Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063746.t1 | XP_003609929.1 | 95.1 | 1032 | 48 | 2 | 1 | 1032 | 3 | 1031 | 0.00E+00 | 1962.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063746.t1 | Q9SMZ4 | 67.6 | 1040 | 322 | 8 | 3 | 1032 | 13 | 1047 | 0.0e+00 | 1401.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063746.t1 | G7JS28 | 95.1 | 1032 | 48 | 2 | 1 | 1032 | 3 | 1031 | 0.0e+00 | 1962.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050800 | MS.gene063746 | 0.806377 | 8.47E-50 | -1.69E-46 |
| MS.gene052922 | MS.gene063746 | 0.841636 | 4.21E-58 | -1.69E-46 |
| MS.gene053175 | MS.gene063746 | 0.829917 | 3.94E-55 | -1.69E-46 |
| MS.gene053596 | MS.gene063746 | 0.811301 | 7.50E-51 | -1.69E-46 |
| MS.gene054549 | MS.gene063746 | 0.81825 | 2.16E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063746.t1 | MTR_4g124470 | 95.058 | 1032 | 48 | 2 | 1 | 1032 | 3 | 1031 | 0.0 | 2035 |
| MS.gene063746.t1 | MTR_4g124470 | 94.321 | 1039 | 49 | 3 | 1 | 1032 | 3 | 1038 | 0.0 | 2027 |
| MS.gene063746.t1 | MTR_4g124470 | 94.748 | 952 | 47 | 2 | 81 | 1032 | 10 | 958 | 0.0 | 1870 |
| MS.gene063746.t1 | MTR_4g124470 | 94.737 | 950 | 47 | 2 | 83 | 1032 | 1 | 947 | 0.0 | 1866 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063746.t1 | AT4G33150 | 67.723 | 1041 | 321 | 8 | 2 | 1032 | 12 | 1047 | 0.0 | 1456 |
| MS.gene063746.t1 | AT4G33150 | 67.723 | 1041 | 321 | 8 | 2 | 1032 | 12 | 1047 | 0.0 | 1456 |
| MS.gene063746.t1 | AT4G33150 | 67.723 | 1041 | 321 | 8 | 2 | 1032 | 12 | 1047 | 0.0 | 1456 |
| MS.gene063746.t1 | AT4G33150 | 62.313 | 467 | 169 | 3 | 569 | 1032 | 3 | 465 | 0.0 | 606 |
Find 226 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCGCAACTCTTTAATTTA+TGG | 0.062968 | 8.2:-8964286 | MS.gene063746:CDS |
| CAAACTTGCCTGCTCATTTA+AGG | 0.104303 | 8.2:-8967928 | MS.gene063746:CDS |
| TGACTAGGCTTCGCATATTT+TGG | 0.132456 | 8.2:-8968001 | MS.gene063746:intron |
| AATAGATGTTGATATCATTT+TGG | 0.140848 | 8.2:-8966536 | MS.gene063746:CDS |
| TATCAGAATCTGTGAATAAA+TGG | 0.154234 | 8.2:-8971354 | MS.gene063746:CDS |
| AGAAGGTTGAACAATAATTT+TGG | 0.164479 | 8.2:+8971267 | None:intergenic |
| GTCCCAATTTGTCACAAATT+TGG | 0.171779 | 8.2:-8967969 | MS.gene063746:CDS |
| CTTTCTGTGCCTTGTGAGTA+TGG | 0.204473 | 8.2:+8970847 | None:intergenic |
| GAATTGATTGTTGGAGAAAA+TGG | 0.208921 | 8.2:-8970671 | MS.gene063746:CDS |
| TTAATTTATGGAGATTTATA+TGG | 0.210990 | 8.2:-8964274 | MS.gene063746:CDS |
| AAACACTTTCATGGGATCTT+TGG | 0.220013 | 8.2:+8969542 | None:intergenic |
| AAGCCAAATTTGTGACAAAT+TGG | 0.238819 | 8.2:+8967966 | None:intergenic |
| TGTAGTTCACTTAGTTTAGA+TGG | 0.273032 | 8.2:+8969833 | None:intergenic |
| GGGAAAAGATTACTTGCATT+TGG | 0.294277 | 8.2:-8970650 | MS.gene063746:CDS |
| GCACCAGACACATCCGTTAT+TGG | 0.303263 | 8.2:-8969343 | MS.gene063746:intron |
| AATGGATTGTTGGCATCTTC+AGG | 0.309153 | 8.2:+8965036 | None:intergenic |
| CAATTGATTCACCCTTCTTC+AGG | 0.309166 | 8.2:-8968979 | MS.gene063746:intron |
| CTTAGTTAATTGCATGTATT+GGG | 0.310022 | 8.2:-8969134 | MS.gene063746:intron |
| TAGATGGATCCACAAAAGTA+TGG | 0.312041 | 8.2:+8969849 | None:intergenic |
| CTGCAGCTTCAATAATATCT+AGG | 0.319514 | 8.2:+8967470 | None:intergenic |
| AACACTTTCATGGGATCTTT+GGG | 0.324739 | 8.2:+8969543 | None:intergenic |
| AGATCATGGCGACACTTTCT+AGG | 0.327865 | 8.2:-8964010 | MS.gene063746:CDS |
| AGAGCTACTTTGCTTGAATT+CGG | 0.328075 | 8.2:-8963233 | MS.gene063746:CDS |
| AAGAAGGCATAAGCTCTATT+TGG | 0.328153 | 8.2:+8970873 | None:intergenic |
| CACTTTGTCAAACACTTTCA+TGG | 0.328950 | 8.2:+8969533 | None:intergenic |
| TACCTGAATTTATATGCTAA+TGG | 0.330123 | 8.2:+8965018 | None:intergenic |
| AGCTGAATTCCAGTTACATT+TGG | 0.335411 | 8.2:+8966368 | None:intergenic |
| GAAAGAAAACATGCCTTTGC+TGG | 0.339421 | 8.2:-8970829 | MS.gene063746:CDS |
| GTCTTTACTGGCTCGGGAAA+TGG | 0.347110 | 8.2:-8970304 | MS.gene063746:intron |
| TCCTTTCTTGTAGTTTGCTC+TGG | 0.349399 | 8.2:-8969899 | MS.gene063746:intron |
| GATGCTGGTATAACAATTCT+TGG | 0.355805 | 8.2:-8965615 | MS.gene063746:CDS |
| ATACCTGCTCTGCATCCTTC+AGG | 0.358896 | 8.2:+8966503 | None:intergenic |
| GAGCTACTTTGCTTGAATTC+GGG | 0.360095 | 8.2:-8963232 | MS.gene063746:CDS |
| ATTCAAGATTTGATGAGAAA+TGG | 0.360260 | 8.2:-8969076 | MS.gene063746:CDS |
| AGAAGTAAGAGGAAGATGTT+TGG | 0.360331 | 8.2:-8971397 | None:intergenic |
| TATGGAGATTTATATGGAAT+AGG | 0.360466 | 8.2:-8964268 | MS.gene063746:CDS |
| GGCGAAACTTTACATATTGA+TGG | 0.362283 | 8.2:-8964653 | MS.gene063746:intron |
| TGCAGATGATAAGGCTGTTC+TGG | 0.367690 | 8.2:-8966818 | MS.gene063746:CDS |
| TATGATTATGAATTGATTGT+TGG | 0.372175 | 8.2:-8970680 | MS.gene063746:CDS |
| AAAATTGGAGTGTAATGTTC+AGG | 0.372458 | 8.2:+8969379 | None:intergenic |
| TCTTAGTTAATTGCATGTAT+TGG | 0.375626 | 8.2:-8969135 | MS.gene063746:intron |
| TCCAACAGAATTTGCAAAAG+AGG | 0.376427 | 8.2:-8968101 | MS.gene063746:CDS |
| TCTCCTATCAATGCTCCATC+TGG | 0.384278 | 8.2:+8963885 | None:intergenic |
| TCACCCTGTGGTCTCATCCT+TGG | 0.386368 | 8.2:-8971181 | MS.gene063746:CDS |
| GAAGGCATTCCAAATGTAAC+TGG | 0.386769 | 8.2:-8966377 | MS.gene063746:CDS |
| TCCAGCTGCTGTGGGAGCTC+TGG | 0.387534 | 8.2:-8963159 | MS.gene063746:intron |
| GCGTGGTATATAATCATATA+AGG | 0.391117 | 8.2:+8967871 | None:intergenic |
| TCTCTCCTCCATGCGGAAAC+AGG | 0.392544 | 8.2:+8963644 | None:intergenic |
| TCCTTCCTTGGCTGCTGCTA+AGG | 0.392618 | 8.2:-8970398 | MS.gene063746:CDS |
| ATCCATTAGCATATAAATTC+AGG | 0.392846 | 8.2:-8965020 | MS.gene063746:intron |
| TACTAGGTCATACCTATTCC+TGG | 0.394462 | 8.2:+8965576 | None:intergenic |
| GCAGATATAACTTGTGATAT+AGG | 0.397513 | 8.2:-8969034 | MS.gene063746:CDS |
| AGTTTCGCCGTGATATTTGT+AGG | 0.400233 | 8.2:+8964667 | None:intergenic |
| GCTCAAATGCTATCATCATT+TGG | 0.400718 | 8.2:-8966607 | MS.gene063746:CDS |
| TAAATTAAAGAGTTGCGGTT+TGG | 0.402978 | 8.2:+8964289 | None:intergenic |
| TGATGAATTCTCTTAGTAGA+AGG | 0.407101 | 8.2:+8971250 | None:intergenic |
| GATCCAGATGGAGCATTGAT+AGG | 0.408026 | 8.2:-8963888 | MS.gene063746:CDS |
| TGTAGTTTGCTCTGGTGCTC+AGG | 0.408673 | 8.2:-8969891 | MS.gene063746:intron |
| TTTATATGCTAATGGATTGT+TGG | 0.411001 | 8.2:+8965026 | None:intergenic |
| TCACCTGGAGTGTATACTTC+AGG | 0.415501 | 8.2:+8962996 | None:intergenic |
| GCAACTCAGGGATTGCCATT+GGG | 0.415806 | 8.2:-8970346 | MS.gene063746:CDS |
| AATTGATTGTTGGAGAAAAT+GGG | 0.428975 | 8.2:-8970670 | MS.gene063746:CDS |
| CCGTGATATTTGTAGGTGGC+AGG | 0.430034 | 8.2:+8964674 | None:intergenic |
| ATGATTCAGCTAAAAGACTA+AGG | 0.430434 | 8.2:-8964348 | MS.gene063746:CDS |
| ACCAGAGCTCCCACAGCAGC+TGG | 0.430788 | 8.2:+8963158 | None:intergenic |
| GAATTCGGGAAAACTATTGA+TGG | 0.431573 | 8.2:-8963218 | MS.gene063746:CDS |
| TATAATCATATAAGGAGGTT+AGG | 0.433937 | 8.2:+8967879 | None:intergenic |
| GAAGTAAGAGGAAGATGTTT+GGG | 0.434278 | 8.2:-8971396 | None:intergenic |
| ATTGCATGTATTGGGAGAAA+AGG | 0.438391 | 8.2:-8969126 | MS.gene063746:CDS |
| CATGTCCATGCTAGATGATA+AGG | 0.441776 | 8.2:-8965643 | MS.gene063746:CDS |
| GTAACAGGGTATTTAAGTCT+TGG | 0.442453 | 8.2:-8970463 | MS.gene063746:intron |
| AGATCAGTGCAGATTGTTGA+AGG | 0.443060 | 8.2:-8966395 | MS.gene063746:intron |
| TTCAGACAAGAGGTGTCTTA+AGG | 0.444078 | 8.2:-8963028 | MS.gene063746:CDS |
| AAACATGCCTTTGCTGGATA+AGG | 0.445017 | 8.2:-8970823 | MS.gene063746:intron |
| ATTGATTTCTTGCGTGGATT+GGG | 0.450552 | 8.2:-8970602 | MS.gene063746:CDS |
| TGATCAATTTCTGATAAATG+AGG | 0.450882 | 8.2:-8967494 | MS.gene063746:CDS |
| CGTGGAACCCTCCGTTATGA+AGG | 0.452301 | 8.2:-8964223 | MS.gene063746:intron |
| ATGTTTGGGAACGGTGTTGT+TGG | 0.453688 | 8.2:-8971382 | MS.gene063746:CDS |
| GGTGAGATGGGCTTGGACCC+AGG | 0.453772 | 8.2:-8965594 | MS.gene063746:CDS |
| TGTTAGATATGATGCAATAA+CGG | 0.453846 | 8.2:-8968182 | MS.gene063746:intron |
| ATGGGCTTGGACCCAGGAAT+AGG | 0.458978 | 8.2:-8965588 | MS.gene063746:intron |
| ATCAGAATCTGTGAATAAAT+GGG | 0.459403 | 8.2:-8971353 | MS.gene063746:CDS |
| GATAGGAGAGGAGGATATAT+CGG | 0.461696 | 8.2:-8963871 | MS.gene063746:CDS |
| AGGAGAGCTTGCATAGTCAA+TGG | 0.463364 | 8.2:-8967908 | MS.gene063746:CDS |
| CCAATGGTATAAAACATTGT+TGG | 0.463677 | 8.2:-8966578 | MS.gene063746:CDS |
| ACAGGTTGGTGCAGATGATA+AGG | 0.465036 | 8.2:-8966827 | MS.gene063746:intron |
| AGCCAAATTTGTGACAAATT+GGG | 0.465211 | 8.2:+8967967 | None:intergenic |
| ATGGCGACACTTTCTAGGAT+TGG | 0.465848 | 8.2:-8964005 | MS.gene063746:CDS |
| ATCATACATGTATCCTTCCT+TGG | 0.466001 | 8.2:-8970410 | MS.gene063746:CDS |
| AGATTACTTCATCATGGAAC+TGG | 0.467747 | 8.2:-8971295 | MS.gene063746:CDS |
| GATTGATTTCTTGCGTGGAT+TGG | 0.470829 | 8.2:-8970603 | MS.gene063746:CDS |
| AATTCTTGGTGAGATGGGCT+TGG | 0.470872 | 8.2:-8965601 | MS.gene063746:CDS |
| CAGCTGGAATACCAACAGTA+AGG | 0.471355 | 8.2:+8963174 | None:intergenic |
| TGCAACTCAGGGATTGCCAT+TGG | 0.471975 | 8.2:-8970347 | MS.gene063746:CDS |
| AAAGCAAAAGCAGGAAAGTC+AGG | 0.472612 | 8.2:+8964322 | None:intergenic |
| AAAGCACTATGGCATGAAGC+AGG | 0.474044 | 8.2:+8963675 | None:intergenic |
| TCACAACACAACCATAAACT+TGG | 0.477682 | 8.2:+8969586 | None:intergenic |
| CAACTCAGGGATTGCCATTG+GGG | 0.478672 | 8.2:-8970345 | MS.gene063746:CDS |
| CTCTCCTCATTCTTTAGAGT+CGG | 0.479336 | 8.2:+8963960 | None:intergenic |
| CTCCATAAATTAAAGAGTTG+CGG | 0.481371 | 8.2:+8964284 | None:intergenic |
| GAAGCATCAACTGTCTTTCG+TGG | 0.483593 | 8.2:-8964241 | MS.gene063746:CDS |
| AGTAAAATTTCACTTACGCT+TGG | 0.484189 | 8.2:-8966724 | MS.gene063746:CDS |
| ATAACAATTCTTGGTGAGAT+GGG | 0.485910 | 8.2:-8965606 | MS.gene063746:CDS |
| TATAACAATTCTTGGTGAGA+TGG | 0.488831 | 8.2:-8965607 | MS.gene063746:CDS |
| CATTCCCCTCCATGTCTTCG+TGG | 0.489845 | 8.2:+8968152 | None:intergenic |
| TGCAGCCTTAGCAGCAGCCA+AGG | 0.493775 | 8.2:+8970393 | None:intergenic |
| AGTAATATACCTTTCTGTGT+TGG | 0.494651 | 8.2:+8963611 | None:intergenic |
| ACTTTGTCAAACACTTTCAT+GGG | 0.496078 | 8.2:+8969534 | None:intergenic |
| CCGATATCACCTACCAATAA+CGG | 0.497549 | 8.2:+8969330 | None:intergenic |
| TTTCTGTGCCTTGTGAGTAT+GGG | 0.498508 | 8.2:+8970848 | None:intergenic |
| TGTTGGTATTCCAGCTGCTG+TGG | 0.499554 | 8.2:-8963168 | MS.gene063746:CDS |
| CTTGGTAAAGTTCATGAAAA+CGG | 0.501285 | 8.2:-8966706 | MS.gene063746:CDS |
| ACTAAGTGAACTACATAAGA+TGG | 0.503097 | 8.2:-8969825 | MS.gene063746:intron |
| CTACCAATAACGGATGTGTC+TGG | 0.503459 | 8.2:+8969340 | None:intergenic |
| TGGTGAAGAAATTGCAACTC+AGG | 0.505018 | 8.2:-8970359 | MS.gene063746:CDS |
| TGTTTGGGAACGGTGTTGTT+GGG | 0.505431 | 8.2:-8971381 | MS.gene063746:CDS |
| CAAGCTCTCCTTAAATGAGC+AGG | 0.507376 | 8.2:+8967920 | None:intergenic |
| CCTGTAGGTGCCATCCGAGC+TGG | 0.508824 | 8.2:-8964704 | MS.gene063746:CDS |
| GTACCTGAAGGATGCAGAGC+AGG | 0.509916 | 8.2:-8966506 | MS.gene063746:intron |
| CCAGCTCGGATGGCACCTAC+AGG | 0.510844 | 8.2:+8964704 | None:intergenic |
| AGGCAACATCAAAAGCACTA+TGG | 0.511973 | 8.2:+8963664 | None:intergenic |
| CCACTTGGTTAACTGTCATG+TGG | 0.512401 | 8.2:-8967437 | MS.gene063746:CDS |
| TTTGGGATCTTTGTACCTGA+AGG | 0.513179 | 8.2:-8966518 | MS.gene063746:CDS |
| TATAGGGTTTAGTGAGATCA+TGG | 0.516919 | 8.2:-8964024 | MS.gene063746:intron |
| CTAGATATTATTGAAGCTGC+AGG | 0.517883 | 8.2:-8967469 | MS.gene063746:CDS |
| CGTAGCAAATGCTTGCATTG+AGG | 0.522620 | 8.2:-8966053 | MS.gene063746:intron |
| AGGATTGCGTCCAGCTCGGA+TGG | 0.524365 | 8.2:+8964694 | None:intergenic |
| GCCTTAGCAGCAGCCAAGGA+AGG | 0.525409 | 8.2:+8970397 | None:intergenic |
| TGCAGGAGGCTCCTTCCACT+TGG | 0.526358 | 8.2:-8967452 | MS.gene063746:CDS |
| CCGCTGGTTGTTTGATGCCA+AGG | 0.527121 | 8.2:+8971164 | None:intergenic |
| AGATGGATCCACAAAAGTAT+GGG | 0.528191 | 8.2:+8969850 | None:intergenic |
| CACGAAGACATGGAGGGGAA+TGG | 0.528495 | 8.2:-8968151 | MS.gene063746:CDS |
| TCATGAAAACGGCATGGAGA+AGG | 0.528840 | 8.2:-8966695 | MS.gene063746:CDS |
| AGAAATGGATGTCCACTTGT+TGG | 0.530432 | 8.2:-8969061 | MS.gene063746:CDS |
| ATACCTTTCTGTGTTGGAGT+AGG | 0.530928 | 8.2:+8963617 | None:intergenic |
| TTGTTGGCATCTTCAGGAGA+TGG | 0.531880 | 8.2:+8965042 | None:intergenic |
| GCTACGATAATGTGACAACT+AGG | 0.532719 | 8.2:+8966070 | None:intergenic |
| TTTAGCCTTATCATCTAGCA+TGG | 0.533798 | 8.2:+8965638 | None:intergenic |
| GATGATAAGGCTAAAGATGC+TGG | 0.536549 | 8.2:-8965630 | MS.gene063746:CDS |
| GTGTATACTTCAGGTTGGAT+AGG | 0.540931 | 8.2:+8963005 | None:intergenic |
| CTTGTGAGTATGGGAAAAGA+AGG | 0.542708 | 8.2:+8970857 | None:intergenic |
| TGCAGCTTCAATAATATCTA+GGG | 0.544465 | 8.2:+8967471 | None:intergenic |
| TGGAGCATTGATAGGAGAGG+AGG | 0.547265 | 8.2:-8963880 | MS.gene063746:CDS |
| TGTGCTAGATTACTTCATCA+TGG | 0.548301 | 8.2:-8971301 | MS.gene063746:CDS |
| AAGGCTGCAGTCATTTCTGT+TGG | 0.549082 | 8.2:-8970379 | MS.gene063746:CDS |
| CTACGATAATGTGACAACTA+GGG | 0.550212 | 8.2:+8966071 | None:intergenic |
| ATATGGTGTATACCTGAAGA+AGG | 0.551418 | 8.2:+8968967 | None:intergenic |
| GTTGGTATTCCAGCTGCTGT+GGG | 0.551669 | 8.2:-8963167 | MS.gene063746:CDS |
| GATGATAGCATTTGAGCAGC+TGG | 0.553928 | 8.2:+8966613 | None:intergenic |
| GATGATCCAAGTGACAGAAA+AGG | 0.555873 | 8.2:+8970430 | None:intergenic |
| CACTTGGTTAACTGTCATGT+GGG | 0.556353 | 8.2:-8967436 | MS.gene063746:CDS |
| TATCCTACTCCAACACAGAA+AGG | 0.556502 | 8.2:-8963620 | MS.gene063746:CDS |
| GATGCCAAGGATGAGACCAC+AGG | 0.558412 | 8.2:+8971177 | None:intergenic |
| ACTGCCATGGCCCTTACTGT+TGG | 0.561603 | 8.2:-8963185 | MS.gene063746:CDS |
| TGGAATTCAGCTTGATGTGA+TGG | 0.562069 | 8.2:-8966357 | MS.gene063746:CDS |
| AGATGGAAGTCCACCACAGT+AGG | 0.563553 | 8.2:+8965059 | None:intergenic |
| CCCCTCCATGTCTTCGTGGT+AGG | 0.565406 | 8.2:+8968156 | None:intergenic |
| TTCAGTTGGATTAGCAAGAG+AGG | 0.565861 | 8.2:+8966774 | None:intergenic |
| ACAAACAAAATTCAGACAAG+AGG | 0.572985 | 8.2:-8963038 | MS.gene063746:CDS |
| TATAAATCATGCCTTCATAA+CGG | 0.573146 | 8.2:+8964212 | None:intergenic |
| AGACATTCCAAAGCAAAAGC+AGG | 0.573853 | 8.2:+8964313 | None:intergenic |
| CGACGAGGCACATATGCAGA+AGG | 0.575121 | 8.2:-8965103 | MS.gene063746:CDS |
| GATGCTCTCTATGAAGAAGT+TGG | 0.580939 | 8.2:-8971226 | MS.gene063746:CDS |
| ATATCTGCTATTCCAACAAG+TGG | 0.581840 | 8.2:+8969049 | None:intergenic |
| ACTAGGTCATACCTATTCCT+GGG | 0.582968 | 8.2:+8965577 | None:intergenic |
| CATCATTTGGATCCAGCCAA+TGG | 0.586441 | 8.2:-8966594 | MS.gene063746:CDS |
| TGGCAGGATTGCGTCCAGCT+CGG | 0.586821 | 8.2:+8964690 | None:intergenic |
| TCTTTCACTTCCTACTGTGG+TGG | 0.587351 | 8.2:-8965069 | MS.gene063746:CDS |
| GGTGAAGAAATTGCAACTCA+GGG | 0.588076 | 8.2:-8970358 | MS.gene063746:CDS |
| GCACAGTGTGATGGAGTCAA+AGG | 0.595862 | 8.2:+8971319 | None:intergenic |
| CTTATCATCTAGCATGGACA+TGG | 0.596716 | 8.2:+8965644 | None:intergenic |
| TATTTCAGCTGGAATCCTGT+AGG | 0.596927 | 8.2:-8964719 | MS.gene063746:intron |
| CAACCTGAAGTATACACTCC+AGG | 0.596974 | 8.2:-8962999 | None:intergenic |
| AGCTGGAATACCAACAGTAA+GGG | 0.599510 | 8.2:+8963175 | None:intergenic |
| GAAACTAATCAAGCAAGGCA+TGG | 0.601563 | 8.2:-8969624 | MS.gene063746:CDS |
| CTGGAGTGTATACTTCAGGT+TGG | 0.602410 | 8.2:+8963000 | None:intergenic |
| GAGTCAGATTTGCGCATGCG+TGG | 0.604903 | 8.2:+8967854 | None:intergenic |
| AACAGGAAACTAATCAAGCA+AGG | 0.605183 | 8.2:-8969629 | MS.gene063746:intron |
| GGAATGATTGATTTCTTGCG+TGG | 0.606806 | 8.2:-8970608 | MS.gene063746:CDS |
| TGATGTTGCCTGTTTCCGCA+TGG | 0.607057 | 8.2:-8963652 | MS.gene063746:CDS |
| GGATTCCTACCACGAAGACA+TGG | 0.609570 | 8.2:-8968161 | MS.gene063746:CDS |
| TCATCCGACTCTAAAGAATG+AGG | 0.610462 | 8.2:-8963964 | MS.gene063746:CDS |
| AGTAATCTAGCACAGTGTGA+TGG | 0.610805 | 8.2:+8971310 | None:intergenic |
| AAATTGGAGTGTAATGTTCA+GGG | 0.611393 | 8.2:+8969380 | None:intergenic |
| AAGAGGAAGATGTTTGGGAA+CGG | 0.612656 | 8.2:-8971391 | None:intergenic |
| AAGTCTTTCACTTCCTACTG+TGG | 0.613298 | 8.2:-8965072 | MS.gene063746:CDS |
| TACGATAATGTGACAACTAG+GGG | 0.615232 | 8.2:+8966072 | None:intergenic |
| GAGAGGAGGATATATCGGAA+AGG | 0.615819 | 8.2:-8963866 | MS.gene063746:CDS |
| AAGCACTATGGCATGAAGCA+GGG | 0.617713 | 8.2:+8963676 | None:intergenic |
| GTCTGACAGGTTTCTCTGAG+CGG | 0.621105 | 8.2:-8967526 | MS.gene063746:intron |
| AGATGGAGCATTGATAGGAG+AGG | 0.625287 | 8.2:-8963883 | MS.gene063746:CDS |
| AATCATGCCTTCATAACGGA+GGG | 0.629458 | 8.2:+8964216 | None:intergenic |
| TAAAGTTCATGAAAACGGCA+TGG | 0.629653 | 8.2:-8966701 | MS.gene063746:CDS |
| ATGACAGTTAACCAAGTGGA+AGG | 0.634711 | 8.2:+8967441 | None:intergenic |
| TCCTACCACGAAGACATGGA+GGG | 0.638823 | 8.2:-8968157 | MS.gene063746:CDS |
| CCTGCCACCTACAAATATCA+CGG | 0.645275 | 8.2:-8964674 | MS.gene063746:CDS |
| AAATCATGCCTTCATAACGG+AGG | 0.646151 | 8.2:+8964215 | None:intergenic |
| ATCTGCTTATAGCTTAACAA+CGG | 0.647351 | 8.2:+8969097 | None:intergenic |
| GATATAACTTGTGATATAGG+TGG | 0.647734 | 8.2:-8969031 | MS.gene063746:CDS |
| ACACGCACCTTATCCAGCAA+AGG | 0.648996 | 8.2:+8970816 | None:intergenic |
| TGCTTATAGCTTAACAACGG+AGG | 0.649696 | 8.2:+8969100 | None:intergenic |
| GATATTATTGAAGCTGCAGG+AGG | 0.652514 | 8.2:-8967466 | MS.gene063746:CDS |
| AATACCAACAGTAAGGGCCA+TGG | 0.655144 | 8.2:+8963181 | None:intergenic |
| TCACAAGACTTGTCACCCTG+TGG | 0.655585 | 8.2:-8971193 | MS.gene063746:CDS |
| ATGCCAAGGATGAGACCACA+GGG | 0.658340 | 8.2:+8971178 | None:intergenic |
| CCTACCACGAAGACATGGAG+GGG | 0.662630 | 8.2:-8968156 | MS.gene063746:CDS |
| ATTGTTCGCGAAGATCCAGA+TGG | 0.664052 | 8.2:-8963900 | MS.gene063746:CDS |
| TTCCTACCACGAAGACATGG+AGG | 0.664890 | 8.2:-8968158 | MS.gene063746:CDS |
| ACGAGAGGACAAATCCCCAA+TGG | 0.665124 | 8.2:+8970331 | None:intergenic |
| CCACATGACAGTTAACCAAG+TGG | 0.665864 | 8.2:+8967437 | None:intergenic |
| GTGAATCAATTGACGTAGTG+CGG | 0.666266 | 8.2:+8968990 | None:intergenic |
| GATGGATCCACAAAAGTATG+GGG | 0.670075 | 8.2:+8969851 | None:intergenic |
| TCGGAAAGGATATTAACACT+AGG | 0.670943 | 8.2:-8963852 | MS.gene063746:CDS |
| TGATGATCCAGATCACATGA+TGG | 0.673821 | 8.2:-8965139 | MS.gene063746:intron |
| TTCGCCGTGATATTTGTAGG+TGG | 0.679497 | 8.2:+8964670 | None:intergenic |
| GACGAGGCACATATGCAGAA+GGG | 0.682146 | 8.2:-8965102 | MS.gene063746:CDS |
| TGGTATATAATCATATAAGG+AGG | 0.687295 | 8.2:+8967874 | None:intergenic |
| TATGGTGTATACCTGAAGAA+GGG | 0.691493 | 8.2:+8968968 | None:intergenic |
| AGAGCTTGCATAGTCAATGG+AGG | 0.692452 | 8.2:-8967905 | MS.gene063746:CDS |
| CAAGAGCAAATACAAGACAT+CGG | 0.695369 | 8.2:-8967634 | MS.gene063746:intron |
| TGTTGCCTGTTTCCGCATGG+AGG | 0.700266 | 8.2:-8963649 | MS.gene063746:CDS |
| TGTTGTGATAGCTCAAGACA+TGG | 0.703959 | 8.2:-8969571 | MS.gene063746:CDS |
| CCTTGGCATCAAACAACCAG+CGG | 0.704811 | 8.2:-8971164 | MS.gene063746:intron |
| AGGATAGTCTCTCCTCCATG+CGG | 0.707814 | 8.2:+8963637 | None:intergenic |
| GGCAATGAAGATGATCGACG+AGG | 0.724936 | 8.2:-8965118 | MS.gene063746:CDS |
| ACGATAATGTGACAACTAGG+GGG | 0.726794 | 8.2:+8966073 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 8963000 | 8971404 | 8963000 | ID=MS.gene063746 |
| chr8.2 | mRNA | 8963000 | 8971404 | 8963000 | ID=MS.gene063746.t1;Parent=MS.gene063746 |
| chr8.2 | exon | 8971165 | 8971404 | 8971165 | ID=MS.gene063746.t1.exon1;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8971165 | 8971404 | 8971165 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8970824 | 8970910 | 8970824 | ID=MS.gene063746.t1.exon2;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8970824 | 8970910 | 8970824 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8970597 | 8970726 | 8970597 | ID=MS.gene063746.t1.exon3;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8970597 | 8970726 | 8970597 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8970305 | 8970478 | 8970305 | ID=MS.gene063746.t1.exon4;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8970305 | 8970478 | 8970305 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8969826 | 8969908 | 8969826 | ID=MS.gene063746.t1.exon5;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8969826 | 8969908 | 8969826 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8969536 | 8969646 | 8969536 | ID=MS.gene063746.t1.exon6;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8969536 | 8969646 | 8969536 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8969344 | 8969419 | 8969344 | ID=MS.gene063746.t1.exon7;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8969344 | 8969419 | 8969344 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8968980 | 8969151 | 8968980 | ID=MS.gene063746.t1.exon8;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8968980 | 8969151 | 8968980 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8968098 | 8968198 | 8968098 | ID=MS.gene063746.t1.exon9;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8968098 | 8968198 | 8968098 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8967851 | 8968016 | 8967851 | ID=MS.gene063746.t1.exon10;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8967851 | 8968016 | 8967851 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8967635 | 8967692 | 8967635 | ID=MS.gene063746.t1.exon11;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8967635 | 8967692 | 8967635 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8967399 | 8967539 | 8967399 | ID=MS.gene063746.t1.exon12;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8967399 | 8967539 | 8967399 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8966507 | 8966845 | 8966507 | ID=MS.gene063746.t1.exon13;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8966507 | 8966845 | 8966507 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8966325 | 8966405 | 8966325 | ID=MS.gene063746.t1.exon14;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8966325 | 8966405 | 8966325 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8966054 | 8966119 | 8966054 | ID=MS.gene063746.t1.exon15;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8966054 | 8966119 | 8966054 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8965589 | 8965706 | 8965589 | ID=MS.gene063746.t1.exon16;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8965589 | 8965706 | 8965589 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8965021 | 8965150 | 8965021 | ID=MS.gene063746.t1.exon17;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8965021 | 8965150 | 8965021 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8964654 | 8964733 | 8964654 | ID=MS.gene063746.t1.exon18;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8964654 | 8964733 | 8964654 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8964224 | 8964382 | 8964224 | ID=MS.gene063746.t1.exon19;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8964224 | 8964382 | 8964224 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8963804 | 8964041 | 8963804 | ID=MS.gene063746.t1.exon20;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8963804 | 8964041 | 8963804 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8963589 | 8963728 | 8963589 | ID=MS.gene063746.t1.exon21;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8963589 | 8963728 | 8963589 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8963160 | 8963296 | 8963160 | ID=MS.gene063746.t1.exon22;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8963160 | 8963296 | 8963160 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| chr8.2 | exon | 8963000 | 8963069 | 8963000 | ID=MS.gene063746.t1.exon23;Parent=MS.gene063746.t1 |
| chr8.2 | CDS | 8963000 | 8963069 | 8963000 | ID=cds.MS.gene063746.t1;Parent=MS.gene063746.t1 |
| Gene Sequence |
| Protein sequence |
