Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064420.t1 | AFK36584.1 | 99.2 | 122 | 1 | 0 | 1 | 122 | 1 | 122 | 6.20E-38 | 167.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064420.t1 | P26585 | 63.6 | 121 | 43 | 1 | 1 | 121 | 1 | 120 | 3.1e-30 | 132.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064420.t1 | I3S988 | 95.1 | 122 | 6 | 0 | 1 | 122 | 1 | 122 | 4.5e-38 | 167.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064420.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064420 | MS.gene46264 | PPI |
| MS.gene064420 | MS.gene02572 | PPI |
| MS.gene013786 | MS.gene064420 | PPI |
| MS.gene064420 | MS.gene03201 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064420.t1 | MTR_3g115580 | 98.701 | 154 | 2 | 0 | 1 | 154 | 1 | 154 | 4.10e-102 | 289 |
| MS.gene064420.t1 | MTR_8g073345 | 60.432 | 139 | 46 | 5 | 5 | 143 | 3 | 132 | 7.82e-41 | 134 |
| MS.gene064420.t1 | MTR_5g024180 | 57.895 | 133 | 48 | 4 | 5 | 137 | 3 | 127 | 1.62e-37 | 125 |
| MS.gene064420.t1 | MTR_8g073345 | 60.150 | 133 | 44 | 5 | 5 | 137 | 3 | 126 | 2.28e-37 | 125 |
| MS.gene064420.t1 | MTR_7g068280 | 70.297 | 101 | 28 | 1 | 41 | 141 | 47 | 145 | 8.46e-36 | 122 |
| MS.gene064420.t1 | MTR_7g082820 | 63.855 | 83 | 29 | 1 | 34 | 116 | 2 | 83 | 1.59e-29 | 105 |
| MS.gene064420.t1 | MTR_1g115220 | 60.000 | 80 | 32 | 0 | 41 | 120 | 98 | 177 | 6.68e-27 | 100 |
| MS.gene064420.t1 | MTR_5g024180 | 57.778 | 90 | 34 | 2 | 51 | 137 | 2 | 90 | 6.35e-24 | 89.7 |
| MS.gene064420.t1 | MTR_4g094622 | 47.674 | 86 | 45 | 0 | 35 | 120 | 54 | 139 | 5.27e-23 | 89.0 |
| MS.gene064420.t1 | MTR_1g022345 | 46.667 | 75 | 39 | 1 | 41 | 115 | 554 | 627 | 1.42e-12 | 64.7 |
| MS.gene064420.t1 | MTR_8g099305 | 35.714 | 98 | 60 | 1 | 41 | 138 | 262 | 356 | 3.33e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064420.t1 | AT1G20693 | 66.013 | 153 | 41 | 4 | 1 | 153 | 1 | 142 | 9.56e-54 | 167 |
| MS.gene064420.t1 | AT1G20693 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.63e-47 | 151 |
| MS.gene064420.t1 | AT1G20693 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.68e-47 | 151 |
| MS.gene064420.t1 | AT1G20696 | 63.504 | 137 | 38 | 3 | 1 | 137 | 1 | 125 | 6.95e-46 | 147 |
| MS.gene064420.t1 | AT2G17560 | 54.483 | 145 | 54 | 4 | 1 | 144 | 1 | 134 | 1.87e-41 | 135 |
| MS.gene064420.t1 | AT2G17560 | 52.597 | 154 | 55 | 4 | 1 | 154 | 1 | 136 | 5.77e-41 | 134 |
| MS.gene064420.t1 | AT2G17560 | 52.597 | 154 | 55 | 4 | 1 | 154 | 1 | 136 | 5.77e-41 | 134 |
| MS.gene064420.t1 | AT1G20696 | 63.559 | 118 | 33 | 2 | 1 | 118 | 1 | 108 | 8.70e-41 | 134 |
| MS.gene064420.t1 | AT1G20696 | 60.800 | 125 | 39 | 2 | 1 | 125 | 1 | 115 | 1.01e-40 | 133 |
| MS.gene064420.t1 | AT3G51880 | 65.517 | 116 | 33 | 2 | 26 | 141 | 36 | 144 | 1.10e-39 | 132 |
| MS.gene064420.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.71e-39 | 132 |
| MS.gene064420.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.71e-39 | 132 |
| MS.gene064420.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.71e-39 | 132 |
| MS.gene064420.t1 | AT3G51880 | 69.388 | 98 | 25 | 1 | 40 | 137 | 48 | 140 | 2.00e-37 | 126 |
| MS.gene064420.t1 | AT1G20696 | 66.327 | 98 | 29 | 2 | 53 | 150 | 1 | 94 | 1.61e-33 | 114 |
| MS.gene064420.t1 | AT4G35570 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 1.92e-32 | 112 |
| MS.gene064420.t1 | AT4G35570 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 1.92e-32 | 112 |
| MS.gene064420.t1 | AT1G20696 | 64.706 | 85 | 28 | 1 | 53 | 137 | 1 | 83 | 1.84e-28 | 101 |
| MS.gene064420.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.40e-19 | 79.7 |
| MS.gene064420.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.40e-19 | 79.7 |
| MS.gene064420.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.40e-19 | 79.7 |
| MS.gene064420.t1 | AT2G34450 | 37.000 | 100 | 47 | 2 | 45 | 143 | 63 | 147 | 5.52e-18 | 75.9 |
| MS.gene064420.t1 | AT5G23420 | 46.739 | 92 | 41 | 2 | 26 | 110 | 89 | 179 | 1.32e-15 | 71.6 |
| MS.gene064420.t1 | AT4G23800 | 45.000 | 80 | 39 | 2 | 41 | 118 | 369 | 445 | 1.01e-11 | 62.0 |
| MS.gene064420.t1 | AT4G23800 | 45.000 | 80 | 39 | 2 | 41 | 118 | 375 | 451 | 1.02e-11 | 62.0 |
Find 43 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTCTCTTAGGCTTGTT+AGG | 0.179440 | 3.2:-91413968 | None:intergenic |
| TTTCTTGTTATATGCCTTCA+TGG | 0.203700 | 3.2:-91414646 | None:intergenic |
| TTACTTAGCATCGGCTTTCT+TGG | 0.250421 | 3.2:-91413680 | None:intergenic |
| CTTGGATTCACCCTTGGACT+TGG | 0.277403 | 3.2:-91413662 | None:intergenic |
| AAAGCACTTGGAGGTCTCTT+AGG | 0.302679 | 3.2:-91413977 | None:intergenic |
| TTAGGCTTGTTAGGGTCCTT+TGG | 0.339552 | 3.2:-91413959 | None:intergenic |
| TTTGGTTCCTTTCCCTTGGC+TGG | 0.339914 | 3.2:-91413941 | None:intergenic |
| GCAGACACAGCTTTGTTGTC+AGG | 0.342321 | 3.2:-91414352 | None:intergenic |
| GTCCTTTGGTTCCTTTCCCT+TGG | 0.359297 | 3.2:-91413945 | None:intergenic |
| GCTGTTGAGGAAGAAGAATC+TGG | 0.372128 | 3.2:+91414767 | MS.gene064420:CDS |
| TTGCAGGTGGGCAAAGCTGC+TGG | 0.380613 | 3.2:+91414451 | MS.gene064420:intron |
| GGCTTTCTTGGATTCACCCT+TGG | 0.397041 | 3.2:-91413668 | None:intergenic |
| GAAGGGCGCCGCCACTACTA+AGG | 0.439920 | 3.2:+91413907 | MS.gene064420:CDS |
| GCAAAGCTGCTGGAGCAAAA+TGG | 0.450601 | 3.2:+91414461 | MS.gene064420:CDS |
| GAAGGCATATAACAAGAAAC+AGG | 0.452913 | 3.2:+91414650 | MS.gene064420:CDS |
| GAGGTCTCTTAGGCTTGTTA+GGG | 0.458151 | 3.2:-91413967 | None:intergenic |
| TCTTCTTCCTCAACAGCAGC+TGG | 0.462822 | 3.2:-91414761 | None:intergenic |
| GGCGGCGCCCTTCTTATTCA+CGG | 0.463220 | 3.2:-91413897 | None:intergenic |
| CAGACACAGCTTTGTTGTCA+GGG | 0.494732 | 3.2:-91414351 | None:intergenic |
| ATGCAGCAAAAGCAGAGAAA+AGG | 0.511362 | 3.2:+91414604 | MS.gene064420:CDS |
| TGAAGGTCCAGCTGCTGTTG+AGG | 0.526952 | 3.2:+91414754 | MS.gene064420:CDS |
| TAGGCTTGCCGTGAATAAGA+AGG | 0.545546 | 3.2:+91413889 | MS.gene064420:intron |
| AAGGAAACCAGCCAAGGGAA+AGG | 0.549929 | 3.2:+91413934 | MS.gene064420:CDS |
| TGTGATTGTTGTCAGGCTGA+AGG | 0.555256 | 3.2:+91414737 | MS.gene064420:intron |
| GGATTGAACTTACTTAGCAT+CGG | 0.556269 | 3.2:-91413689 | None:intergenic |
| AGCCAAGGGAAAGGAACCAA+AGG | 0.561691 | 3.2:+91413943 | MS.gene064420:CDS |
| CTGTTGAGGAAGAAGAATCT+GGG | 0.568023 | 3.2:+91414768 | MS.gene064420:CDS |
| TTTCCTTCCGCCCTTAGTAG+TGG | 0.570851 | 3.2:-91413918 | None:intergenic |
| AAGGGCGCCGCCACTACTAA+GGG | 0.576298 | 3.2:+91413908 | MS.gene064420:CDS |
| CATGAAAGGAGCCAAGTCCA+AGG | 0.590256 | 3.2:+91413651 | None:intergenic |
| GGGCGGAAGGAAACCAGCCA+AGG | 0.596398 | 3.2:+91413928 | MS.gene064420:CDS |
| GGCGGAAGGAAACCAGCCAA+GGG | 0.601621 | 3.2:+91413929 | MS.gene064420:CDS |
| TGAAGTGCATGATGAGAATG+AGG | 0.606285 | 3.2:+91414802 | MS.gene064420:CDS |
| CCTTCCGCCCTTAGTAGTGG+CGG | 0.610128 | 3.2:-91413915 | None:intergenic |
| CCGCCACTACTAAGGGCGGA+AGG | 0.610867 | 3.2:+91413915 | MS.gene064420:CDS |
| AGGCTTGCCGTGAATAAGAA+GGG | 0.612713 | 3.2:+91413890 | MS.gene064420:intron |
| AGAATATGAGAAAACCATGA+AGG | 0.619628 | 3.2:+91414632 | MS.gene064420:CDS |
| TGAGAATGAGGATGATGATG+AGG | 0.623282 | 3.2:+91414814 | MS.gene064420:CDS |
| AATGAGGATGATGATGAGGA+TGG | 0.627725 | 3.2:+91414818 | MS.gene064420:CDS |
| GGCGCCGCCACTACTAAGGG+CGG | 0.628082 | 3.2:+91413911 | MS.gene064420:CDS |
| ATGAAAGGAGCCAAGTCCAA+GGG | 0.636209 | 3.2:+91413652 | MS.gene064420:CDS |
| AGCAAAAGCAGAGAAAAGGA+AGG | 0.642820 | 3.2:+91414608 | MS.gene064420:CDS |
| TGATGAGGATGGCAGTGAAG+AGG | 0.697028 | 3.2:+91414829 | MS.gene064420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATTCAATTATAATAAT+TGG | - | chr3.2:91414123-91414142 | None:intergenic | 10.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | - | chr3.2:91413713-91413732 | None:intergenic | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | + | chr3.2:91414502-91414521 | MS.gene064420:intron | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | + | chr3.2:91413866-91413885 | MS.gene064420:intron | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | + | chr3.2:91414286-91414305 | MS.gene064420:intron | 20.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | + | chr3.2:91414297-91414316 | MS.gene064420:intron | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | + | chr3.2:91414730-91414749 | MS.gene064420:intron | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | + | chr3.2:91413759-91413778 | MS.gene064420:intron | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | + | chr3.2:91414690-91414709 | MS.gene064420:intron | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | + | chr3.2:91414689-91414708 | MS.gene064420:intron | 25.0% |
| ! | TTTGTTGAATTTCACTTTGT+AGG | + | chr3.2:91414872-91414891 | MS.gene064420:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | + | chr3.2:91413820-91413839 | MS.gene064420:intron | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | + | chr3.2:91413870-91413889 | MS.gene064420:intron | 25.0% |
| AGAATATGAGAAAACCATGA+AGG | + | chr3.2:91414632-91414651 | MS.gene064420:CDS | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | - | chr3.2:91413730-91413749 | None:intergenic | 30.0% | |
| ATAAAAATGTCAAAGTCCCA+CGG | - | chr3.2:91414250-91414269 | None:intergenic | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | + | chr3.2:91414296-91414315 | MS.gene064420:intron | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | + | chr3.2:91413758-91413777 | MS.gene064420:intron | 30.0% | |
| TAAATGCAAATTGGGTAACT+AGG | + | chr3.2:91414698-91414717 | MS.gene064420:intron | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | - | chr3.2:91414405-91414424 | None:intergenic | 30.0% | |
| ! | CATCTGTATATGAATTTTGC+AGG | + | chr3.2:91414435-91414454 | MS.gene064420:intron | 30.0% |
| ! | TGTATATGAATTTTGCAGGT+GGG | + | chr3.2:91414439-91414458 | MS.gene064420:intron | 30.0% |
| ! | TTTCTTGTTATATGCCTTCA+TGG | - | chr3.2:91414649-91414668 | None:intergenic | 30.0% |
| !! | ATGAAAACGAAAAAAGCACT+TGG | - | chr3.2:91413992-91414011 | None:intergenic | 30.0% |
| ATATGCTGTGATTGAACGTT+TGG | + | chr3.2:91414552-91414571 | MS.gene064420:intron | 35.0% | |
| CGTTCAATCACAGCATATAA+TGG | - | chr3.2:91414550-91414569 | None:intergenic | 35.0% | |
| GCATATAACAAGAAACAGGT+CGG | + | chr3.2:91414654-91414673 | MS.gene064420:intron | 35.0% | |
| GGATTGAACTTACTTAGCAT+CGG | - | chr3.2:91413692-91413711 | None:intergenic | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | + | chr3.2:91414569-91414588 | MS.gene064420:intron | 35.0% | |
| TAAGGCCAGTAAAACAACAA+CGG | - | chr3.2:91414387-91414406 | None:intergenic | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | + | chr3.2:91414921-91414940 | MS.gene064420:intron | 35.0% | |
| ! | CAGTCATAACTGTTTTCACA+CGG | - | chr3.2:91414213-91414232 | None:intergenic | 35.0% |
| ! | CTGTATATGAATTTTGCAGG+TGG | + | chr3.2:91414438-91414457 | MS.gene064420:intron | 35.0% |
| ! | GAAGGCATATAACAAGAAAC+AGG | + | chr3.2:91414650-91414669 | MS.gene064420:CDS | 35.0% |
| ! | GTCTTTATAGGGAGGATTTT+AGG | + | chr3.2:91414308-91414327 | MS.gene064420:intron | 35.0% |
| !! | AAAACGAAAAAAGCACTTGG+AGG | - | chr3.2:91413989-91414008 | None:intergenic | 35.0% |
| !! | CGTTTTATTCGCTTTCGATT+TGG | + | chr3.2:91413737-91413756 | MS.gene064420:intron | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | + | chr3.2:91414324-91414343 | MS.gene064420:CDS | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | + | chr3.2:91414379-91414398 | MS.gene064420:intron | 35.0% |
| AGCAAAAGCAGAGAAAAGGA+AGG | + | chr3.2:91414608-91414627 | MS.gene064420:CDS | 40.0% | |
| ATGCAGCAAAAGCAGAGAAA+AGG | + | chr3.2:91414604-91414623 | MS.gene064420:CDS | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | + | chr3.2:91414768-91414787 | MS.gene064420:CDS | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | + | chr3.2:91414802-91414821 | MS.gene064420:CDS | 40.0% | |
| TTCCTTATGTTTCATGCAGG+AGG | + | chr3.2:91414924-91414943 | MS.gene064420:intron | 40.0% | |
| TTTGTGTGGTCTTTATAGGG+AGG | + | chr3.2:91414300-91414319 | MS.gene064420:intron | 40.0% | |
| ! | AATGAGGATGATGATGAGGA+TGG | + | chr3.2:91414818-91414837 | MS.gene064420:CDS | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | - | chr3.2:91413796-91413815 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | - | chr3.2:91414202-91414221 | None:intergenic | 40.0% |
| ! | TGAGAATGAGGATGATGATG+AGG | + | chr3.2:91414814-91414833 | MS.gene064420:CDS | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | - | chr3.2:91413683-91413702 | None:intergenic | 40.0% |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | - | chr3.2:91414603-91414622 | None:intergenic | 40.0% |
| AGGCTTGCCGTGAATAAGAA+GGG | + | chr3.2:91413890-91413909 | MS.gene064420:intron | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | + | chr3.2:91413652-91413671 | MS.gene064420:CDS | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | - | chr3.2:91414929-91414948 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | + | chr3.2:91414927-91414946 | MS.gene064420:intron | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | + | chr3.2:91414767-91414786 | MS.gene064420:CDS | 45.0% | |
| GTGATTGAACGTTTGGTCTC+TGG | + | chr3.2:91414559-91414578 | MS.gene064420:intron | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | + | chr3.2:91413889-91413908 | MS.gene064420:intron | 45.0% | |
| TGCTGAGTTATGATGACCGT+GGG | + | chr3.2:91414231-91414250 | MS.gene064420:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | + | chr3.2:91414737-91414756 | MS.gene064420:intron | 45.0% | |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | - | chr3.2:91413980-91413999 | None:intergenic | 45.0% |
| !! | CAGACACAGCTTTGTTGTCA+GGG | - | chr3.2:91414354-91414373 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | - | chr3.2:91413970-91413989 | None:intergenic | 45.0% |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | - | chr3.2:91413962-91413981 | None:intergenic | 45.0% |
| AAGGAAACCAGCCAAGGGAA+AGG | + | chr3.2:91413934-91413953 | MS.gene064420:CDS | 50.0% | |
| AGCCAAGGGAAAGGAACCAA+AGG | + | chr3.2:91413943-91413962 | MS.gene064420:CDS | 50.0% | |
| CTGCTGAGTTATGATGACCG+TGG | + | chr3.2:91414230-91414249 | MS.gene064420:intron | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | - | chr3.2:91413665-91413684 | None:intergenic | 50.0% | |
| GCAAAGCTGCTGGAGCAAAA+TGG | + | chr3.2:91414461-91414480 | MS.gene064420:CDS | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | - | chr3.2:91413671-91413690 | None:intergenic | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | - | chr3.2:91414764-91414783 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | + | chr3.2:91414829-91414848 | MS.gene064420:CDS | 50.0% | |
| TTTCCTTCCGCCCTTAGTAG+TGG | - | chr3.2:91413921-91413940 | None:intergenic | 50.0% | |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | - | chr3.2:91413971-91413990 | None:intergenic | 50.0% |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | - | chr3.2:91413948-91413967 | None:intergenic | 50.0% |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | - | chr3.2:91413944-91413963 | None:intergenic | 50.0% |
| !! | GCAGACACAGCTTTGTTGTC+AGG | - | chr3.2:91414355-91414374 | None:intergenic | 50.0% |
| TGAAGGTCCAGCTGCTGTTG+AGG | + | chr3.2:91414754-91414773 | MS.gene064420:CDS | 55.0% | |
| CCTTCCGCCCTTAGTAGTGG+CGG | - | chr3.2:91413918-91413937 | None:intergenic | 60.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | + | chr3.2:91413929-91413948 | MS.gene064420:CDS | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | - | chr3.2:91413900-91413919 | None:intergenic | 60.0% | |
| TTGCAGGTGGGCAAAGCTGC+TGG | + | chr3.2:91414451-91414470 | MS.gene064420:intron | 60.0% | |
| !! | AAGGGCGCCGCCACTACTAA+GGG | + | chr3.2:91413908-91413927 | MS.gene064420:CDS | 60.0% |
| CCGCCACTACTAAGGGCGGA+AGG | + | chr3.2:91413915-91413934 | MS.gene064420:CDS | 65.0% | |
| GGGCGGAAGGAAACCAGCCA+AGG | + | chr3.2:91413928-91413947 | MS.gene064420:CDS | 65.0% | |
| !! | GAAGGGCGCCGCCACTACTA+AGG | + | chr3.2:91413907-91413926 | MS.gene064420:CDS | 65.0% |
| GGCGCCGCCACTACTAAGGG+CGG | + | chr3.2:91413911-91413930 | MS.gene064420:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 91413652 | 91414960 | 91413652 | ID=MS.gene064420 |
| chr3.2 | mRNA | 91413652 | 91414960 | 91413652 | ID=MS.gene064420.t1;Parent=MS.gene064420 |
| chr3.2 | exon | 91413652 | 91413698 | 91413652 | ID=MS.gene064420.t1.exon1;Parent=MS.gene064420.t1 |
| chr3.2 | CDS | 91413652 | 91413698 | 91413652 | ID=cds.MS.gene064420.t1;Parent=MS.gene064420.t1 |
| chr3.2 | exon | 91413892 | 91414011 | 91413892 | ID=MS.gene064420.t1.exon2;Parent=MS.gene064420.t1 |
| chr3.2 | CDS | 91413892 | 91414011 | 91413892 | ID=cds.MS.gene064420.t1;Parent=MS.gene064420.t1 |
| chr3.2 | exon | 91414318 | 91414375 | 91414318 | ID=MS.gene064420.t1.exon3;Parent=MS.gene064420.t1 |
| chr3.2 | CDS | 91414318 | 91414375 | 91414318 | ID=cds.MS.gene064420.t1;Parent=MS.gene064420.t1 |
| chr3.2 | exon | 91414457 | 91414501 | 91414457 | ID=MS.gene064420.t1.exon4;Parent=MS.gene064420.t1 |
| chr3.2 | CDS | 91414457 | 91414501 | 91414457 | ID=cds.MS.gene064420.t1;Parent=MS.gene064420.t1 |
| chr3.2 | exon | 91414591 | 91414671 | 91414591 | ID=MS.gene064420.t1.exon5;Parent=MS.gene064420.t1 |
| chr3.2 | CDS | 91414591 | 91414671 | 91414591 | ID=cds.MS.gene064420.t1;Parent=MS.gene064420.t1 |
| chr3.2 | exon | 91414752 | 91414850 | 91414752 | ID=MS.gene064420.t1.exon6;Parent=MS.gene064420.t1 |
| chr3.2 | CDS | 91414752 | 91414850 | 91414752 | ID=cds.MS.gene064420.t1;Parent=MS.gene064420.t1 |
| chr3.2 | exon | 91414943 | 91414960 | 91414943 | ID=MS.gene064420.t1.exon7;Parent=MS.gene064420.t1 |
| chr3.2 | CDS | 91414943 | 91414960 | 91414943 | ID=cds.MS.gene064420.t1;Parent=MS.gene064420.t1 |
| Gene Sequence |
| Protein sequence |
