCAACAGGTT+AGG | - | chr1.1:57466921-57466940 | None:intergenic | 35.0% | |
| TTGATCTTCTCATCTTCTTC+GGG | - | chr1.1:57466138-57466157 | None:intergenic | 35.0% | |
| TTTCTAACAAAGCATGAGCA+CGG | - | chr1.1:57466311-57466330 | None:intergenic | 35.0% | |
| ! | AATATTTGTTGGGAGGCAAT+TGG | + | chr1.1:57466603-57466622 | MS.gene062240:CDS | 35.0% |
| ! | AATGACTTTAGAAGCAATGG+AGG | + | chr1.1:57465556-57465575 | MS.gene062240:CDS | 35.0% |
| ! | AGAAGCAATGATGATGAAGA+TGG | + | chr1.1:57465376-57465395 | MS.gene062240:CDS | 35.0% |
| ! | TGCTCATGCTTTGTTAGAAA+GGG | + | chr1.1:57466311-57466330 | MS.gene062240:CDS | 35.0% |
| !! | AATCACAGGTTTGTTGTCAA+AGG | - | chr1.1:57466946-57466965 | None:intergenic | 35.0% |
| !! | TCTTTTTCATCTTCTTTCCG+TGG | - | chr1.1:57465123-57465142 | None:intergenic | 35.0% |
| AAAAGAACTGAAGACGACGA+GGG | + | chr1.1:57464911-57464930 | MS.gene062240:CDS | 40.0% | |
| AAATGTCAAATTACACCCCG+AGG | + | chr1.1:57466221-57466240 | MS.gene062240:CDS | 40.0% | |
| AAATGTGAAGCTGATGACCA+AGG | + | chr1.1:57465295-57465314 | MS.gene062240:CDS | 40.0% | |
| AATCTACTTGAGCATAGGTC+TGG | + | chr1.1:57466792-57466811 | MS.gene062240:CDS | 40.0% | |
| AATGAAACTCCTGGCAATGA+AGG | + | chr1.1:57465886-57465905 | MS.gene062240:CDS | 40.0% | |
| ACTCCTAACTCTGCACATAA+TGG | + | chr1.1:57466024-57466043 | MS.gene062240:CDS | 40.0% | |
| AGTTGAAGGAAACACACTTG+AGG | + | chr1.1:57465153-57465172 | MS.gene062240:CDS | 40.0% | |
| CAGATCAGCTACATTGCTTT+CGG | - | chr1.1:57464966-57464985 | None:intergenic | 40.0% | |
| CATATATGGATCACCTCCAT+TGG | - | chr1.1:57464942-57464961 | None:intergenic | 40.0% | |
| CGAGCAATTAACATCAGCAT+TGG | + | chr1.1:57466674-57466693 | MS.gene062240:CDS | 40.0% | |
| CGGTTATACACACTGTAATG+AGG | - | chr1.1:57466291-57466310 | None:intergenic | 40.0% | |
| GAATGTGAAGATGATGACCA+CGG | + | chr1.1:57465103-57465122 | MS.gene062240:CDS | 40.0% | |
| GTCACTGAAGTTAACGATGA+AGG | + | chr1.1:57465799-57465818 | MS.gene062240:CDS | 40.0% | |
| GTTCCATTATGTGCAGAGTT+AGG | - | chr1.1:57466030-57466049 | None:intergenic | 40.0% | |
| GTTTATCAAGCGGAAGTCAT+CGG | - | chr1.1:57466724-57466743 | None:intergenic | 40.0% | |
| GTTTCATTACGTGCACAGTT+AGG | - | chr1.1:57465874-57465893 | None:intergenic | 40.0% | |
| TTATGTGTGCCTTCTTCACT+TGG | - | chr1.1:57465436-57465455 | None:intergenic | 40.0% | |
| TTTGGGTAAAAGTCGAGATC+AGG | + | chr1.1:57466425-57466444 | MS.gene062240:CDS | 40.0% | |
| ! | AAGTGAAGAAGGCACACATA+AGG | + | chr1.1:57465435-57465454 | MS.gene062240:CDS | 40.0% |
| ! | AATTGAAGGAAGCACACTGA+AGG | + | chr1.1:57465339-57465358 | MS.gene062240:CDS | 40.0% |
| ! | ATGCTTTGTTAGAAAGGGAG+GGG | + | chr1.1:57466316-57466335 | MS.gene062240:CDS | 40.0% |
| ! | CATGCTTTGTTAGAAAGGGA+GGG | + | chr1.1:57466315-57466334 | MS.gene062240:CDS | 40.0% |
| ! | GAAGATCAAAGCAGCTGTTT+TGG | + | chr1.1:57466149-57466168 | MS.gene062240:CDS | 40.0% |
| ! | GCGAGATAATATTTGTTGGG+AGG | + | chr1.1:57466596-57466615 | MS.gene062240:CDS | 40.0% |
| ! | GTGCTCATGCTTTGTTAGAA+AGG | + | chr1.1:57466310-57466329 | MS.gene062240:CDS | 40.0% |
| ! | TCATGCTTTGTTAGAAAGGG+AGG | + | chr1.1:57466314-57466333 | MS.gene062240:CDS | 40.0% |
| AAAAGGACATTGGTCCCAAG+AGG | + | chr1.1:57466488-57466507 | MS.gene062240:CDS | 45.0% | |
| AAAAGTGAAGATGGCGAGCA+AGG | + | chr1.1:57465004-57465023 | MS.gene062240:CDS | 45.0% | |
| AAACCTAGATCTGCTCGAGA+GGG | + | chr1.1:57466536-57466555 | MS.gene062240:CDS | 45.0% | |
| AAATTACACCCCGAGGTTAG+AGG | + | chr1.1:57466228-57466247 | MS.gene062240:CDS | 45.0% | |
| AAGAAGCGGAAGCTAGTTGA+AGG | + | chr1.1:57465139-57465158 | MS.gene062240:CDS | 45.0% | |
| ACAAGTAACTTGGGCTGATG+AGG | + | chr1.1:57466062-57466081 | MS.gene062240:CDS | 45.0% | |
| ACGAGCAACATGGATCTAGT+TGG | + | chr1.1:57466385-57466404 | MS.gene062240:CDS | 45.0% | |
| ACTAGATCCATGTTGCTCGT+AGG | - | chr1.1:57466385-57466404 | None:intergenic | 45.0% | |
| ACTTCACTGACGGAGAAACA+AGG | - | chr1.1:57465922-57465941 | None:intergenic | 45.0% | |
| AGAAGCAATGGAGGTGAAGT+GGG | + | chr1.1:57465565-57465584 | MS.gene062240:CDS | 45.0% | |
| AGCAACATGGATCTAGTTGG+AGG | + | chr1.1:57466388-57466407 | MS.gene062240:CDS | 45.0% | |
| AGCCAAGTCATTCATTGAGC+AGG | + | chr1.1:57466869-57466888 | MS.gene062240:CDS | 45.0% | |
| AGGCCTCTCTATCTTTCAAC+AGG | - | chr1.1:57466926-57466945 | None:intergenic | 45.0% | |
| CAAAAGAACTGAAGACGACG+AGG | + | chr1.1:57464910-57464929 | MS.gene062240:CDS | 45.0% | |
| CAAGTCATTCATTGAGCAGG+TGG | + | chr1.1:57466872-57466891 | MS.gene062240:CDS | 45.0% | |
| CACCTGCTCAATGAATGACT+TGG | - | chr1.1:57466874-57466893 | None:intergenic | 45.0% | |
| GAAAAGACCTACGAGCAACA+TGG | + | chr1.1:57466375-57466394 | MS.gene062240:CDS | 45.0% | |
| GAAGGAAACACACTTGAGGA+GGG | + | chr1.1:57465157-57465176 | MS.gene062240:CDS | 45.0% | |
| GAGATCAGGTAAAAGATGCG+TGG | + | chr1.1:57466439-57466458 | MS.gene062240:CDS | 45.0% | |
| GAGCGAGGAAAGCAAACATA+AGG | + | chr1.1:57465249-57465268 | MS.gene062240:CDS | 45.0% | |
| GAGGAGAAGTTATGCTGTGA+CGG | + | chr1.1:57466087-57466106 | MS.gene062240:CDS | 45.0% | |
| GCAACATGGATCTAGTTGGA+GGG | + | chr1.1:57466389-57466408 | MS.gene062240:CDS | 45.0% | |
| GGAGGCAATTGGTCACAAAT+TGG | + | chr1.1:57466614-57466633 | MS.gene062240:CDS | 45.0% | |
| GGGACAATCTACTTGAGCAT+AGG | + | chr1.1:57466787-57466806 | MS.gene062240:CDS | 45.0% | |
| TAAACCTAGATCTGCTCGAG+AGG | + | chr1.1:57466535-57466554 | MS.gene062240:CDS | 45.0% | |
| TAGAAGCAATGGAGGTGAAG+TGG | + | chr1.1:57465564-57465583 | MS.gene062240:CDS | 45.0% | |
| TGAAGGAAACACACTTGAGG+AGG | + | chr1.1:57465156-57465175 | MS.gene062240:CDS | 45.0% | |
| TGATGTATGCAGGCAACGAT+GGG | + | chr1.1:57466815-57466834 | MS.gene062240:CDS | 45.0% | |
| TGTGCACGTAATGAAACTCC+TGG | + | chr1.1:57465877-57465896 | MS.gene062240:CDS | 45.0% | |
| ! | ATAGGTCTGGTGATGTATGC+AGG | + | chr1.1:57466805-57466824 | MS.gene062240:CDS | 45.0% |
| ! | CATTGGTTGCTAGTGGTGAT+TGG | + | chr1.1:57466691-57466710 | MS.gene062240:CDS | 45.0% |
| ! | GTGCATTTTGCTGCAAGAAG+TGG | + | chr1.1:57466649-57466668 | MS.gene062240:CDS | 45.0% |
| ! | TCGACTTTTACCCAAAGCGT+CGG | - | chr1.1:57466421-57466440 | None:intergenic | 45.0% |
| ! | TCGCAAAAAGCATACCTGAG+AGG | + | chr1.1:57466265-57466284 | MS.gene062240:CDS | 45.0% |
| !! | ACATCAGCATTGGTTGCTAG+TGG | + | chr1.1:57466684-57466703 | MS.gene062240:CDS | 45.0% |
| !! | TGTGAAGATGATGATGGCCA+AGG | + | chr1.1:57465676-57465695 | MS.gene062240:CDS | 45.0% |
| ACACTGTAATGAGGCCTCTC+AGG | - | chr1.1:57466282-57466301 | None:intergenic | 50.0% | |
| ACGGCTTATTGCGTGGGAAA+AGG | + | chr1.1:57466106-57466125 | MS.gene062240:CDS | 50.0% | |
| AGTAACTTGGGCTGATGAGG+TGG | + | chr1.1:57466065-57466084 | MS.gene062240:CDS | 50.0% | |
| CATTGAGCAGGTGGAAGTTC+TGG | + | chr1.1:57466881-57466900 | MS.gene062240:CDS | 50.0% | |
| CTTTGTTAGAAAGGGAGGGG+AGG | + | chr1.1:57466319-57466338 | MS.gene062240:CDS | 50.0% | |
| GGGAGACGAAGGTCTTGATA+TGG | + | chr1.1:57466194-57466213 | MS.gene062240:CDS | 50.0% | |
| GTGATGTATGCAGGCAACGA+TGG | + | chr1.1:57466814-57466833 | MS.gene062240:CDS | 50.0% | |
| TAAGTGGACACCTGAAGAGC+TGG | + | chr1.1:57466344-57466363 | MS.gene062240:CDS | 50.0% | |
| TCAGCATCACCTTCATTGCC+AGG | - | chr1.1:57465898-57465917 | None:intergenic | 50.0% | |
| TTTCCAGCAGCCTCTAACCT+CGG | - | chr1.1:57466241-57466260 | None:intergenic | 50.0% | |
| ! | TCTCATGGTTTGGGAGACGA+AGG | + | chr1.1:57466183-57466202 | MS.gene062240:CDS | 50.0% |
| ! | TGCTTTGGATGCTTGCTGCA+TGG | + | chr1.1:57466752-57466771 | MS.gene062240:CDS | 50.0% |
| ! | TTTGGATGCTTGCTGCATGG+AGG | + | chr1.1:57466755-57466774 | MS.gene062240:CDS | 50.0% |
| !! | GAAGGTGATAATGGCGAGCA+GGG | + | chr1.1:57465199-57465218 | MS.gene062240:CDS | 50.0% |
| !! | TGAAGGTGATAATGGCGAGC+AGG | + | chr1.1:57465198-57465217 | MS.gene062240:CDS | 50.0% |
| AACTTGGGCTGATGAGGTGG+AGG | + | chr1.1:57466068-57466087 | MS.gene062240:CDS | 55.0% | |
| CTGCATGCTCCCCAATATGG+TGG | - | chr1.1:57466851-57466870 | None:intergenic | 55.0% | |
| CTGCATGGAGGAGGTAGACT+GGG | + | chr1.1:57466767-57466786 | MS.gene062240:CDS | 55.0% | |
| GACGACGAGGGTGAAACCAA+TGG | + | chr1.1:57464923-57464942 | MS.gene062240:CDS | 55.0% | |
| GACGAGGGTGAAACCAATGG+AGG | + | chr1.1:57464926-57464945 | MS.gene062240:CDS | 55.0% | |
| GCTGTGACGGCTTATTGCGT+GGG | + | chr1.1:57466100-57466119 | MS.gene062240:CDS | 55.0% | |
| TAGCCCTCTCGAGCAGATCT+AGG | - | chr1.1:57466542-57466561 | None:intergenic | 55.0% | |
| TGCTGTGACGGCTTATTGCG+TGG | + | chr1.1:57466099-57466118 | MS.gene062240:CDS | 55.0% | |
| TGGCTGCATGCTCCCCAATA+TGG | - | chr1.1:57466854-57466873 | None:intergenic | 55.0% | |
| TTCCAGCAGCCTCTAACCTC+GGG | - | chr1.1:57466240-57466259 | None:intergenic | 55.0% | |
| ! | AAAGGGAGGGGAGGTGTAAG+TGG | + | chr1.1:57466328-57466347 | MS.gene062240:CDS | 55.0% |
| AGGGCAGTAGCCGACGCTTT+GGG | + | chr1.1:57466408-57466427 | MS.gene062240:CDS | 60.0% | |
| GCTGCATGGAGGAGGTAGAC+TGG | + | chr1.1:57466766-57466785 | MS.gene062240:CDS | 60.0% | |
| TCCAGCAGCCTCTAACCTCG+GGG | - | chr1.1:57466239-57466258 | None:intergenic | 60.0% | |
| ! | GGATGCTTGCTGCATGGAGG+AGG | + | chr1.1:57466758-57466777 | MS.gene062240:CDS | 60.0% |
| ACCCCGAGGTTAGAGGCTGC+TGG | + | chr1.1:57466235-57466254 | MS.gene062240:CDS | 65.0% | |
| GAGGGCAGTAGCCGACGCTT+TGG | + | chr1.1:57466407-57466426 | MS.gene062240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 57464887 | 57466971 | 57464887 | ID=MS.gene062240 |
| chr1.1 | mRNA | 57464887 | 57466971 | 57464887 | ID=MS.gene062240.t1;Parent=MS.gene062240 |
| chr1.1 | exon | 57464887 | 57466971 | 57464887 | ID=MS.gene062240.t1.exon1;Parent=MS.gene062240.t1 |
| chr1.1 | CDS | 57464887 | 57466971 | 57464887 | ID=cds.MS.gene062240.t1;Parent=MS.gene062240.t1 |
| Gene Sequence |
| Protein sequence |
