Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064801.t1 | XP_003603845.1 | 95.1 | 428 | 21 | 0 | 1 | 428 | 1 | 428 | 9.50E-238 | 832.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064801.t1 | P50134 | 57.1 | 415 | 177 | 1 | 10 | 424 | 18 | 431 | 5.2e-136 | 485.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064801.t1 | G7J5X8 | 95.1 | 428 | 21 | 0 | 1 | 428 | 1 | 428 | 6.8e-238 | 832.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055251 | MS.gene064801 | 0.810114 | 1.35E-50 | -1.69E-46 |
| MS.gene060076 | MS.gene064801 | 0.816697 | 4.84E-52 | -1.69E-46 |
| MS.gene061044 | MS.gene064801 | 0.827588 | 1.44E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064801.t1 | MTR_3g114870 | 95.093 | 428 | 21 | 0 | 1 | 428 | 1 | 428 | 0.0 | 843 |
| MS.gene064801.t1 | MTR_3g114890 | 72.986 | 422 | 83 | 4 | 1 | 422 | 38 | 428 | 0.0 | 609 |
| MS.gene064801.t1 | MTR_5g022700 | 25.148 | 338 | 229 | 9 | 84 | 407 | 121 | 448 | 3.31e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064801.t1 | AT5G11880 | 25.581 | 344 | 220 | 9 | 84 | 407 | 127 | 454 | 2.84e-14 | 75.1 |
| MS.gene064801.t1 | AT3G14390 | 24.709 | 344 | 223 | 8 | 84 | 407 | 122 | 449 | 4.97e-14 | 74.3 |
Find 96 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTAGCGTTCTTGATTTA+AGG | 0.113656 | 3.4:-98301988 | MS.gene064801:CDS |
| TGGGCTTCAAGTTGGTAATT+TGG | 0.149477 | 3.4:+98302125 | None:intergenic |
| TTGGCTTGTGTTTCCAAATA+TGG | 0.194285 | 3.4:-98300994 | MS.gene064801:CDS |
| GTTGTATAAGCACCCATATT+TGG | 0.221677 | 3.4:+98300981 | None:intergenic |
| AACTTCTTTGGCCAATAATA+TGG | 0.232030 | 3.4:+98301469 | None:intergenic |
| GGTGCTTATACAACTTCTTC+TGG | 0.243851 | 3.4:-98300972 | MS.gene064801:CDS |
| CGGAGGAGGAGCTCGCATTT+TGG | 0.257621 | 3.4:+98301665 | None:intergenic |
| GATGAGGATCTTGTTGTTAT+TGG | 0.264779 | 3.4:-98301314 | MS.gene064801:CDS |
| GTGCCTATAAGTGAAATATT+AGG | 0.265004 | 3.4:+98301890 | None:intergenic |
| AACCCTAATATTTCACTTAT+AGG | 0.265351 | 3.4:-98301893 | MS.gene064801:CDS |
| AAAATGAAAATTCTTGATAT+TGG | 0.275753 | 3.4:-98301416 | MS.gene064801:CDS |
| GGGCTTCAAGTTGGTAATTT+GGG | 0.276695 | 3.4:+98302126 | None:intergenic |
| TTACACTTAACGGCATAAAA+AGG | 0.284731 | 3.4:+98301914 | None:intergenic |
| ATTGGTGGTGGATTCACTTC+TGG | 0.295664 | 3.4:-98301398 | MS.gene064801:CDS |
| ACGTTAGCAACAAAAGTTAT+TGG | 0.304090 | 3.4:-98301257 | MS.gene064801:CDS |
| TGGATTGATGATGGAATTTA+CGG | 0.308997 | 3.4:-98301203 | MS.gene064801:CDS |
| CGTTAGCAACAAAAGTTATT+GGG | 0.309406 | 3.4:-98301256 | MS.gene064801:CDS |
| CTTAAATCAAGAACGCTAAA+TGG | 0.327499 | 3.4:+98301989 | None:intergenic |
| GTAGCTCGGGAACTTCATTT+AGG | 0.329117 | 3.4:+98301582 | None:intergenic |
| ACGACTGGCGCAGTCGAAAT+TGG | 0.333325 | 3.4:+98301850 | None:intergenic |
| TTACCACGGAGCCATATTAT+TGG | 0.335936 | 3.4:-98301480 | MS.gene064801:CDS |
| TCGTGTCTCGGTCTCAAATA+TGG | 0.352609 | 3.4:-98301611 | MS.gene064801:CDS |
| TTGTGATCCATTTGTTCATA+AGG | 0.365764 | 3.4:+98301954 | None:intergenic |
| CAATCGTTCACCTCAAGTTC+AGG | 0.366769 | 3.4:+98301014 | None:intergenic |
| TCTCTCCATGCAACATTCTC+AGG | 0.369816 | 3.4:+98301113 | None:intergenic |
| TGCTAAAACAGATTCAATTT+CGG | 0.376996 | 3.4:+98301826 | None:intergenic |
| GAATGCAGCTTCATCAAATC+TGG | 0.392102 | 3.4:+98301373 | None:intergenic |
| GGAGCTAAACCCATTGAAAT+TGG | 0.394395 | 3.4:+98300947 | None:intergenic |
| TGCCTATAAGTGAAATATTA+GGG | 0.397312 | 3.4:+98301891 | None:intergenic |
| AGATTCAATTTCGGCACGAC+TGG | 0.397432 | 3.4:+98301835 | None:intergenic |
| ATTTAGCGTTCTTGATTTAA+GGG | 0.400399 | 3.4:-98301987 | MS.gene064801:CDS |
| AATATTAGGGTTACACTTAA+CGG | 0.401795 | 3.4:+98301904 | None:intergenic |
| AATTTGGGATTGAGATTCTT+CGG | 0.411334 | 3.4:+98302141 | None:intergenic |
| TGTTCAACTCCAACTCTTGT+CGG | 0.415484 | 3.4:-98300900 | MS.gene064801:CDS |
| CTTGTTGTTATTGGTGAACC+TGG | 0.430037 | 3.4:-98301305 | MS.gene064801:CDS |
| TCTTCTGGGACCAATTTCAA+TGG | 0.431701 | 3.4:-98300957 | MS.gene064801:CDS |
| AAATGCATGCCACTTAGGTT+TGG | 0.433043 | 3.4:-98301143 | MS.gene064801:CDS |
| TGGTCGTTACTTTGCGGAAA+CGG | 0.440992 | 3.4:-98301285 | MS.gene064801:CDS |
| CGCGCTCCACTGTCTTCCTC+CGG | 0.449143 | 3.4:+98301635 | None:intergenic |
| CTTCTGGGACCAATTTCAAT+GGG | 0.452939 | 3.4:-98300956 | MS.gene064801:CDS |
| TGGCTTGTGTTTCCAAATAT+GGG | 0.454466 | 3.4:-98300993 | MS.gene064801:CDS |
| TGTCTTCCTCCGGTTTAATA+CGG | 0.456200 | 3.4:+98301645 | None:intergenic |
| AGTGGAGCGCGTTCGTGTCT+CGG | 0.462681 | 3.4:-98301623 | MS.gene064801:CDS |
| TGAACCTGGTCGTTACTTTG+CGG | 0.463370 | 3.4:-98301291 | MS.gene064801:CDS |
| TTTGAAACAGCTTCACAACT+TGG | 0.466293 | 3.4:-98301446 | MS.gene064801:CDS |
| TTGTCAAATGCATGCCACTT+AGG | 0.471188 | 3.4:-98301148 | MS.gene064801:CDS |
| GTGCTTATACAACTTCTTCT+GGG | 0.471995 | 3.4:-98300971 | MS.gene064801:CDS |
| CACTTGTGATTCAGTTGATA+CGG | 0.472833 | 3.4:-98301057 | MS.gene064801:CDS |
| AAAATTCTTGATATTGGTGG+TGG | 0.474122 | 3.4:-98301410 | MS.gene064801:CDS |
| CTCAAAGCTGCTGATGTGGC+TGG | 0.475343 | 3.4:-98301560 | MS.gene064801:CDS |
| GTGGCTGGACTTAAAGTAAC+CGG | 0.477454 | 3.4:-98301545 | MS.gene064801:CDS |
| TAATTGACCTTATGAACAAA+TGG | 0.478395 | 3.4:-98301961 | MS.gene064801:CDS |
| GTTCAACTCCAACTCTTGTC+GGG | 0.485449 | 3.4:-98300899 | MS.gene064801:CDS |
| GATTCTTCGGTTACTAGTGT+AGG | 0.490410 | 3.4:+98302154 | None:intergenic |
| GTTACAACTTTCGACTGTGT+TGG | 0.493514 | 3.4:-98301716 | MS.gene064801:CDS |
| TCCTAAAACTTATGCTTCAA+CGG | 0.496112 | 3.4:-98301090 | MS.gene064801:CDS |
| CGGCTCCTCCACTGCCTATG+TGG | 0.498519 | 3.4:+98301513 | None:intergenic |
| ATCAGCAGCTTTGAGTAGCT+CGG | 0.500239 | 3.4:+98301568 | None:intergenic |
| ATGTGTGACTCTGATTTACA+CGG | 0.500289 | 3.4:+98301767 | None:intergenic |
| GCTCCTCCTCCGTATTAAAC+CGG | 0.513408 | 3.4:-98301654 | MS.gene064801:CDS |
| ATGAAAATTCTTGATATTGG+TGG | 0.524512 | 3.4:-98301413 | MS.gene064801:CDS |
| GTTTCTTTCCACATAGGCAG+TGG | 0.526020 | 3.4:-98301521 | MS.gene064801:CDS |
| CTGAACTTGAGGTGAACGAT+TGG | 0.531047 | 3.4:-98301013 | MS.gene064801:CDS |
| GAGGTGAAATGAGAGAGTAT+TGG | 0.532786 | 3.4:-98301223 | MS.gene064801:CDS |
| TCAGCAGCTTTGAGTAGCTC+GGG | 0.534584 | 3.4:+98301569 | None:intergenic |
| AGTTAACGCCCGACAAGAGT+TGG | 0.541910 | 3.4:+98300891 | None:intergenic |
| AACATTTACACCAACACTTG+CGG | 0.545840 | 3.4:+98301736 | None:intergenic |
| AGAGAGTATTGGATTGATGA+TGG | 0.547610 | 3.4:-98301212 | MS.gene064801:CDS |
| TTGGCGTAAATGATTCTGTC+GGG | 0.548085 | 3.4:+98301791 | None:intergenic |
| GTTGGCGTAAATGATTCTGT+CGG | 0.557662 | 3.4:+98301790 | None:intergenic |
| CCTCCGGTTTAATACGGAGG+AGG | 0.565365 | 3.4:+98301651 | None:intergenic |
| TGACTCTGATTTACACGGGT+TGG | 0.567636 | 3.4:+98301772 | None:intergenic |
| ATGGATCACAAAACTTCCTA+CGG | 0.580901 | 3.4:-98301942 | MS.gene064801:CDS |
| GCTACTCAAAGCTGCTGATG+TGG | 0.584654 | 3.4:-98301564 | MS.gene064801:CDS |
| TCTTTCCACATAGGCAGTGG+AGG | 0.589805 | 3.4:-98301518 | MS.gene064801:CDS |
| GTATGAGTTACCTGAACTTG+AGG | 0.598744 | 3.4:-98301024 | MS.gene064801:CDS |
| GCCTATGTGGAAAGAAACGC+CGG | 0.604972 | 3.4:+98301526 | None:intergenic |
| AAGTCGAAAAGATCAAAAGA+TGG | 0.607083 | 3.4:-98301691 | MS.gene064801:CDS |
| ATAAAGTACGCCGCAAGTGT+TGG | 0.614012 | 3.4:-98301746 | MS.gene064801:CDS |
| AACACATTTCGGAAATGATG+AGG | 0.619194 | 3.4:-98301330 | MS.gene064801:CDS |
| CGTATCAACTGAATCACAAG+TGG | 0.619653 | 3.4:+98301058 | None:intergenic |
| CTTCCTCCGGTTTAATACGG+AGG | 0.619904 | 3.4:+98301648 | None:intergenic |
| GTTTCCGCAAAGTAACGACC+AGG | 0.632820 | 3.4:+98301287 | None:intergenic |
| GTTATTGGGAAACGTGTGAG+AGG | 0.635688 | 3.4:-98301242 | MS.gene064801:CDS |
| ACCGGCGTTTCTTTCCACAT+AGG | 0.637950 | 3.4:-98301527 | MS.gene064801:CDS |
| TGTGTGACTCTGATTTACAC+GGG | 0.640151 | 3.4:+98301768 | None:intergenic |
| CCTCCTCCGTATTAAACCGG+AGG | 0.647197 | 3.4:-98301651 | MS.gene064801:CDS |
| AGTGACAACTTTGTCCTCAG+AGG | 0.649939 | 3.4:-98302071 | MS.gene064801:CDS |
| CAAAACCTGAGAATGTTGCA+TGG | 0.652437 | 3.4:-98301118 | MS.gene064801:CDS |
| ATAGGCACACTAGCTTCACT+CGG | 0.663733 | 3.4:-98301875 | MS.gene064801:CDS |
| ATTAAACCGGAGGAAGACAG+TGG | 0.674532 | 3.4:-98301641 | MS.gene064801:CDS |
| GCCGACGCAAAAGCTTACCA+CGG | 0.696059 | 3.4:-98301494 | MS.gene064801:CDS |
| AATGTAAATATGCTTAGCTG+TGG | 0.700126 | 3.4:+98300926 | None:intergenic |
| ATCTGAGATAGTAACCTCTG+AGG | 0.725873 | 3.4:+98302057 | None:intergenic |
| TGGCCAATAATATGGCTCCG+TGG | 0.745513 | 3.4:+98301477 | None:intergenic |
| GTATCAACTGAATCACAAGT+GGG | 0.753190 | 3.4:+98301059 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAAATTCTTGATAT+TGG | - | chr3.4:98301634-98301653 | MS.gene064801:CDS | 15.0% |
| !!! | ATATCAAGAATTTTCATTTT+TGG | + | chr3.4:98301634-98301653 | None:intergenic | 15.0% |
| ! | AACCCTAATATTTCACTTAT+AGG | - | chr3.4:98301157-98301176 | MS.gene064801:CDS | 25.0% |
| ! | AATATTAGGGTTACACTTAA+CGG | + | chr3.4:98301149-98301168 | None:intergenic | 25.0% |
| ! | ATGAAAATTCTTGATATTGG+TGG | - | chr3.4:98301637-98301656 | MS.gene064801:CDS | 25.0% |
| ! | ATTTAGCGTTCTTGATTTAA+GGG | - | chr3.4:98301063-98301082 | MS.gene064801:CDS | 25.0% |
| ! | GATGCAATAAAAACACATTT+CGG | - | chr3.4:98301709-98301728 | MS.gene064801:CDS | 25.0% |
| ! | TAATTGACCTTATGAACAAA+TGG | - | chr3.4:98301089-98301108 | MS.gene064801:CDS | 25.0% |
| ! | TGCCTATAAGTGAAATATTA+GGG | + | chr3.4:98301162-98301181 | None:intergenic | 25.0% |
| ! | TGCTAAAACAGATTCAATTT+CGG | + | chr3.4:98301227-98301246 | None:intergenic | 25.0% |
| AAAATTCTTGATATTGGTGG+TGG | - | chr3.4:98301640-98301659 | MS.gene064801:CDS | 30.0% | |
| AACTTCTTTGGCCAATAATA+TGG | + | chr3.4:98301584-98301603 | None:intergenic | 30.0% | |
| AAGTCGAAAAGATCAAAAGA+TGG | - | chr3.4:98301359-98301378 | MS.gene064801:CDS | 30.0% | |
| AATGTAAATATGCTTAGCTG+TGG | + | chr3.4:98302127-98302146 | None:intergenic | 30.0% | |
| ACGTTAGCAACAAAAGTTAT+TGG | - | chr3.4:98301793-98301812 | MS.gene064801:CDS | 30.0% | |
| CATTTAGCGTTCTTGATTTA+AGG | - | chr3.4:98301062-98301081 | MS.gene064801:CDS | 30.0% | |
| CGTTAGCAACAAAAGTTATT+GGG | - | chr3.4:98301794-98301813 | MS.gene064801:CDS | 30.0% | |
| CTTAAATCAAGAACGCTAAA+TGG | + | chr3.4:98301064-98301083 | None:intergenic | 30.0% | |
| GTGCCTATAAGTGAAATATT+AGG | + | chr3.4:98301163-98301182 | None:intergenic | 30.0% | |
| TCCTAAAACTTATGCTTCAA+CGG | - | chr3.4:98301960-98301979 | MS.gene064801:CDS | 30.0% | |
| TTACACTTAACGGCATAAAA+AGG | + | chr3.4:98301139-98301158 | None:intergenic | 30.0% | |
| TTGTGATCCATTTGTTCATA+AGG | + | chr3.4:98301099-98301118 | None:intergenic | 30.0% | |
| ! | AATTTGGGATTGAGATTCTT+CGG | + | chr3.4:98300912-98300931 | None:intergenic | 30.0% |
| ! | AGCTGTTTCAAAAACTTCTT+TGG | + | chr3.4:98301596-98301615 | None:intergenic | 30.0% |
| !! | TGGATTGATGATGGAATTTA+CGG | - | chr3.4:98301847-98301866 | MS.gene064801:CDS | 30.0% |
| !!! | AGCTGGTTTGGTTTTAATAA+TGG | + | chr3.4:98301029-98301048 | None:intergenic | 30.0% |
| !!! | ATTGAATCTGTTTTAGCACT+TGG | - | chr3.4:98301229-98301248 | MS.gene064801:CDS | 30.0% |
| AACACATTTCGGAAATGATG+AGG | - | chr3.4:98301720-98301739 | MS.gene064801:CDS | 35.0% | |
| AACATTTACACCAACACTTG+CGG | + | chr3.4:98301317-98301336 | None:intergenic | 35.0% | |
| ACTCCTGAAGCACAAAAAAT+GGG | + | chr3.4:98300947-98300966 | None:intergenic | 35.0% | |
| ATGGATCACAAAACTTCCTA+CGG | - | chr3.4:98301108-98301127 | MS.gene064801:CDS | 35.0% | |
| ATGTGTGACTCTGATTTACA+CGG | + | chr3.4:98301286-98301305 | None:intergenic | 35.0% | |
| GTATCAACTGAATCACAAGT+GGG | + | chr3.4:98301994-98302013 | None:intergenic | 35.0% | |
| GTGCTTATACAACTTCTTCT+GGG | - | chr3.4:98302079-98302098 | MS.gene064801:CDS | 35.0% | |
| GTTGTATAAGCACCCATATT+TGG | + | chr3.4:98302072-98302091 | None:intergenic | 35.0% | |
| ! | ACAAAAAATGGGCTTCAAGT+TGG | + | chr3.4:98300936-98300955 | None:intergenic | 35.0% |
| ! | ACCGTTGAAGCATAAGTTTT+AGG | + | chr3.4:98301964-98301983 | None:intergenic | 35.0% |
| ! | ACTTATGCTTCAACGGTTTT+TGG | - | chr3.4:98301967-98301986 | MS.gene064801:CDS | 35.0% |
| ! | CACTTGTGATTCAGTTGATA+CGG | - | chr3.4:98301993-98302012 | MS.gene064801:CDS | 35.0% |
| ! | TGGCTTGTGTTTCCAAATAT+GGG | - | chr3.4:98302057-98302076 | MS.gene064801:CDS | 35.0% |
| ! | TTTGAAACAGCTTCACAACT+TGG | - | chr3.4:98301604-98301623 | MS.gene064801:CDS | 35.0% |
| !! | AGAGAGTATTGGATTGATGA+TGG | - | chr3.4:98301838-98301857 | MS.gene064801:CDS | 35.0% |
| !! | GATGAGGATCTTGTTGTTAT+TGG | - | chr3.4:98301736-98301755 | MS.gene064801:CDS | 35.0% |
| !! | TTGGCTTGTGTTTCCAAATA+TGG | - | chr3.4:98302056-98302075 | MS.gene064801:CDS | 35.0% |
| CAAAACCTGAGAATGTTGCA+TGG | - | chr3.4:98301932-98301951 | MS.gene064801:CDS | 40.0% | |
| CACTCCTGAAGCACAAAAAA+TGG | + | chr3.4:98300948-98300967 | None:intergenic | 40.0% | |
| CGTATCAACTGAATCACAAG+TGG | + | chr3.4:98301995-98302014 | None:intergenic | 40.0% | |
| GAATGCAGCTTCATCAAATC+TGG | + | chr3.4:98301680-98301699 | None:intergenic | 40.0% | |
| GATTCTTCGGTTACTAGTGT+AGG | + | chr3.4:98300899-98300918 | None:intergenic | 40.0% | |
| GCATAAAAAGGCTTAACCGT+AGG | + | chr3.4:98301127-98301146 | None:intergenic | 40.0% | |
| GGAGCTAAACCCATTGAAAT+TGG | + | chr3.4:98302106-98302125 | None:intergenic | 40.0% | |
| GGTGCTTATACAACTTCTTC+TGG | - | chr3.4:98302078-98302097 | MS.gene064801:CDS | 40.0% | |
| GTATGAGTTACCTGAACTTG+AGG | - | chr3.4:98302026-98302045 | MS.gene064801:CDS | 40.0% | |
| GTTACAACTTTCGACTGTGT+TGG | - | chr3.4:98301334-98301353 | MS.gene064801:CDS | 40.0% | |
| GTTGGCGTAAATGATTCTGT+CGG | + | chr3.4:98301263-98301282 | None:intergenic | 40.0% | |
| TGTCTTCCTCCGGTTTAATA+CGG | + | chr3.4:98301408-98301427 | None:intergenic | 40.0% | |
| TGTGTGACTCTGATTTACAC+GGG | + | chr3.4:98301285-98301304 | None:intergenic | 40.0% | |
| TGTTCAACTCCAACTCTTGT+CGG | - | chr3.4:98302150-98302169 | MS.gene064801:CDS | 40.0% | |
| TTACCACGGAGCCATATTAT+TGG | - | chr3.4:98301570-98301589 | MS.gene064801:CDS | 40.0% | |
| TTGGCGTAAATGATTCTGTC+GGG | + | chr3.4:98301262-98301281 | None:intergenic | 40.0% | |
| ! | AAATGCATGCCACTTAGGTT+TGG | - | chr3.4:98301907-98301926 | MS.gene064801:CDS | 40.0% |
| ! | ATCTGAGATAGTAACCTCTG+AGG | + | chr3.4:98300996-98301015 | None:intergenic | 40.0% |
| ! | GAGGTGAAATGAGAGAGTAT+TGG | - | chr3.4:98301827-98301846 | MS.gene064801:CDS | 40.0% |
| ! | TTGTCAAATGCATGCCACTT+AGG | - | chr3.4:98301902-98301921 | MS.gene064801:CDS | 40.0% |
| ! | TTTTGTGCTTCAGGAGTGAA+AGG | - | chr3.4:98300950-98300969 | MS.gene064801:CDS | 40.0% |
| !! | AATGGTGAGTCATTTTCAGC+TGG | + | chr3.4:98301046-98301065 | None:intergenic | 40.0% |
| !! | CTTCTGGGACCAATTTCAAT+GGG | - | chr3.4:98302094-98302113 | MS.gene064801:CDS | 40.0% |
| !! | CTTGTTGTTATTGGTGAACC+TGG | - | chr3.4:98301745-98301764 | MS.gene064801:CDS | 40.0% |
| !! | GGGCTTCAAGTTGGTAATTT+GGG | + | chr3.4:98300927-98300946 | None:intergenic | 40.0% |
| !! | TCTTCTGGGACCAATTTCAA+TGG | - | chr3.4:98302093-98302112 | MS.gene064801:CDS | 40.0% |
| !! | TGAGTCATTTTCAGCTGGTT+TGG | + | chr3.4:98301041-98301060 | None:intergenic | 40.0% |
| !! | TGGGCTTCAAGTTGGTAATT+TGG | + | chr3.4:98300928-98300947 | None:intergenic | 40.0% |
| !!! | AAGCCCATTTTTTGTGCTTC+AGG | - | chr3.4:98300941-98300960 | MS.gene064801:CDS | 40.0% |
| !!! | GGTTTTGAACCAAACCTAAG+TGG | + | chr3.4:98301919-98301938 | None:intergenic | 40.0% |
| AGATTCAATTTCGGCACGAC+TGG | + | chr3.4:98301218-98301237 | None:intergenic | 45.0% | |
| AGTGACAACTTTGTCCTCAG+AGG | - | chr3.4:98300979-98300998 | MS.gene064801:CDS | 45.0% | |
| ATAAAGTACGCCGCAAGTGT+TGG | - | chr3.4:98301304-98301323 | MS.gene064801:CDS | 45.0% | |
| ATTAAACCGGAGGAAGACAG+TGG | - | chr3.4:98301409-98301428 | MS.gene064801:CDS | 45.0% | |
| CAATCGTTCACCTCAAGTTC+AGG | + | chr3.4:98302039-98302058 | None:intergenic | 45.0% | |
| CTGAACTTGAGGTGAACGAT+TGG | - | chr3.4:98302037-98302056 | MS.gene064801:CDS | 45.0% | |
| GTAGCTCGGGAACTTCATTT+AGG | + | chr3.4:98301471-98301490 | None:intergenic | 45.0% | |
| GTGGCTGGACTTAAAGTAAC+CGG | - | chr3.4:98301505-98301524 | MS.gene064801:CDS | 45.0% | |
| GTTATTGGGAAACGTGTGAG+AGG | - | chr3.4:98301808-98301827 | MS.gene064801:CDS | 45.0% | |
| GTTCAACTCCAACTCTTGTC+GGG | - | chr3.4:98302151-98302170 | MS.gene064801:CDS | 45.0% | |
| GTTTCTTTCCACATAGGCAG+TGG | - | chr3.4:98301529-98301548 | MS.gene064801:CDS | 45.0% | |
| TCGTGTCTCGGTCTCAAATA+TGG | - | chr3.4:98301439-98301458 | MS.gene064801:CDS | 45.0% | |
| TCTCTCCATGCAACATTCTC+AGG | + | chr3.4:98301940-98301959 | None:intergenic | 45.0% | |
| TGACTCTGATTTACACGGGT+TGG | + | chr3.4:98301281-98301300 | None:intergenic | 45.0% | |
| ! | ATAGGCACACTAGCTTCACT+CGG | - | chr3.4:98301175-98301194 | MS.gene064801:CDS | 45.0% |
| ! | TGAACCTGGTCGTTACTTTG+CGG | - | chr3.4:98301759-98301778 | MS.gene064801:CDS | 45.0% |
| ! | TGGTCGTTACTTTGCGGAAA+CGG | - | chr3.4:98301765-98301784 | MS.gene064801:CDS | 45.0% |
| !! | ATCAGCAGCTTTGAGTAGCT+CGG | + | chr3.4:98301485-98301504 | None:intergenic | 45.0% |
| !! | ATTGGTGGTGGATTCACTTC+TGG | - | chr3.4:98301652-98301671 | MS.gene064801:CDS | 45.0% |
| ACCGGCGTTTCTTTCCACAT+AGG | - | chr3.4:98301523-98301542 | MS.gene064801:CDS | 50.0% | |
| CTTCCTCCGGTTTAATACGG+AGG | + | chr3.4:98301405-98301424 | None:intergenic | 50.0% | |
| GCCTATGTGGAAAGAAACGC+CGG | + | chr3.4:98301527-98301546 | None:intergenic | 50.0% | |
| GCTACTCAAAGCTGCTGATG+TGG | - | chr3.4:98301486-98301505 | MS.gene064801:CDS | 50.0% | |
| GCTCCTCCTCCGTATTAAAC+CGG | - | chr3.4:98301396-98301415 | MS.gene064801:CDS | 50.0% | |
| GTTTCCGCAAAGTAACGACC+AGG | + | chr3.4:98301766-98301785 | None:intergenic | 50.0% | |
| TCTTTCCACATAGGCAGTGG+AGG | - | chr3.4:98301532-98301551 | MS.gene064801:CDS | 50.0% | |
| TGGCCAATAATATGGCTCCG+TGG | + | chr3.4:98301576-98301595 | None:intergenic | 50.0% | |
| ! | TCCGTGGTAAGCTTTTGCGT+CGG | + | chr3.4:98301560-98301579 | None:intergenic | 50.0% |
| !! | TCAGCAGCTTTGAGTAGCTC+GGG | + | chr3.4:98301484-98301503 | None:intergenic | 50.0% |
| ACGACTGGCGCAGTCGAAAT+TGG | + | chr3.4:98301203-98301222 | None:intergenic | 55.0% | |
| CCTCCGGTTTAATACGGAGG+AGG | + | chr3.4:98301402-98301421 | None:intergenic | 55.0% | |
| CCTCCTCCGTATTAAACCGG+AGG | - | chr3.4:98301399-98301418 | MS.gene064801:CDS | 55.0% | |
| CTCAAAGCTGCTGATGTGGC+TGG | - | chr3.4:98301490-98301509 | MS.gene064801:CDS | 55.0% | |
| GCCGACGCAAAAGCTTACCA+CGG | - | chr3.4:98301556-98301575 | MS.gene064801:CDS | 55.0% | |
| ! | GGAGGAGGAGCTCGCATTTT+GGG | + | chr3.4:98301387-98301406 | None:intergenic | 55.0% |
| AGTGGAGCGCGTTCGTGTCT+CGG | - | chr3.4:98301427-98301446 | MS.gene064801:CDS | 60.0% | |
| ! | CGGAGGAGGAGCTCGCATTT+TGG | + | chr3.4:98301388-98301407 | None:intergenic | 60.0% |
| CGCGCTCCACTGTCTTCCTC+CGG | + | chr3.4:98301418-98301437 | None:intergenic | 65.0% | |
| CGGCTCCTCCACTGCCTATG+TGG | + | chr3.4:98301540-98301559 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 98300893 | 98302179 | 98300893 | ID=MS.gene064801 |
| chr3.4 | mRNA | 98300893 | 98302179 | 98300893 | ID=MS.gene064801.t1;Parent=MS.gene064801 |
| chr3.4 | exon | 98300893 | 98302179 | 98300893 | ID=MS.gene064801.t1.exon1;Parent=MS.gene064801.t1 |
| chr3.4 | CDS | 98300893 | 98302179 | 98300893 | ID=cds.MS.gene064801.t1;Parent=MS.gene064801.t1 |
| Gene Sequence |
| Protein sequence |
