Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064483.t1 | XP_003590457.1 | 98.2 | 338 | 6 | 0 | 1 | 338 | 1 | 338 | 2.90E-197 | 697.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064483.t1 | Q96G74 | 27.2 | 151 | 103 | 2 | 171 | 314 | 188 | 338 | 5.8e-13 | 76.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064483.t1 | G7IA91 | 98.2 | 338 | 6 | 0 | 1 | 338 | 1 | 338 | 2.1e-197 | 697.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064483 | MS.gene005908 | PPI |
| MS.gene34071 | MS.gene064483 | PPI |
| MS.gene99991 | MS.gene064483 | PPI |
| MS.gene064483 | MS.gene34070 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064483.t1 | MTR_1g063900 | 98.225 | 338 | 6 | 0 | 1 | 338 | 1 | 338 | 0.0 | 695 |
| MS.gene064483.t1 | MTR_1g063900 | 97.786 | 271 | 6 | 0 | 1 | 271 | 1 | 271 | 0.0 | 553 |
| MS.gene064483.t1 | MTR_1g094650 | 50.000 | 354 | 146 | 6 | 8 | 334 | 10 | 359 | 5.02e-109 | 322 |
| MS.gene064483.t1 | MTR_3g081150 | 54.595 | 185 | 82 | 1 | 150 | 334 | 47 | 229 | 8.48e-75 | 230 |
| MS.gene064483.t1 | MTR_6g033065 | 51.053 | 190 | 88 | 2 | 147 | 334 | 44 | 230 | 2.89e-74 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064483.t1 | AT5G03330 | 54.754 | 305 | 123 | 5 | 45 | 334 | 50 | 354 | 5.49e-107 | 317 |
| MS.gene064483.t1 | AT5G03330 | 54.754 | 305 | 123 | 5 | 45 | 334 | 50 | 354 | 5.49e-107 | 317 |
| MS.gene064483.t1 | AT5G04250 | 45.014 | 351 | 170 | 6 | 1 | 334 | 1 | 345 | 7.04e-98 | 293 |
| MS.gene064483.t1 | AT5G04250 | 45.014 | 351 | 170 | 6 | 1 | 334 | 1 | 345 | 7.04e-98 | 293 |
| MS.gene064483.t1 | AT5G03330 | 53.986 | 276 | 112 | 5 | 45 | 305 | 50 | 325 | 1.33e-87 | 267 |
| MS.gene064483.t1 | AT5G03330 | 53.986 | 276 | 112 | 5 | 45 | 305 | 50 | 325 | 1.33e-87 | 267 |
| MS.gene064483.t1 | AT3G02070 | 54.737 | 190 | 81 | 2 | 147 | 334 | 33 | 219 | 1.27e-76 | 234 |
| MS.gene064483.t1 | AT3G02070 | 54.737 | 190 | 81 | 2 | 147 | 334 | 33 | 219 | 1.27e-76 | 234 |
| MS.gene064483.t1 | AT3G22260 | 51.351 | 185 | 88 | 1 | 150 | 334 | 58 | 240 | 2.22e-64 | 204 |
| MS.gene064483.t1 | AT3G22260 | 50.000 | 190 | 88 | 2 | 150 | 334 | 58 | 245 | 8.91e-62 | 197 |
| MS.gene064483.t1 | AT3G22260 | 50.000 | 190 | 88 | 2 | 150 | 334 | 58 | 245 | 8.91e-62 | 197 |
| MS.gene064483.t1 | AT3G22260 | 50.000 | 190 | 88 | 2 | 150 | 334 | 58 | 245 | 8.91e-62 | 197 |
| MS.gene064483.t1 | AT3G22260 | 50.000 | 190 | 88 | 2 | 150 | 334 | 58 | 245 | 8.91e-62 | 197 |
| MS.gene064483.t1 | AT3G22260 | 50.000 | 190 | 88 | 2 | 150 | 334 | 58 | 245 | 8.91e-62 | 197 |
| MS.gene064483.t1 | AT2G39320 | 40.984 | 122 | 52 | 2 | 198 | 318 | 2 | 104 | 1.18e-22 | 94.0 |
Find 57 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGAATATAATGAATATT+TGG | 0.203978 | 1.4:-52439948 | MS.gene064483:CDS |
| AAGAAAATCTTACCTCCTTT+TGG | 0.253179 | 1.4:+52439355 | None:intergenic |
| GTCAGATCATGAAAGGCTTC+TGG | 0.347146 | 1.4:-52440598 | MS.gene064483:CDS |
| CATATGAAGGCTCAGAAGTA+TGG | 0.356593 | 1.4:+52441948 | None:intergenic |
| ACATATCCTTCATATATATC+AGG | 0.376898 | 1.4:+52439974 | None:intergenic |
| CATACCTCCTTGAGGATAGA+TGG | 0.380354 | 1.4:+52438937 | None:intergenic |
| CGTTACAGTCCTGGATACTA+TGG | 0.389704 | 1.4:-52442154 | MS.gene064483:CDS |
| CTTCTGAGCCTTCATATGAT+TGG | 0.400034 | 1.4:-52441943 | MS.gene064483:CDS |
| TCTTCAAGCCGCGGCAGATT+CGG | 0.416318 | 1.4:-52439787 | MS.gene064483:intron |
| CAAATATTCATTATATTCCA+TGG | 0.419565 | 1.4:+52439949 | None:intergenic |
| CTCACAAACTTGTGGTGATC+AGG | 0.420249 | 1.4:+52440129 | None:intergenic |
| ATTACAGTTATATGACTTTG+TGG | 0.422681 | 1.4:-52440357 | MS.gene064483:CDS |
| TGATCTCGTCATTCTCTACT+TGG | 0.423582 | 1.4:+52442053 | None:intergenic |
| TACTTTCAGAAGTATCATAA+TGG | 0.431762 | 1.4:+52442077 | None:intergenic |
| GTCGATCCTCGTTACAGTCC+TGG | 0.448390 | 1.4:-52442163 | MS.gene064483:CDS |
| ACAAGGTGATGGTAATTGTC+AGG | 0.460550 | 1.4:-52440324 | MS.gene064483:intron |
| GACATAACTCAACATGATAC+TGG | 0.462268 | 1.4:-52442130 | MS.gene064483:CDS |
| CCGATGATGAACTATTGTTC+AGG | 0.465370 | 1.4:-52441911 | MS.gene064483:CDS |
| TGAAACTAGGAGTGGTGAAT+GGG | 0.478508 | 1.4:-52439823 | MS.gene064483:intron |
| CTCTCAATTTCATCATCAAA+TGG | 0.487943 | 1.4:+52441683 | None:intergenic |
| GACGTTGCTTCATCAATAGA+AGG | 0.512372 | 1.4:+52440618 | None:intergenic |
| GAAGCTAAACTTACAGGAAT+GGG | 0.517910 | 1.4:+52441641 | None:intergenic |
| TGAGAATTCAAGTTATTCAC+AGG | 0.521482 | 1.4:-52441987 | MS.gene064483:CDS |
| CGAAGCTAAACTTACAGGAA+TGG | 0.522374 | 1.4:+52441640 | None:intergenic |
| ATGAAACTAGGAGTGGTGAA+TGG | 0.525646 | 1.4:-52439824 | MS.gene064483:intron |
| TGAAGTAGAGGGAGTCTCAT+CGG | 0.525785 | 1.4:-52441723 | MS.gene064483:CDS |
| GCATTCAGATGTTGTTCAGT+GGG | 0.529867 | 1.4:-52442203 | MS.gene064483:CDS |
| AATATTTGGATAAGATGTCT+AGG | 0.530005 | 1.4:-52439934 | MS.gene064483:intron |
| TCTCATCCTGATATATATGA+AGG | 0.537747 | 1.4:-52439980 | MS.gene064483:CDS |
| AGTCAAGAAAGAAGAAAAGA+TGG | 0.538536 | 1.4:-52438676 | MS.gene064483:CDS |
| TTGTAGTCCTAGTGAAGTAG+AGG | 0.540675 | 1.4:-52441735 | MS.gene064483:CDS |
| GTTATACAACTGATCAGATA+AGG | 0.550657 | 1.4:+52440155 | None:intergenic |
| AAATATTCATTATATTCCAT+GGG | 0.552117 | 1.4:+52439950 | None:intergenic |
| GTGTTATGCCAATCATATGA+AGG | 0.562233 | 1.4:+52441935 | None:intergenic |
| GTTATGTCACCATAGTATCC+AGG | 0.570278 | 1.4:+52442145 | None:intergenic |
| GAGCATAAAGTACAAGGTGA+TGG | 0.591615 | 1.4:-52440335 | MS.gene064483:CDS |
| AAGCAACGTCAGATCATGAA+AGG | 0.595247 | 1.4:-52440605 | MS.gene064483:CDS |
| TCTTTCTCCAGTATGGTGTG+AGG | 0.597080 | 1.4:-52439441 | MS.gene064483:intron |
| CAAGAAAGAAGAAAAGATGG+TGG | 0.598589 | 1.4:-52438673 | MS.gene064483:CDS |
| TACAACTCCATCTATCCTCA+AGG | 0.603599 | 1.4:-52438944 | MS.gene064483:CDS |
| CCTGAACAATAGTTCATCAT+CGG | 0.608320 | 1.4:+52441911 | None:intergenic |
| AGCATTCAGATGTTGTTCAG+TGG | 0.611379 | 1.4:-52442204 | MS.gene064483:CDS |
| GAGACGAAAAGTTGTGAACC+AGG | 0.617334 | 1.4:-52440109 | MS.gene064483:intron |
| CATTTGATGATGAAATTGAG+AGG | 0.617407 | 1.4:-52441682 | MS.gene064483:CDS |
| GAGACTCCCTCTACTTCACT+AGG | 0.617455 | 1.4:+52441728 | None:intergenic |
| GGTCATGGTTATGCACATGA+AGG | 0.618845 | 1.4:-52441788 | MS.gene064483:CDS |
| GAAACTAGGAGTGGTGAATG+GGG | 0.624351 | 1.4:-52439822 | MS.gene064483:intron |
| TTTGTGGAGCATAAAGTACA+AGG | 0.635922 | 1.4:-52440341 | MS.gene064483:CDS |
| ATATGAAGGATATGTTCCCA+TGG | 0.636647 | 1.4:-52439966 | MS.gene064483:CDS |
| TGTAGTCCTAGTGAAGTAGA+GGG | 0.639828 | 1.4:-52441734 | MS.gene064483:CDS |
| ATCATGAAAGGCTTCTGGAG+AGG | 0.644141 | 1.4:-52440593 | MS.gene064483:intron |
| ATGATGAACTATTGTTCAGG+AGG | 0.648419 | 1.4:-52441908 | MS.gene064483:intron |
| AACACATACCGAATCTGCCG+CGG | 0.655390 | 1.4:+52439779 | None:intergenic |
| TCATGTGACTCTTCAAGCCG+CGG | 0.658571 | 1.4:-52439796 | MS.gene064483:CDS |
| CATTCAGATGTTGTTCAGTG+GGG | 0.679592 | 1.4:-52442202 | MS.gene064483:CDS |
| AACTCCATCTATCCTCAAGG+AGG | 0.722572 | 1.4:-52438941 | MS.gene064483:intron |
| TAGTATCCAGGACTGTAACG+AGG | 0.730734 | 1.4:+52442157 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTCTTATAAATAATATT+TGG | - | chr1.4:52441612-52441631 | MS.gene064483:intron | 10.0% |
| !! | ATTCATTGTTTATAAAATTT+AGG | - | chr1.4:52440400-52440419 | MS.gene064483:intron | 10.0% |
| !! | AAATATTCATTATATTCCAT+GGG | + | chr1.4:52440922-52440941 | None:intergenic | 15.0% |
| !! | ATTGTTTATAAAATTTAGGT+TGG | - | chr1.4:52440404-52440423 | MS.gene064483:intron | 15.0% |
| !!! | ATACATTATCAGTTTTAATT+TGG | + | chr1.4:52442100-52442119 | None:intergenic | 15.0% |
| !!! | ATTAGAAAGGTATATAAATA+AGG | - | chr1.4:52439959-52439978 | MS.gene064483:CDS | 15.0% |
| !!! | TTAGAAAGGTATATAAATAA+GGG | - | chr1.4:52439960-52439979 | MS.gene064483:CDS | 15.0% |
| !!! | TTTTACAAAAATTTCATACT+TGG | - | chr1.4:52441959-52441978 | MS.gene064483:CDS | 15.0% |
| !!! | TTTTTGTACATTATTATCAT+GGG | - | chr1.4:52440831-52440850 | MS.gene064483:intron | 15.0% |
| !! | AAAGAGAAGAGAAAAATAAT+TGG | + | chr1.4:52441413-52441432 | None:intergenic | 20.0% |
| !! | AACCAAAAGTAAATAATATG+GGG | + | chr1.4:52440379-52440398 | None:intergenic | 20.0% |
| !! | AAGAAAGAAAAAGAATGTTA+CGG | + | chr1.4:52439809-52439828 | None:intergenic | 20.0% |
| !! | ATGAAAGAAAAAGTTGTTAT+TGG | + | chr1.4:52441020-52441039 | None:intergenic | 20.0% |
| !! | CAAATATTCATTATATTCCA+TGG | + | chr1.4:52440923-52440942 | None:intergenic | 20.0% |
| !! | CATGGAATATAATGAATATT+TGG | - | chr1.4:52440921-52440940 | MS.gene064483:intron | 20.0% |
| !! | GAACCAAAAGTAAATAATAT+GGG | + | chr1.4:52440380-52440399 | None:intergenic | 20.0% |
| !! | GAGAAATATAGTATATGATT+TGG | - | chr1.4:52442125-52442144 | MS.gene064483:CDS | 20.0% |
| !! | TAATCTGTTTAACAATATAG+TGG | + | chr1.4:52440496-52440515 | None:intergenic | 20.0% |
| !! | TACAATGAATAGAATAGTAA+TGG | + | chr1.4:52441159-52441178 | None:intergenic | 20.0% |
| !! | TGAACCAAAAGTAAATAATA+TGG | + | chr1.4:52440381-52440400 | None:intergenic | 20.0% |
| !! | TGAATCAATAAATATGTACT+CGG | - | chr1.4:52439264-52439283 | MS.gene064483:intron | 20.0% |
| !! | TTGAAAAACCATTTCTATAT+TGG | + | chr1.4:52441726-52441745 | None:intergenic | 20.0% |
| !!! | AGTGATTTTCATAAGTTTTT+GGG | - | chr1.4:52441891-52441910 | MS.gene064483:intron | 20.0% |
| !!! | ATTAGAAAGTTCATTTCTTT+TGG | - | chr1.4:52440154-52440173 | MS.gene064483:CDS | 20.0% |
| !!! | ATTTATCTTTTTGCATAATC+TGG | - | chr1.4:52439030-52439049 | MS.gene064483:intron | 20.0% |
| !!! | CTTTTTGTACATTATTATCA+TGG | - | chr1.4:52440830-52440849 | MS.gene064483:intron | 20.0% |
| !!! | GATTTATTCAGTACATTTTA+TGG | - | chr1.4:52439999-52440018 | MS.gene064483:intron | 20.0% |
| !!! | TATAGATTTGTTTGAACTTT+TGG | - | chr1.4:52441763-52441782 | MS.gene064483:CDS | 20.0% |
| !!! | TATTTTTGTTAAGATAGTGT+TGG | - | chr1.4:52439334-52439353 | MS.gene064483:intron | 20.0% |
| !!! | TTTATATTAGCTTTTAACCA+AGG | + | chr1.4:52440324-52440343 | None:intergenic | 20.0% |
| !!! | TTTGTTATAATATTTGAGCT+TGG | - | chr1.4:52441346-52441365 | MS.gene064483:intron | 20.0% |
| ! | AAACTAACTCATCTAACTAA+TGG | + | chr1.4:52439929-52439948 | None:intergenic | 25.0% |
| ! | AAATAAGGGAAAATCAGATT+AGG | - | chr1.4:52439974-52439993 | MS.gene064483:CDS | 25.0% |
| ! | AAATACTAAAACTGAGTGTT+TGG | + | chr1.4:52439853-52439872 | None:intergenic | 25.0% |
| ! | AACAATATAGTGGCTTAATT+TGG | + | chr1.4:52440486-52440505 | None:intergenic | 25.0% |
| ! | AACATAGTGAAAAAGTTGTT+TGG | + | chr1.4:52439313-52439332 | None:intergenic | 25.0% |
| ! | AAGCACAGGTTTAAATTATT+TGG | - | chr1.4:52442023-52442042 | MS.gene064483:CDS | 25.0% |
| ! | AATATTTGGATAAGATGTCT+AGG | - | chr1.4:52440935-52440954 | MS.gene064483:intron | 25.0% |
| ! | ACATATCCTTCATATATATC+AGG | + | chr1.4:52440898-52440917 | None:intergenic | 25.0% |
| ! | ACCAAAAGTAAATAATATGG+GGG | + | chr1.4:52440378-52440397 | None:intergenic | 25.0% |
| ! | AGATTTCAAGAAACAATTTG+AGG | + | chr1.4:52441573-52441592 | None:intergenic | 25.0% |
| ! | ATTACAGTTATATGACTTTG+TGG | - | chr1.4:52440512-52440531 | MS.gene064483:intron | 25.0% |
| ! | GGAAATATAGAAGATACTAA+GGG | - | chr1.4:52439562-52439581 | MS.gene064483:intron | 25.0% |
| ! | GGAGAAGGAAAATATAATTT+GGG | + | chr1.4:52441288-52441307 | None:intergenic | 25.0% |
| ! | GGTACAAAATAGCAATTAAA+AGG | + | chr1.4:52439292-52439311 | None:intergenic | 25.0% |
| ! | TGAAATAATTGATTGAGAGT+AGG | + | chr1.4:52440092-52440111 | None:intergenic | 25.0% |
| ! | TGGAAATATAGAAGATACTA+AGG | - | chr1.4:52439561-52439580 | MS.gene064483:intron | 25.0% |
| ! | TGGAGAAGGAAAATATAATT+TGG | + | chr1.4:52441289-52441308 | None:intergenic | 25.0% |
| ! | TTTGTTAGAAAGGATTAGAA+AGG | - | chr1.4:52439946-52439965 | MS.gene064483:CDS | 25.0% |
| !! | AATAAGAATTTTACATGTGC+AGG | - | chr1.4:52439060-52439079 | MS.gene064483:intron | 25.0% |
| !! | ATTTGTGATGACTTCTTTTA+AGG | - | chr1.4:52441453-52441472 | MS.gene064483:intron | 25.0% |
| !! | CAGTGATTTTCATAAGTTTT+TGG | - | chr1.4:52441890-52441909 | MS.gene064483:intron | 25.0% |
| !! | CTTTCATTTTGAATGAAACT+AGG | - | chr1.4:52441033-52441052 | MS.gene064483:intron | 25.0% |
| !! | GAGCTCATATTGATTAATTT+AGG | - | chr1.4:52441813-52441832 | MS.gene064483:intron | 25.0% |
| !! | TCGTTATATGTATTTTATGG+CGG | - | chr1.4:52439880-52439899 | MS.gene064483:intron | 25.0% |
| !! | TTAAAGTTACTTTACACATG+TGG | + | chr1.4:52440612-52440631 | None:intergenic | 25.0% |
| !!! | GTGTCGTTATATGTATTTTA+TGG | - | chr1.4:52439877-52439896 | MS.gene064483:intron | 25.0% |
| !!! | TACTTTCAGAAGTATCATAA+TGG | + | chr1.4:52438795-52438814 | None:intergenic | 25.0% |
| !!! | TCATGACTTTTCCATTTTTT+AGG | - | chr1.4:52441791-52441810 | MS.gene064483:intron | 25.0% |
| AAAAGAGATCCATCATAAAG+TGG | - | chr1.4:52440034-52440053 | MS.gene064483:intron | 30.0% | |
| AGACAAAGTGAAAATTGAAG+AGG | - | chr1.4:52439666-52439685 | MS.gene064483:intron | 30.0% | |
| AGTCAAGAAAGAAGAAAAGA+TGG | - | chr1.4:52442193-52442212 | MS.gene064483:CDS | 30.0% | |
| ATAATTTGGGCACAATTGAA+AGG | + | chr1.4:52441275-52441294 | None:intergenic | 30.0% | |
| ATATGATAAATCCTCACTTC+AGG | + | chr1.4:52441550-52441569 | None:intergenic | 30.0% | |
| ATCTGAACCTTGAAAACATT+TGG | - | chr1.4:52441589-52441608 | MS.gene064483:intron | 30.0% | |
| CAATATGAGCTCCTAAAAAA+TGG | + | chr1.4:52441805-52441824 | None:intergenic | 30.0% | |
| CTCTCAATTTCATCATCAAA+TGG | + | chr1.4:52439189-52439208 | None:intergenic | 30.0% | |
| CTTATTGGAAATCCATGAAA+TGG | + | chr1.4:52441689-52441708 | None:intergenic | 30.0% | |
| GGAACAAAAATTTGGAAAAG+TGG | + | chr1.4:52440588-52440607 | None:intergenic | 30.0% | |
| GGTATTAGTCACAAGTAAAA+AGG | + | chr1.4:52441392-52441411 | None:intergenic | 30.0% | |
| GTTATACAACTGATCAGATA+AGG | + | chr1.4:52440717-52440736 | None:intergenic | 30.0% | |
| TAGCACATTCCAAAAATCAA+TGG | - | chr1.4:52440221-52440240 | MS.gene064483:intron | 30.0% | |
| TCTAGAAGCCAATATAGAAA+TGG | - | chr1.4:52441715-52441734 | MS.gene064483:CDS | 30.0% | |
| TCTCATCCTGATATATATGA+AGG | - | chr1.4:52440889-52440908 | MS.gene064483:intron | 30.0% | |
| TTCATGGATTTCCAATAAGT+AGG | - | chr1.4:52441690-52441709 | MS.gene064483:CDS | 30.0% | |
| ! | AAGAAAATCTTACCTCCTTT+TGG | + | chr1.4:52441517-52441536 | None:intergenic | 30.0% |
| ! | AGAATGTCCAAATGTTTTCA+AGG | + | chr1.4:52441599-52441618 | None:intergenic | 30.0% |
| ! | ATTTTGAATGAAACTAGGAG+TGG | - | chr1.4:52441038-52441057 | MS.gene064483:intron | 30.0% |
| ! | CTTTAGCAAAACTTTTGTCT+GGG | - | chr1.4:52441204-52441223 | MS.gene064483:intron | 30.0% |
| ! | GTAAGATTTTCTTAGTAGTG+AGG | - | chr1.4:52441524-52441543 | MS.gene064483:intron | 30.0% |
| ! | TCCCCCATATTATTTACTTT+TGG | - | chr1.4:52440374-52440393 | MS.gene064483:intron | 30.0% |
| ! | TCTTTAGCAAAACTTTTGTC+TGG | - | chr1.4:52441203-52441222 | MS.gene064483:intron | 30.0% |
| ! | TGAGAATTCAAGTTATTCAC+AGG | - | chr1.4:52438882-52438901 | MS.gene064483:intron | 30.0% |
| ! | TTTCAAAGCATTTATTCCTG+TGG | - | chr1.4:52439444-52439463 | MS.gene064483:intron | 30.0% |
| !! | CATTTGATGATGAAATTGAG+AGG | - | chr1.4:52439187-52439206 | MS.gene064483:intron | 30.0% |
| !! | GATGAGTTAGTTTGTTAGAA+AGG | - | chr1.4:52439936-52439955 | MS.gene064483:CDS | 30.0% |
| !! | TGATACAAAGTGGTCATTTT+TGG | - | chr1.4:52439527-52439546 | MS.gene064483:intron | 30.0% |
| !!! | GGAATTTCTCCATTGATTTT+TGG | + | chr1.4:52440233-52440252 | None:intergenic | 30.0% |
| !!! | TTTTAATTTGGCCAAACACA+GGG | + | chr1.4:52442088-52442107 | None:intergenic | 30.0% |
| AAAAATACCATACCTCCTTG+AGG | + | chr1.4:52441943-52441962 | None:intergenic | 35.0% | |
| AAATAAAGACATAACCCGCT+AGG | + | chr1.4:52440793-52440812 | None:intergenic | 35.0% | |
| AAGAAGCTGCATTCTTTCAT+TGG | + | chr1.4:52439490-52439509 | None:intergenic | 35.0% | |
| ACATCAAATTTCCCTGTGTT+TGG | - | chr1.4:52442074-52442093 | MS.gene064483:CDS | 35.0% | |
| ATATGAAGGATATGTTCCCA+TGG | - | chr1.4:52440903-52440922 | MS.gene064483:intron | 35.0% | |
| ATCATAAAGTGGAAACCCTT+GGG | - | chr1.4:52440045-52440064 | MS.gene064483:intron | 35.0% | |
| ATGATGAACTATTGTTCAGG+AGG | - | chr1.4:52438961-52438980 | MS.gene064483:CDS | 35.0% | |
| ATGTCACTGAATGAAACTGT+AGG | - | chr1.4:52441649-52441668 | MS.gene064483:intron | 35.0% | |
| ATTGATTGAGAGTAGGAGAA+AGG | + | chr1.4:52440085-52440104 | None:intergenic | 35.0% | |
| CAAGAAAGAAGAAAAGATGG+TGG | - | chr1.4:52442196-52442215 | MS.gene064483:CDS | 35.0% | |
| CATGTGGAGGAACAAAAATT+TGG | + | chr1.4:52440596-52440615 | None:intergenic | 35.0% | |
| CCTGAACAATAGTTCATCAT+CGG | + | chr1.4:52438961-52438980 | None:intergenic | 35.0% | |
| CTTTCTTCATTCTTGCACAA+CGG | - | chr1.4:52439822-52439841 | MS.gene064483:intron | 35.0% | |
| GAAGCTAAACTTACAGGAAT+GGG | + | chr1.4:52439231-52439250 | None:intergenic | 35.0% | |
| GACATAACTCAACATGATAC+TGG | - | chr1.4:52438739-52438758 | MS.gene064483:intron | 35.0% | |
| GCTTCTAGATTCCTACTTAT+TGG | + | chr1.4:52441704-52441723 | None:intergenic | 35.0% | |
| GGATTCTTCAAATGTTGCAA+TGG | - | chr1.4:52441318-52441337 | MS.gene064483:intron | 35.0% | |
| GTCATAAGCATATTGTTCCT+TGG | - | chr1.4:52440304-52440323 | MS.gene064483:intron | 35.0% | |
| GTGTTATGCCAATCATATGA+AGG | + | chr1.4:52438937-52438956 | None:intergenic | 35.0% | |
| TAAGGGAAAATCAGATTAGG+AGG | - | chr1.4:52439977-52439996 | MS.gene064483:CDS | 35.0% | |
| TCATTGGTGTATGTGAAGAT+TGG | + | chr1.4:52439474-52439493 | None:intergenic | 35.0% | |
| TTGAAGAATCCAGCAGAAAA+TGG | + | chr1.4:52441309-52441328 | None:intergenic | 35.0% | |
| TTTGTGGAGCATAAAGTACA+AGG | - | chr1.4:52440528-52440547 | MS.gene064483:intron | 35.0% | |
| ! | AAGTTACTTTACACATGTGG+AGG | + | chr1.4:52440609-52440628 | None:intergenic | 35.0% |
| ! | AATTTTACATGTGCAGGTCA+TGG | - | chr1.4:52439066-52439085 | MS.gene064483:intron | 35.0% |
| !! | TTTCATAAGTTTTTGGGCTG+AGG | - | chr1.4:52441897-52441916 | MS.gene064483:intron | 35.0% |
| !!! | ACAAAGTGGTCATTTTTGGA+GGG | - | chr1.4:52439531-52439550 | MS.gene064483:intron | 35.0% |
| !!! | AGTTTTGAGAAACCAAAAGG+AGG | - | chr1.4:52441502-52441521 | MS.gene064483:intron | 35.0% |
| !!! | CCTAGTTTTGAGAAACCAAA+AGG | - | chr1.4:52441499-52441518 | MS.gene064483:intron | 35.0% |
| !!! | CCTTTTGGTTTCTCAAAACT+AGG | + | chr1.4:52441502-52441521 | None:intergenic | 35.0% |
| !!! | GTTTTAATTTGGCCAAACAC+AGG | + | chr1.4:52442089-52442108 | None:intergenic | 35.0% |
| !!! | TACAAAGTGGTCATTTTTGG+AGG | - | chr1.4:52439530-52439549 | MS.gene064483:intron | 35.0% |
| AAACAAGCTCAACAAAGCAC+AGG | - | chr1.4:52442009-52442028 | MS.gene064483:CDS | 40.0% | |
| AACCACGAAGCTAAACTTAC+AGG | + | chr1.4:52439237-52439256 | None:intergenic | 40.0% | |
| AAGCAACGTCAGATCATGAA+AGG | - | chr1.4:52440264-52440283 | MS.gene064483:intron | 40.0% | |
| AATCCAGCAGAAAATGGAGA+AGG | + | chr1.4:52441303-52441322 | None:intergenic | 40.0% | |
| AGCATTCAGATGTTGTTCAG+TGG | - | chr1.4:52438665-52438684 | MS.gene064483:CDS | 40.0% | |
| ATGAAACTAGGAGTGGTGAA+TGG | - | chr1.4:52441045-52441064 | MS.gene064483:intron | 40.0% | |
| ATGACCACTTTGTATCAGAG+TGG | + | chr1.4:52439524-52439543 | None:intergenic | 40.0% | |
| CAAATATCCTCACACCATAC+TGG | + | chr1.4:52441438-52441457 | None:intergenic | 40.0% | |
| CAAGGGTTTCCACTTTATGA+TGG | + | chr1.4:52440046-52440065 | None:intergenic | 40.0% | |
| CAGTATCTGCTTCCATTTCA+TGG | - | chr1.4:52441674-52441693 | MS.gene064483:CDS | 40.0% | |
| CATATGAAGGCTCAGAAGTA+TGG | + | chr1.4:52438924-52438943 | None:intergenic | 40.0% | |
| CATCATAAAGTGGAAACCCT+TGG | - | chr1.4:52440044-52440063 | MS.gene064483:intron | 40.0% | |
| CATTCAGATGTTGTTCAGTG+GGG | - | chr1.4:52438667-52438686 | MS.gene064483:CDS | 40.0% | |
| CCGATGATGAACTATTGTTC+AGG | - | chr1.4:52438958-52438977 | MS.gene064483:CDS | 40.0% | |
| CGAAGCTAAACTTACAGGAA+TGG | + | chr1.4:52439232-52439251 | None:intergenic | 40.0% | |
| CTTCTGAGCCTTCATATGAT+TGG | - | chr1.4:52438926-52438945 | MS.gene064483:intron | 40.0% | |
| GACGTTGCTTCATCAATAGA+AGG | + | chr1.4:52440254-52440273 | None:intergenic | 40.0% | |
| GACTCGCTTGAAGTTATATC+TGG | + | chr1.4:52442177-52442196 | None:intergenic | 40.0% | |
| GAGCATAAAGTACAAGGTGA+TGG | - | chr1.4:52440534-52440553 | MS.gene064483:intron | 40.0% | |
| GCATTCAGATGTTGTTCAGT+GGG | - | chr1.4:52438666-52438685 | MS.gene064483:CDS | 40.0% | |
| GTTATGTCACCATAGTATCC+AGG | + | chr1.4:52438727-52438746 | None:intergenic | 40.0% | |
| TACAACTCCATCTATCCTCA+AGG | - | chr1.4:52441925-52441944 | MS.gene064483:CDS | 40.0% | |
| TCATAAAGTGGAAACCCTTG+GGG | - | chr1.4:52440046-52440065 | MS.gene064483:intron | 40.0% | |
| TCTCTTCTCTTTCTCCAGTA+TGG | - | chr1.4:52441421-52441440 | MS.gene064483:intron | 40.0% | |
| TCTTCCACTCTGATACAAAG+TGG | - | chr1.4:52439517-52439536 | MS.gene064483:intron | 40.0% | |
| TGAAACTAGGAGTGGTGAAT+GGG | - | chr1.4:52441046-52441065 | MS.gene064483:intron | 40.0% | |
| TGAGAAACATGCTGAAGACA+AGG | - | chr1.4:52439725-52439744 | MS.gene064483:intron | 40.0% | |
| TGATCTCGTCATTCTCTACT+TGG | + | chr1.4:52438819-52438838 | None:intergenic | 40.0% | |
| TGTAGTCCTAGTGAAGTAGA+GGG | - | chr1.4:52439135-52439154 | MS.gene064483:intron | 40.0% | |
| TTGTAGTCCTAGTGAAGTAG+AGG | - | chr1.4:52439134-52439153 | MS.gene064483:intron | 40.0% | |
| ! | ACAAGGTGATGGTAATTGTC+AGG | - | chr1.4:52440545-52440564 | MS.gene064483:intron | 40.0% |
| ! | CTTTTCGTCTCACAAACTTG+TGG | + | chr1.4:52440751-52440770 | None:intergenic | 40.0% |
| ! | TTCCTGTAAGTTTAGCTTCG+TGG | - | chr1.4:52439232-52439251 | MS.gene064483:intron | 40.0% |
| ! | TTTCCTTCTCCATTTTCTGC+TGG | - | chr1.4:52441297-52441316 | MS.gene064483:intron | 40.0% |
| ! | TTTGGAATGTGCTACACAAG+AGG | + | chr1.4:52440215-52440234 | None:intergenic | 40.0% |
| !! | ACTATTGTTCAGGAGGTATC+TGG | - | chr1.4:52438968-52438987 | MS.gene064483:CDS | 40.0% |
| !!! | AAAGTGGTCATTTTTGGAGG+GGG | - | chr1.4:52439533-52439552 | MS.gene064483:intron | 40.0% |
| !!! | CAAAGTGGTCATTTTTGGAG+GGG | - | chr1.4:52439532-52439551 | MS.gene064483:intron | 40.0% |
| AACTCCATCTATCCTCAAGG+AGG | - | chr1.4:52441928-52441947 | MS.gene064483:CDS | 45.0% | |
| CATACCTCCTTGAGGATAGA+TGG | + | chr1.4:52441935-52441954 | None:intergenic | 45.0% | |
| CATCTATCCTCAAGGAGGTA+TGG | - | chr1.4:52441933-52441952 | MS.gene064483:CDS | 45.0% | |
| CGTTACAGTCCTGGATACTA+TGG | - | chr1.4:52438715-52438734 | MS.gene064483:intron | 45.0% | |
| CTCACAAACTTGTGGTGATC+AGG | + | chr1.4:52440743-52440762 | None:intergenic | 45.0% | |
| GAAACATGCTGAAGACAAGG+TGG | - | chr1.4:52439728-52439747 | MS.gene064483:intron | 45.0% | |
| GAAACTAGGAGTGGTGAATG+GGG | - | chr1.4:52441047-52441066 | MS.gene064483:intron | 45.0% | |
| GAGACGAAAAGTTGTGAACC+AGG | - | chr1.4:52440760-52440779 | MS.gene064483:intron | 45.0% | |
| GATAAGGCTCGAAACTGATG+AGG | + | chr1.4:52440701-52440720 | None:intergenic | 45.0% | |
| GGTCATGGTTATGCACATGA+AGG | - | chr1.4:52439081-52439100 | MS.gene064483:intron | 45.0% | |
| GTCAGATCATGAAAGGCTTC+TGG | - | chr1.4:52440271-52440290 | MS.gene064483:intron | 45.0% | |
| GTGTGCACACACATACATCA+TGG | + | chr1.4:52440352-52440371 | None:intergenic | 45.0% | |
| TAGTATCCAGGACTGTAACG+AGG | + | chr1.4:52438715-52438734 | None:intergenic | 45.0% | |
| TCTGGGTAAGTTTCGTTGCA+TGG | - | chr1.4:52441221-52441240 | MS.gene064483:intron | 45.0% | |
| TCTTTCTCCAGTATGGTGTG+AGG | - | chr1.4:52441428-52441447 | MS.gene064483:intron | 45.0% | |
| TGAAGTAGAGGGAGTCTCAT+CGG | - | chr1.4:52439146-52439165 | MS.gene064483:intron | 45.0% | |
| ! | ATCATGAAAGGCTTCTGGAG+AGG | - | chr1.4:52440276-52440295 | MS.gene064483:intron | 45.0% |
| !! | TGTGAAGATTGGTTTGCCAC+AGG | + | chr1.4:52439463-52439482 | None:intergenic | 45.0% |
| AACACATACCGAATCTGCCG+CGG | + | chr1.4:52441093-52441112 | None:intergenic | 50.0% | |
| AACCAGGTATGTTGCCTAGC+GGG | - | chr1.4:52440776-52440795 | MS.gene064483:intron | 50.0% | |
| GAACCAGGTATGTTGCCTAG+CGG | - | chr1.4:52440775-52440794 | MS.gene064483:intron | 50.0% | |
| GAGACTCCCTCTACTTCACT+AGG | + | chr1.4:52439144-52439163 | None:intergenic | 50.0% | |
| GAGAGTAGGAGAAAGGTCAG+AGG | + | chr1.4:52440078-52440097 | None:intergenic | 50.0% | |
| GGCGGTTCATTTCTGTCAGT+TGG | - | chr1.4:52439898-52439917 | MS.gene064483:intron | 50.0% | |
| TAGTAGTGAGGCCTGAAGTG+AGG | - | chr1.4:52441536-52441555 | MS.gene064483:intron | 50.0% | |
| TCATGTGACTCTTCAAGCCG+CGG | - | chr1.4:52441073-52441092 | MS.gene064483:intron | 50.0% | |
| !! | CATTTTTGGAGGGGGTGAAG+TGG | - | chr1.4:52439541-52439560 | MS.gene064483:intron | 50.0% |
| AACCCGCTAGGCAACATACC+TGG | + | chr1.4:52440781-52440800 | None:intergenic | 55.0% | |
| GTCGATCCTCGTTACAGTCC+TGG | - | chr1.4:52438706-52438725 | MS.gene064483:intron | 55.0% | |
| TCTTCAAGCCGCGGCAGATT+CGG | - | chr1.4:52441082-52441101 | MS.gene064483:intron | 55.0% | |
| GTCAGAGGTCTCTGCCCCAA+GGG | + | chr1.4:52440063-52440082 | None:intergenic | 60.0% | |
| GGTCAGAGGTCTCTGCCCCA+AGG | + | chr1.4:52440064-52440083 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 52438652 | 52442239 | 52438652 | ID=MS.gene064483 |
| chr1.4 | mRNA | 52438652 | 52442239 | 52438652 | ID=MS.gene064483.t1;Parent=MS.gene064483 |
| chr1.4 | exon | 52441909 | 52442239 | 52441909 | ID=MS.gene064483.t1.exon1;Parent=MS.gene064483.t1 |
| chr1.4 | CDS | 52441909 | 52442239 | 52441909 | ID=cds.MS.gene064483.t1;Parent=MS.gene064483.t1 |
| chr1.4 | exon | 52441655 | 52441809 | 52441655 | ID=MS.gene064483.t1.exon2;Parent=MS.gene064483.t1 |
| chr1.4 | CDS | 52441655 | 52441809 | 52441655 | ID=cds.MS.gene064483.t1;Parent=MS.gene064483.t1 |
| chr1.4 | exon | 52440594 | 52440667 | 52440594 | ID=MS.gene064483.t1.exon3;Parent=MS.gene064483.t1 |
| chr1.4 | CDS | 52440594 | 52440667 | 52440594 | ID=cds.MS.gene064483.t1;Parent=MS.gene064483.t1 |
| chr1.4 | exon | 52440325 | 52440379 | 52440325 | ID=MS.gene064483.t1.exon4;Parent=MS.gene064483.t1 |
| chr1.4 | CDS | 52440325 | 52440379 | 52440325 | ID=cds.MS.gene064483.t1;Parent=MS.gene064483.t1 |
| chr1.4 | exon | 52440110 | 52440184 | 52440110 | ID=MS.gene064483.t1.exon5;Parent=MS.gene064483.t1 |
| chr1.4 | CDS | 52440110 | 52440184 | 52440110 | ID=cds.MS.gene064483.t1;Parent=MS.gene064483.t1 |
| chr1.4 | exon | 52439935 | 52440008 | 52439935 | ID=MS.gene064483.t1.exon6;Parent=MS.gene064483.t1 |
| chr1.4 | CDS | 52439935 | 52440008 | 52439935 | ID=cds.MS.gene064483.t1;Parent=MS.gene064483.t1 |
| chr1.4 | exon | 52439788 | 52439836 | 52439788 | ID=MS.gene064483.t1.exon7;Parent=MS.gene064483.t1 |
| chr1.4 | CDS | 52439788 | 52439836 | 52439788 | ID=cds.MS.gene064483.t1;Parent=MS.gene064483.t1 |
| chr1.4 | exon | 52439368 | 52439452 | 52439368 | ID=MS.gene064483.t1.exon8;Parent=MS.gene064483.t1 |
| chr1.4 | CDS | 52439368 | 52439452 | 52439368 | ID=cds.MS.gene064483.t1;Parent=MS.gene064483.t1 |
| chr1.4 | exon | 52438942 | 52438998 | 52438942 | ID=MS.gene064483.t1.exon9;Parent=MS.gene064483.t1 |
| chr1.4 | CDS | 52438942 | 52438998 | 52438942 | ID=cds.MS.gene064483.t1;Parent=MS.gene064483.t1 |
| chr1.4 | exon | 52438652 | 52438713 | 52438652 | ID=MS.gene064483.t1.exon10;Parent=MS.gene064483.t1 |
| chr1.4 | CDS | 52438652 | 52438713 | 52438652 | ID=cds.MS.gene064483.t1;Parent=MS.gene064483.t1 |
| Gene Sequence |
| Protein sequence |
