Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048458.t1 | XP_013460238.1 | 99 | 204 | 1 | 1 | 1 | 204 | 1 | 203 | 6.80E-109 | 403.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048458.t1 | Q9SP02 | 87.3 | 204 | 26 | 0 | 1 | 204 | 1 | 204 | 2.6e-101 | 369.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048458.t1 | I3S3K3 | 99.0 | 204 | 1 | 1 | 1 | 204 | 1 | 203 | 4.9e-109 | 403.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048458 | MS.gene024514 | PPI |
| MS.gene68153 | MS.gene048458 | PPI |
| MS.gene014216 | MS.gene048458 | PPI |
| MS.gene052269 | MS.gene048458 | PPI |
| MS.gene063104 | MS.gene048458 | PPI |
| MS.gene057696 | MS.gene048458 | PPI |
| MS.gene063787 | MS.gene048458 | PPI |
| MS.gene048458 | MS.gene003532 | PPI |
| MS.gene048458 | MS.gene052266 | PPI |
| MS.gene051153 | MS.gene048458 | PPI |
| MS.gene063029 | MS.gene048458 | PPI |
| MS.gene019366 | MS.gene048458 | PPI |
| MS.gene23663 | MS.gene048458 | PPI |
| MS.gene61767 | MS.gene048458 | PPI |
| MS.gene28963 | MS.gene048458 | PPI |
| MS.gene68752 | MS.gene048458 | PPI |
| MS.gene88451 | MS.gene048458 | PPI |
| MS.gene050574 | MS.gene048458 | PPI |
| MS.gene39668 | MS.gene048458 | PPI |
| MS.gene003412 | MS.gene048458 | PPI |
| MS.gene048458 | MS.gene007179 | PPI |
| MS.gene28703 | MS.gene048458 | PPI |
| MS.gene048458 | MS.gene23546 | PPI |
| MS.gene050281 | MS.gene048458 | PPI |
| MS.gene22872 | MS.gene048458 | PPI |
| MS.gene025980 | MS.gene048458 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048458.t1 | MTR_3g463900 | 99.020 | 204 | 1 | 1 | 1 | 204 | 1 | 203 | 1.73e-146 | 405 |
| MS.gene048458.t1 | MTR_3g070500 | 82.955 | 176 | 30 | 0 | 27 | 202 | 56 | 231 | 3.69e-108 | 310 |
| MS.gene048458.t1 | MTR_4g075290 | 67.647 | 170 | 55 | 0 | 33 | 202 | 2 | 171 | 1.61e-83 | 245 |
| MS.gene048458.t1 | MTR_7g116340 | 68.862 | 167 | 52 | 0 | 36 | 202 | 5 | 171 | 4.07e-83 | 244 |
| MS.gene048458.t1 | MTR_3g070500 | 83.459 | 133 | 22 | 0 | 27 | 159 | 56 | 188 | 6.53e-81 | 239 |
| MS.gene048458.t1 | MTR_4g073650 | 58.794 | 199 | 80 | 2 | 7 | 203 | 17 | 215 | 7.13e-81 | 240 |
| MS.gene048458.t1 | MTR_3g117750 | 67.665 | 167 | 54 | 0 | 36 | 202 | 13 | 179 | 1.37e-79 | 236 |
| MS.gene048458.t1 | MTR_1g085560 | 67.039 | 179 | 49 | 3 | 29 | 204 | 78 | 249 | 9.76e-78 | 233 |
| MS.gene048458.t1 | MTR_7g110980 | 59.788 | 189 | 64 | 3 | 21 | 204 | 78 | 259 | 8.27e-75 | 226 |
| MS.gene048458.t1 | MTR_1g117010 | 63.842 | 177 | 53 | 3 | 32 | 204 | 74 | 243 | 1.73e-72 | 220 |
| MS.gene048458.t1 | MTR_1g117010 | 63.842 | 177 | 53 | 3 | 32 | 204 | 74 | 243 | 1.73e-72 | 220 |
| MS.gene048458.t1 | MTR_7g095750 | 65.269 | 167 | 57 | 1 | 37 | 202 | 9 | 175 | 1.56e-70 | 226 |
| MS.gene048458.t1 | MTR_8g079690 | 59.763 | 169 | 66 | 2 | 36 | 202 | 5 | 173 | 3.44e-64 | 202 |
| MS.gene048458.t1 | MTR_3g070500 | 83.333 | 108 | 18 | 0 | 27 | 134 | 56 | 163 | 1.48e-63 | 194 |
| MS.gene048458.t1 | MTR_3g070500 | 83.178 | 107 | 18 | 0 | 27 | 133 | 56 | 162 | 5.04e-63 | 193 |
| MS.gene048458.t1 | MTR_4g086760 | 57.310 | 171 | 69 | 3 | 36 | 203 | 5 | 174 | 4.57e-62 | 196 |
| MS.gene048458.t1 | MTR_4g086760 | 57.310 | 171 | 69 | 3 | 36 | 203 | 5 | 174 | 6.41e-62 | 196 |
| MS.gene048458.t1 | MTR_4g086760 | 57.310 | 171 | 69 | 3 | 36 | 203 | 5 | 174 | 7.64e-62 | 196 |
| MS.gene048458.t1 | MTR_8g040180 | 56.548 | 168 | 69 | 3 | 37 | 202 | 20 | 185 | 1.76e-59 | 184 |
| MS.gene048458.t1 | MTR_3g107660 | 50.847 | 177 | 82 | 2 | 30 | 201 | 1 | 177 | 1.90e-49 | 172 |
| MS.gene048458.t1 | MTR_1g011980 | 52.907 | 172 | 79 | 2 | 31 | 201 | 3 | 173 | 3.39e-49 | 171 |
| MS.gene048458.t1 | MTR_2g085075 | 48.667 | 150 | 64 | 5 | 49 | 196 | 471 | 609 | 3.80e-35 | 130 |
| MS.gene048458.t1 | MTR_7g105220 | 49.624 | 133 | 55 | 4 | 49 | 180 | 19 | 140 | 7.97e-35 | 121 |
| MS.gene048458.t1 | MTR_3g085705 | 48.780 | 123 | 58 | 3 | 68 | 190 | 7 | 124 | 1.57e-31 | 111 |
| MS.gene048458.t1 | MTR_8g036015 | 48.529 | 136 | 58 | 4 | 47 | 181 | 8 | 132 | 6.50e-31 | 111 |
| MS.gene048458.t1 | MTR_5g015500 | 47.761 | 134 | 58 | 4 | 49 | 181 | 314 | 436 | 3.64e-28 | 110 |
| MS.gene048458.t1 | MTR_5g015500 | 47.761 | 134 | 58 | 4 | 49 | 181 | 354 | 476 | 6.14e-28 | 110 |
| MS.gene048458.t1 | MTR_2g023120 | 41.333 | 150 | 65 | 8 | 49 | 190 | 22 | 156 | 1.47e-21 | 92.0 |
| MS.gene048458.t1 | MTR_6g084140 | 37.342 | 158 | 78 | 7 | 49 | 196 | 10 | 156 | 5.00e-19 | 84.7 |
| MS.gene048458.t1 | MTR_6g084140 | 35.443 | 158 | 81 | 5 | 49 | 196 | 27 | 173 | 6.41e-19 | 84.7 |
| MS.gene048458.t1 | MTR_8g442420 | 36.709 | 158 | 79 | 7 | 49 | 196 | 10 | 156 | 7.22e-18 | 81.6 |
| MS.gene048458.t1 | MTR_1g094065 | 32.237 | 152 | 84 | 7 | 49 | 198 | 89 | 223 | 3.11e-13 | 66.2 |
| MS.gene048458.t1 | MTR_2g461260 | 29.487 | 156 | 78 | 6 | 49 | 182 | 92 | 237 | 2.70e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048458.t1 | AT2G29960 | 87.255 | 204 | 23 | 1 | 1 | 204 | 1 | 201 | 5.22e-129 | 361 |
| MS.gene048458.t1 | AT2G29960 | 87.255 | 204 | 23 | 1 | 1 | 204 | 1 | 201 | 5.22e-129 | 361 |
| MS.gene048458.t1 | AT5G58710 | 90.217 | 184 | 18 | 0 | 21 | 204 | 21 | 204 | 3.84e-124 | 349 |
| MS.gene048458.t1 | AT2G29960 | 83.824 | 204 | 20 | 2 | 1 | 204 | 1 | 191 | 1.42e-120 | 340 |
| MS.gene048458.t1 | AT3G55920 | 68.981 | 216 | 48 | 1 | 8 | 204 | 13 | 228 | 4.09e-104 | 299 |
| MS.gene048458.t1 | AT4G38740 | 69.461 | 167 | 51 | 0 | 36 | 202 | 5 | 171 | 1.53e-84 | 248 |
| MS.gene048458.t1 | AT2G21130 | 70.060 | 167 | 50 | 0 | 36 | 202 | 6 | 172 | 3.09e-84 | 247 |
| MS.gene048458.t1 | AT2G16600 | 69.461 | 167 | 51 | 0 | 36 | 202 | 6 | 172 | 1.25e-83 | 245 |
| MS.gene048458.t1 | AT4G34960 | 61.000 | 200 | 73 | 3 | 5 | 203 | 21 | 216 | 1.30e-82 | 245 |
| MS.gene048458.t1 | AT3G56070 | 69.461 | 167 | 51 | 0 | 36 | 202 | 5 | 171 | 2.58e-82 | 242 |
| MS.gene048458.t1 | AT3G56070 | 69.461 | 167 | 51 | 0 | 36 | 202 | 5 | 171 | 2.58e-82 | 242 |
| MS.gene048458.t1 | AT3G62030 | 62.827 | 191 | 59 | 3 | 19 | 204 | 74 | 257 | 2.02e-79 | 238 |
| MS.gene048458.t1 | AT3G62030 | 66.292 | 178 | 52 | 2 | 28 | 204 | 88 | 258 | 7.73e-79 | 236 |
| MS.gene048458.t1 | AT3G62030 | 66.292 | 178 | 52 | 2 | 28 | 204 | 141 | 311 | 3.48e-78 | 236 |
| MS.gene048458.t1 | AT5G13120 | 62.032 | 187 | 60 | 3 | 22 | 204 | 77 | 256 | 3.52e-78 | 235 |
| MS.gene048458.t1 | AT5G13120 | 62.032 | 187 | 60 | 3 | 22 | 204 | 73 | 252 | 3.69e-78 | 234 |
| MS.gene048458.t1 | AT4G34870 | 65.269 | 167 | 58 | 0 | 36 | 202 | 5 | 171 | 7.37e-76 | 226 |
| MS.gene048458.t1 | AT3G63400 | 63.372 | 172 | 62 | 1 | 31 | 201 | 3 | 174 | 4.37e-69 | 216 |
| MS.gene048458.t1 | AT3G63400 | 63.372 | 172 | 62 | 1 | 31 | 201 | 3 | 174 | 4.09e-67 | 216 |
| MS.gene048458.t1 | AT3G63400 | 63.372 | 172 | 62 | 1 | 31 | 201 | 3 | 174 | 4.09e-67 | 216 |
| MS.gene048458.t1 | AT3G63400 | 63.372 | 172 | 62 | 1 | 31 | 201 | 3 | 174 | 4.09e-67 | 216 |
| MS.gene048458.t1 | AT2G15790 | 60.819 | 171 | 65 | 2 | 35 | 203 | 4 | 174 | 2.89e-66 | 207 |
| MS.gene048458.t1 | AT4G34960 | 60.645 | 155 | 57 | 2 | 5 | 159 | 21 | 171 | 6.14e-63 | 193 |
| MS.gene048458.t1 | AT2G16600 | 58.084 | 167 | 48 | 1 | 36 | 202 | 6 | 150 | 8.53e-62 | 189 |
| MS.gene048458.t1 | AT2G38730 | 56.548 | 168 | 69 | 3 | 37 | 202 | 34 | 199 | 4.20e-59 | 184 |
| MS.gene048458.t1 | AT3G22920 | 52.047 | 171 | 70 | 5 | 36 | 202 | 5 | 167 | 1.11e-49 | 161 |
| MS.gene048458.t1 | AT4G32420 | 51.163 | 172 | 83 | 1 | 31 | 201 | 3 | 174 | 1.53e-46 | 164 |
| MS.gene048458.t1 | AT4G32420 | 51.163 | 172 | 83 | 1 | 31 | 201 | 3 | 174 | 1.53e-46 | 164 |
| MS.gene048458.t1 | AT4G32420 | 51.163 | 172 | 83 | 1 | 31 | 201 | 3 | 174 | 1.53e-46 | 164 |
| MS.gene048458.t1 | AT4G32420 | 51.163 | 172 | 83 | 1 | 31 | 201 | 3 | 174 | 1.53e-46 | 164 |
| MS.gene048458.t1 | AT4G32420 | 51.534 | 163 | 78 | 1 | 31 | 192 | 3 | 165 | 6.98e-44 | 156 |
| MS.gene048458.t1 | AT2G36130 | 49.624 | 133 | 55 | 4 | 49 | 180 | 19 | 140 | 3.44e-35 | 122 |
| MS.gene048458.t1 | AT3G44600 | 52.239 | 134 | 52 | 4 | 49 | 181 | 485 | 607 | 5.40e-35 | 130 |
| MS.gene048458.t1 | AT1G01940 | 49.265 | 136 | 57 | 4 | 47 | 181 | 8 | 132 | 8.88e-32 | 113 |
| MS.gene048458.t1 | AT5G67530 | 43.137 | 153 | 74 | 5 | 49 | 199 | 353 | 494 | 7.14e-28 | 110 |
| MS.gene048458.t1 | AT4G33060 | 42.537 | 134 | 62 | 6 | 49 | 180 | 22 | 142 | 3.29e-25 | 102 |
| MS.gene048458.t1 | AT1G53720 | 36.076 | 158 | 80 | 7 | 49 | 196 | 10 | 156 | 2.92e-18 | 82.0 |
| MS.gene048458.t1 | AT1G53720 | 36.076 | 158 | 80 | 7 | 49 | 196 | 10 | 156 | 4.68e-18 | 82.0 |
Find 46 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAACCCTATCTCTTATTC+AGG | 0.273643 | 3.1:-48014882 | MS.gene048458:intron |
| TACTTTGATGTTCAGATTGA+TGG | 0.308620 | 3.1:-48014634 | MS.gene048458:CDS |
| TGAAAACCTGAATAAGAGAT+AGG | 0.339693 | 3.1:+48014876 | None:intergenic |
| TATCAAATTATTAGGGGAAA+AGG | 0.349692 | 3.1:-48013506 | MS.gene048458:intron |
| AATTGTGAGCCATTGGTATC+AGG | 0.377359 | 3.1:+48013163 | None:intergenic |
| TTTCCAGGTCGTGTTGTAAT+AGG | 0.378640 | 3.1:-48014057 | MS.gene048458:intron |
| ATCAAATTATTAGGGGAAAA+GGG | 0.388380 | 3.1:-48013505 | MS.gene048458:intron |
| GAAAAGGGGACTGGTAAATC+TGG | 0.408683 | 3.1:-48013490 | MS.gene048458:CDS |
| AGCAATCACAACCTTGCTCT+TGG | 0.426225 | 3.1:+48011850 | None:intergenic |
| CAGATTGATGGAAAGGATGC+AGG | 0.430835 | 3.1:-48014622 | MS.gene048458:intron |
| TTTACACATGGCAATGGAAT+GGG | 0.433694 | 3.1:-48013397 | MS.gene048458:CDS |
| TTAATTAATGCAGGCAAAGA+AGG | 0.437139 | 3.1:-48014692 | MS.gene048458:intron |
| TGGAAAGGTGCTTTCGGGAA+TGG | 0.451229 | 3.1:-48011918 | MS.gene048458:CDS |
| ATGGGCGGAGAATCAATTTA+CGG | 0.458516 | 3.1:-48013379 | MS.gene048458:CDS |
| GAAGGCGAAAGAGGATTTGA+AGG | 0.459280 | 3.1:-48014674 | MS.gene048458:CDS |
| GCAATCACAACCTTGCTCTT+GGG | 0.462284 | 3.1:+48011851 | None:intergenic |
| AAGCTAAAGCACACTGGTCC+AGG | 0.474279 | 3.1:-48013331 | MS.gene048458:intron |
| TAAAGCTAGGGATGATCCTA+TGG | 0.493456 | 3.1:+48013437 | None:intergenic |
| CCTCCTTGGATCATAAAGCT+AGG | 0.503079 | 3.1:+48013424 | None:intergenic |
| ATGAGAGGATGCACTTATAG+AGG | 0.504255 | 3.1:+48011812 | None:intergenic |
| AACTTCCGAGCTCTTTGCAC+AGG | 0.508572 | 3.1:-48013910 | MS.gene048458:intron |
| GAGCTACCTTTGTAATGAAG+AGG | 0.529680 | 3.1:+48013463 | None:intergenic |
| GAAAACCTGAATAAGAGATA+GGG | 0.530691 | 3.1:+48014877 | None:intergenic |
| GCAGGCAAAGAAGGCGAAAG+AGG | 0.535933 | 3.1:-48014683 | MS.gene048458:intron |
| ATCCCTAGCTTTATGATCCA+AGG | 0.540748 | 3.1:-48013427 | MS.gene048458:CDS |
| TTACAACTGTGACAACTAGC+TGG | 0.546464 | 3.1:-48013135 | MS.gene048458:intron |
| CTCCTTGGATCATAAAGCTA+GGG | 0.549400 | 3.1:+48013425 | None:intergenic |
| TGATGTTCAGATTGATGGAA+AGG | 0.550732 | 3.1:-48014629 | MS.gene048458:CDS |
| GCTCACCTGTGCAAAGAGCT+CGG | 0.558048 | 3.1:+48013905 | None:intergenic |
| TCAAATTATTAGGGGAAAAG+GGG | 0.566883 | 3.1:-48013504 | MS.gene048458:intron |
| CATGTGTAAAATCACCTCCT+TGG | 0.569371 | 3.1:+48013410 | None:intergenic |
| TTATTAGGGGAAAAGGGGAC+TGG | 0.573787 | 3.1:-48013499 | MS.gene048458:intron |
| CTGTCGATAGGTTGGACGGA+AGG | 0.581130 | 3.1:-48011952 | MS.gene048458:intron |
| GTTTACAAGATTGAAGCTGA+AGG | 0.584212 | 3.1:-48011890 | MS.gene048458:CDS |
| ACAAAGGTAGCTCATTCCAT+AGG | 0.592512 | 3.1:-48013453 | MS.gene048458:CDS |
| AAGTGGAACTCCCAAGAGCA+AGG | 0.609812 | 3.1:-48011861 | MS.gene048458:CDS |
| AAGGTTGTGATTGCTGATAG+TGG | 0.613906 | 3.1:-48011842 | MS.gene048458:CDS |
| GGAAAGCCTCTTCATTACAA+AGG | 0.618832 | 3.1:-48013469 | MS.gene048458:CDS |
| ATATCTGTCGATAGGTTGGA+CGG | 0.625910 | 3.1:-48011956 | MS.gene048458:intron |
| ACACATGGCAATGGAATGGG+CGG | 0.629266 | 3.1:-48013394 | MS.gene048458:CDS |
| GAAGCTGAAGGAAATCAAAG+TGG | 0.632748 | 3.1:-48011878 | MS.gene048458:CDS |
| TTTGAAGGAAGTGACAAACA+AGG | 0.637543 | 3.1:-48014659 | MS.gene048458:CDS |
| AACTTCAAGCTAAAGCACAC+TGG | 0.639521 | 3.1:-48013337 | MS.gene048458:CDS |
| AATGCTGGTCCTGATACCAA+TGG | 0.648723 | 3.1:-48013172 | MS.gene048458:CDS |
| TAAGAGATAGGGTTCCAAAG+AGG | 0.673170 | 3.1:+48014888 | None:intergenic |
| CCTAGCTTTATGATCCAAGG+AGG | 0.717819 | 3.1:-48013424 | MS.gene048458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTGTATCAAATTATTA+GGG | - | chr3.1:48013239-48013258 | MS.gene048458:intron | 10.0% |
| !! | TTTATTTGTATCAAATTATT+AGG | - | chr3.1:48013238-48013257 | MS.gene048458:intron | 10.0% |
| !!! | TTTTTTATAAATATACACAA+TGG | + | chr3.1:48014042-48014061 | None:intergenic | 10.0% |
| !! | AACCAAATAACAAATTTATT+GGG | + | chr3.1:48012437-48012456 | None:intergenic | 15.0% |
| !! | TAACCAAATAACAAATTTAT+TGG | + | chr3.1:48012438-48012457 | None:intergenic | 15.0% |
| !! | TATTAAATGTTATTAGGAAA+TGG | + | chr3.1:48013131-48013150 | None:intergenic | 15.0% |
| !! | TATTTGTATCAAATTATTAG+GGG | - | chr3.1:48013240-48013259 | MS.gene048458:intron | 15.0% |
| !! | TCAGTATATTAAATGTTATT+AGG | + | chr3.1:48013137-48013156 | None:intergenic | 15.0% |
| !! | TTGTAATTATTCTAATATCA+CGG | - | chr3.1:48011929-48011948 | MS.gene048458:CDS | 15.0% |
| !!! | ATTTTTTTGTTAATTAATGC+AGG | - | chr3.1:48012051-48012070 | MS.gene048458:intron | 15.0% |
| !! | ATTAAGCAAACATAAGTTAA+AGG | + | chr3.1:48013096-48013115 | None:intergenic | 20.0% |
| !! | ATTATTAAAAAGATCACCTT+TGG | + | chr3.1:48014343-48014362 | None:intergenic | 20.0% |
| !! | TAATCTGAGAAAAAAAAATG+TGG | - | chr3.1:48014133-48014152 | MS.gene048458:intron | 20.0% |
| !! | TCAAAATATCTGTATATTCA+TGG | - | chr3.1:48012759-48012778 | MS.gene048458:intron | 20.0% |
| !! | TCGAAAAAAGAAACTTTATT+TGG | + | chr3.1:48014367-48014386 | None:intergenic | 20.0% |
| !! | TTAAATAAATTTGTGAGTCA+GGG | + | chr3.1:48014411-48014430 | None:intergenic | 20.0% |
| !! | TTAATTATGTGTCTATAAGT+AGG | + | chr3.1:48013038-48013057 | None:intergenic | 20.0% |
| !! | TTCTTCTCTAATAAAAAATG+AGG | + | chr3.1:48014547-48014566 | None:intergenic | 20.0% |
| !!! | ATACTGATTAAAGAATATAC+AGG | + | chr3.1:48014663-48014682 | None:intergenic | 20.0% |
| !!! | GTTTCTTTTTTCGAAATATA+AGG | - | chr3.1:48014373-48014392 | MS.gene048458:intron | 20.0% |
| !!! | TACCCAATAAATTTGTTATT+TGG | - | chr3.1:48012432-48012451 | MS.gene048458:intron | 20.0% |
| !!! | TTAAGTTCATTATTTTCTGT+TGG | - | chr3.1:48012192-48012211 | MS.gene048458:intron | 20.0% |
| ! | AAATTAATAGCACAAATGAC+AGG | + | chr3.1:48014749-48014768 | None:intergenic | 25.0% |
| ! | ACAGAGAATTTAAACTAGTT+TGG | - | chr3.1:48012638-48012657 | MS.gene048458:intron | 25.0% |
| ! | ACATAATTAAGTTTATCTGG+TGG | - | chr3.1:48013048-48013067 | MS.gene048458:intron | 25.0% |
| ! | ATAGGAGTAGATAACTAATT+AGG | - | chr3.1:48013763-48013782 | MS.gene048458:intron | 25.0% |
| ! | ATATTCTGATAGATGTTGAT+AGG | - | chr3.1:48013745-48013764 | MS.gene048458:intron | 25.0% |
| ! | ATCAAATTATTAGGGGAAAA+GGG | - | chr3.1:48013247-48013266 | MS.gene048458:intron | 25.0% |
| ! | CAAACAAAAGAGACATTTAA+TGG | - | chr3.1:48012367-48012386 | MS.gene048458:intron | 25.0% |
| ! | GAAATCATGATAGTTAACAT+TGG | + | chr3.1:48013842-48013861 | None:intergenic | 25.0% |
| ! | GACACATAATTAAGTTTATC+TGG | - | chr3.1:48013045-48013064 | MS.gene048458:intron | 25.0% |
| ! | GTTAAATAAATTTGTGAGTC+AGG | + | chr3.1:48014412-48014431 | None:intergenic | 25.0% |
| ! | TAAATGTTATTAGGAAATGG+AGG | + | chr3.1:48013128-48013147 | None:intergenic | 25.0% |
| ! | TAAGGAATTCGTATGAAAAT+TGG | - | chr3.1:48012527-48012546 | MS.gene048458:intron | 25.0% |
| ! | TAATGTATATATCTGTCGAT+AGG | - | chr3.1:48014788-48014807 | MS.gene048458:intron | 25.0% |
| ! | TACAGAAACATGTAAAATGT+TGG | + | chr3.1:48014093-48014112 | None:intergenic | 25.0% |
| ! | TATCAAATTATTAGGGGAAA+AGG | - | chr3.1:48013246-48013265 | MS.gene048458:intron | 25.0% |
| ! | TGATACATATGGTTTAAAAG+AGG | + | chr3.1:48014267-48014286 | None:intergenic | 25.0% |
| ! | TGGTTAATTGAAGTGATTTA+AGG | - | chr3.1:48012452-48012471 | MS.gene048458:intron | 25.0% |
| !! | AACTAGTTTAAATTCTCTGT+TGG | + | chr3.1:48012638-48012657 | None:intergenic | 25.0% |
| !! | ATCAACAGGATTTTTATCAA+TGG | - | chr3.1:48013555-48013574 | MS.gene048458:intron | 25.0% |
| !! | ATTTGAACATGTGTTTTCTT+TGG | + | chr3.1:48013678-48013697 | None:intergenic | 25.0% |
| !! | GTGATATCATCTAAAATGAA+GGG | - | chr3.1:48012474-48012493 | MS.gene048458:intron | 25.0% |
| !! | TTCTCTTTAGTTAGTCATTT+TGG | - | chr3.1:48012309-48012328 | MS.gene048458:intron | 25.0% |
| !!! | CAGAATATGCTTTAGAAAAA+TGG | + | chr3.1:48013733-48013752 | None:intergenic | 25.0% |
| !!! | GCTTTAGAAAAATGGAAAAA+AGG | + | chr3.1:48013725-48013744 | None:intergenic | 25.0% |
| !!! | TGTTATTTCGTTAGTCAATT+TGG | - | chr3.1:48012337-48012356 | MS.gene048458:intron | 25.0% |
| AACCATATGTATCACGTAAT+CGG | - | chr3.1:48014273-48014292 | MS.gene048458:intron | 30.0% | |
| AAGTTCAAATGAATCTGTGA+TGG | - | chr3.1:48013491-48013510 | MS.gene048458:CDS | 30.0% | |
| AATGAAAAATTGTGAGCCAT+TGG | + | chr3.1:48013599-48013618 | None:intergenic | 30.0% | |
| AATTATAACACCTGTTCCAA+AGG | - | chr3.1:48014324-48014343 | MS.gene048458:intron | 30.0% | |
| AGTTAAGTGATGTGAAATGA+GGG | - | chr3.1:48012597-48012616 | MS.gene048458:intron | 30.0% | |
| AGTTCAAATGAATCTGTGAT+GGG | - | chr3.1:48013492-48013511 | MS.gene048458:CDS | 30.0% | |
| AGTTTATCTGGTGGAATATA+TGG | - | chr3.1:48013057-48013076 | MS.gene048458:intron | 30.0% | |
| ATGTGATATAAGTGAGAAAG+AGG | - | chr3.1:48014241-48014260 | MS.gene048458:intron | 30.0% | |
| GAAAACCTGAATAAGAGATA+GGG | + | chr3.1:48011878-48011897 | None:intergenic | 30.0% | |
| GAGAATAAAATAGAAGACGA+AGG | - | chr3.1:48013891-48013910 | MS.gene048458:intron | 30.0% | |
| GAGGCTAATTCTTCTAATTA+AGG | - | chr3.1:48012509-48012528 | MS.gene048458:intron | 30.0% | |
| TACTTTGATGTTCAGATTGA+TGG | - | chr3.1:48012118-48012137 | MS.gene048458:intron | 30.0% | |
| TATGAATTCGCAATTGTGTT+TGG | - | chr3.1:48012012-48012031 | MS.gene048458:intron | 30.0% | |
| TCAAATTATTAGGGGAAAAG+GGG | - | chr3.1:48013248-48013267 | MS.gene048458:intron | 30.0% | |
| TGAAAACCTGAATAAGAGAT+AGG | + | chr3.1:48011879-48011898 | None:intergenic | 30.0% | |
| TGCACCACTTATTATAAAAG+AGG | + | chr3.1:48014176-48014195 | None:intergenic | 30.0% | |
| TGTATGTCATGTCATGATTA+CGG | + | chr3.1:48014626-48014645 | None:intergenic | 30.0% | |
| TGTTGTTGGTACTATTTGAT+GGG | - | chr3.1:48014513-48014532 | MS.gene048458:intron | 30.0% | |
| TTAATTAATGCAGGCAAAGA+AGG | - | chr3.1:48012060-48012079 | MS.gene048458:intron | 30.0% | |
| TTGTTCAGTCTCATATTTAC+AGG | - | chr3.1:48014446-48014465 | MS.gene048458:intron | 30.0% | |
| TTTCGAAATATAAGGTGCAT+TGG | - | chr3.1:48014381-48014400 | MS.gene048458:intron | 30.0% | |
| ! | AAGGCCTCTTTTATAATAAG+TGG | - | chr3.1:48014169-48014188 | MS.gene048458:intron | 30.0% |
| ! | GGTGATATCATCTAAAATGA+AGG | - | chr3.1:48012473-48012492 | MS.gene048458:intron | 30.0% |
| ! | GTGTTGTAATAGGTCTTTTT+GGG | - | chr3.1:48012705-48012724 | MS.gene048458:intron | 30.0% |
| ! | TTGTTGTTGGTACTATTTGA+TGG | - | chr3.1:48014512-48014531 | MS.gene048458:intron | 30.0% |
| ! | TTTTTATCAATGGCAAATGC+TGG | - | chr3.1:48013565-48013584 | MS.gene048458:intron | 30.0% |
| !!! | TTGTCATTTTCTGTATCAAC+AGG | - | chr3.1:48013541-48013560 | MS.gene048458:intron | 30.0% |
| ACCATATGTATCACGTAATC+GGG | - | chr3.1:48014274-48014293 | MS.gene048458:intron | 35.0% | |
| AGACAGATAGAACATTTACC+TGG | + | chr3.1:48013442-48013461 | None:intergenic | 35.0% | |
| ATCGGGAACAAAATGGAAAA+AGG | - | chr3.1:48014291-48014310 | MS.gene048458:intron | 35.0% | |
| CAGTCTCATATTTACAGGAA+AGG | - | chr3.1:48014451-48014470 | MS.gene048458:intron | 35.0% | |
| CTTATATCACATGTTGTCGT+AGG | + | chr3.1:48014233-48014252 | None:intergenic | 35.0% | |
| GAGTTAAGTGATGTGAAATG+AGG | - | chr3.1:48012596-48012615 | MS.gene048458:intron | 35.0% | |
| GTATATATCTGTCGATAGGT+TGG | - | chr3.1:48014792-48014811 | MS.gene048458:intron | 35.0% | |
| GTTCAAATGAATCTGTGATG+GGG | - | chr3.1:48013493-48013512 | MS.gene048458:CDS | 35.0% | |
| GTTTACAAGATTGAAGCTGA+AGG | - | chr3.1:48014862-48014881 | MS.gene048458:intron | 35.0% | |
| TACCAACAACAAAATGATCG+TGG | + | chr3.1:48014504-48014523 | None:intergenic | 35.0% | |
| TATCACTGTCTGAACTTATG+AGG | - | chr3.1:48013157-48013176 | MS.gene048458:CDS | 35.0% | |
| TCATGATTACGGAAGAATTG+AGG | + | chr3.1:48014615-48014634 | None:intergenic | 35.0% | |
| TCTACACAGTATACTCATGT+TGG | + | chr3.1:48013873-48013892 | None:intergenic | 35.0% | |
| TGATGTTCAGATTGATGGAA+AGG | - | chr3.1:48012123-48012142 | MS.gene048458:intron | 35.0% | |
| TTTACACATGGCAATGGAAT+GGG | - | chr3.1:48013355-48013374 | MS.gene048458:CDS | 35.0% | |
| TTTGAAGGAAGTGACAAACA+AGG | - | chr3.1:48012093-48012112 | MS.gene048458:intron | 35.0% | |
| ! | AAAACCATACCTGCAGTTTT+TGG | + | chr3.1:48012740-48012759 | None:intergenic | 35.0% |
| ! | CAAAAGGGTACATCAAAACA+AGG | + | chr3.1:48012817-48012836 | None:intergenic | 35.0% |
| ! | CGTGTTGTAATAGGTCTTTT+TGG | - | chr3.1:48012704-48012723 | MS.gene048458:intron | 35.0% |
| ! | TTGTGACTCTTTTACTTTCC+AGG | - | chr3.1:48012680-48012699 | MS.gene048458:intron | 35.0% |
| ! | TTTTACACATGGCAATGGAA+TGG | - | chr3.1:48013354-48013373 | MS.gene048458:CDS | 35.0% |
| !! | AAAAAGATCACCTTTGGAAC+AGG | + | chr3.1:48014337-48014356 | None:intergenic | 35.0% |
| !! | ATCCACGATCATTTTGTTGT+TGG | - | chr3.1:48014499-48014518 | MS.gene048458:intron | 35.0% |
| !!! | AAGGCATGTTGTTTTTGGAA+AGG | - | chr3.1:48014819-48014838 | MS.gene048458:intron | 35.0% |
| !!! | TGTTTTTGGAAAGGTGCTTT+CGG | - | chr3.1:48014828-48014847 | MS.gene048458:intron | 35.0% |
| AACTTCAAGCTAAAGCACAC+TGG | - | chr3.1:48013415-48013434 | MS.gene048458:CDS | 40.0% | |
| AAGAACCGATGACTATCAGT+TGG | - | chr3.1:48012996-48013015 | MS.gene048458:intron | 40.0% | |
| AAGACAGTTCCAAAAACTGC+AGG | - | chr3.1:48012728-48012747 | MS.gene048458:intron | 40.0% | |
| AAGGTTGTGATTGCTGATAG+TGG | - | chr3.1:48014910-48014929 | MS.gene048458:CDS | 40.0% | |
| AATTGTGAGCCATTGGTATC+AGG | + | chr3.1:48013592-48013611 | None:intergenic | 40.0% | |
| ACAAAGGTAGCTCATTCCAT+AGG | - | chr3.1:48013299-48013318 | MS.gene048458:intron | 40.0% | |
| ACAAGCCAACTGATAGTCAT+CGG | + | chr3.1:48013004-48013023 | None:intergenic | 40.0% | |
| AGTTCCAAAAACTGCAGGTA+TGG | - | chr3.1:48012733-48012752 | MS.gene048458:intron | 40.0% | |
| ATGGGCGGAGAATCAATTTA+CGG | - | chr3.1:48013373-48013392 | MS.gene048458:CDS | 40.0% | |
| ATGTGGCGTAAGTGAGAAAA+AGG | - | chr3.1:48014150-48014169 | MS.gene048458:intron | 40.0% | |
| CATGTGTAAAATCACCTCCT+TGG | + | chr3.1:48013345-48013364 | None:intergenic | 40.0% | |
| CTCCTTGGATCATAAAGCTA+GGG | + | chr3.1:48013330-48013349 | None:intergenic | 40.0% | |
| GAAGCTGAAGGAAATCAAAG+TGG | - | chr3.1:48014874-48014893 | MS.gene048458:intron | 40.0% | |
| GAGCTACCTTTGTAATGAAG+AGG | + | chr3.1:48013292-48013311 | None:intergenic | 40.0% | |
| GGAAAGCCTCTTCATTACAA+AGG | - | chr3.1:48013283-48013302 | MS.gene048458:intron | 40.0% | |
| TAAAGCTAGGGATGATCCTA+TGG | + | chr3.1:48013318-48013337 | None:intergenic | 40.0% | |
| TAAGAGATAGGGTTCCAAAG+AGG | + | chr3.1:48011867-48011886 | None:intergenic | 40.0% | |
| TCACGTAATCGGGAACAAAA+TGG | - | chr3.1:48014284-48014303 | MS.gene048458:intron | 40.0% | |
| TCCCGATTACGTGATACATA+TGG | + | chr3.1:48014278-48014297 | None:intergenic | 40.0% | |
| TGGAACCCTATCTCTTATTC+AGG | - | chr3.1:48011870-48011889 | MS.gene048458:CDS | 40.0% | |
| TTACAACTGTGACAACTAGC+TGG | - | chr3.1:48013617-48013636 | MS.gene048458:intron | 40.0% | |
| TTTCCAGGTCGTGTTGTAAT+AGG | - | chr3.1:48012695-48012714 | MS.gene048458:intron | 40.0% | |
| ! | ATATCTGTCGATAGGTTGGA+CGG | - | chr3.1:48014796-48014815 | MS.gene048458:intron | 40.0% |
| ! | CAAGGAGGTGATTTTACACA+TGG | - | chr3.1:48013343-48013362 | MS.gene048458:CDS | 40.0% |
| ! | CTCGGAAGTTTTCTGCAAAA+GGG | + | chr3.1:48012832-48012851 | None:intergenic | 40.0% |
| ! | CTCTTTTCACTGTTCCTCTT+TGG | - | chr3.1:48011850-48011869 | MS.gene048458:CDS | 40.0% |
| ! | GGTGATTTTACACATGGCAA+TGG | - | chr3.1:48013349-48013368 | MS.gene048458:CDS | 40.0% |
| !! | ACTATCAGTTGGCTTGTAAC+TGG | - | chr3.1:48013007-48013026 | MS.gene048458:intron | 40.0% |
| !! | ATCCCTAGCTTTATGATCCA+AGG | - | chr3.1:48013325-48013344 | MS.gene048458:intron | 40.0% |
| !!! | GTTTTTGGAAAGGTGCTTTC+GGG | - | chr3.1:48014829-48014848 | MS.gene048458:intron | 40.0% |
| AATGCTGGTCCTGATACCAA+TGG | - | chr3.1:48013580-48013599 | MS.gene048458:intron | 45.0% | |
| AGACCTATTACAACACGACC+TGG | + | chr3.1:48012701-48012720 | None:intergenic | 45.0% | |
| AGCAATCACAACCTTGCTCT+TGG | + | chr3.1:48014905-48014924 | None:intergenic | 45.0% | |
| CAGATTGATGGAAAGGATGC+AGG | - | chr3.1:48012130-48012149 | MS.gene048458:intron | 45.0% | |
| CCTCCTTGGATCATAAAGCT+AGG | + | chr3.1:48013331-48013350 | None:intergenic | 45.0% | |
| GAAGGCGAAAGAGGATTTGA+AGG | - | chr3.1:48012078-48012097 | MS.gene048458:intron | 45.0% | |
| GCAATCACAACCTTGCTCTT+GGG | + | chr3.1:48014904-48014923 | None:intergenic | 45.0% | |
| GTCTCTGAATGTGTCAGACA+CGG | - | chr3.1:48012239-48012258 | MS.gene048458:intron | 45.0% | |
| TTATTAGGGGAAAAGGGGAC+TGG | - | chr3.1:48013253-48013272 | MS.gene048458:intron | 45.0% | |
| ! | GAAAAGGGGACTGGTAAATC+TGG | - | chr3.1:48013262-48013281 | MS.gene048458:intron | 45.0% |
| ! | GCTCGGAAGTTTTCTGCAAA+AGG | + | chr3.1:48012833-48012852 | None:intergenic | 45.0% |
| !! | CAGTTGGCTTGTAACTGGAT+AGG | - | chr3.1:48013012-48013031 | MS.gene048458:intron | 45.0% |
| !! | CCTAGCTTTATGATCCAAGG+AGG | - | chr3.1:48013328-48013347 | MS.gene048458:intron | 45.0% |
| !!! | GACGGAAGGCATGTTGTTTT+TGG | - | chr3.1:48014814-48014833 | MS.gene048458:intron | 45.0% |
| !!! | TTTTTTATAAATATACATAA+TGG | + | chr3.1:48013935-48013954 | None:intergenic | 5.0% |
| AACTTCCGAGCTCTTTGCAC+AGG | - | chr3.1:48012842-48012861 | MS.gene048458:intron | 50.0% | |
| AAGCTAAAGCACACTGGTCC+AGG | - | chr3.1:48013421-48013440 | MS.gene048458:CDS | 50.0% | |
| AAGTGGAACTCCCAAGAGCA+AGG | - | chr3.1:48014891-48014910 | MS.gene048458:CDS | 50.0% | |
| ACACATGGCAATGGAATGGG+CGG | - | chr3.1:48013358-48013377 | MS.gene048458:CDS | 50.0% | |
| TGCGTCAAAACTGCATGCAG+CGG | + | chr3.1:48013799-48013818 | None:intergenic | 50.0% | |
| ! | TGAAGGGTGTGCGTGTATAG+AGG | - | chr3.1:48012490-48012509 | MS.gene048458:intron | 50.0% |
| !! | TGGAAAGGTGCTTTCGGGAA+TGG | - | chr3.1:48014834-48014853 | MS.gene048458:intron | 50.0% |
| GCAGGCAAAGAAGGCGAAAG+AGG | - | chr3.1:48012069-48012088 | MS.gene048458:intron | 55.0% | |
| GCTCACCTGTGCAAAGAGCT+CGG | + | chr3.1:48012850-48012869 | None:intergenic | 55.0% | |
| ! | CTGTCGATAGGTTGGACGGA+AGG | - | chr3.1:48014800-48014819 | MS.gene048458:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 48011826 | 48014948 | 48011826 | ID=MS.gene048458 |
| chr3.1 | mRNA | 48011826 | 48014948 | 48011826 | ID=MS.gene048458.t1;Parent=MS.gene048458 |
| chr3.1 | exon | 48014883 | 48014948 | 48014883 | ID=MS.gene048458.t1.exon1;Parent=MS.gene048458.t1 |
| chr3.1 | CDS | 48014883 | 48014948 | 48014883 | ID=cds.MS.gene048458.t1;Parent=MS.gene048458.t1 |
| chr3.1 | exon | 48014623 | 48014701 | 48014623 | ID=MS.gene048458.t1.exon2;Parent=MS.gene048458.t1 |
| chr3.1 | CDS | 48014623 | 48014701 | 48014623 | ID=cds.MS.gene048458.t1;Parent=MS.gene048458.t1 |
| chr3.1 | exon | 48014025 | 48014072 | 48014025 | ID=MS.gene048458.t1.exon3;Parent=MS.gene048458.t1 |
| chr3.1 | CDS | 48014025 | 48014072 | 48014025 | ID=cds.MS.gene048458.t1;Parent=MS.gene048458.t1 |
| chr3.1 | exon | 48013911 | 48013934 | 48013911 | ID=MS.gene048458.t1.exon4;Parent=MS.gene048458.t1 |
| chr3.1 | CDS | 48013911 | 48013934 | 48013911 | ID=cds.MS.gene048458.t1;Parent=MS.gene048458.t1 |
| chr3.1 | exon | 48013332 | 48013514 | 48013332 | ID=MS.gene048458.t1.exon5;Parent=MS.gene048458.t1 |
| chr3.1 | CDS | 48013332 | 48013514 | 48013332 | ID=cds.MS.gene048458.t1;Parent=MS.gene048458.t1 |
| chr3.1 | exon | 48013136 | 48013211 | 48013136 | ID=MS.gene048458.t1.exon6;Parent=MS.gene048458.t1 |
| chr3.1 | CDS | 48013136 | 48013211 | 48013136 | ID=cds.MS.gene048458.t1;Parent=MS.gene048458.t1 |
| chr3.1 | exon | 48011826 | 48011964 | 48011826 | ID=MS.gene048458.t1.exon7;Parent=MS.gene048458.t1 |
| chr3.1 | CDS | 48011826 | 48011964 | 48011826 | ID=cds.MS.gene048458.t1;Parent=MS.gene048458.t1 |
| Gene Sequence |
| Protein sequence |
