Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063292.t1 | XP_003589150.1 | 95.5 | 352 | 14 | 2 | 1 | 350 | 95 | 446 | 7.10E-191 | 676.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063292.t1 | Q4WRW0 | 28.3 | 159 | 96 | 5 | 146 | 298 | 234 | 380 | 3.2e-06 | 54.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063292.t1 | G7I2D2 | 95.5 | 352 | 14 | 2 | 1 | 350 | 95 | 446 | 5.1e-191 | 676.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051422 | MS.gene063292 | 0.822355 | 2.48E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene063292 | 0.808739 | 2.67E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene063292 | 0.805604 | 1.23E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene063292 | 0.817913 | 2.58E-52 | -1.69E-46 |
| MS.gene059953 | MS.gene063292 | 0.804271 | 2.34E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene063292 | 0.80406 | 2.59E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063292.t1 | MTR_1g019040 | 94.602 | 352 | 17 | 2 | 1 | 350 | 95 | 446 | 0.0 | 649 |
| MS.gene063292.t1 | MTR_3g102120 | 66.197 | 355 | 103 | 7 | 9 | 348 | 117 | 469 | 9.95e-158 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063292.t1 | AT4G06536 | 52.071 | 169 | 63 | 3 | 184 | 342 | 3 | 163 | 3.13e-53 | 173 |
| MS.gene063292.t1 | AT4G06534 | 42.347 | 196 | 81 | 10 | 4 | 187 | 128 | 303 | 1.20e-25 | 106 |
Find 77 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTATATTGTATTCTTCT+TGG | 0.197085 | 1.4:+4089301 | MS.gene063292:CDS |
| GGCTGCAAATATAGACATTA+TGG | 0.216280 | 1.4:+4089958 | MS.gene063292:CDS |
| CAAGTGTTGCTTCTGTTATT+AGG | 0.239162 | 1.4:+4089211 | MS.gene063292:CDS |
| AAATATAGACATTATGGTTT+TGG | 0.262776 | 1.4:+4089964 | MS.gene063292:CDS |
| TAAGTTCCTGGAACTCTTAA+AGG | 0.284979 | 1.4:-4089498 | None:intergenic |
| GAGTTGAACCCTATGCTTCT+AGG | 0.294865 | 1.4:-4089522 | None:intergenic |
| ACCTCCACATGATCCTAAAA+AGG | 0.312462 | 1.4:-4089055 | None:intergenic |
| AGGACTTCTCTGCCTCTTCC+TGG | 0.330949 | 1.4:+4089231 | MS.gene063292:CDS |
| GGTGTTCTTTGTGCATTTGC+AGG | 0.344174 | 1.4:-4090019 | None:intergenic |
| AATGGTTCTGTGTTTCTTGA+TGG | 0.346638 | 1.4:+4089546 | MS.gene063292:CDS |
| CTTCACATTAAACTCAGAAT+TGG | 0.364848 | 1.4:+4089880 | MS.gene063292:CDS |
| GGTGTTCCTTTAAGAGTTCC+AGG | 0.371181 | 1.4:+4089492 | MS.gene063292:CDS |
| CATTCCCCTGGTGCTGCACT+TGG | 0.393098 | 1.4:+4090070 | MS.gene063292:CDS |
| TGTGGAGGTAGTGATGAATT+TGG | 0.393678 | 1.4:+4089069 | MS.gene063292:CDS |
| ATGTTGTCATTAGGATTAAC+AGG | 0.397970 | 1.4:+4089462 | MS.gene063292:CDS |
| AGTTGGTAGGAAGAAGAGAA+GGG | 0.406253 | 1.4:+4089337 | MS.gene063292:CDS |
| TTGGTTGTGGATTTGATCCT+AGG | 0.407304 | 1.4:+4089843 | MS.gene063292:CDS |
| GAAATGAAAGTTGAAGGAAA+AGG | 0.425592 | 1.4:+4089423 | MS.gene063292:CDS |
| GTTGAAGAAATGAAAGTTGA+AGG | 0.430549 | 1.4:+4089417 | MS.gene063292:CDS |
| ATGCTTCTAGGGTAAGTTCC+TGG | 0.431690 | 1.4:-4089510 | None:intergenic |
| ATACTCAGTGTCCTTATCAT+AGG | 0.434137 | 1.4:+4090267 | MS.gene063292:CDS |
| ACAAAAGGAAATAACATCAA+TGG | 0.438406 | 1.4:+4090160 | MS.gene063292:CDS |
| TCTATATTTGCAGCCAAAGT+TGG | 0.444908 | 1.4:-4089950 | None:intergenic |
| AAATGAAAGTTGAAGGAAAA+GGG | 0.445757 | 1.4:+4089424 | MS.gene063292:CDS |
| ACACTTGTAGAACTGTTGTT+TGG | 0.449080 | 1.4:-4089195 | None:intergenic |
| GAGTTGGTAGGAAGAAGAGA+AGG | 0.458063 | 1.4:+4089336 | MS.gene063292:CDS |
| TATGATAAGGACACTGAGTA+TGG | 0.460716 | 1.4:-4090265 | None:intergenic |
| CAAAAGGAAATAACATCAAT+GGG | 0.463014 | 1.4:+4090161 | MS.gene063292:CDS |
| GAAGATATTTCAAATGATGA+AGG | 0.474237 | 1.4:+4089381 | MS.gene063292:CDS |
| ATATTGTATTCTTCTTGGAA+TGG | 0.474728 | 1.4:+4089306 | MS.gene063292:CDS |
| GAATCTGTGATGTTGTCATT+AGG | 0.478583 | 1.4:+4089453 | MS.gene063292:CDS |
| AAAATGCGGCTGAAATAAGC+TGG | 0.480947 | 1.4:+4089097 | MS.gene063292:CDS |
| ACTGATACAGTAATTGGTTG+TGG | 0.482195 | 1.4:+4089830 | MS.gene063292:CDS |
| TCATTAGGATTAACAGGTGG+AGG | 0.490348 | 1.4:+4089468 | MS.gene063292:CDS |
| GGTGCTATGAAGCATGGATT+TGG | 0.494107 | 1.4:-4090040 | None:intergenic |
| CAGAATCGATCGGCAACAAA+AGG | 0.495388 | 1.4:+4090145 | MS.gene063292:CDS |
| GTGGGAACTGATACAGTAAT+TGG | 0.504282 | 1.4:+4089824 | MS.gene063292:CDS |
| ATCAAGAAACACAGAACCAT+TGG | 0.508071 | 1.4:-4089544 | None:intergenic |
| ATTTCAAAATAAGCTTCTTG+TGG | 0.514560 | 1.4:-4089279 | None:intergenic |
| AATGGAGATTATGAGTTGGT+AGG | 0.514637 | 1.4:+4089324 | MS.gene063292:CDS |
| TCAAATCCAAGTGCAGCACC+AGG | 0.515251 | 1.4:-4090076 | None:intergenic |
| CACTCCACTATGTCCAACTT+TGG | 0.516191 | 1.4:+4089937 | MS.gene063292:CDS |
| AGTTGAACCCTATGCTTCTA+GGG | 0.519371 | 1.4:-4089521 | None:intergenic |
| GCAGCCAAAGTTGGACATAG+TGG | 0.521249 | 1.4:-4089941 | None:intergenic |
| ACTTGGATTTGATGACAGTA+AGG | 0.526846 | 1.4:+4090087 | MS.gene063292:CDS |
| CAGTAAGGAACTATTCTCCA+TGG | 0.538917 | 1.4:+4090102 | MS.gene063292:CDS |
| GGAACTTACCCTAGAAGCAT+AGG | 0.542063 | 1.4:+4089513 | MS.gene063292:CDS |
| TGACTTATTTGAAATTGTGT+TGG | 0.550933 | 1.4:+4090225 | MS.gene063292:CDS |
| AAGCTTCTTGTGGAAATGCA+TGG | 0.553279 | 1.4:-4089269 | None:intergenic |
| GAGTGCTGAATTCCTCTGAT+TGG | 0.561029 | 1.4:-4089919 | None:intergenic |
| GCACCACTTGTACATTCCCC+TGG | 0.572742 | 1.4:+4090058 | MS.gene063292:CDS |
| TTAGGATTAACAGGTGGAGG+AGG | 0.573181 | 1.4:+4089471 | MS.gene063292:CDS |
| CGGAGAATCAATCCTTCCCA+TGG | 0.577675 | 1.4:-4090119 | None:intergenic |
| TTATTTGAAATTGTGTTGGA+TGG | 0.586901 | 1.4:+4090229 | MS.gene063292:CDS |
| AGCATAGGGTTCAACTCCAA+TGG | 0.590032 | 1.4:+4089528 | MS.gene063292:CDS |
| TTGGAATGGAGATTATGAGT+TGG | 0.595467 | 1.4:+4089320 | MS.gene063292:CDS |
| GTTGGTAGGAAGAAGAGAAG+GGG | 0.599543 | 1.4:+4089338 | MS.gene063292:CDS |
| GTCTGAGAAAGCACAGTGGG+TGG | 0.603653 | 1.4:+4089805 | MS.gene063292:CDS |
| GAACTTACCCTAGAAGCATA+GGG | 0.603836 | 1.4:+4089514 | MS.gene063292:CDS |
| CAGAAGATAAGACTCAATCC+TGG | 0.610487 | 1.4:+4089150 | MS.gene063292:CDS |
| TGAGTCTGAGAAAGCACAGT+GGG | 0.611118 | 1.4:+4089802 | MS.gene063292:CDS |
| AGGAACTATTCTCCATGGGA+AGG | 0.613811 | 1.4:+4090107 | MS.gene063292:CDS |
| AGTAAGGAACTATTCTCCAT+GGG | 0.620026 | 1.4:+4090103 | MS.gene063292:CDS |
| TTCTCCGTGGCAGAATCGAT+CGG | 0.625199 | 1.4:+4090135 | MS.gene063292:CDS |
| ACAAGTGGTGCTATGAAGCA+TGG | 0.628856 | 1.4:-4090046 | None:intergenic |
| ATAAGCTGGGAAGTGTGTCA+AGG | 0.639438 | 1.4:+4089111 | MS.gene063292:CDS |
| TCTGAGAAAGCACAGTGGGT+GGG | 0.640383 | 1.4:+4089806 | MS.gene063292:CDS |
| TGTAATCTACTGCCAATCAG+AGG | 0.648989 | 1.4:+4089907 | MS.gene063292:CDS |
| GCACCAGGGGAATGTACAAG+TGG | 0.649933 | 1.4:-4090061 | None:intergenic |
| CAAATCCAAGTGCAGCACCA+GGG | 0.652135 | 1.4:-4090075 | None:intergenic |
| AAATGCGGCTGAAATAAGCT+GGG | 0.652323 | 1.4:+4089098 | MS.gene063292:CDS |
| AAATCCAAGTGCAGCACCAG+GGG | 0.660453 | 1.4:-4090074 | None:intergenic |
| GTTGCCGATCGATTCTGCCA+CGG | 0.661063 | 1.4:-4090139 | None:intergenic |
| TTGTCATTAGGATTAACAGG+TGG | 0.691058 | 1.4:+4089465 | MS.gene063292:CDS |
| TGGGAAGGATTGATTCTCCG+TGG | 0.703647 | 1.4:+4090122 | MS.gene063292:CDS |
| TGAATTTGGAAGAGAAAATG+CGG | 0.744058 | 1.4:+4089083 | MS.gene063292:CDS |
| TTGAGTCTGAGAAAGCACAG+TGG | 0.792356 | 1.4:+4089801 | MS.gene063292:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACATAATTTACATTTCTAA+AGG | + | chr1.4:4089624-4089643 | MS.gene063292:intron | 15.0% |
| !!! | AATTATGTAATGTTTTCAAA+TGG | - | chr1.4:4089613-4089632 | None:intergenic | 15.0% |
| !! | AAATAAAATGTACATGACAA+GGG | - | chr1.4:4089589-4089608 | None:intergenic | 20.0% |
| !! | TAAATAAAATGTACATGACA+AGG | - | chr1.4:4089590-4089609 | None:intergenic | 20.0% |
| !! | TGACATATAATTGTAACATT+TGG | + | chr1.4:4089757-4089776 | MS.gene063292:intron | 20.0% |
| !!! | AAATATAGACATTATGGTTT+TGG | + | chr1.4:4089964-4089983 | MS.gene063292:CDS | 20.0% |
| !!! | ATTATGGTTTTGGTTAATTT+TGG | + | chr1.4:4089974-4089993 | MS.gene063292:CDS | 20.0% |
| ! | AAATGAAAGTTGAAGGAAAA+GGG | + | chr1.4:4089424-4089443 | MS.gene063292:CDS | 25.0% |
| ! | AATAAAATGTACATGACAAG+GGG | - | chr1.4:4089588-4089607 | None:intergenic | 25.0% |
| ! | ACAAAAGGAAATAACATCAA+TGG | + | chr1.4:4090160-4090179 | MS.gene063292:CDS | 25.0% |
| ! | ATATTGTATTCTTCTTGGAA+TGG | + | chr1.4:4089306-4089325 | MS.gene063292:CDS | 25.0% |
| ! | ATTTCAAAATAAGCTTCTTG+TGG | - | chr1.4:4089282-4089301 | None:intergenic | 25.0% |
| ! | CAAAAGGAAATAACATCAAT+GGG | + | chr1.4:4090161-4090180 | MS.gene063292:CDS | 25.0% |
| ! | GAAGATATTTCAAATGATGA+AGG | + | chr1.4:4089381-4089400 | MS.gene063292:CDS | 25.0% |
| ! | TCACTATATTGTATTCTTCT+TGG | + | chr1.4:4089301-4089320 | MS.gene063292:CDS | 25.0% |
| !! | AAAAAACACTCTTTTAAACC+AGG | - | chr1.4:4089171-4089190 | None:intergenic | 25.0% |
| !! | TGACTTATTTGAAATTGTGT+TGG | + | chr1.4:4090225-4090244 | MS.gene063292:CDS | 25.0% |
| !! | TTATTTGAAATTGTGTTGGA+TGG | + | chr1.4:4090229-4090248 | MS.gene063292:CDS | 25.0% |
| !! | TTCTAAAGGTCAAAATATGT+TGG | + | chr1.4:4089638-4089657 | MS.gene063292:intron | 25.0% |
| ATAAAATGTACATGACAAGG+GGG | - | chr1.4:4089587-4089606 | None:intergenic | 30.0% | |
| ATGTTGTCATTAGGATTAAC+AGG | + | chr1.4:4089462-4089481 | MS.gene063292:CDS | 30.0% | |
| CTTCACATTAAACTCAGAAT+TGG | + | chr1.4:4089880-4089899 | MS.gene063292:CDS | 30.0% | |
| GAAATGAAAGTTGAAGGAAA+AGG | + | chr1.4:4089423-4089442 | MS.gene063292:CDS | 30.0% | |
| GTCAAAATATGTTGGTCAAT+AGG | + | chr1.4:4089646-4089665 | MS.gene063292:intron | 30.0% | |
| GTTGAAGAAATGAAAGTTGA+AGG | + | chr1.4:4089417-4089436 | MS.gene063292:CDS | 30.0% | |
| TAATTGTAACATTTGGTCAC+AGG | + | chr1.4:4089764-4089783 | MS.gene063292:intron | 30.0% | |
| TGAATTTGGAAGAGAAAATG+CGG | + | chr1.4:4089083-4089102 | MS.gene063292:CDS | 30.0% | |
| ! | AAGAAAACTTTCTTTTGCCT+AGG | - | chr1.4:4089863-4089882 | None:intergenic | 30.0% |
| ! | TCAACTTCATCAACCTTTTT+AGG | + | chr1.4:4089042-4089061 | MS.gene063292:CDS | 30.0% |
| ACACTTGTAGAACTGTTGTT+TGG | - | chr1.4:4089198-4089217 | None:intergenic | 35.0% | |
| ACTGATACAGTAATTGGTTG+TGG | + | chr1.4:4089830-4089849 | MS.gene063292:CDS | 35.0% | |
| AGTAAGGAACTATTCTCCAT+GGG | + | chr1.4:4090103-4090122 | MS.gene063292:CDS | 35.0% | |
| ATCAAGAAACACAGAACCAT+TGG | - | chr1.4:4089547-4089566 | None:intergenic | 35.0% | |
| GAATCTGTGATGTTGTCATT+AGG | + | chr1.4:4089453-4089472 | MS.gene063292:CDS | 35.0% | |
| GGCTGCAAATATAGACATTA+TGG | + | chr1.4:4089958-4089977 | MS.gene063292:CDS | 35.0% | |
| TAAGTTCCTGGAACTCTTAA+AGG | - | chr1.4:4089501-4089520 | None:intergenic | 35.0% | |
| TATGATAAGGACACTGAGTA+TGG | - | chr1.4:4090268-4090287 | None:intergenic | 35.0% | |
| TCTATATTTGCAGCCAAAGT+TGG | - | chr1.4:4089953-4089972 | None:intergenic | 35.0% | |
| TTGGAATGGAGATTATGAGT+TGG | + | chr1.4:4089320-4089339 | MS.gene063292:CDS | 35.0% | |
| TTGTCATTAGGATTAACAGG+TGG | + | chr1.4:4089465-4089484 | MS.gene063292:CDS | 35.0% | |
| ! | AATGGTTCTGTGTTTCTTGA+TGG | + | chr1.4:4089546-4089565 | MS.gene063292:CDS | 35.0% |
| ! | ACTTGGATTTGATGACAGTA+AGG | + | chr1.4:4090087-4090106 | MS.gene063292:CDS | 35.0% |
| !! | AATGGAGATTATGAGTTGGT+AGG | + | chr1.4:4089324-4089343 | MS.gene063292:CDS | 35.0% |
| !! | CAAGTGTTGCTTCTGTTATT+AGG | + | chr1.4:4089211-4089230 | MS.gene063292:CDS | 35.0% |
| !!! | TCAACCTTTTTAGGATCATG+TGG | + | chr1.4:4089051-4089070 | MS.gene063292:CDS | 35.0% |
| AAAATGCGGCTGAAATAAGC+TGG | + | chr1.4:4089097-4089116 | MS.gene063292:CDS | 40.0% | |
| AAATGCGGCTGAAATAAGCT+GGG | + | chr1.4:4089098-4089117 | MS.gene063292:CDS | 40.0% | |
| AAGCTTCTTGTGGAAATGCA+TGG | - | chr1.4:4089272-4089291 | None:intergenic | 40.0% | |
| AATGCATGGTTCCCCAAAAA+AGG | - | chr1.4:4089258-4089277 | None:intergenic | 40.0% | |
| ACCTCCACATGATCCTAAAA+AGG | - | chr1.4:4089058-4089077 | None:intergenic | 40.0% | |
| AGTTGAACCCTATGCTTCTA+GGG | - | chr1.4:4089524-4089543 | None:intergenic | 40.0% | |
| CAGAAGATAAGACTCAATCC+TGG | + | chr1.4:4089150-4089169 | MS.gene063292:CDS | 40.0% | |
| CAGTAAGGAACTATTCTCCA+TGG | + | chr1.4:4090102-4090121 | MS.gene063292:CDS | 40.0% | |
| GTGGGAACTGATACAGTAAT+TGG | + | chr1.4:4089824-4089843 | MS.gene063292:CDS | 40.0% | |
| TCATTAGGATTAACAGGTGG+AGG | + | chr1.4:4089468-4089487 | MS.gene063292:CDS | 40.0% | |
| TGTAATCTACTGCCAATCAG+AGG | + | chr1.4:4089907-4089926 | MS.gene063292:CDS | 40.0% | |
| TGTGGAGGTAGTGATGAATT+TGG | + | chr1.4:4089069-4089088 | MS.gene063292:CDS | 40.0% | |
| TTGGTTGTGGATTTGATCCT+AGG | + | chr1.4:4089843-4089862 | MS.gene063292:CDS | 40.0% | |
| ! | GAACTTACCCTAGAAGCATA+GGG | + | chr1.4:4089514-4089533 | MS.gene063292:CDS | 40.0% |
| !! | AGTTGGTAGGAAGAAGAGAA+GGG | + | chr1.4:4089337-4089356 | MS.gene063292:CDS | 40.0% |
| !!! | ACCTTTTTAGGATCATGTGG+AGG | + | chr1.4:4089054-4089073 | MS.gene063292:CDS | 40.0% |
| AGCATAGGGTTCAACTCCAA+TGG | + | chr1.4:4089528-4089547 | MS.gene063292:CDS | 45.0% | |
| AGGAACTATTCTCCATGGGA+AGG | + | chr1.4:4090107-4090126 | MS.gene063292:CDS | 45.0% | |
| CACTCCACTATGTCCAACTT+TGG | + | chr1.4:4089937-4089956 | MS.gene063292:CDS | 45.0% | |
| CAGAATCGATCGGCAACAAA+AGG | + | chr1.4:4090145-4090164 | MS.gene063292:CDS | 45.0% | |
| GAGTTGAACCCTATGCTTCT+AGG | - | chr1.4:4089525-4089544 | None:intergenic | 45.0% | |
| GGTGTTCTTTGTGCATTTGC+AGG | - | chr1.4:4090022-4090041 | None:intergenic | 45.0% | |
| TTAGGATTAACAGGTGGAGG+AGG | + | chr1.4:4089471-4089490 | MS.gene063292:CDS | 45.0% | |
| ! | ATAAGCTGGGAAGTGTGTCA+AGG | + | chr1.4:4089111-4089130 | MS.gene063292:CDS | 45.0% |
| ! | GGAACTTACCCTAGAAGCAT+AGG | + | chr1.4:4089513-4089532 | MS.gene063292:CDS | 45.0% |
| ! | GGTGCTATGAAGCATGGATT+TGG | - | chr1.4:4090043-4090062 | None:intergenic | 45.0% |
| ! | GGTGTTCCTTTAAGAGTTCC+AGG | + | chr1.4:4089492-4089511 | MS.gene063292:CDS | 45.0% |
| ! | GTTGGTAGGAAGAAGAGAAG+GGG | + | chr1.4:4089338-4089357 | MS.gene063292:CDS | 45.0% |
| ! | TGAGTCTGAGAAAGCACAGT+GGG | + | chr1.4:4089802-4089821 | MS.gene063292:CDS | 45.0% |
| ! | TTGAGTCTGAGAAAGCACAG+TGG | + | chr1.4:4089801-4089820 | MS.gene063292:CDS | 45.0% |
| !! | ACAAGTGGTGCTATGAAGCA+TGG | - | chr1.4:4090049-4090068 | None:intergenic | 45.0% |
| !! | ATGCTTCTAGGGTAAGTTCC+TGG | - | chr1.4:4089513-4089532 | None:intergenic | 45.0% |
| !! | GAGTGCTGAATTCCTCTGAT+TGG | - | chr1.4:4089922-4089941 | None:intergenic | 45.0% |
| !! | GAGTTGGTAGGAAGAAGAGA+AGG | + | chr1.4:4089336-4089355 | MS.gene063292:CDS | 45.0% |
| !!! | CCTCTTCCTGGTCCTTTTTT+GGG | + | chr1.4:4089243-4089262 | MS.gene063292:CDS | 45.0% |
| !!! | CTCTTCCTGGTCCTTTTTTG+GGG | + | chr1.4:4089244-4089263 | MS.gene063292:CDS | 45.0% |
| AAATCCAAGTGCAGCACCAG+GGG | - | chr1.4:4090077-4090096 | None:intergenic | 50.0% | |
| CAAATCCAAGTGCAGCACCA+GGG | - | chr1.4:4090078-4090097 | None:intergenic | 50.0% | |
| CCCAAAAAAGGACCAGGAAG+AGG | - | chr1.4:4089246-4089265 | None:intergenic | 50.0% | |
| CGGAGAATCAATCCTTCCCA+TGG | - | chr1.4:4090122-4090141 | None:intergenic | 50.0% | |
| GCAGCCAAAGTTGGACATAG+TGG | - | chr1.4:4089944-4089963 | None:intergenic | 50.0% | |
| TCAAATCCAAGTGCAGCACC+AGG | - | chr1.4:4090079-4090098 | None:intergenic | 50.0% | |
| TGGTTCCCCAAAAAAGGACC+AGG | - | chr1.4:4089252-4089271 | None:intergenic | 50.0% | |
| TTCTCCGTGGCAGAATCGAT+CGG | + | chr1.4:4090135-4090154 | MS.gene063292:CDS | 50.0% | |
| ! | TCTGAGAAAGCACAGTGGGT+GGG | + | chr1.4:4089806-4089825 | MS.gene063292:CDS | 50.0% |
| ! | TGGGAAGGATTGATTCTCCG+TGG | + | chr1.4:4090122-4090141 | MS.gene063292:CDS | 50.0% |
| !!! | GCCTCTTCCTGGTCCTTTTT+TGG | + | chr1.4:4089242-4089261 | MS.gene063292:CDS | 50.0% |
| AGGACTTCTCTGCCTCTTCC+TGG | + | chr1.4:4089231-4089250 | MS.gene063292:CDS | 55.0% | |
| GCACCACTTGTACATTCCCC+TGG | + | chr1.4:4090058-4090077 | MS.gene063292:CDS | 55.0% | |
| GCACCAGGGGAATGTACAAG+TGG | - | chr1.4:4090064-4090083 | None:intergenic | 55.0% | |
| ! | GTCTGAGAAAGCACAGTGGG+TGG | + | chr1.4:4089805-4089824 | MS.gene063292:CDS | 55.0% |
| ! | GTTGCCGATCGATTCTGCCA+CGG | - | chr1.4:4090142-4090161 | None:intergenic | 55.0% |
| !! | CATTCCCCTGGTGCTGCACT+TGG | + | chr1.4:4090070-4090089 | MS.gene063292:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 4089018 | 4090288 | 4089018 | ID=MS.gene063292 |
| chr1.4 | mRNA | 4089018 | 4090288 | 4089018 | ID=MS.gene063292.t1;Parent=MS.gene063292 |
| chr1.4 | exon | 4089018 | 4089567 | 4089018 | ID=MS.gene063292.t1.exon1;Parent=MS.gene063292.t1 |
| chr1.4 | CDS | 4089018 | 4089567 | 4089018 | ID=cds.MS.gene063292.t1;Parent=MS.gene063292.t1 |
| chr1.4 | exon | 4089786 | 4090288 | 4089786 | ID=MS.gene063292.t1.exon2;Parent=MS.gene063292.t1 |
| chr1.4 | CDS | 4089786 | 4090288 | 4089786 | ID=cds.MS.gene063292.t1;Parent=MS.gene063292.t1 |
| Gene Sequence |
| Protein sequence |
