AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063029


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063029.t1 MTR_4g073650 99.103 223 2 0 1 223 1 223 5.60e-163 449
MS.gene063029.t1 MTR_3g463900 60.541 185 72 1 31 215 19 202 2.23e-79 236
MS.gene063029.t1 MTR_3g070500 58.791 182 73 2 34 214 51 231 4.95e-73 221
MS.gene063029.t1 MTR_7g116340 55.357 168 74 1 47 214 5 171 3.06e-62 192
MS.gene063029.t1 MTR_1g085560 53.977 176 73 2 41 215 80 248 1.84e-60 190
MS.gene063029.t1 MTR_4g075290 53.216 171 79 1 44 214 2 171 2.89e-60 187
MS.gene063029.t1 MTR_4g086760 56.000 175 76 1 47 220 5 179 7.99e-60 191
MS.gene063029.t1 MTR_8g079690 57.396 169 71 1 47 214 5 173 1.03e-59 191
MS.gene063029.t1 MTR_4g086760 56.000 175 76 1 47 220 5 179 1.25e-59 191
MS.gene063029.t1 MTR_3g117750 54.762 168 75 1 47 214 13 179 1.26e-59 186
MS.gene063029.t1 MTR_4g086760 56.000 175 76 1 47 220 5 179 1.31e-59 191
MS.gene063029.t1 MTR_1g117010 49.485 194 88 2 25 215 56 242 2.09e-59 187
MS.gene063029.t1 MTR_1g117010 49.485 194 88 2 25 215 56 242 2.09e-59 187
MS.gene063029.t1 MTR_7g110980 48.128 187 90 1 29 215 79 258 1.24e-58 186
MS.gene063029.t1 MTR_7g095750 55.814 172 74 2 48 218 9 179 1.06e-56 190
MS.gene063029.t1 MTR_3g070500 58.696 138 56 1 34 170 51 188 3.38e-55 174
MS.gene063029.t1 MTR_8g040180 47.619 168 85 2 48 214 20 185 4.80e-48 156
MS.gene063029.t1 MTR_3g070500 55.455 110 48 1 34 142 51 160 1.64e-39 134
MS.gene063029.t1 MTR_3g070500 53.913 115 52 1 34 147 51 165 2.02e-39 134
MS.gene063029.t1 MTR_3g107660 46.108 167 88 2 48 213 12 177 8.70e-39 142
MS.gene063029.t1 MTR_1g011980 47.305 167 85 3 48 213 9 173 3.35e-38 140
MS.gene063029.t1 MTR_2g085075 42.500 160 79 4 59 217 470 617 1.89e-31 121
MS.gene063029.t1 MTR_8g036015 44.853 136 63 4 58 192 8 132 3.72e-27 102
MS.gene063029.t1 MTR_7g105220 40.458 131 66 3 59 188 18 137 4.70e-27 102
MS.gene063029.t1 MTR_5g015500 42.000 150 75 4 60 208 314 452 3.11e-25 103
MS.gene063029.t1 MTR_5g015500 42.000 150 75 4 60 208 354 492 4.12e-25 103
MS.gene063029.t1 MTR_2g023120 45.522 134 58 5 60 191 22 142 5.73e-25 102
MS.gene063029.t1 MTR_3g085705 41.525 118 57 3 85 202 20 125 7.44e-21 84.7
MS.gene063029.t1 MTR_6g084140 34.591 159 84 5 59 208 26 173 1.13e-18 84.3
MS.gene063029.t1 MTR_6g084140 34.591 159 84 5 59 208 9 156 1.14e-18 84.3
MS.gene063029.t1 MTR_8g442420 33.962 159 85 5 59 208 9 156 1.51e-17 81.3
MS.gene063029.t1 MTR_2g461260 27.094 203 103 7 41 206 53 247 6.06e-13 67.0
MS.gene063029.t1 MTR_1g035360 29.108 213 110 7 18 210 32 223 5.36e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063029.t1 AT4G34960 78.475 223 47 1 1 222 1 223 5.13e-124 350
MS.gene063029.t1 AT4G34960 75.439 171 41 1 1 170 1 171 1.69e-87 256
MS.gene063029.t1 AT2G29960 59.799 199 76 2 17 215 6 200 2.98e-81 241
MS.gene063029.t1 AT2G29960 59.799 199 76 2 17 215 6 200 2.98e-81 241
MS.gene063029.t1 AT5G58710 60.440 182 71 1 34 215 23 203 8.33e-78 233
MS.gene063029.t1 AT2G29960 56.784 199 72 3 17 215 6 190 1.65e-74 224
MS.gene063029.t1 AT3G55920 52.074 217 87 3 14 214 11 226 5.18e-71 216
MS.gene063029.t1 AT5G13120 52.821 195 82 2 27 218 71 258 1.92e-66 206
MS.gene063029.t1 AT5G13120 52.821 195 82 2 27 218 67 254 2.11e-66 205
MS.gene063029.t1 AT3G56070 55.952 168 73 1 47 214 5 171 1.09e-63 196
MS.gene063029.t1 AT3G56070 55.952 168 73 1 47 214 5 171 1.09e-63 196
MS.gene063029.t1 AT4G38740 55.952 168 73 1 47 214 5 171 1.30e-63 195
MS.gene063029.t1 AT2G21130 57.738 168 70 1 47 214 6 172 4.26e-63 194
MS.gene063029.t1 AT2G15790 57.895 171 71 1 47 216 5 175 8.01e-61 194
MS.gene063029.t1 AT4G34870 55.357 168 74 1 47 214 5 171 9.85e-61 188
MS.gene063029.t1 AT3G62030 50.829 181 82 1 35 215 83 256 1.70e-60 191
MS.gene063029.t1 AT3G62030 50.829 181 82 1 35 215 84 257 1.75e-60 191
MS.gene063029.t1 AT3G62030 50.829 181 82 1 35 215 137 310 6.62e-60 191
MS.gene063029.t1 AT2G16600 52.976 168 78 1 47 214 6 172 2.94e-58 182
MS.gene063029.t1 AT3G63400 55.357 168 73 2 48 214 9 175 1.24e-54 179
MS.gene063029.t1 AT3G63400 55.357 168 73 2 48 214 9 175 5.60e-53 179
MS.gene063029.t1 AT3G63400 55.357 168 73 2 48 214 9 175 5.60e-53 179
MS.gene063029.t1 AT3G63400 55.357 168 73 2 48 214 9 175 5.60e-53 179
MS.gene063029.t1 AT2G38730 45.833 168 88 2 48 214 34 199 7.93e-45 149
MS.gene063029.t1 AT2G16600 45.833 168 68 2 47 214 6 150 2.16e-43 143
MS.gene063029.t1 AT4G32420 46.707 167 87 2 48 213 9 174 9.72e-38 139
MS.gene063029.t1 AT4G32420 46.707 167 87 2 48 213 9 174 9.72e-38 139
MS.gene063029.t1 AT4G32420 46.707 167 87 2 48 213 9 174 9.72e-38 139
MS.gene063029.t1 AT4G32420 46.707 167 87 2 48 213 9 174 9.72e-38 139
MS.gene063029.t1 AT4G32420 47.945 146 75 1 48 192 9 154 1.02e-36 136
MS.gene063029.t1 AT3G22920 43.860 171 85 5 47 214 5 167 3.64e-35 125
MS.gene063029.t1 AT3G44600 42.500 160 79 4 59 217 484 631 7.68e-31 119
MS.gene063029.t1 AT1G01940 45.588 136 62 4 58 192 8 132 5.67e-28 104
MS.gene063029.t1 AT2G36130 41.221 131 65 3 59 188 18 137 7.26e-28 103
MS.gene063029.t1 AT4G33060 45.600 125 55 4 60 182 22 135 2.67e-27 108
MS.gene063029.t1 AT5G67530 42.484 153 76 4 60 211 353 494 1.83e-26 107
MS.gene063029.t1 AT1G53720 33.962 159 85 5 59 208 9 156 1.06e-17 80.9
MS.gene063029.t1 AT1G53720 34.591 159 84 6 59 208 9 156 3.37e-17 80.1
MS.gene063029.t1 AT5G35100 31.282 195 74 8 44 192 50 230 2.25e-12 65.1
MS.gene063029.t1 AT5G35100 31.282 195 74 8 44 192 50 230 2.25e-12 65.1

Find 49 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTACGGTGGCACCTTTC+CGG 0.188799 4.2:+34952595 MS.gene063029:CDS
CCTTTCCGGACGAGAATTTC+AGG 0.192361 4.2:+34952609 MS.gene063029:CDS
CGTTGTCTCTATGGCTAATT+CGG 0.268263 4.2:+34952792 MS.gene063029:CDS
CCATTTCATCGGATAGTATC+TGG 0.290312 4.2:+34952518 MS.gene063029:CDS
CGCATTCTCTGCTTCTAAAC+TGG 0.301025 4.2:+34950342 MS.gene063029:CDS
AAAACTCTATGTGTAATTTC+AGG 0.328445 4.2:-34951764 None:intergenic
CTTCCTCGGTTTCCCACTAT+AGG 0.329905 4.2:-34953110 None:intergenic
GGTTGCAGGCGTTGTCTCTA+TGG 0.339111 4.2:+34952783 MS.gene063029:intron
GATATTGATAAACAGCGTTT+AGG 0.342954 4.2:+34951797 MS.gene063029:CDS
AGGATCGTGATTGGATTATA+TGG 0.372648 4.2:+34952027 MS.gene063029:CDS
TCCTCGTCCCACTTGCTCTT+CGG 0.389846 4.2:-34953163 None:intergenic
AACTGTGAACCATTGGAATC+AGG 0.397478 4.2:-34952817 None:intergenic
AAAGCATCTGAATCTATTTA+CGG 0.399116 4.2:+34952581 MS.gene063029:CDS
CCAGATACTATCCGATGAAA+TGG 0.402366 4.2:-34952518 None:intergenic
TACAAATTTGATAGGTTGGA+TGG 0.436162 4.2:+34953016 MS.gene063029:intron
GGTGTAAAGCTTCATTATAA+AGG 0.446051 4.2:+34952491 MS.gene063029:CDS
TCTGCAGGTAGGATCGTGAT+TGG 0.453737 4.2:+34952018 MS.gene063029:intron
AGAGAACAAGGAGGAGAATG+AGG 0.453892 4.2:-34950303 None:intergenic
CCATAATGTGTAGGGGAGAA+AGG 0.471502 4.2:+34952455 MS.gene063029:intron
GTTGTCTCTATGGCTAATTC+GGG 0.473379 4.2:+34952793 MS.gene063029:CDS
AAGGTAGTGATTGCGGACTC+TGG 0.481336 4.2:+34953133 MS.gene063029:CDS
AGGATTAAACATTCTCATGC+TGG 0.482834 4.2:+34952629 MS.gene063029:CDS
TTAATCCTGAAATTCTCGTC+CGG 0.506818 4.2:-34952614 None:intergenic
GCAATCACTACCTTCTTCCT+CGG 0.508012 4.2:-34953124 None:intergenic
GATACCGTATTTGCAATTGA+AGG 0.526063 4.2:+34953076 MS.gene063029:CDS
TGGCAAGGTTGTTCAAGGCA+TGG 0.547061 4.2:+34953054 MS.gene063029:CDS
ATACCGTATTTGCAATTGAA+GGG 0.553217 4.2:+34953077 MS.gene063029:CDS
GGAGATATTGTTCATTGTGA+TGG 0.556419 4.2:+34952557 MS.gene063029:CDS
TAATGAAAATTGAGAGAACA+AGG 0.563578 4.2:-34950315 None:intergenic
GAGAGATACCGAAGAGCAAG+TGG 0.564077 4.2:+34953155 MS.gene063029:CDS
ATAAAGGAACACCATTTCAT+CGG 0.570046 4.2:+34952507 MS.gene063029:CDS
ACCGAAGAGCAAGTGGGACG+AGG 0.574878 4.2:+34953162 MS.gene063029:CDS
TACCGTATTTGCAATTGAAG+GGG 0.577885 4.2:+34953078 MS.gene063029:CDS
TAGTGGGAAACCGAGGAAGA+AGG 0.584123 4.2:+34953114 MS.gene063029:CDS
CCTGAAATTCTCGTCCGGAA+AGG 0.592748 4.2:-34952609 None:intergenic
GAGAAAGGCGAGAGTGCAAG+CGG 0.601330 4.2:+34952470 MS.gene063029:CDS
GGGGAGCTGGAACCTATAGT+GGG 0.603118 4.2:+34953098 MS.gene063029:CDS
AATTCGGGACCTGATTCCAA+TGG 0.603199 4.2:+34952808 MS.gene063029:CDS
GGCCGATGAGAAAACAGAAG+AGG 0.613799 4.2:+34951739 MS.gene063029:intron
TTACCACAGTGAAGGCCAGT+TGG 0.614315 4.2:+34952845 MS.gene063029:CDS
GAGGAAGAAGGTAGTGATTG+CGG 0.640776 4.2:+34953126 MS.gene063029:CDS
AGGAGGAGAATGAGGAATCG+AGG 0.641912 4.2:-34950295 None:intergenic
ACCGTATTTGCAATTGAAGG+GGG 0.647013 4.2:+34953079 MS.gene063029:CDS
TGAAAATTGAGAGAACAAGG+AGG 0.658859 4.2:-34950312 None:intergenic
GAACCTATAGTGGGAAACCG+AGG 0.686763 4.2:+34953107 MS.gene063029:CDS
AGAGATACCGAAGAGCAAGT+GGG 0.699903 4.2:+34953156 MS.gene063029:CDS
GATTGGATTATATGGCCAAG+TGG 0.703755 4.2:+34952035 MS.gene063029:CDS
TTACCAACTGGCCTTCACTG+TGG 0.710194 4.2:-34952848 None:intergenic
GCATCTGAATCTATTTACGG+TGG 0.715780 4.2:+34952584 MS.gene063029:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCATTACAAATTTGAT+AGG + chr4.2:34953008-34953027 MS.gene063029:intron 15.0%
!! TATTAATAGTAAAAAGGAAA+AGG - chr4.2:34951978-34951997 None:intergenic 15.0%
!!! AGTTTTTTATATTCTCATTA+AGG + chr4.2:34950706-34950725 MS.gene063029:intron 15.0%
!!! GATATATTGATAATAGTTTA+AGG + chr4.2:34951408-34951427 MS.gene063029:intron 15.0%
!!! TTTAAGCATTTTGTTTTATT+CGG + chr4.2:34952672-34952691 MS.gene063029:intron 15.0%
!!! TTTCCTTTTTACTATTAATA+TGG + chr4.2:34951978-34951997 MS.gene063029:intron 15.0%
!! ACTGCAATATATATAGAAAA+GGG - chr4.2:34950381-34950400 None:intergenic 20.0%
!! ATATACGTAGTAAGTTAAAT+TGG - chr4.2:34951885-34951904 None:intergenic 20.0%
!! CTCAAAAATGACAAAAAAAA+AGG - chr4.2:34952724-34952743 None:intergenic 20.0%
!! TAAGAAAATCAATGTTTGAT+AGG + chr4.2:34952158-34952177 MS.gene063029:intron 20.0%
!! TAATGAATTCAAACTTACAA+CGG + chr4.2:34950764-34950783 MS.gene063029:intron 20.0%
!!! ATAGTGTATTTCATTTTGAA+AGG - chr4.2:34952272-34952291 None:intergenic 20.0%
!!! CTTTTTTTTTGTCATTTTTG+AGG + chr4.2:34952722-34952741 MS.gene063029:intron 20.0%
!!! TACGTATATTTGTTAGAAAA+AGG + chr4.2:34951896-34951915 MS.gene063029:intron 20.0%
!!! TATTGTTGTTGATTTAATGA+TGG + chr4.2:34950501-34950520 MS.gene063029:intron 20.0%
!!! TATTTGTTAGAAAAAGGATT+AGG + chr4.2:34951902-34951921 MS.gene063029:intron 20.0%
!!! TTTTATATTCTCATTAAGGT+GGG + chr4.2:34950710-34950729 MS.gene063029:intron 20.0%
!!! TTTTTACTATTAATATGGTG+CGG + chr4.2:34951983-34952002 MS.gene063029:intron 20.0%
!!! TTTTTATATTCTCATTAAGG+TGG + chr4.2:34950709-34950728 MS.gene063029:intron 20.0%
!!! TTTTTGTTTCTTCTATTGTA+AGG - chr4.2:34952124-34952143 None:intergenic 20.0%
! AAAACTCTATGTGTAATTTC+AGG - chr4.2:34951767-34951786 None:intergenic 25.0%
! AAAGTGATGAAGTAAGATAA+AGG + chr4.2:34951270-34951289 MS.gene063029:intron 25.0%
! AATCACAGTTTCAACATTTA+AGG - chr4.2:34950931-34950950 None:intergenic 25.0%
! ATATAAATTTATCCCCCATT+TGG + chr4.2:34952409-34952428 MS.gene063029:intron 25.0%
! ATATATAGAAAAGGGTCATA+AGG - chr4.2:34950373-34950392 None:intergenic 25.0%
! GACTGCAATATATATAGAAA+AGG - chr4.2:34950382-34950401 None:intergenic 25.0%
! GCACCATATTAATAGTAAAA+AGG - chr4.2:34951984-34952003 None:intergenic 25.0%
! TAATGAAAATTGAGAGAACA+AGG - chr4.2:34950318-34950337 None:intergenic 25.0%
! TATATAGAAAAGGGTCATAA+GGG - chr4.2:34950372-34950391 None:intergenic 25.0%
! TATATATATTGCAGTCATTG+TGG + chr4.2:34950386-34950405 MS.gene063029:intron 25.0%
! TCATTACAAATTTGATAGGT+TGG + chr4.2:34953012-34953031 MS.gene063029:intron 25.0%
!! AAACTGCAATTTTTATTGAC+TGG + chr4.2:34952307-34952326 MS.gene063029:intron 25.0%
!! AAAGCATCTGAATCTATTTA+CGG + chr4.2:34952581-34952600 MS.gene063029:CDS 25.0%
!! AATTACACATAGAGTTTTCT+TGG + chr4.2:34951769-34951788 MS.gene063029:CDS 25.0%
!! CTTATTAAAATTTGCTCTCT+CGG + chr4.2:34952209-34952228 MS.gene063029:intron 25.0%
AAAGAAAAACTGTGAACCAT+TGG - chr4.2:34952827-34952846 None:intergenic 30.0%
AATACAGAATCTCCCTAATT+TGG + chr4.2:34950987-34951006 MS.gene063029:intron 30.0%
AATCACTGTCTTAAATAAGG+TGG + chr4.2:34951137-34951156 MS.gene063029:intron 30.0%
AATCGTTTCCAGCTTATTAT+GGG + chr4.2:34951627-34951646 MS.gene063029:intron 30.0%
ATAAAGGAACACCATTTCAT+CGG + chr4.2:34952507-34952526 MS.gene063029:CDS 30.0%
ATACAGAATCTCCCTAATTT+GGG + chr4.2:34950988-34951007 MS.gene063029:intron 30.0%
ATACCGTATTTGCAATTGAA+GGG + chr4.2:34953077-34953096 MS.gene063029:CDS 30.0%
ATCACTGTCTTAAATAAGGT+GGG + chr4.2:34951138-34951157 MS.gene063029:intron 30.0%
ATTAGTGTTCCATAATGTGT+AGG + chr4.2:34952446-34952465 MS.gene063029:intron 30.0%
CACAATCACTGTCTTAAATA+AGG + chr4.2:34951134-34951153 MS.gene063029:intron 30.0%
CCTAATTTGAAAGTAGTTGA+AGG + chr4.2:34951377-34951396 MS.gene063029:intron 30.0%
CCTTCAACTACTTTCAAATT+AGG - chr4.2:34951380-34951399 None:intergenic 30.0%
CTTACAGAATCATAATGCAA+GGG - chr4.2:34950571-34950590 None:intergenic 30.0%
GAACACTAATAATTAGTGCA+TGG - chr4.2:34952436-34952455 None:intergenic 30.0%
GAACTAAGAAAATGTATTGG+AGG + chr4.2:34951012-34951031 MS.gene063029:intron 30.0%
GATAACATGAATAGTGATGA+TGG - chr4.2:34952988-34953007 None:intergenic 30.0%
GATATTGATAAACAGCGTTT+AGG + chr4.2:34951797-34951816 MS.gene063029:CDS 30.0%
GGTGTAAAGCTTCATTATAA+AGG + chr4.2:34952491-34952510 MS.gene063029:CDS 30.0%
GTAAGTTAAATTGGTACGAA+TGG - chr4.2:34951876-34951895 None:intergenic 30.0%
TAATCGTTTCCAGCTTATTA+TGG + chr4.2:34951626-34951645 MS.gene063029:intron 30.0%
TAGTTTAGGGATCAAATTGA+TGG + chr4.2:34951481-34951500 MS.gene063029:intron 30.0%
TCCATATTAACCTGCATATT+GGG + chr4.2:34951676-34951695 MS.gene063029:intron 30.0%
TTAGTGTTCCATAATGTGTA+GGG + chr4.2:34952447-34952466 MS.gene063029:intron 30.0%
TTCCATATTAACCTGCATAT+TGG + chr4.2:34951675-34951694 MS.gene063029:intron 30.0%
! AGTTTCAACATTTAAGGCAT+GGG - chr4.2:34950925-34950944 None:intergenic 30.0%
! ATTTGCTGCATATTAACCTT+TGG + chr4.2:34951651-34951670 MS.gene063029:intron 30.0%
! CAATGTCAATGTTGTTTAGT+TGG + chr4.2:34950606-34950625 MS.gene063029:intron 30.0%
! TACAAATTTGATAGGTTGGA+TGG + chr4.2:34953016-34953035 MS.gene063029:intron 30.0%
!! AATGATGGATGAATCTGTTA+TGG + chr4.2:34950516-34950535 MS.gene063029:intron 30.0%
!! TGAAACTGTGATTTTGAAAG+AGG + chr4.2:34950938-34950957 MS.gene063029:intron 30.0%
!!! CGTCATTGGTTTTGTATTTT+TGG + chr4.2:34952076-34952095 MS.gene063029:intron 30.0%
!!! TGCGTTTTAAGTTGTTTCAT+TGG + chr4.2:34952747-34952766 MS.gene063029:intron 30.0%
AATTAGTGCATGGACCAAAT+GGG - chr4.2:34952426-34952445 None:intergenic 35.0%
ACCCAATATGCAGGTTAATA+TGG - chr4.2:34951680-34951699 None:intergenic 35.0%
ACGTATTAGATCGTTTGAAG+AGG + chr4.2:34950870-34950889 MS.gene063029:intron 35.0%
AGAAGAGAGAGTAGTAGTTT+AGG + chr4.2:34951467-34951486 MS.gene063029:intron 35.0%
AGCAGCTCAAGTAAATGATA+AGG + chr4.2:34950800-34950819 MS.gene063029:intron 35.0%
AGGATCGTGATTGGATTATA+TGG + chr4.2:34952027-34952046 MS.gene063029:CDS 35.0%
AGGATTAAACATTCTCATGC+TGG + chr4.2:34952629-34952648 MS.gene063029:CDS 35.0%
ATGGATGTAGCAATAGCAAT+TGG - chr4.2:34951857-34951876 None:intergenic 35.0%
CAGGTTAATATGGAAACCAA+AGG - chr4.2:34951670-34951689 None:intergenic 35.0%
CCTTACAGAATCATAATGCA+AGG - chr4.2:34950572-34950591 None:intergenic 35.0%
CCTTGCATTATGATTCTGTA+AGG + chr4.2:34950569-34950588 MS.gene063029:intron 35.0%
CGTATTAGATCGTTTGAAGA+GGG + chr4.2:34950871-34950890 MS.gene063029:intron 35.0%
CTAAGAAAATGTATTGGAGG+AGG + chr4.2:34951015-34951034 MS.gene063029:intron 35.0%
CTGACTCATTCTGTAATCAA+AGG - chr4.2:34951565-34951584 None:intergenic 35.0%
GAAGAGAGAGTAGTAGTTTA+GGG + chr4.2:34951468-34951487 MS.gene063029:intron 35.0%
GATACCGTATTTGCAATTGA+AGG + chr4.2:34953076-34953095 MS.gene063029:CDS 35.0%
GGAGATATTGTTCATTGTGA+TGG + chr4.2:34952557-34952576 MS.gene063029:CDS 35.0%
GGCGAACTAAGAAAATGTAT+TGG + chr4.2:34951009-34951028 MS.gene063029:intron 35.0%
GTAAAAACATTGTAGTCCCT+GGG + chr4.2:34951511-34951530 MS.gene063029:intron 35.0%
TAATTAGTGCATGGACCAAA+TGG - chr4.2:34952427-34952446 None:intergenic 35.0%
TACCGTATTTGCAATTGAAG+GGG + chr4.2:34953078-34953097 MS.gene063029:CDS 35.0%
TAGTGTTCCATAATGTGTAG+GGG + chr4.2:34952448-34952467 MS.gene063029:intron 35.0%
TGAAAATTGAGAGAACAAGG+AGG - chr4.2:34950315-34950334 None:intergenic 35.0%
TGACAAAGTAACTTACCAAC+TGG - chr4.2:34952863-34952882 None:intergenic 35.0%
TGTAAAAACATTGTAGTCCC+TGG + chr4.2:34951510-34951529 MS.gene063029:intron 35.0%
TTAAGACAGTGATTGTGTAG+AGG - chr4.2:34951131-34951150 None:intergenic 35.0%
TTAATCCTGAAATTCTCGTC+CGG - chr4.2:34952617-34952636 None:intergenic 35.0%
TTATCATTTACTTGAGCTGC+TGG - chr4.2:34950801-34950820 None:intergenic 35.0%
TTCTTAGTTCGCCCAAATTA+GGG - chr4.2:34951002-34951021 None:intergenic 35.0%
TTTCTTAGTTCGCCCAAATT+AGG - chr4.2:34951003-34951022 None:intergenic 35.0%
! AATGTATTGGAGGAGGATTT+TGG + chr4.2:34951022-34951041 MS.gene063029:intron 35.0%
! CAGTTTCAACATTTAAGGCA+TGG - chr4.2:34950926-34950945 None:intergenic 35.0%
! GTTTTTCTTTACCACAGTGA+AGG + chr4.2:34952837-34952856 MS.gene063029:CDS 35.0%
! TTCATTGGAAACTTGCTCTA+TGG + chr4.2:34952762-34952781 MS.gene063029:intron 35.0%
!! AACTGTGATTTTGAAAGAGG+AGG + chr4.2:34950941-34950960 MS.gene063029:intron 35.0%
!! AGAGGAGGTATCTATACTTA+AGG + chr4.2:34950956-34950975 MS.gene063029:intron 35.0%
!! GAGGAGGTATCTATACTTAA+GGG + chr4.2:34950957-34950976 MS.gene063029:intron 35.0%
!!! AATTTTAGAGCTTTGTGCAC+AGG + chr4.2:34952349-34952368 MS.gene063029:CDS 35.0%
!!! AGTATCTGGTTTTGTGATTC+AGG + chr4.2:34952532-34952551 MS.gene063029:CDS 35.0%
!!! GTATCTGGTTTTGTGATTCA+GGG + chr4.2:34952533-34952552 MS.gene063029:CDS 35.0%
!!! TTCGCTTTTTCTGATGATGT+AGG + chr4.2:34951718-34951737 MS.gene063029:intron 35.0%
!!! TTTTCTTGGAGGCATTTTCA+GGG - chr4.2:34950835-34950854 None:intergenic 35.0%
AAAAACTGTGGGTACGTCAT+TGG + chr4.2:34952062-34952081 MS.gene063029:intron 40.0%
AAACAGAGCCTTCAGTTTCA+AGG + chr4.2:34951194-34951213 MS.gene063029:intron 40.0%
AACTGTGAACCATTGGAATC+AGG - chr4.2:34952820-34952839 None:intergenic 40.0%
ACCGTATTTGCAATTGAAGG+GGG + chr4.2:34953079-34953098 MS.gene063029:CDS 40.0%
ACGATCTAATACGTGCAATG+TGG - chr4.2:34950864-34950883 None:intergenic 40.0%
AGCAAATGCCCATAATAAGC+TGG - chr4.2:34951638-34951657 None:intergenic 40.0%
AGTCATTGTGGATCTGATCT+GGG + chr4.2:34950398-34950417 MS.gene063029:intron 40.0%
AGTGCGAACAGTGAATATGA+TGG - chr4.2:34951606-34951625 None:intergenic 40.0%
ATGCAATAACTTCTGCAGGT+AGG + chr4.2:34952007-34952026 MS.gene063029:intron 40.0%
ATTAGTGCATGGACCAAATG+GGG - chr4.2:34952425-34952444 None:intergenic 40.0%
ATTGACATTGCCAGTTGAGT+TGG - chr4.2:34950596-34950615 None:intergenic 40.0%
CAACCTTGCCAAAAACAACA+TGG - chr4.2:34953045-34953064 None:intergenic 40.0%
CAAGTGGTACCAAAAACTGT+GGG + chr4.2:34952051-34952070 MS.gene063029:CDS 40.0%
CCAGATACTATCCGATGAAA+TGG - chr4.2:34952521-34952540 None:intergenic 40.0%
CCATTTCATCGGATAGTATC+TGG + chr4.2:34952518-34952537 MS.gene063029:CDS 40.0%
CGTTGTCTCTATGGCTAATT+CGG + chr4.2:34952792-34952811 MS.gene063029:CDS 40.0%
GATGTGGCATCAAATGAAAG+AGG + chr4.2:34951325-34951344 MS.gene063029:intron 40.0%
GATTGGATTATATGGCCAAG+TGG + chr4.2:34952035-34952054 MS.gene063029:CDS 40.0%
GCATCTGAATCTATTTACGG+TGG + chr4.2:34952584-34952603 MS.gene063029:CDS 40.0%
GCTCAAGTAAATGATAAGGC+AGG + chr4.2:34950804-34950823 MS.gene063029:intron 40.0%
GTGCGAACAGTGAATATGAT+GGG - chr4.2:34951605-34951624 None:intergenic 40.0%
GTTGTCTCTATGGCTAATTC+GGG + chr4.2:34952793-34952812 MS.gene063029:CDS 40.0%
TCCCCCTTCAATTGCAAATA+CGG - chr4.2:34953083-34953102 None:intergenic 40.0%
TGAAACTGAAGGCTCTGTTT+GGG - chr4.2:34951194-34951213 None:intergenic 40.0%
TTGAAACTGAAGGCTCTGTT+TGG - chr4.2:34951195-34951214 None:intergenic 40.0%
TTTGACTGAACCCAATATGC+AGG - chr4.2:34951689-34951708 None:intergenic 40.0%
! AATGACGTACCCACAGTTTT+TGG - chr4.2:34952063-34952082 None:intergenic 40.0%
! CAATGTGGCAATGCTTTTCT+TGG - chr4.2:34950849-34950868 None:intergenic 40.0%
! CTCCTCTTCTGTTTTCTCAT+CGG - chr4.2:34951744-34951763 None:intergenic 40.0%
! TGATTGATAGCCTGTCATGT+GGG + chr4.2:34952933-34952952 MS.gene063029:intron 40.0%
! TGGTGTGTGACAATTTGCTT+GGG + chr4.2:34952649-34952668 MS.gene063029:intron 40.0%
! TTGATTGATAGCCTGTCATG+TGG + chr4.2:34952932-34952951 MS.gene063029:intron 40.0%
!! TGAAGTAAGATAAAGGTGCC+TGG + chr4.2:34951277-34951296 MS.gene063029:intron 40.0%
!!! AGACCATGTTGTTTTTGGCA+AGG + chr4.2:34953039-34953058 MS.gene063029:CDS 40.0%
!!! CTTTTCTTGGAGGCATTTTC+AGG - chr4.2:34950836-34950855 None:intergenic 40.0%
!!! GATGGAGACCATGTTGTTTT+TGG + chr4.2:34953034-34953053 MS.gene063029:CDS 40.0%
!!! GTTTTTGGCAAGGTTGTTCA+AGG + chr4.2:34953049-34953068 MS.gene063029:CDS 40.0%
AATTCGGGACCTGATTCCAA+TGG + chr4.2:34952808-34952827 MS.gene063029:CDS 45.0%
ACTGTTTGGCTAGAAGGATG+TGG + chr4.2:34951309-34951328 MS.gene063029:intron 45.0%
AGAGAACAAGGAGGAGAATG+AGG - chr4.2:34950306-34950325 None:intergenic 45.0%
AGAGATACCGAAGAGCAAGT+GGG + chr4.2:34953156-34953175 MS.gene063029:CDS 45.0%
CAGTCATTGTGGATCTGATC+TGG + chr4.2:34950397-34950416 MS.gene063029:intron 45.0%
CCAAACAGTCTCTTCTAACC+AGG - chr4.2:34951298-34951317 None:intergenic 45.0%
CCAAGTGGTACCAAAAACTG+TGG + chr4.2:34952050-34952069 MS.gene063029:CDS 45.0%
CCATAATGTGTAGGGGAGAA+AGG + chr4.2:34952455-34952474 MS.gene063029:intron 45.0%
CCTGGTTAGAAGAGACTGTT+TGG + chr4.2:34951295-34951314 MS.gene063029:intron 45.0%
CCTTTCTCCCCTACACATTA+TGG - chr4.2:34952458-34952477 None:intergenic 45.0%
CGCATTCTCTGCTTCTAAAC+TGG + chr4.2:34950342-34950361 MS.gene063029:CDS 45.0%
CGGTATGCAATAACTTCTGC+AGG + chr4.2:34952003-34952022 MS.gene063029:intron 45.0%
CTTGCTTGCCTTGAAACTGA+AGG - chr4.2:34951205-34951224 None:intergenic 45.0%
GAAGAGACTGTTTGGCTAGA+AGG + chr4.2:34951303-34951322 MS.gene063029:intron 45.0%
GAGGAAGAAGGTAGTGATTG+CGG + chr4.2:34953126-34953145 MS.gene063029:CDS 45.0%
GCAATCACTACCTTCTTCCT+CGG - chr4.2:34953127-34953146 None:intergenic 45.0%
TATTTACGGTGGCACCTTTC+CGG + chr4.2:34952595-34952614 MS.gene063029:CDS 45.0%
TCTGTAAGGTCCAACTCAAC+TGG + chr4.2:34950583-34950602 MS.gene063029:intron 45.0%
TTAGTGCATGGACCAAATGG+GGG - chr4.2:34952424-34952443 None:intergenic 45.0%
! CTGGTGTGTGACAATTTGCT+TGG + chr4.2:34952648-34952667 MS.gene063029:intron 45.0%
! GAAACTTGCTCTATGGTTGC+AGG + chr4.2:34952769-34952788 MS.gene063029:intron 45.0%
! GTAGTGTTTGTCACTTCGTC+TGG + chr4.2:34950671-34950690 MS.gene063029:intron 45.0%
! TGTGGCAATGCTTTTCTTGG+AGG - chr4.2:34950846-34950865 None:intergenic 45.0%
!!! CCACAGTTTTTGGTACCACT+TGG - chr4.2:34952053-34952072 None:intergenic 45.0%
!!! TCTGGTTTTGTGATTCAGGG+TGG + chr4.2:34952536-34952555 MS.gene063029:CDS 45.0%
AACTCACACACACAACTGCG+AGG - chr4.2:34950648-34950667 None:intergenic 50.0%
AACTGAAGGCTCTGTTTGGG+AGG - chr4.2:34951191-34951210 None:intergenic 50.0%
AACTGCGAGGACTCAAGTGA+AGG - chr4.2:34950635-34950654 None:intergenic 50.0%
AAGGTAGTGATTGCGGACTC+TGG + chr4.2:34953133-34953152 MS.gene063029:CDS 50.0%
ACTGAAGGCTCTGTTTGGGA+GGG - chr4.2:34951190-34951209 None:intergenic 50.0%
ACTGCGAGGACTCAAGTGAA+GGG - chr4.2:34950634-34950653 None:intergenic 50.0%
AGGAGGAGAATGAGGAATCG+AGG - chr4.2:34950298-34950317 None:intergenic 50.0%
CCTGAAATTCTCGTCCGGAA+AGG - chr4.2:34952612-34952631 None:intergenic 50.0%
CCTTTCCGGACGAGAATTTC+AGG + chr4.2:34952609-34952628 MS.gene063029:CDS 50.0%
CTTCCTCGGTTTCCCACTAT+AGG - chr4.2:34953113-34953132 None:intergenic 50.0%
GAGAGATACCGAAGAGCAAG+TGG + chr4.2:34953155-34953174 MS.gene063029:CDS 50.0%
GCTGTATCTTCCCACATGAC+AGG - chr4.2:34952946-34952965 None:intergenic 50.0%
GGCCGATGAGAAAACAGAAG+AGG + chr4.2:34951739-34951758 MS.gene063029:intron 50.0%
TAGTGGGAAACCGAGGAAGA+AGG + chr4.2:34953114-34953133 MS.gene063029:CDS 50.0%
TCTGCAGGTAGGATCGTGAT+TGG + chr4.2:34952018-34952037 MS.gene063029:intron 50.0%
TCTGTTTGGGAGGGAAAGAG+AGG - chr4.2:34951181-34951200 None:intergenic 50.0%
TGGCAAGGTTGTTCAAGGCA+TGG + chr4.2:34953054-34953073 MS.gene063029:CDS 50.0%
TTACCACAGTGAAGGCCAGT+TGG + chr4.2:34952845-34952864 MS.gene063029:CDS 50.0%
TTTGCAATTGAAGGGGGAGC+TGG + chr4.2:34953085-34953104 MS.gene063029:CDS 50.0%
! GAACCTATAGTGGGAAACCG+AGG + chr4.2:34953107-34953126 MS.gene063029:CDS 50.0%
! GGTGGGTTCAAGTGTGTGTT+AGG + chr4.2:34950727-34950746 MS.gene063029:intron 50.0%
!! TTACCAACTGGCCTTCACTG+TGG - chr4.2:34952851-34952870 None:intergenic 50.0%
CTGCGAGGACTCAAGTGAAG+GGG - chr4.2:34950633-34950652 None:intergenic 55.0%
CTTGCAGAAATGCTCGCCCA+GGG - chr4.2:34951530-34951549 None:intergenic 55.0%
GGGGAGCTGGAACCTATAGT+GGG + chr4.2:34953098-34953117 MS.gene063029:CDS 55.0%
TCCTCGTCCCACTTGCTCTT+CGG - chr4.2:34953166-34953185 None:intergenic 55.0%
TCTTGCAGAAATGCTCGCCC+AGG - chr4.2:34951531-34951550 None:intergenic 55.0%
! GAGAAAGGCGAGAGTGCAAG+CGG + chr4.2:34952470-34952489 MS.gene063029:CDS 55.0%
! GGTTGCAGGCGTTGTCTCTA+TGG + chr4.2:34952783-34952802 MS.gene063029:intron 55.0%
ACCGAAGAGCAAGTGGGACG+AGG + chr4.2:34953162-34953181 MS.gene063029:CDS 60.0%
GGGGGAGCTGGAACCTATAG+TGG + chr4.2:34953097-34953116 MS.gene063029:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 34950265 34953192 34950265 ID=MS.gene063029
chr4.2 mRNA 34950265 34953192 34950265 ID=MS.gene063029.t1;Parent=MS.gene063029
chr4.2 exon 34950265 34950363 34950265 ID=MS.gene063029.t1.exon1;Parent=MS.gene063029.t1
chr4.2 CDS 34950265 34950363 34950265 ID=cds.MS.gene063029.t1;Parent=MS.gene063029.t1
chr4.2 exon 34951740 34951818 34951740 ID=MS.gene063029.t1.exon2;Parent=MS.gene063029.t1
chr4.2 CDS 34951740 34951818 34951740 ID=cds.MS.gene063029.t1;Parent=MS.gene063029.t1
chr4.2 exon 34952025 34952072 34952025 ID=MS.gene063029.t1.exon3;Parent=MS.gene063029.t1
chr4.2 CDS 34952025 34952072 34952025 ID=cds.MS.gene063029.t1;Parent=MS.gene063029.t1
chr4.2 exon 34952347 34952370 34952347 ID=MS.gene063029.t1.exon4;Parent=MS.gene063029.t1
chr4.2 CDS 34952347 34952370 34952347 ID=cds.MS.gene063029.t1;Parent=MS.gene063029.t1
chr4.2 exon 34952468 34952650 34952468 ID=MS.gene063029.t1.exon5;Parent=MS.gene063029.t1
chr4.2 CDS 34952468 34952650 34952468 ID=cds.MS.gene063029.t1;Parent=MS.gene063029.t1
chr4.2 exon 34952791 34952866 34952791 ID=MS.gene063029.t1.exon6;Parent=MS.gene063029.t1
chr4.2 CDS 34952791 34952866 34952791 ID=cds.MS.gene063029.t1;Parent=MS.gene063029.t1
chr4.2 exon 34953030 34953192 34953030 ID=MS.gene063029.t1.exon7;Parent=MS.gene063029.t1
chr4.2 CDS 34953030 34953192 34953030 ID=cds.MS.gene063029.t1;Parent=MS.gene063029.t1
Gene Sequence

>MS.gene063029

ATGCGTAGAGAGATCGCGTTTCTCGCTCAGCCTCGATTCCTCATTCTCCTCCTTGTTCTCTCAATTTTCATTATTTTCGCATTCTCTGCTTCTAAACTGGTATGCCCTTATGACCCTTTTCTATATATATTGCAGTCATTGTGGATCTGATCTGGGTTATTGATAATATGAATTAAAAATGTGATTTTTTTTTGTTTACTTTGTCTGTAATTGATTTTAAATTTTTATTTTGTTATTATTGTTGTTGATTTAATGATGGATGAATCTGTTATGGATTGATTGTGTGTATTCTGCTATAGCATGCCCTTGCATTATGATTCTGTAAGGTCCAACTCAACTGGCAATGTCAATGTTGTTTAGTTGGACCCCTTCACTTGAGTCCTCGCAGTTGTGTGTGTGAGTTTCAGTAGTGTTTGTCACTTCGTCTGGAAAAAAAAAACAAGTTTTTTATATTCTCATTAAGGTGGGTTCAAGTGTGTGTTAGGAGTATGAAATTAGTTAATGAATTCAAACTTACAACGGTGAAGCGTAAACCAGCAGCTCAAGTAAATGATAAGGCAGGCTATGCCCTGAAAATGCCTCCAAGAAAAGCATTGCCACATTGCACGTATTAGATCGTTTGAAGAGGGAACTTTCTATTTAGACGAGTTATTTGTACCCATGCCTTAAATGTTGAAACTGTGATTTTGAAAGAGGAGGTATCTATACTTAAGGGTCTTCATAATACAGAATCTCCCTAATTTGGGCGAACTAAGAAAATGTATTGGAGGAGGATTTTGGAAGTGTTAGATAAATTCTTCAAATTCTTTTCGCGTTGTTATAATATCTTAAAAATATATTAATCATAAGCATTCTCTAATCATCCTCTACACAATCACTGTCTTAAATAAGGTGGGAGATTTCTATCTATTTTCCTCTCTTTCCCTCCCAAACAGAGCCTTCAGTTTCAAGGCAAGCAAGCAATGCATTAACGCTTATAGCTATGATCTAATAGAAATGTGATAGAAAGTGATGAAGTAAGATAAAGGTGCCTGGTTAGAAGAGACTGTTTGGCTAGAAGGATGTGGCATCAAATGAAAGAGGAAGATATTTCAAAGACTATCATTCTCTTTCCTAATTTGAAAGTAGTTGAAGGACTAACTTGATATATTGATAATAGTTTAAGGATTATTTATTATATTTTGATAGTTCAAAGACTTTATAGAAGAGAGAGTAGTAGTTTAGGGATCAAATTGATGGTTTATTTGTAAAAACATTGTAGTCCCTGGGCGAGCATTTCTGCAAGAGTTATCTTTATCCTTTGATTACAGAATGAGTCAGTCTATTGTCGAAATCAACCCATCATATTCACTGTTCGCACTTAATCGTTTCCAGCTTATTATGGGCATTTGCTGCATATTAACCTTTGGTTTCCATATTAACCTGCATATTGGGTTCAGTCAAATAATATACTTTCGCTTTTTCTGATGATGTAGGCCGATGAGAAAACAGAAGAGGAGCCTGAAATTACACATAGAGTTTTCTTGGATATTGATATTGATAAACAGCGTTTAGGTTGTGTAACAACATTTTCTTCTTCTTATCTTTTACCAATTGCTATTGCTACATCCATTCGTACCAATTTAACTTACTACGTATATTTGTTAGAAAAAGGATTAGGAAATATATTAGCAACAATTTATGCTCAATTAGTATGAATATTTAATTTATCCTTTTCCTTTTTACTATTAATATGGTGCGGTATGCAATAACTTCTGCAGGTAGGATCGTGATTGGATTATATGGCCAAGTGGTACCAAAAACTGTGGGTACGTCATTGGTTTTGTATTTTTGGATATGCATATTCTAAAGTGAGTCCTTACAATAGAAGAAACAAAAATAATATCAACTTGATAAGAAAATCAATGTTTGATAGGTATATATGTATACAGAACAAATTATATACTTATTAAAATTTGCTCTCTCGGCTTTCTCATCAACGATTGAGATGTTCTATACTTTTTTCCTTTCAAAATGAAATACACTATTCTTATTATCTTATGAAACTGCAATTTTTATTGACTGGAAATTTTCTATCTGCAGAAAATTTTAGAGCTTTGTGCACAGGTAATTATCGTCTTTTTTTTTTTTATGTTGTTCATTAAATATAAATTTATCCCCCATTTGGTCCATGCACTAATTATTAGTGTTCCATAATGTGTAGGGGAGAAAGGCGAGAGTGCAAGCGGTGTAAAGCTTCATTATAAAGGAACACCATTTCATCGGATAGTATCTGGTTTTGTGATTCAGGGTGGAGATATTGTTCATTGTGATGGCAAAGCATCTGAATCTATTTACGGTGGCACCTTTCCGGACGAGAATTTCAGGATTAAACATTCTCATGCTGGTGTGTGACAATTTGCTTGGGTTTAAGCATTTTGTTTTATTCGGAATACTTTACTTTTTATTAACTTTGACCTTTTTTTTTGTCATTTTTGAGGTATGCGTTTTAAGTTGTTTCATTGGAAACTTGCTCTATGGTTGCAGGCGTTGTCTCTATGGCTAATTCGGGACCTGATTCCAATGGTTCACAGTTTTTCTTTACCACAGTGAAGGCCAGTTGGTAAGTTACTTTGTCATGACAATGCACAATTTTGAACAATTTAGACTGAGTTTGTGCATGTGATATTGATTGATAGCCTGTCATGTGGGAAGATACAGCTTTCAAATATATAAATATGCCATCATCACTATTCATGTTATCAATTTCATTACAAATTTGATAGGTTGGATGGAGACCATGTTGTTTTTGGCAAGGTTGTTCAAGGCATGGATACCGTATTTGCAATTGAAGGGGGAGCTGGAACCTATAGTGGGAAACCGAGGAAGAAGGTAGTGATTGCGGACTCTGGAGAGATACCGAAGAGCAAGTGGGACGAGGAAAGTTGA

Protein sequence

>MS.gene063029.t1

MRREIAFLAQPRFLILLLVLSIFIIFAFSASKLADEKTEEEPEITHRVFLDIDIDKQRLGRIVIGLYGQVVPKTVENFRALCTGEKGESASGVKLHYKGTPFHRIVSGFVIQGGDIVHCDGKASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSNGSQFFFTTVKASWLDGDHVVFGKVVQGMDTVFAIEGGAGTYSGKPRKKVVIADSGEIPKSKWDEES