AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062598

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062598.t1 MTR_2g078210 94.097 288 11 2 19 300 29 316 0.0 556
MS.gene062598.t1 MTR_2g078210 96.484 256 9 0 45 300 1 256 0.0 516
MS.gene062598.t1 MTR_2g015370 47.500 280 133 6 11 280 7 282 6.45e-77 236
MS.gene062598.t1 MTR_4g050480 43.636 165 93 0 60 224 98 262 5.17e-34 129
MS.gene062598.t1 MTR_4g050480 43.636 165 93 0 60 224 99 263 5.30e-34 129
MS.gene062598.t1 MTR_1g095740 37.427 171 97 4 59 222 142 309 8.58e-30 118
MS.gene062598.t1 MTR_6g033415 36.517 178 102 4 52 222 101 274 5.51e-29 115
MS.gene062598.t1 MTR_1g066800 35.260 173 102 3 51 218 114 281 9.24e-27 109
MS.gene062598.t1 MTR_1g066800 35.260 173 102 3 51 218 109 276 1.07e-26 109
MS.gene062598.t1 MTR_7g100790 35.928 167 106 1 59 224 109 275 3.16e-25 105
MS.gene062598.t1 MTR_3g104570 36.872 179 103 5 60 229 93 270 2.85e-23 99.4
MS.gene062598.t1 MTR_4g087420 31.892 185 106 5 49 218 137 316 3.09e-20 90.9
MS.gene062598.t1 MTR_8g024540 31.183 186 102 8 58 224 127 305 6.02e-16 78.2
MS.gene062598.t1 MTR_8g017570 30.570 193 126 3 60 244 92 284 8.73e-15 74.7
MS.gene062598.t1 MTR_2g099780 32.370 173 107 3 60 222 80 252 4.42e-12 66.6
MS.gene062598.t1 MTR_1g007920 27.692 195 114 5 60 227 99 293 3.80e-11 63.9
MS.gene062598.t1 MTR_1g007920 27.692 195 114 5 60 227 124 318 5.04e-11 63.5
MS.gene062598.t1 MTR_0047s0040 28.994 169 103 4 54 216 97 254 6.62e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062598.t1 AT3G15050 59.184 196 75 2 34 227 27 219 1.49e-80 244
MS.gene062598.t1 AT2G33990 49.500 200 96 3 60 256 49 246 2.10e-64 203
MS.gene062598.t1 AT3G22190 36.000 225 141 2 57 279 87 310 1.48e-32 124
MS.gene062598.t1 AT3G22190 36.000 225 141 2 57 279 87 310 1.48e-32 124
MS.gene062598.t1 AT3G22190 36.000 225 141 2 57 279 87 310 1.48e-32 124
MS.gene062598.t1 AT3G22190 36.000 225 141 2 57 279 87 310 1.48e-32 124
MS.gene062598.t1 AT2G26180 40.805 174 95 3 60 225 86 259 3.61e-31 120
MS.gene062598.t1 AT2G26410 35.882 170 100 4 60 223 150 316 8.68e-28 112
MS.gene062598.t1 AT2G26410 35.882 170 100 4 60 223 150 316 8.68e-28 112
MS.gene062598.t1 AT3G52290 35.057 174 108 3 51 222 101 271 1.65e-27 111
MS.gene062598.t1 AT5G03040 33.010 206 122 5 33 229 89 287 5.12e-26 107
MS.gene062598.t1 AT5G03040 33.010 206 122 5 33 229 89 287 5.12e-26 107
MS.gene062598.t1 AT5G03040 33.010 206 122 5 33 229 89 287 5.12e-26 107
MS.gene062598.t1 AT1G72670 34.884 172 104 3 60 225 95 264 7.39e-26 106
MS.gene062598.t1 AT3G09710 35.119 168 100 2 60 222 110 273 2.31e-25 105
MS.gene062598.t1 AT3G09710 33.516 182 98 4 60 222 110 287 1.43e-24 103
MS.gene062598.t1 AT3G59690 33.140 172 102 7 46 214 157 318 1.10e-23 100
MS.gene062598.t1 AT3G59690 33.140 172 102 7 46 214 157 318 1.10e-23 100
MS.gene062598.t1 AT1G17480 31.429 175 98 4 41 213 85 239 4.55e-22 95.1
MS.gene062598.t1 AT2G43680 30.811 185 88 9 46 214 310 470 8.04e-18 84.0
MS.gene062598.t1 AT2G43680 30.811 185 88 9 46 214 310 470 8.04e-18 84.0
MS.gene062598.t1 AT2G43680 30.811 185 88 9 46 214 310 470 8.04e-18 84.0
MS.gene062598.t1 AT2G43680 30.811 185 88 9 46 214 310 470 8.04e-18 84.0
MS.gene062598.t1 AT2G43680 30.811 185 88 9 46 214 311 471 8.50e-18 84.0
MS.gene062598.t1 AT3G49260 25.888 197 120 4 60 236 122 312 4.36e-17 81.6
MS.gene062598.t1 AT3G49260 25.888 197 120 4 60 236 122 312 4.36e-17 81.6
MS.gene062598.t1 AT3G49260 25.888 197 120 4 60 236 122 312 4.36e-17 81.6
MS.gene062598.t1 AT3G49260 26.263 198 119 4 60 236 122 313 5.48e-17 81.3
MS.gene062598.t1 AT4G00820 27.014 211 125 6 33 225 112 311 8.16e-16 78.2
MS.gene062598.t1 AT1G01110 24.775 222 144 7 23 225 86 303 1.68e-12 68.2

Find 75 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGCATTTCGTTCATTTA+TGG 0.156996 2.1:+22294606 MS.gene062598:CDS
GCCGTTGAGTTTCTTTGTTT+TGG 0.177224 2.1:-22296441 None:intergenic
GTGGTTCATCTTATCTAATT+TGG 0.248605 2.1:-22296477 None:intergenic
GAAGAACATTTCAACATCTA+AGG 0.257374 2.1:+22295793 MS.gene062598:CDS
CCAAACTGTAACCAGTATTT+TGG 0.272065 2.1:+22296317 MS.gene062598:CDS
CAGCGCGCCCTTGGGAGGTT+CGG 0.278767 2.1:+22296402 MS.gene062598:CDS
CTCCATCATCAAACCTTCAT+TGG 0.319760 2.1:-22294533 None:intergenic
CTAATTTGGTCTTCTGCTGC+TGG 0.344502 2.1:-22296463 None:intergenic
TGTTGTTCCTGTTTGGTCTC+TGG 0.347194 2.1:-22295856 None:intergenic
GTTGGGTTGCAGCGCGCCCT+TGG 0.356093 2.1:+22296393 MS.gene062598:CDS
TGGAGAGGACAGTTCCTTCC+AGG 0.372133 2.1:+22294551 MS.gene062598:CDS
CCAAAATACTGGTTACAGTT+TGG 0.386021 2.1:-22296317 None:intergenic
CACTTAACTACATACATTCA+TGG 0.393069 2.1:+22295877 MS.gene062598:CDS
GGCATATGCTTTCTCTCATC+AGG 0.394693 2.1:+22296213 MS.gene062598:CDS
ACTAAAGCTGCCATGTCAAA+TGG 0.395308 2.1:+22296533 MS.gene062598:CDS
TCTCATTATGAACCTTGCTT+TGG 0.408069 2.1:+22294405 None:intergenic
TTGGGTTGCAGCGCGCCCTT+GGG 0.409869 2.1:+22296394 MS.gene062598:CDS
TCTCTTAGCACTCTTTGAAC+AGG 0.422027 2.1:+22294450 MS.gene062598:CDS
ATGAAGCCTGACCAAAATAC+TGG 0.422336 2.1:-22296328 None:intergenic
AGTTAAGTGTTGTTCCTGTT+TGG 0.425963 2.1:-22295863 None:intergenic
TTGGAGCTGGATGGAACGTT+GGG 0.427818 2.1:+22296376 MS.gene062598:CDS
TTGATTCTTCATGAGGGCTA+TGG 0.431764 2.1:-22294501 None:intergenic
AGCGCGCCCTTGGGAGGTTC+GGG 0.435357 2.1:+22296403 MS.gene062598:CDS
AGGGCTATGGTTCCCATTGG+AGG 0.450209 2.1:-22294488 None:intergenic
TCCATCATCAAACCTTCATT+GGG 0.455643 2.1:-22294532 None:intergenic
GACATGGCAGCTTTAGTCAA+TGG 0.463459 2.1:-22296527 None:intergenic
AAGAAAGCTGGGGTTGGAGC+TGG 0.466713 2.1:+22296363 MS.gene062598:CDS
CAGGATTAAGCAAAAGAGAT+TGG 0.472339 2.1:+22295953 MS.gene062598:CDS
CTAAAGCTGCCATGTCAAAT+GGG 0.486923 2.1:+22296534 MS.gene062598:CDS
ATGAGGGCTATGGTTCCCAT+TGG 0.494385 2.1:-22294491 None:intergenic
AAGAACATTTCAACATCTAA+GGG 0.495562 2.1:+22295794 MS.gene062598:CDS
GTGTTACTTGATTCTTCATG+AGG 0.498076 2.1:-22294508 None:intergenic
GTTGGAGCTGGATGGAACGT+TGG 0.504247 2.1:+22296375 MS.gene062598:CDS
ATAGCCTTGGTAAAGAAAGC+TGG 0.504499 2.1:+22296351 MS.gene062598:CDS
GGTCAGGCTTCATATAGCCT+TGG 0.512035 2.1:+22296338 MS.gene062598:CDS
TTCACAATATTGCTGCTACT+CGG 0.514388 2.1:+22294578 MS.gene062598:CDS
TTGGTAAAGAAAGCTGGGGT+TGG 0.518496 2.1:+22296357 MS.gene062598:CDS
GGTTGCAGCGCGCCCTTGGG+AGG 0.525212 2.1:+22296397 MS.gene062598:CDS
TAGCCTTGGTAAAGAAAGCT+GGG 0.527594 2.1:+22296352 MS.gene062598:CDS
GGGCTATGGTTCCCATTGGA+GGG 0.533590 2.1:-22294487 None:intergenic
TCAAGTAACACTCCCAATGA+AGG 0.535092 2.1:+22294520 MS.gene062598:CDS
ACTTGAACCCGAACCTCCCA+AGG 0.538007 2.1:-22296410 None:intergenic
TCCCAATGAAGGTTTGATGA+TGG 0.538229 2.1:+22294531 MS.gene062598:CDS
CAATCTACTGAACCCTCCAA+TGG 0.545908 2.1:+22294475 MS.gene062598:CDS
GTGCAGCGGTTCTGAAACAA+TGG 0.546419 2.1:+22296129 MS.gene062598:CDS
ATCGCCATTAAAATCACCAT+TGG 0.547703 2.1:+22296574 MS.gene062598:CDS
AATCTACTGAACCCTCCAAT+GGG 0.550183 2.1:+22294476 MS.gene062598:CDS
GACACGGAAGCTTTAGCCAA+TGG 0.552731 2.1:-22296590 None:intergenic
CACATGGCCAGAGACCAAAC+AGG 0.554081 2.1:+22295849 MS.gene062598:CDS
AATGCGAAGGAGACTGAGAA+AGG 0.557321 2.1:+22296614 MS.gene062598:CDS
ACTCTCCTTCCCATTTGACA+TGG 0.564367 2.1:-22296543 None:intergenic
TAAACGTATCCCAGGTGGAA+TGG 0.564593 2.1:+22296107 MS.gene062598:intron
AGCTTCCGTGTCAAATGCGA+AGG 0.566653 2.1:+22296601 MS.gene062598:CDS
AGTCTCCTTCGCATTTGACA+CGG 0.580502 2.1:-22296606 None:intergenic
CTGTTTGGTCTCTGGCCATG+TGG 0.581097 2.1:-22295848 None:intergenic
AGCTGCCATGTCAAATGGGA+AGG 0.581376 2.1:+22296538 MS.gene062598:CDS
TGTGTATGATAACAGCAGCC+AGG 0.581859 2.1:+22295934 MS.gene062598:CDS
CAATGGAAGAGATACTATCA+AGG 0.583570 2.1:+22296146 MS.gene062598:CDS
AACCCCAGCTTTCTTTACCA+AGG 0.586825 2.1:-22296355 None:intergenic
AGCAATATTGTGAATCAACC+TGG 0.594625 2.1:-22294569 None:intergenic
ACACTGGATGTGCCAAAGCA+AGG 0.605480 2.1:-22294417 None:intergenic
TGTTACTTGATTCTTCATGA+GGG 0.616361 2.1:-22294507 None:intergenic
ATGAAGGTTTGATGATGGAG+AGG 0.619518 2.1:+22294536 MS.gene062598:CDS
TCCCAGGTGGAATGGTGCAG+CGG 0.626788 2.1:+22296115 MS.gene062598:intron
AAGAGAACAAGAAACAACAC+TGG 0.628724 2.1:-22294433 None:intergenic
AAGCTGGGGTTGGAGCTGGA+TGG 0.631067 2.1:+22296367 MS.gene062598:CDS
CCCAAAACAAAGAAACTCAA+CGG 0.631804 2.1:+22296440 MS.gene062598:CDS
GGCTAAGATTAATGAGCTCG+AGG 0.640406 2.1:+22295995 MS.gene062598:CDS
ATGAGAGAAAGCATATGCCA+TGG 0.645984 2.1:-22296209 None:intergenic
AATCAAACGAGAGCGAGCCA+TGG 0.651456 2.1:+22296192 MS.gene062598:CDS
AGCATTAATTCAAGACCACA+TGG 0.653384 2.1:+22295833 MS.gene062598:CDS
ATATTGTGAATCAACCTGGA+AGG 0.653405 2.1:-22294565 None:intergenic
CTTGAACCCGAACCTCCCAA+GGG 0.664743 2.1:-22296409 None:intergenic
AGAACATTTCAACATCTAAG+GGG 0.685065 2.1:+22295795 MS.gene062598:CDS
AGCCTTGGTAAAGAAAGCTG+GGG 0.725570 2.1:+22296353 MS.gene062598:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGCATTAAATCAAATTTAAA+TGG + chr2.1:22295317-22295336 MS.gene062598:intron 15.0%
!!! TCAAATTTTGATTTTAAGAA+AGG - chr2.1:22296265-22296284 None:intergenic 15.0%
!! AAAATTATCTGCCATATTAT+GGG - chr2.1:22295650-22295669 None:intergenic 20.0%
!! AAAATTCTATTTCCTTTAAG+TGG + chr2.1:22295038-22295057 MS.gene062598:intron 20.0%
!! AAAGTCATTATCAAAGTAAA+TGG - chr2.1:22295381-22295400 None:intergenic 20.0%
!! ATAAAGTTCTATACTATCAA+AGG + chr2.1:22295176-22295195 MS.gene062598:intron 20.0%
!! TAAAATTATCTGCCATATTA+TGG - chr2.1:22295651-22295670 None:intergenic 20.0%
!! TGTGAAAATTGTAGTAAAAA+TGG - chr2.1:22294666-22294685 None:intergenic 20.0%
!! TTTCAAACAGTTATAAAAGA+GGG - chr2.1:22295551-22295570 None:intergenic 20.0%
!!! CAAACTTAGTATTTTCATAA+GGG - chr2.1:22294989-22295008 None:intergenic 20.0%
!!! GTTTTAAATATCCCATAATA+TGG + chr2.1:22295636-22295655 MS.gene062598:intron 20.0%
!!! TAATTAACTTGTTGTTAAGA+AGG - chr2.1:22295608-22295627 None:intergenic 20.0%
!!! TTCACTTTTTTTATTACTAC+TGG + chr2.1:22295422-22295441 MS.gene062598:intron 20.0%
! AAATGCATTTCGTTCATTTA+TGG + chr2.1:22294606-22294625 MS.gene062598:CDS 25.0%
! AAATTTGATCACTAATGTCA+AGG + chr2.1:22296277-22296296 MS.gene062598:intron 25.0%
! AACAGAGATAACACTTTAAA+AGG - chr2.1:22296053-22296072 None:intergenic 25.0%
! AACTTAAAGCAATTATGTTC+AGG + chr2.1:22295454-22295473 MS.gene062598:intron 25.0%
! AAGAACATTTCAACATCTAA+GGG + chr2.1:22295794-22295813 MS.gene062598:CDS 25.0%
! AAGTATAGAAAAACAGATGA+GGG - chr2.1:22295584-22295603 None:intergenic 25.0%
! AAGTGTTATCTCTGTTATAT+TGG + chr2.1:22296057-22296076 MS.gene062598:intron 25.0%
! CTTTCAAACAGTTATAAAAG+AGG - chr2.1:22295552-22295571 None:intergenic 25.0%
! TAAGTATAGAAAAACAGATG+AGG - chr2.1:22295585-22295604 None:intergenic 25.0%
! TTAAGAAAGGATAAATCAAG+TGG - chr2.1:22296252-22296271 None:intergenic 25.0%
!! AAATCGACATTTCTAAAGAT+AGG - chr2.1:22295682-22295701 None:intergenic 25.0%
!! AATCGACATTTCTAAAGATA+GGG - chr2.1:22295681-22295700 None:intergenic 25.0%
!! AGATGAGCTTTTTAATCTTA+CGG - chr2.1:22294797-22294816 None:intergenic 25.0%
!! GAATATTTTGTATTTCCTCA+AGG + chr2.1:22295353-22295372 MS.gene062598:intron 25.0%
!! GCAAACTTAGTATTTTCATA+AGG - chr2.1:22294990-22295009 None:intergenic 25.0%
!! TTAGTCAATGGTGATTTTAA+TGG - chr2.1:22296518-22296537 None:intergenic 25.0%
!!! TTGATAATGACTTTAGAACA+TGG + chr2.1:22295387-22295406 MS.gene062598:intron 25.0%
AAAAAAAGTGAAGACACTAG+TGG - chr2.1:22295414-22295433 None:intergenic 30.0%
AAAAATCGCGAAATGCATAA+GGG - chr2.1:22294735-22294754 None:intergenic 30.0%
AACTAGACTATCACTAAAGA+AGG - chr2.1:22295295-22295314 None:intergenic 30.0%
AGAACATTTCAACATCTAAG+GGG + chr2.1:22295795-22295814 MS.gene062598:CDS 30.0%
CACTTAACTACATACATTCA+TGG + chr2.1:22295877-22295896 MS.gene062598:CDS 30.0%
CATGATTCCTTAACTACATA+GGG + chr2.1:22294910-22294929 MS.gene062598:intron 30.0%
GAAGAACATTTCAACATCTA+AGG + chr2.1:22295793-22295812 MS.gene062598:CDS 30.0%
GGAAAGTCAGTTAAAAATTG+AGG + chr2.1:22295974-22295993 MS.gene062598:CDS 30.0%
GTGGTTCATCTTATCTAATT+TGG - chr2.1:22296480-22296499 None:intergenic 30.0%
TAAAAATCGCGAAATGCATA+AGG - chr2.1:22294736-22294755 None:intergenic 30.0%
TAGTTCAGAAAACCAAAGTT+AGG - chr2.1:22294820-22294839 None:intergenic 30.0%
TTTGTGTAAACTTGATCCAA+TGG + chr2.1:22294861-22294880 MS.gene062598:intron 30.0%
! ATCGACATTTCTAAAGATAG+GGG - chr2.1:22295680-22295699 None:intergenic 30.0%
! ATTTTTGCTTTAGTAGACGA+AGG - chr2.1:22295023-22295042 None:intergenic 30.0%
! TGTTACTTGATTCTTCATGA+GGG - chr2.1:22294510-22294529 None:intergenic 30.0%
! TTAGCCAATGGTGATTTTAA+TGG - chr2.1:22296581-22296600 None:intergenic 30.0%
! TTATGCATTTCGCGATTTTT+AGG + chr2.1:22294735-22294754 MS.gene062598:intron 30.0%
! TTTTCATAAGGGTTAAGCAT+AGG - chr2.1:22294978-22294997 None:intergenic 30.0%
!! ATGGTGATTTTGTTTCATTG+TGG - chr2.1:22296499-22296518 None:intergenic 30.0%
AAAAGCTCATCTCCTAACTT+TGG + chr2.1:22294805-22294824 MS.gene062598:intron 35.0%
AAAATCGCGAAATGCATAAG+GGG - chr2.1:22294734-22294753 None:intergenic 35.0%
AAGAGAACAAGAAACAACAC+TGG - chr2.1:22294436-22294455 None:intergenic 35.0%
AGCAATATTGTGAATCAACC+TGG - chr2.1:22294572-22294591 None:intergenic 35.0%
AGCATTAATTCAAGACCACA+TGG + chr2.1:22295833-22295852 MS.gene062598:CDS 35.0%
ATATTGTGAATCAACCTGGA+AGG - chr2.1:22294568-22294587 None:intergenic 35.0%
ATCGCCATTAAAATCACCAT+TGG + chr2.1:22296574-22296593 MS.gene062598:CDS 35.0%
ATGTCAAGGTAATATTGCAG+TGG + chr2.1:22296291-22296310 MS.gene062598:intron 35.0%
CAACTTAACAAAGTGACATG+AGG + chr2.1:22295128-22295147 MS.gene062598:intron 35.0%
CAATGGAAGAGATACTATCA+AGG + chr2.1:22296146-22296165 MS.gene062598:CDS 35.0%
CAGGATTAAGCAAAAGAGAT+TGG + chr2.1:22295953-22295972 MS.gene062598:CDS 35.0%
CCATGATTCCTTAACTACAT+AGG + chr2.1:22294909-22294928 MS.gene062598:intron 35.0%
CCCAAAACAAAGAAACTCAA+CGG + chr2.1:22296440-22296459 MS.gene062598:CDS 35.0%
CCTATGTAGTTAAGGAATCA+TGG - chr2.1:22294912-22294931 None:intergenic 35.0%
CTAGATTCCCTATGTAGTTA+AGG - chr2.1:22294920-22294939 None:intergenic 35.0%
CTTAACTACATAGGGAATCT+AGG + chr2.1:22294918-22294937 MS.gene062598:intron 35.0%
TAACTATCACAGCCAGATTA+TGG - chr2.1:22296029-22296048 None:intergenic 35.0%
TCAAAGTAAATGGTACCTTG+AGG - chr2.1:22295371-22295390 None:intergenic 35.0%
TCCATCATCAAACCTTCATT+GGG - chr2.1:22294535-22294554 None:intergenic 35.0%
TGATTGCAAGGAAAGTTAGA+AGG - chr2.1:22295066-22295085 None:intergenic 35.0%
TTCACAATATTGCTGCTACT+CGG + chr2.1:22294578-22294597 MS.gene062598:CDS 35.0%
TTTCCTTGCAATCATAGACA+TGG + chr2.1:22295072-22295091 MS.gene062598:intron 35.0%
TTTGATGCAATCATACGATC+TGG - chr2.1:22294888-22294907 None:intergenic 35.0%
! ACATTTTGTAAACGTATCCC+AGG + chr2.1:22296099-22296118 MS.gene062598:intron 35.0%
! AGTTAAGTGTTGTTCCTGTT+TGG - chr2.1:22295866-22295885 None:intergenic 35.0%
! CAATCTCTTTTGCTTAATCC+TGG - chr2.1:22295955-22295974 None:intergenic 35.0%
! CCAAAATACTGGTTACAGTT+TGG - chr2.1:22296320-22296339 None:intergenic 35.0%
! CCAAACTGTAACCAGTATTT+TGG + chr2.1:22296317-22296336 MS.gene062598:CDS 35.0%
!! AGTTAGAAGGTACCACTTAA+AGG - chr2.1:22295053-22295072 None:intergenic 35.0%
!! GTGTTACTTGATTCTTCATG+AGG - chr2.1:22294511-22294530 None:intergenic 35.0%
!!! CCGTTGAGTTTCTTTGTTTT+GGG - chr2.1:22296443-22296462 None:intergenic 35.0%
!!! CGTTGAGTTTCTTTGTTTTG+GGG - chr2.1:22296442-22296461 None:intergenic 35.0%
!!! GTTGAGTTTCTTTGTTTTGG+GGG - chr2.1:22296441-22296460 None:intergenic 35.0%
AATCATACGATCTGGACCAT+TGG - chr2.1:22294880-22294899 None:intergenic 40.0%
AATCTACTGAACCCTCCAAT+GGG + chr2.1:22294476-22294495 MS.gene062598:CDS 40.0%
ACTAAAGCTGCCATGTCAAA+TGG + chr2.1:22296533-22296552 MS.gene062598:CDS 40.0%
ATGAAGCCTGACCAAAATAC+TGG - chr2.1:22296331-22296350 None:intergenic 40.0%
CTAAAGCTGCCATGTCAAAT+GGG + chr2.1:22296534-22296553 MS.gene062598:CDS 40.0%
CTCCATCATCAAACCTTCAT+TGG - chr2.1:22294536-22294555 None:intergenic 40.0%
TCAAGGTAATATTGCAGTGG+AGG + chr2.1:22296294-22296313 MS.gene062598:intron 40.0%
TCAAGTAACACTCCCAATGA+AGG + chr2.1:22294520-22294539 MS.gene062598:CDS 40.0%
TCCCAATGAAGGTTTGATGA+TGG + chr2.1:22294531-22294550 MS.gene062598:CDS 40.0%
TCTCTTAGCACTCTTTGAAC+AGG + chr2.1:22294450-22294469 MS.gene062598:CDS 40.0%
TGGAAGGGGAATTAAGTCAT+GGG + chr2.1:22295493-22295512 MS.gene062598:intron 40.0%
TTCTTCTTGCCTGCATACAT+AGG - chr2.1:22295779-22295798 None:intergenic 40.0%
TTGATTCTTCATGAGGGCTA+TGG - chr2.1:22294504-22294523 None:intergenic 40.0%
TTGCCTGCATACATAGGTAT+GGG - chr2.1:22295773-22295792 None:intergenic 40.0%
TTGGAAGGGGAATTAAGTCA+TGG + chr2.1:22295492-22295511 MS.gene062598:intron 40.0%
! ATAGCCTTGGTAAAGAAAGC+TGG + chr2.1:22296351-22296370 MS.gene062598:CDS 40.0%
! ATGAGAGAAAGCATATGCCA+TGG - chr2.1:22296212-22296231 None:intergenic 40.0%
! TAGCCTTGGTAAAGAAAGCT+GGG + chr2.1:22296352-22296371 MS.gene062598:CDS 40.0%
! TCATTGACTGCATGATTGCA+TGG - chr2.1:22294768-22294787 None:intergenic 40.0%
! TTTTGTAAACGTATCCCAGG+TGG + chr2.1:22296102-22296121 MS.gene062598:intron 40.0%
!! ACAGCTCTCTGATTTTGGAA+GGG + chr2.1:22295478-22295497 MS.gene062598:intron 40.0%
!! ATGAAGGTTTGATGATGGAG+AGG + chr2.1:22294536-22294555 MS.gene062598:CDS 40.0%
!! GCCGTTGAGTTTCTTTGTTT+TGG - chr2.1:22296444-22296463 None:intergenic 40.0%
!!! CTGTAACCAGTATTTTGGTC+AGG + chr2.1:22296322-22296341 MS.gene062598:CDS 40.0%
AACCCCAGCTTTCTTTACCA+AGG - chr2.1:22296358-22296377 None:intergenic 45.0%
AATGCGAAGGAGACTGAGAA+AGG + chr2.1:22296614-22296633 MS.gene062598:CDS 45.0%
ACTCTCCTTCCCATTTGACA+TGG - chr2.1:22296546-22296565 None:intergenic 45.0%
AGCCTTGGTAAAGAAAGCTG+GGG + chr2.1:22296353-22296372 MS.gene062598:CDS 45.0%
AGTCTCCTTCGCATTTGACA+CGG - chr2.1:22296609-22296628 None:intergenic 45.0%
CAATCTACTGAACCCTCCAA+TGG + chr2.1:22294475-22294494 MS.gene062598:CDS 45.0%
CAGCCATGTCTATGATTGCA+AGG - chr2.1:22295078-22295097 None:intergenic 45.0%
CTTGCCTGCATACATAGGTA+TGG - chr2.1:22295774-22295793 None:intergenic 45.0%
GAGGTAGTGTTGCCATAATC+TGG + chr2.1:22296014-22296033 MS.gene062598:intron 45.0%
GGCATATGCTTTCTCTCATC+AGG + chr2.1:22296213-22296232 MS.gene062598:CDS 45.0%
GGCTAAGATTAATGAGCTCG+AGG + chr2.1:22295995-22296014 MS.gene062598:CDS 45.0%
TAAACGTATCCCAGGTGGAA+TGG + chr2.1:22296107-22296126 MS.gene062598:intron 45.0%
TGCCTGCATACATAGGTATG+GGG - chr2.1:22295772-22295791 None:intergenic 45.0%
TGTGTATGATAACAGCAGCC+AGG + chr2.1:22295934-22295953 MS.gene062598:CDS 45.0%
TGTTGTTCCTGTTTGGTCTC+TGG - chr2.1:22295859-22295878 None:intergenic 45.0%
TTGGTAAAGAAAGCTGGGGT+TGG + chr2.1:22296357-22296376 MS.gene062598:CDS 45.0%
! CACAGCTCTCTGATTTTGGA+AGG + chr2.1:22295477-22295496 MS.gene062598:intron 45.0%
! CTAATTTGGTCTTCTGCTGC+TGG - chr2.1:22296466-22296485 None:intergenic 45.0%
! GACATGGCAGCTTTAGTCAA+TGG - chr2.1:22296530-22296549 None:intergenic 45.0%
!! CAGCTCTCTGATTTTGGAAG+GGG + chr2.1:22295479-22295498 MS.gene062598:intron 45.0%
!! TAATATACAAAAATAAAAAA+TGG + chr2.1:22294838-22294857 MS.gene062598:intron 5.0%
AATCAAACGAGAGCGAGCCA+TGG + chr2.1:22296192-22296211 MS.gene062598:CDS 50.0%
ACACTGGATGTGCCAAAGCA+AGG - chr2.1:22294420-22294439 None:intergenic 50.0%
AGCTGCCATGTCAAATGGGA+AGG + chr2.1:22296538-22296557 MS.gene062598:CDS 50.0%
AGCTTCCGTGTCAAATGCGA+AGG + chr2.1:22296601-22296620 MS.gene062598:CDS 50.0%
ATGAGGGCTATGGTTCCCAT+TGG - chr2.1:22294494-22294513 None:intergenic 50.0%
GCCTGCATACATAGGTATGG+GGG - chr2.1:22295771-22295790 None:intergenic 50.0%
GGTCAGGCTTCATATAGCCT+TGG + chr2.1:22296338-22296357 MS.gene062598:CDS 50.0%
TTGGAGCTGGATGGAACGTT+GGG + chr2.1:22296376-22296395 MS.gene062598:CDS 50.0%
! CAGGCACAGCTCTCTGATTT+TGG + chr2.1:22295473-22295492 MS.gene062598:intron 50.0%
! GACACGGAAGCTTTAGCCAA+TGG - chr2.1:22296593-22296612 None:intergenic 50.0%
!! GTGCAGCGGTTCTGAAACAA+TGG + chr2.1:22296129-22296148 MS.gene062598:CDS 50.0%
AAGAAAGCTGGGGTTGGAGC+TGG + chr2.1:22296363-22296382 MS.gene062598:CDS 55.0%
ACTTGAACCCGAACCTCCCA+AGG - chr2.1:22296413-22296432 None:intergenic 55.0%
AGGGCTATGGTTCCCATTGG+AGG - chr2.1:22294491-22294510 None:intergenic 55.0%
CACATGGCCAGAGACCAAAC+AGG + chr2.1:22295849-22295868 MS.gene062598:CDS 55.0%
CTGTTTGGTCTCTGGCCATG+TGG - chr2.1:22295851-22295870 None:intergenic 55.0%
CTTGAACCCGAACCTCCCAA+GGG - chr2.1:22296412-22296431 None:intergenic 55.0%
GCCCCCATACCTATGTATGC+AGG + chr2.1:22295767-22295786 MS.gene062598:intron 55.0%
GGGCTATGGTTCCCATTGGA+GGG - chr2.1:22294490-22294509 None:intergenic 55.0%
GTTGGAGCTGGATGGAACGT+TGG + chr2.1:22296375-22296394 MS.gene062598:CDS 55.0%
TGGAGAGGACAGTTCCTTCC+AGG + chr2.1:22294551-22294570 MS.gene062598:CDS 55.0%
AACCGCTGCACCATTCCACC+TGG - chr2.1:22296120-22296139 None:intergenic 60.0%
AAGCTGGGGTTGGAGCTGGA+TGG + chr2.1:22296367-22296386 MS.gene062598:CDS 60.0%
ACCGCTGCACCATTCCACCT+GGG - chr2.1:22296119-22296138 None:intergenic 60.0%
TCCCAGGTGGAATGGTGCAG+CGG + chr2.1:22296115-22296134 MS.gene062598:intron 60.0%
! TTGGGTTGCAGCGCGCCCTT+GGG + chr2.1:22296394-22296413 MS.gene062598:CDS 65.0%
AGCGCGCCCTTGGGAGGTTC+GGG + chr2.1:22296403-22296422 MS.gene062598:CDS 70.0%
CAGCGCGCCCTTGGGAGGTT+CGG + chr2.1:22296402-22296421 MS.gene062598:CDS 70.0%
! GTTGGGTTGCAGCGCGCCCT+TGG + chr2.1:22296393-22296412 MS.gene062598:CDS 70.0%
GGTTGCAGCGCGCCCTTGGG+AGG + chr2.1:22296397-22296416 MS.gene062598:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 22294412 22296655 22294412 ID=MS.gene062598
chr2.1 mRNA 22294412 22296655 22294412 ID=MS.gene062598.t1;Parent=MS.gene062598
chr2.1 exon 22294412 22294627 22294412 ID=MS.gene062598.t1.exon1;Parent=MS.gene062598.t1
chr2.1 CDS 22294412 22294627 22294412 ID=cds.MS.gene062598.t1;Parent=MS.gene062598.t1
chr2.1 exon 22295789 22296016 22295789 ID=MS.gene062598.t1.exon2;Parent=MS.gene062598.t1
chr2.1 CDS 22295789 22296016 22295789 ID=cds.MS.gene062598.t1;Parent=MS.gene062598.t1
chr2.1 exon 22296121 22296234 22296121 ID=MS.gene062598.t1.exon3;Parent=MS.gene062598.t1
chr2.1 CDS 22296121 22296234 22296121 ID=cds.MS.gene062598.t1;Parent=MS.gene062598.t1
chr2.1 exon 22296311 22296655 22296311 ID=MS.gene062598.t1.exon4;Parent=MS.gene062598.t1
chr2.1 CDS 22296311 22296655 22296311 ID=cds.MS.gene062598.t1;Parent=MS.gene062598.t1
Gene Sequence

>MS.gene062598

ATGAACCTTGCTTTGGCACATCCAGTGTTGTTTCTTGTTCTCTTAGCACTCTTTGAACAGGTGCAATCTACTGAACCCTCCAATGGGAACCATAGCCCTCATGAAGAATCAAGTAACACTCCCAATGAAGGTTTGATGATGGAGAGGACAGTTCCTTCCAGGTTGATTCACAATATTGCTGCTACTCGGATTCAAAATGCATTTCGTTCATTTATGGTACAATATCTTTGTGATGCTAGACTCTTTTTATTCCATTTTTACTACAATTTTCACAGTATTTGTGCTTGTAGCTTAGAACAAAATGTCAAAATTCATTATGCCCCTTATGCATTTCGCGATTTTTAGGTTTTTAACCATGCAATCATGCAGTCAATGATCTGAACCGTAAGATTAAAAAGCTCATCTCCTAACTTTGGTTTTCTGAACTAATATACAAAAATAAAAAATGGTTTGTGTAAACTTGATCCAATGGTCCAGATCGTATGATTGCATCAAATCCATGATTCCTTAACTACATAGGGAATCTAGGTCATGCACTTAGACTTTTGATTCTTATAATCAAACCTATGCTTAACCCTTATGAAAATACTAAGTTTGCTTTACACTCACCTTCGTCTACTAAAGCAAAAATTCTATTTCCTTTAAGTGGTACCTTCTAACTTTCCTTGCAATCATAGACATGGCTGCAACTGTCAACAATTCATTATTCTTTTTGTCAACTTAACAAAGTGACATGAGGTTATATTTTGATTCGTTAAAAGAAAATAAAGTTCTATACTATCAAAGGAAACATTATATTTTTATTTTTTTTACAATGAATGAAATACTTTGATATGATGTCTTTATTTGCAAAATCTAAAAATATAATAACTATCGACATCCTTCTTTAGTGATAGTCTAGTTTTTGCATTAAATCAAATTTAAATGGAATAAATGACACTGAATATTTTGTATTTCCTCAAGGTACCATTTACTTTGATAATGACTTTAGAACATGGACCACTAGTGTCTTCACTTTTTTTATTACTACTGGAAAGAATTAAACTTAAAGCAATTATGTTCAGGCACAGCTCTCTGATTTTGGAAGGGGAATTAAGTCATGGGTTATGATGATATTCTCTGTTATGCAGTTATCACCCTCTTTTATAACTGTTTGAAAGCAATTATTTCCCTCATCTGTTTTTCTATACTTACCTTCTTAACAACAAGTTAATTAATTTTTTAGTTTTAAATATCCCATAATATGGCAGATAATTTTATACATGCCCCTATCTTTAGAAATGTCGATTTGAAGCTTTTCTACAAAATTTAGCAATTTTCACATAAGCTTAATGACATGATGAAACTTACTACTAGCCCCCATACCTATGTATGCAGGCAAGAAGAACATTTCAACATCTAAGGGGAGCAGAGAACTTTGAAGCATTAATTCAAGACCACATGGCCAGAGACCAAACAGGAACAACACTTAACTACATACATTCATGGAGCAGAATACAAGATCAAATTAGAGCTCGTAGAATGTGTATGATAACAGCAGCCAGGATTAAGCAAAAGAGATTGGAAAGTCAGTTAAAAATTGAGGCTAAGATTAATGAGCTCGAGGTAGTGTTGCCATAATCTGGCTGTGATAGTTAGCCTTTTAAAGTGTTATCTCTGTTATATTGGTCATTTTCAATAAAGTGTGACATTTTGTAAACGTATCCCAGGTGGAATGGTGCAGCGGTTCTGAAACAATGGAAGAGATACTATCAAGGATACATCAGCGAGAAGAAGCAGCAATCAAACGAGAGCGAGCCATGGCATATGCTTTCTCTCATCAGGTGCATAACTTGTTCCACTTGATTTATCCTTTCTTAAAATCAAAATTTGATCACTAATGTCAAGGTAATATTGCAGTGGAGGCCAAACTGTAACCAGTATTTTGGTCAGGCTTCATATAGCCTTGGTAAAGAAAGCTGGGGTTGGAGCTGGATGGAACGTTGGGTTGCAGCGCGCCCTTGGGAGGTTCGGGTTCAAGTTCAGTCCCCCAAAACAAAGAAACTCAACGGCCAGCAGCAGAAGACCAAATTAGATAAGATGAACCACAATGAAACAAAATCACCATTAAAATCACCATTGACTAAAGCTGCCATGTCAAATGGGAAGGAGAGTGAAACAAAATCGCCATTAAAATCACCATTGGCTAAAGCTTCCGTGTCAAATGCGAAGGAGACTGAGAAAGGAAAGAAAAACAAAACATGA
Protein sequence

>MS.gene062598.t1

MNLALAHPVLFLVLLALFEQVQSTEPSNGNHSPHEESSNTPNEGLMMERTVPSRLIHNIAATRIQNAFRSFMARRTFQHLRGAENFEALIQDHMARDQTGTTLNYIHSWSRIQDQIRARRMCMITAARIKQKRLESQLKIEAKINELEVEWCSGSETMEEILSRIHQREEAAIKRERAMAYAFSHQWRPNCNQYFGQASYSLGKESWGWSWMERWVAARPWEVRVQVQSPKTKKLNGQQQKTKLDKMNHNETKSPLKSPLTKAAMSNGKESETKSPLKSPLAKASVSNAKETEKGKKNKT