Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063267.t1 | PNX82141.1 | 86 | 250 | 35 | 0 | 18 | 267 | 4 | 253 | 2.40E-120 | 441.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063267.t1 | P0DKC5 | 48.9 | 264 | 122 | 3 | 4 | 255 | 48 | 310 | 1.0e-68 | 261.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063267.t1 | A0A2K3LUC7 | 86.0 | 250 | 35 | 0 | 18 | 267 | 4 | 253 | 1.7e-120 | 441.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053074 | MS.gene063267 | 0.831872 | 1.31E-55 | -1.69E-46 |
| MS.gene054184 | MS.gene063267 | 0.803747 | 3.01E-49 | -1.69E-46 |
| MS.gene054185 | MS.gene063267 | 0.801533 | 8.61E-49 | -1.69E-46 |
| MS.gene059124 | MS.gene063267 | 0.835652 | 1.48E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063267.t1 | MTR_8g096580 | 75.714 | 280 | 68 | 0 | 1 | 280 | 45 | 324 | 6.17e-160 | 447 |
| MS.gene063267.t1 | MTR_8g096620 | 50.368 | 272 | 113 | 3 | 1 | 255 | 45 | 311 | 4.14e-88 | 266 |
| MS.gene063267.t1 | MTR_8g096610 | 74.737 | 190 | 30 | 5 | 82 | 266 | 54 | 230 | 1.78e-87 | 260 |
| MS.gene063267.t1 | MTR_5g008850 | 42.105 | 266 | 139 | 4 | 1 | 252 | 45 | 309 | 3.31e-64 | 206 |
| MS.gene063267.t1 | MTR_4g052340 | 33.816 | 207 | 122 | 6 | 4 | 202 | 17 | 216 | 3.25e-22 | 93.6 |
| MS.gene063267.t1 | MTR_4g052350 | 31.683 | 202 | 131 | 4 | 4 | 201 | 17 | 215 | 7.00e-21 | 89.7 |
| MS.gene063267.t1 | MTR_4g052320 | 32.812 | 192 | 118 | 4 | 4 | 190 | 11 | 196 | 4.78e-19 | 84.7 |
| MS.gene063267.t1 | MTR_7g105590 | 31.250 | 192 | 119 | 6 | 4 | 189 | 11 | 195 | 7.98e-19 | 82.4 |
| MS.gene063267.t1 | MTR_4g052300 | 32.812 | 192 | 118 | 4 | 4 | 190 | 11 | 196 | 2.50e-18 | 82.8 |
| MS.gene063267.t1 | MTR_7g071680 | 29.956 | 227 | 143 | 8 | 4 | 219 | 32 | 253 | 8.18e-18 | 82.0 |
| MS.gene063267.t1 | MTR_6g023610 | 29.851 | 201 | 130 | 5 | 1 | 195 | 13 | 208 | 1.14e-17 | 80.9 |
| MS.gene063267.t1 | MTR_7g080410 | 33.684 | 190 | 120 | 5 | 4 | 188 | 41 | 229 | 2.35e-17 | 80.9 |
| MS.gene063267.t1 | MTR_7g080410 | 33.684 | 190 | 120 | 5 | 4 | 188 | 41 | 229 | 2.36e-17 | 80.5 |
| MS.gene063267.t1 | MTR_4g097510 | 30.964 | 197 | 127 | 5 | 3 | 196 | 4 | 194 | 1.46e-16 | 78.2 |
| MS.gene063267.t1 | MTR_6g023910 | 29.353 | 201 | 133 | 6 | 1 | 196 | 13 | 209 | 1.80e-16 | 77.8 |
| MS.gene063267.t1 | MTR_7g107670 | 34.031 | 191 | 112 | 7 | 4 | 188 | 36 | 218 | 2.57e-16 | 77.8 |
| MS.gene063267.t1 | MTR_3g087860 | 34.194 | 155 | 95 | 4 | 53 | 205 | 58 | 207 | 1.91e-15 | 75.1 |
| MS.gene063267.t1 | MTR_4g086410 | 28.643 | 199 | 131 | 3 | 7 | 194 | 10 | 208 | 5.75e-15 | 75.1 |
| MS.gene063267.t1 | MTR_4g086400 | 28.141 | 199 | 132 | 3 | 7 | 194 | 10 | 208 | 1.30e-14 | 73.9 |
| MS.gene063267.t1 | MTR_1g082760 | 29.075 | 227 | 146 | 6 | 4 | 217 | 43 | 267 | 3.55e-14 | 71.6 |
| MS.gene063267.t1 | MTR_7g110140 | 35.204 | 196 | 110 | 8 | 4 | 191 | 9 | 195 | 2.42e-13 | 68.9 |
| MS.gene063267.t1 | MTR_3g085740 | 30.000 | 210 | 135 | 8 | 5 | 207 | 79 | 283 | 3.51e-13 | 68.9 |
| MS.gene063267.t1 | MTR_6g023590 | 27.363 | 201 | 135 | 5 | 1 | 195 | 13 | 208 | 4.46e-13 | 68.2 |
| MS.gene063267.t1 | MTR_7g105580 | 27.568 | 185 | 105 | 5 | 4 | 183 | 11 | 171 | 5.45e-13 | 67.8 |
| MS.gene063267.t1 | MTR_7g113650 | 28.194 | 227 | 148 | 6 | 4 | 217 | 43 | 267 | 8.14e-13 | 67.8 |
| MS.gene063267.t1 | MTR_6g023990 | 25.703 | 249 | 155 | 7 | 1 | 239 | 14 | 242 | 8.46e-13 | 67.4 |
| MS.gene063267.t1 | MTR_7g105460 | 28.095 | 210 | 137 | 6 | 4 | 204 | 16 | 220 | 5.87e-12 | 65.1 |
| MS.gene063267.t1 | MTR_4g078630 | 28.934 | 197 | 128 | 4 | 4 | 194 | 22 | 212 | 7.16e-12 | 64.7 |
| MS.gene063267.t1 | MTR_7g094510 | 29.439 | 214 | 138 | 5 | 4 | 204 | 9 | 222 | 7.39e-12 | 64.3 |
| MS.gene063267.t1 | MTR_4g084800 | 33.871 | 124 | 75 | 3 | 4 | 125 | 16 | 134 | 1.14e-11 | 62.0 |
| MS.gene063267.t1 | MTR_6g088500 | 28.846 | 208 | 127 | 6 | 6 | 193 | 183 | 389 | 1.39e-11 | 64.7 |
| MS.gene063267.t1 | MTR_6g023950 | 27.984 | 243 | 145 | 7 | 1 | 233 | 13 | 235 | 1.40e-11 | 63.5 |
| MS.gene063267.t1 | MTR_1g051165 | 25.366 | 205 | 140 | 7 | 4 | 196 | 17 | 220 | 7.55e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063267.t1 | AT5G50600 | 48.864 | 264 | 122 | 3 | 4 | 255 | 48 | 310 | 1.35e-87 | 265 |
| MS.gene063267.t1 | AT5G50700 | 48.864 | 264 | 122 | 3 | 4 | 255 | 48 | 310 | 1.35e-87 | 265 |
| MS.gene063267.t1 | AT3G47350 | 49.811 | 265 | 128 | 2 | 4 | 266 | 47 | 308 | 2.22e-84 | 255 |
| MS.gene063267.t1 | AT5G50690 | 51.807 | 249 | 111 | 3 | 4 | 247 | 48 | 292 | 1.61e-82 | 250 |
| MS.gene063267.t1 | AT5G50590 | 51.807 | 249 | 111 | 3 | 4 | 247 | 48 | 292 | 1.61e-82 | 250 |
| MS.gene063267.t1 | AT3G47360 | 48.881 | 268 | 132 | 4 | 1 | 266 | 45 | 309 | 1.01e-80 | 246 |
| MS.gene063267.t1 | AT5G50770 | 45.833 | 264 | 130 | 3 | 1 | 252 | 45 | 307 | 2.68e-77 | 238 |
| MS.gene063267.t1 | AT3G47350 | 51.376 | 218 | 101 | 2 | 4 | 219 | 47 | 261 | 7.14e-70 | 219 |
| MS.gene063267.t1 | AT5G50690 | 57.838 | 185 | 77 | 1 | 4 | 188 | 48 | 231 | 1.16e-69 | 216 |
| MS.gene063267.t1 | AT5G50590 | 57.838 | 185 | 77 | 1 | 4 | 188 | 48 | 231 | 1.16e-69 | 216 |
| MS.gene063267.t1 | AT4G10020 | 44.402 | 259 | 134 | 4 | 1 | 250 | 47 | 304 | 4.86e-69 | 219 |
| MS.gene063267.t1 | AT3G47350 | 42.264 | 265 | 104 | 3 | 4 | 266 | 47 | 264 | 2.25e-58 | 187 |
| MS.gene063267.t1 | AT5G10050 | 31.373 | 204 | 126 | 6 | 5 | 205 | 9 | 201 | 3.82e-21 | 90.9 |
| MS.gene063267.t1 | AT1G49670 | 35.204 | 196 | 116 | 4 | 7 | 191 | 10 | 205 | 8.21e-20 | 89.4 |
| MS.gene063267.t1 | AT1G49670 | 35.204 | 196 | 116 | 4 | 7 | 191 | 10 | 205 | 8.54e-20 | 89.4 |
| MS.gene063267.t1 | AT3G03330 | 35.751 | 193 | 113 | 7 | 4 | 188 | 44 | 233 | 5.81e-18 | 82.8 |
| MS.gene063267.t1 | AT3G51680 | 32.487 | 197 | 119 | 6 | 4 | 190 | 35 | 227 | 6.70e-17 | 79.3 |
| MS.gene063267.t1 | AT1G54870 | 29.297 | 256 | 155 | 8 | 4 | 245 | 85 | 328 | 6.78e-15 | 73.9 |
| MS.gene063267.t1 | AT1G54870 | 29.297 | 256 | 155 | 8 | 4 | 245 | 87 | 330 | 7.14e-15 | 73.9 |
| MS.gene063267.t1 | AT1G24360 | 30.622 | 209 | 135 | 7 | 5 | 207 | 78 | 282 | 1.40e-14 | 73.2 |
| MS.gene063267.t1 | AT3G26770 | 29.442 | 197 | 130 | 6 | 4 | 196 | 44 | 235 | 3.71e-14 | 71.6 |
| MS.gene063267.t1 | AT3G05260 | 30.049 | 203 | 132 | 5 | 4 | 199 | 40 | 239 | 1.77e-13 | 69.7 |
| MS.gene063267.t1 | AT3G55310 | 26.733 | 202 | 140 | 5 | 4 | 198 | 20 | 220 | 3.42e-13 | 68.6 |
| MS.gene063267.t1 | AT1G52340 | 30.198 | 202 | 130 | 6 | 4 | 198 | 21 | 218 | 3.83e-13 | 68.6 |
| MS.gene063267.t1 | AT3G26760 | 31.188 | 202 | 122 | 7 | 4 | 197 | 39 | 231 | 1.35e-12 | 67.0 |
| MS.gene063267.t1 | AT3G04000 | 27.830 | 212 | 138 | 6 | 1 | 198 | 14 | 224 | 2.59e-11 | 63.2 |
| MS.gene063267.t1 | AT2G47120 | 28.505 | 214 | 117 | 8 | 4 | 197 | 9 | 206 | 4.05e-11 | 62.4 |
| MS.gene063267.t1 | AT2G47120 | 28.505 | 214 | 117 | 8 | 4 | 197 | 10 | 207 | 4.08e-11 | 62.4 |
| MS.gene063267.t1 | AT1G10310 | 27.854 | 219 | 154 | 3 | 1 | 218 | 15 | 230 | 5.56e-11 | 61.6 |
| MS.gene063267.t1 | AT1G63380 | 25.616 | 203 | 142 | 7 | 4 | 198 | 18 | 219 | 6.19e-11 | 62.0 |
| MS.gene063267.t1 | AT1G63380 | 25.616 | 203 | 142 | 7 | 4 | 198 | 25 | 226 | 6.46e-11 | 62.0 |
| MS.gene063267.t1 | AT1G63380 | 25.616 | 203 | 142 | 7 | 4 | 198 | 20 | 221 | 6.98e-11 | 62.0 |
| MS.gene063267.t1 | AT1G63380 | 25.616 | 203 | 142 | 7 | 4 | 198 | 22 | 223 | 7.21e-11 | 62.0 |
| MS.gene063267.t1 | AT3G55290 | 24.752 | 202 | 144 | 5 | 4 | 198 | 21 | 221 | 9.85e-11 | 61.6 |
| MS.gene063267.t1 | AT3G55290 | 24.752 | 202 | 144 | 5 | 4 | 198 | 20 | 220 | 9.97e-11 | 61.6 |
Find 77 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAATAATGCTGGAATTAT+TGG | 0.187644 | 4.2:+7075011 | MS.gene063267:CDS |
| TCCCCTGATGTTATCATTAT+TGG | 0.195093 | 4.2:+7074829 | MS.gene063267:CDS |
| GTCTAAATACACACAAATTA+TGG | 0.246179 | 4.2:+7075067 | MS.gene063267:CDS |
| GTCACTTGTTGACATTAAAA+TGG | 0.249790 | 4.2:+7074765 | MS.gene063267:CDS |
| TAAATAATGCTGGAATTATT+GGG | 0.259768 | 4.2:+7075012 | MS.gene063267:CDS |
| CTAATCACTGGAGCAGCTTC+TGG | 0.259839 | 4.2:+7074334 | MS.gene063267:CDS |
| ATTGAACTTGGTTGGTCTAT+TGG | 0.282291 | 4.2:+7075877 | MS.gene063267:CDS |
| TTTCTCAGGAAACAAACTTC+TGG | 0.287027 | 4.2:+7075557 | MS.gene063267:intron |
| TCAAAACAGACCTGGCATTC+AGG | 0.295225 | 4.2:+7075926 | MS.gene063267:CDS |
| TGGACCCAACGACACATCTT+TGG | 0.322629 | 4.2:+7076114 | MS.gene063267:CDS |
| ACTGGAGCAGCTTCTGGAAT+TGG | 0.358733 | 4.2:+7074340 | MS.gene063267:CDS |
| TTCTCAGGAAACAAACTTCT+GGG | 0.368129 | 4.2:+7075558 | MS.gene063267:intron |
| TCTAGTAGCAGTGGCTGATA+TGG | 0.371464 | 4.2:+7074792 | MS.gene063267:CDS |
| GGACCCAACGACACATCTTT+GGG | 0.376556 | 4.2:+7076115 | MS.gene063267:CDS |
| CATTGAAGATGAGGCTACTC+TGG | 0.388998 | 4.2:+7075951 | MS.gene063267:CDS |
| CAAGAGTTACCAAGAGCTTA+AGG | 0.391355 | 4.2:+7076182 | MS.gene063267:CDS |
| GTTTCATGCAGTGGATCATC+TGG | 0.391549 | 4.2:+7074989 | MS.gene063267:intron |
| TTTATTCTACCTTAAGCTCT+TGG | 0.393929 | 4.2:-7076191 | None:intergenic |
| CTTAAGCTCTTGGTAACTCT+TGG | 0.396197 | 4.2:-7076181 | None:intergenic |
| TAAGCAGATTATCATTCTTC+CGG | 0.400439 | 4.2:-7076155 | None:intergenic |
| TAGATACTGAGTCTCGGAAT+TGG | 0.408361 | 4.2:-7075670 | None:intergenic |
| TGTATGTGACAAACCCTTCA+TGG | 0.413786 | 4.2:+7076043 | MS.gene063267:CDS |
| TGCACCTTTCACTATGTCCT+TGG | 0.421028 | 4.2:-7076007 | None:intergenic |
| GCACCAATAATGATAACATC+AGG | 0.433269 | 4.2:-7074832 | None:intergenic |
| GCTGATATGGCAAGGTCTCT+TGG | 0.434769 | 4.2:+7074805 | MS.gene063267:CDS |
| TTTATCCCCACCTGGTGGAC+TGG | 0.435024 | 4.2:+7076094 | MS.gene063267:CDS |
| AATATTACTTTGACCCATGA+AGG | 0.435612 | 4.2:-7076057 | None:intergenic |
| CCGCTTACTGTCTTCAACCT+TGG | 0.441439 | 4.2:-7074863 | None:intergenic |
| AATGATATATCAGGCTAGTA+AGG | 0.453299 | 4.2:+7075822 | MS.gene063267:intron |
| CAAAACAGACCTGGCATTCA+GGG | 0.453872 | 4.2:+7075927 | MS.gene063267:CDS |
| CTTCAATGACCCTGAATGCC+AGG | 0.457896 | 4.2:-7075936 | None:intergenic |
| AGATTATCATTCTTCCGGTA+AGG | 0.458492 | 4.2:-7076150 | None:intergenic |
| GATCATCTGGTAAATAATGC+TGG | 0.468710 | 4.2:+7075002 | MS.gene063267:CDS |
| AGAAAAGTTGTACTAATCAC+TGG | 0.477822 | 4.2:+7074322 | MS.gene063267:CDS |
| CTTTAAGAATTGAACTTGGT+TGG | 0.480366 | 4.2:+7075869 | MS.gene063267:CDS |
| TACTCTGGGAAGACTTCCAT+TGG | 0.485275 | 4.2:+7075966 | MS.gene063267:CDS |
| GGCATAACAATTGCCACACC+TGG | 0.489859 | 4.2:+7075898 | MS.gene063267:CDS |
| TGGGGTTCCAAGGTTGGTAG+AGG | 0.491125 | 4.2:+7075031 | MS.gene063267:CDS |
| ACATAGTGAAAGGTGCATGC+AGG | 0.491624 | 4.2:+7076013 | MS.gene063267:CDS |
| GATTATCATTCTTCCGGTAA+GGG | 0.496088 | 4.2:-7076149 | None:intergenic |
| CTGGAATTATTGGGGTTCCA+AGG | 0.514905 | 4.2:+7075021 | MS.gene063267:CDS |
| ACTCTGGGAAGACTTCCATT+GGG | 0.519855 | 4.2:+7075967 | MS.gene063267:CDS |
| AATCCCAAAGATGTGTCGTT+GGG | 0.526397 | 4.2:-7076118 | None:intergenic |
| CATAGTGAAAGGTGCATGCA+GGG | 0.526660 | 4.2:+7076014 | MS.gene063267:CDS |
| ATAGTCGTTGCTTCAGCTTG+TGG | 0.530720 | 4.2:+7075640 | MS.gene063267:CDS |
| TCGTTGCTTCAGCTTGTGGA+TGG | 0.531934 | 4.2:+7075644 | MS.gene063267:CDS |
| GTCGTTGGGTCCAGTCCACC+AGG | 0.532099 | 4.2:-7076104 | None:intergenic |
| TTGGGTCCAGTCCACCAGGT+GGG | 0.538985 | 4.2:-7076100 | None:intergenic |
| GAGACTTTAAGAATTGAACT+TGG | 0.549331 | 4.2:+7075865 | MS.gene063267:CDS |
| AAATCCCAAAGATGTGTCGT+TGG | 0.552388 | 4.2:-7076119 | None:intergenic |
| AATTATTGGGGTTCCAAGGT+TGG | 0.558074 | 4.2:+7075025 | MS.gene063267:CDS |
| AAATAATGCTGGAATTATTG+GGG | 0.573354 | 4.2:+7075013 | MS.gene063267:CDS |
| GAAGGTGCTTTATCCCCACC+TGG | 0.576932 | 4.2:+7076086 | MS.gene063267:CDS |
| GTATGTGACAAACCCTTCAT+GGG | 0.577043 | 4.2:+7076044 | MS.gene063267:CDS |
| CACCAATAATGATAACATCA+GGG | 0.577672 | 4.2:-7074831 | None:intergenic |
| ATATTACTTTGACCCATGAA+GGG | 0.580640 | 4.2:-7076056 | None:intergenic |
| AACTTCTGGGGAGCAGCTCG+TGG | 0.582009 | 4.2:+7075571 | MS.gene063267:CDS |
| ATTGAAGATGAGGCTACTCT+GGG | 0.592222 | 4.2:+7075952 | MS.gene063267:CDS |
| ACGTTATAGATACTGAGTCT+CGG | 0.601954 | 4.2:-7075676 | None:intergenic |
| ATTCAGGGTCATTGAAGATG+AGG | 0.603172 | 4.2:+7075942 | MS.gene063267:CDS |
| AATGGAGAATCTAGTAGCAG+TGG | 0.606093 | 4.2:+7074783 | MS.gene063267:CDS |
| TCTCAGGAAACAAACTTCTG+GGG | 0.608091 | 4.2:+7075559 | MS.gene063267:intron |
| TGGGTCCAGTCCACCAGGTG+GGG | 0.616076 | 4.2:-7076099 | None:intergenic |
| TTCATCAGTTGAATGTGCCA+AGG | 0.618817 | 4.2:+7075990 | MS.gene063267:CDS |
| AGCAGCTTCTGGAATTGGCG+AGG | 0.622046 | 4.2:+7074345 | MS.gene063267:CDS |
| GTCACGCACATCGTTCAAAG+TGG | 0.625407 | 4.2:-7074906 | None:intergenic |
| GGTGCTTTATCCCCACCTGG+TGG | 0.631992 | 4.2:+7076089 | MS.gene063267:CDS |
| TAGCAGTGGCTGATATGGCA+AGG | 0.633184 | 4.2:+7074797 | MS.gene063267:CDS |
| CCAAGGTTGAAGACAGTAAG+CGG | 0.640572 | 4.2:+7074863 | MS.gene063267:CDS |
| CATTCAACTGATGAACCCAA+TGG | 0.642419 | 4.2:-7075982 | None:intergenic |
| GTTGGGTCCAGTCCACCAGG+TGG | 0.645605 | 4.2:-7076101 | None:intergenic |
| ACCAATAATGATAACATCAG+GGG | 0.676766 | 4.2:-7074830 | None:intergenic |
| ATAGTGAAAGGTGCATGCAG+GGG | 0.678255 | 4.2:+7076015 | MS.gene063267:CDS |
| AGTATGCTAGACGAGGAGCA+AGG | 0.694009 | 4.2:+7074740 | MS.gene063267:CDS |
| TGTGCCAAGGACATAGTGAA+AGG | 0.715969 | 4.2:+7076003 | MS.gene063267:CDS |
| GCTTATGAGTATGCTAGACG+AGG | 0.721771 | 4.2:+7074733 | MS.gene063267:CDS |
| TATTGGTGCAGATGTGACCA+AGG | 0.724737 | 4.2:+7074846 | MS.gene063267:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAAAATTATATGAT+GGG | + | chr4.2:7074958-7074977 | MS.gene063267:intron | 10.0% |
| !! | ATAAATAAATTAACAAAGAA+AGG | - | chr4.2:7074698-7074717 | None:intergenic | 10.0% |
| !! | GAACAAAAAAAATTATATGA+TGG | + | chr4.2:7074957-7074976 | MS.gene063267:intron | 15.0% |
| !! | TATGAAAAATCTAATTGATA+TGG | + | chr4.2:7074498-7074517 | MS.gene063267:intron | 15.0% |
| !! | TTATTAACAAATAACAATGT+TGG | + | chr4.2:7075171-7075190 | MS.gene063267:intron | 15.0% |
| !!! | TGGAACTTTATTTAAAATTA+TGG | + | chr4.2:7075344-7075363 | MS.gene063267:intron | 15.0% |
| !!! | TGTACTATAAAGTTTTTTAT+TGG | - | chr4.2:7074547-7074566 | None:intergenic | 15.0% |
| !! | ATGTTGTAAAGAAACAAAAA+CGG | + | chr4.2:7075446-7075465 | MS.gene063267:intron | 20.0% |
| !! | GAGTATAATTTACATATACA+TGG | + | chr4.2:7075289-7075308 | MS.gene063267:intron | 20.0% |
| !! | GCTCTTAATTATTATTATCA+TGG | + | chr4.2:7075483-7075502 | MS.gene063267:intron | 20.0% |
| !! | TAAATAATGCTGGAATTATT+GGG | + | chr4.2:7075012-7075031 | MS.gene063267:CDS | 20.0% |
| !!! | ATAATAATAATTAAGAGCAC+CGG | - | chr4.2:7075481-7075500 | None:intergenic | 20.0% |
| !!! | CAAAGTAATATTTTATTGGA+AGG | + | chr4.2:7076068-7076087 | MS.gene063267:CDS | 20.0% |
| !!! | CTTTACTATTTTTAAGATGT+GGG | - | chr4.2:7075612-7075631 | None:intergenic | 20.0% |
| !!! | TTTGAGTTAATTTTGACTTA+TGG | - | chr4.2:7074450-7074469 | None:intergenic | 20.0% |
| !!! | TTTGCTCTATTATTTTGTTT+TGG | + | chr4.2:7074377-7074396 | MS.gene063267:intron | 20.0% |
| ! | AAATAATGCTGGAATTATTG+GGG | + | chr4.2:7075013-7075032 | MS.gene063267:CDS | 25.0% |
| ! | AATCTATATATGTGATGTTG+TGG | - | chr4.2:7075748-7075767 | None:intergenic | 25.0% |
| ! | ACACACATATATATAGATGA+TGG | + | chr4.2:7075778-7075797 | MS.gene063267:intron | 25.0% |
| ! | ACCTATTCTTGCAAATATTA+TGG | + | chr4.2:7075417-7075436 | MS.gene063267:intron | 25.0% |
| ! | ATCTTAAAAATAGTAAAGGC+AGG | + | chr4.2:7075614-7075633 | MS.gene063267:CDS | 25.0% |
| ! | CAAAAGTGGTTTCATATTAA+AGG | + | chr4.2:7075515-7075534 | MS.gene063267:intron | 25.0% |
| ! | CCACATCTTAAAAATAGTAA+AGG | + | chr4.2:7075610-7075629 | MS.gene063267:CDS | 25.0% |
| ! | CCTATTCTTGCAAATATTAT+GGG | + | chr4.2:7075418-7075437 | MS.gene063267:intron | 25.0% |
| ! | GTAAATAATGCTGGAATTAT+TGG | + | chr4.2:7075011-7075030 | MS.gene063267:CDS | 25.0% |
| ! | GTCTAAATACACACAAATTA+TGG | + | chr4.2:7075067-7075086 | MS.gene063267:CDS | 25.0% |
| ! | TGATACTCATGAAAAAAATG+TGG | + | chr4.2:7074411-7074430 | MS.gene063267:intron | 25.0% |
| !! | GGGTCAAAGTAATATTTTAT+TGG | + | chr4.2:7076064-7076083 | MS.gene063267:CDS | 25.0% |
| !! | TTTATGTGTGTATTTTTCTC+AGG | + | chr4.2:7075543-7075562 | MS.gene063267:intron | 25.0% |
| !!! | AGAAAGGTTTTATTAGCAAA+TGG | - | chr4.2:7074682-7074701 | None:intergenic | 25.0% |
| !!! | CCTTTACTATTTTTAAGATG+TGG | - | chr4.2:7075613-7075632 | None:intergenic | 25.0% |
| !!! | GATTTGTTGAATGATATATC+AGG | + | chr4.2:7075813-7075832 | MS.gene063267:intron | 25.0% |
| AATATTACTTTGACCCATGA+AGG | - | chr4.2:7076060-7076079 | None:intergenic | 30.0% | |
| AATGATATATCAGGCTAGTA+AGG | + | chr4.2:7075822-7075841 | MS.gene063267:intron | 30.0% | |
| ACCAATAATGATAACATCAG+GGG | - | chr4.2:7074833-7074852 | None:intergenic | 30.0% | |
| AGAAAAGTTGTACTAATCAC+TGG | + | chr4.2:7074322-7074341 | MS.gene063267:CDS | 30.0% | |
| ATATTACTTTGACCCATGAA+GGG | - | chr4.2:7076059-7076078 | None:intergenic | 30.0% | |
| CACCAATAATGATAACATCA+GGG | - | chr4.2:7074834-7074853 | None:intergenic | 30.0% | |
| CCCATAATATTTGCAAGAAT+AGG | - | chr4.2:7075421-7075440 | None:intergenic | 30.0% | |
| TAAGCAGATTATCATTCTTC+CGG | - | chr4.2:7076158-7076177 | None:intergenic | 30.0% | |
| ! | CTTTAAGAATTGAACTTGGT+TGG | + | chr4.2:7075869-7075888 | MS.gene063267:CDS | 30.0% |
| ! | GAGACTTTAAGAATTGAACT+TGG | + | chr4.2:7075865-7075884 | MS.gene063267:CDS | 30.0% |
| ! | GTCACTTGTTGACATTAAAA+TGG | + | chr4.2:7074765-7074784 | MS.gene063267:CDS | 30.0% |
| !! | TTACCTCTGAAATTGTAAGA+TGG | + | chr4.2:7075324-7075343 | MS.gene063267:intron | 30.0% |
| ACGTTATAGATACTGAGTCT+CGG | - | chr4.2:7075679-7075698 | None:intergenic | 35.0% | |
| AGATTATCATTCTTCCGGTA+AGG | - | chr4.2:7076153-7076172 | None:intergenic | 35.0% | |
| GATCATCTGGTAAATAATGC+TGG | + | chr4.2:7075002-7075021 | MS.gene063267:CDS | 35.0% | |
| GATTATCATTCTTCCGGTAA+GGG | - | chr4.2:7076152-7076171 | None:intergenic | 35.0% | |
| GCACCAATAATGATAACATC+AGG | - | chr4.2:7074835-7074854 | None:intergenic | 35.0% | |
| GTTCCATCTTACAATTTCAG+AGG | - | chr4.2:7075330-7075349 | None:intergenic | 35.0% | |
| TCCCCTGATGTTATCATTAT+TGG | + | chr4.2:7074829-7074848 | MS.gene063267:CDS | 35.0% | |
| TTCTCAGGAAACAAACTTCT+GGG | + | chr4.2:7075558-7075577 | MS.gene063267:intron | 35.0% | |
| TTTCTCAGGAAACAAACTTC+TGG | + | chr4.2:7075557-7075576 | MS.gene063267:intron | 35.0% | |
| !! | ATTGAACTTGGTTGGTCTAT+TGG | + | chr4.2:7075877-7075896 | MS.gene063267:CDS | 35.0% |
| !! | GTACTTTTTGTTTCATGCAG+TGG | + | chr4.2:7074980-7074999 | MS.gene063267:intron | 35.0% |
| !! | GTTTTATTAGCAAATGGCAG+TGG | - | chr4.2:7074676-7074695 | None:intergenic | 35.0% |
| !!! | AAGGTTGGTAGAGGATTTTT+CGG | + | chr4.2:7075040-7075059 | MS.gene063267:CDS | 35.0% |
| !!! | AGGTCTGTTTTGATAAAACC+AGG | - | chr4.2:7075919-7075938 | None:intergenic | 35.0% |
| !!! | TGGTTTTATCAAAACAGACC+TGG | + | chr4.2:7075918-7075937 | MS.gene063267:CDS | 35.0% |
| !!! | TGTTTTGATAAAACCAGGTG+TGG | - | chr4.2:7075914-7075933 | None:intergenic | 35.0% |
| AAATCCCAAAGATGTGTCGT+TGG | - | chr4.2:7076122-7076141 | None:intergenic | 40.0% | |
| AATGGAGAATCTAGTAGCAG+TGG | + | chr4.2:7074783-7074802 | MS.gene063267:CDS | 40.0% | |
| AATTATTGGGGTTCCAAGGT+TGG | + | chr4.2:7075025-7075044 | MS.gene063267:CDS | 40.0% | |
| ACAAAAACGGTCATGCTAAC+CGG | + | chr4.2:7075459-7075478 | MS.gene063267:intron | 40.0% | |
| ATTCAGGGTCATTGAAGATG+AGG | + | chr4.2:7075942-7075961 | MS.gene063267:CDS | 40.0% | |
| ATTGAAGATGAGGCTACTCT+GGG | + | chr4.2:7075952-7075971 | MS.gene063267:CDS | 40.0% | |
| CAAGAGTTACCAAGAGCTTA+AGG | + | chr4.2:7076182-7076201 | MS.gene063267:CDS | 40.0% | |
| CATTCAACTGATGAACCCAA+TGG | - | chr4.2:7075985-7076004 | None:intergenic | 40.0% | |
| GAAAAATCCTCTACCAACCT+TGG | - | chr4.2:7075041-7075060 | None:intergenic | 40.0% | |
| GTATGTGACAAACCCTTCAT+GGG | + | chr4.2:7076044-7076063 | MS.gene063267:CDS | 40.0% | |
| TAGATACTGAGTCTCGGAAT+TGG | - | chr4.2:7075673-7075692 | None:intergenic | 40.0% | |
| TCTCAGGAAACAAACTTCTG+GGG | + | chr4.2:7075559-7075578 | MS.gene063267:intron | 40.0% | |
| TGTATGTGACAAACCCTTCA+TGG | + | chr4.2:7076043-7076062 | MS.gene063267:CDS | 40.0% | |
| TTCATCAGTTGAATGTGCCA+AGG | + | chr4.2:7075990-7076009 | MS.gene063267:CDS | 40.0% | |
| ! | AATCCCAAAGATGTGTCGTT+GGG | - | chr4.2:7076121-7076140 | None:intergenic | 40.0% |
| ! | CTTAAGCTCTTGGTAACTCT+TGG | - | chr4.2:7076184-7076203 | None:intergenic | 40.0% |
| !! | GGATTTTGACAAACCCTTAC+CGG | + | chr4.2:7076136-7076155 | MS.gene063267:CDS | 40.0% |
| ATAGTCGTTGCTTCAGCTTG+TGG | + | chr4.2:7075640-7075659 | MS.gene063267:CDS | 45.0% | |
| CAAAACAGACCTGGCATTCA+GGG | + | chr4.2:7075927-7075946 | MS.gene063267:CDS | 45.0% | |
| CATGGTCGTTGTTGCAAAAG+TGG | + | chr4.2:7075501-7075520 | MS.gene063267:intron | 45.0% | |
| CATTGAAGATGAGGCTACTC+TGG | + | chr4.2:7075951-7075970 | MS.gene063267:CDS | 45.0% | |
| CCAAGGTTGAAGACAGTAAG+CGG | + | chr4.2:7074863-7074882 | MS.gene063267:CDS | 45.0% | |
| CTGGAATTATTGGGGTTCCA+AGG | + | chr4.2:7075021-7075040 | MS.gene063267:CDS | 45.0% | |
| GCTTATGAGTATGCTAGACG+AGG | + | chr4.2:7074733-7074752 | MS.gene063267:CDS | 45.0% | |
| GTTTCATGCAGTGGATCATC+TGG | + | chr4.2:7074989-7075008 | MS.gene063267:intron | 45.0% | |
| TATTGGTGCAGATGTGACCA+AGG | + | chr4.2:7074846-7074865 | MS.gene063267:CDS | 45.0% | |
| TCAAAACAGACCTGGCATTC+AGG | + | chr4.2:7075926-7075945 | MS.gene063267:CDS | 45.0% | |
| TCTAGTAGCAGTGGCTGATA+TGG | + | chr4.2:7074792-7074811 | MS.gene063267:CDS | 45.0% | |
| TGCACCTTTCACTATGTCCT+TGG | - | chr4.2:7076010-7076029 | None:intergenic | 45.0% | |
| TGTGCCAAGGACATAGTGAA+AGG | + | chr4.2:7076003-7076022 | MS.gene063267:CDS | 45.0% | |
| ! | ACATAGTGAAAGGTGCATGC+AGG | + | chr4.2:7076013-7076032 | MS.gene063267:CDS | 45.0% |
| ! | ACTCTGGGAAGACTTCCATT+GGG | + | chr4.2:7075967-7075986 | MS.gene063267:CDS | 45.0% |
| ! | ATAGTGAAAGGTGCATGCAG+GGG | + | chr4.2:7076015-7076034 | MS.gene063267:CDS | 45.0% |
| ! | CATAGTGAAAGGTGCATGCA+GGG | + | chr4.2:7076014-7076033 | MS.gene063267:CDS | 45.0% |
| ! | TACTCTGGGAAGACTTCCAT+TGG | + | chr4.2:7075966-7075985 | MS.gene063267:CDS | 45.0% |
| AGTATGCTAGACGAGGAGCA+AGG | + | chr4.2:7074740-7074759 | MS.gene063267:CDS | 50.0% | |
| CCGCTTACTGTCTTCAACCT+TGG | - | chr4.2:7074866-7074885 | None:intergenic | 50.0% | |
| CTAATCACTGGAGCAGCTTC+TGG | + | chr4.2:7074334-7074353 | MS.gene063267:CDS | 50.0% | |
| CTTCAATGACCCTGAATGCC+AGG | - | chr4.2:7075939-7075958 | None:intergenic | 50.0% | |
| GCTGATATGGCAAGGTCTCT+TGG | + | chr4.2:7074805-7074824 | MS.gene063267:CDS | 50.0% | |
| GGACCCAACGACACATCTTT+GGG | + | chr4.2:7076115-7076134 | MS.gene063267:CDS | 50.0% | |
| GGCATAACAATTGCCACACC+TGG | + | chr4.2:7075898-7075917 | MS.gene063267:CDS | 50.0% | |
| GTCACGCACATCGTTCAAAG+TGG | - | chr4.2:7074909-7074928 | None:intergenic | 50.0% | |
| TAGCAGTGGCTGATATGGCA+AGG | + | chr4.2:7074797-7074816 | MS.gene063267:CDS | 50.0% | |
| TCGTTGCTTCAGCTTGTGGA+TGG | + | chr4.2:7075644-7075663 | MS.gene063267:CDS | 50.0% | |
| TGGACCCAACGACACATCTT+TGG | + | chr4.2:7076114-7076133 | MS.gene063267:CDS | 50.0% | |
| !! | ACTGGAGCAGCTTCTGGAAT+TGG | + | chr4.2:7074340-7074359 | MS.gene063267:CDS | 50.0% |
| ! | TTTATCCCCACCTGGTGGAC+TGG | + | chr4.2:7076094-7076113 | MS.gene063267:CDS | 55.0% |
| !! | AGCAGCTTCTGGAATTGGCG+AGG | + | chr4.2:7074345-7074364 | MS.gene063267:CDS | 55.0% |
| !! | GAAGGTGCTTTATCCCCACC+TGG | + | chr4.2:7076086-7076105 | MS.gene063267:CDS | 55.0% |
| !! | TGGGGTTCCAAGGTTGGTAG+AGG | + | chr4.2:7075031-7075050 | MS.gene063267:CDS | 55.0% |
| GGTGCTTTATCCCCACCTGG+TGG | + | chr4.2:7076089-7076108 | MS.gene063267:CDS | 60.0% | |
| TTGGGTCCAGTCCACCAGGT+GGG | - | chr4.2:7076103-7076122 | None:intergenic | 60.0% | |
| ! | AACTTCTGGGGAGCAGCTCG+TGG | + | chr4.2:7075571-7075590 | MS.gene063267:CDS | 60.0% |
| GTCGTTGGGTCCAGTCCACC+AGG | - | chr4.2:7076107-7076126 | None:intergenic | 65.0% | |
| GTTGGGTCCAGTCCACCAGG+TGG | - | chr4.2:7076104-7076123 | None:intergenic | 65.0% | |
| TGGGTCCAGTCCACCAGGTG+GGG | - | chr4.2:7076102-7076121 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 7074316 | 7076212 | 7074316 | ID=MS.gene063267 |
| chr4.2 | mRNA | 7074316 | 7076212 | 7074316 | ID=MS.gene063267.t1;Parent=MS.gene063267 |
| chr4.2 | exon | 7074316 | 7074366 | 7074316 | ID=MS.gene063267.t1.exon1;Parent=MS.gene063267.t1 |
| chr4.2 | CDS | 7074316 | 7074366 | 7074316 | ID=cds.MS.gene063267.t1;Parent=MS.gene063267.t1 |
| chr4.2 | exon | 7074727 | 7074919 | 7074727 | ID=MS.gene063267.t1.exon2;Parent=MS.gene063267.t1 |
| chr4.2 | CDS | 7074727 | 7074919 | 7074727 | ID=cds.MS.gene063267.t1;Parent=MS.gene063267.t1 |
| chr4.2 | exon | 7075000 | 7075088 | 7075000 | ID=MS.gene063267.t1.exon3;Parent=MS.gene063267.t1 |
| chr4.2 | CDS | 7075000 | 7075088 | 7075000 | ID=cds.MS.gene063267.t1;Parent=MS.gene063267.t1 |
| chr4.2 | exon | 7075565 | 7075696 | 7075565 | ID=MS.gene063267.t1.exon4;Parent=MS.gene063267.t1 |
| chr4.2 | CDS | 7075565 | 7075696 | 7075565 | ID=cds.MS.gene063267.t1;Parent=MS.gene063267.t1 |
| chr4.2 | exon | 7075835 | 7076212 | 7075835 | ID=MS.gene063267.t1.exon5;Parent=MS.gene063267.t1 |
| chr4.2 | CDS | 7075835 | 7076212 | 7075835 | ID=cds.MS.gene063267.t1;Parent=MS.gene063267.t1 |
| Gene Sequence |
| Protein sequence |
