Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064850.t1 | AFK36584.1 | 99.2 | 122 | 1 | 0 | 1 | 122 | 1 | 122 | 6.20E-38 | 167.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064850.t1 | P26585 | 63.6 | 121 | 43 | 1 | 1 | 121 | 1 | 120 | 3.1e-30 | 132.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064850.t1 | I3S988 | 95.1 | 122 | 6 | 0 | 1 | 122 | 1 | 122 | 4.5e-38 | 167.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064850.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03201 | MS.gene064850 | PPI |
| MS.gene013786 | MS.gene064850 | PPI |
| MS.gene064850 | MS.gene02572 | PPI |
| MS.gene46264 | MS.gene064850 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064850.t1 | MTR_3g115580 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 9.43e-103 | 291 |
| MS.gene064850.t1 | MTR_8g073345 | 60.432 | 139 | 46 | 5 | 5 | 143 | 3 | 132 | 7.41e-41 | 134 |
| MS.gene064850.t1 | MTR_5g024180 | 57.895 | 133 | 48 | 4 | 5 | 137 | 3 | 127 | 1.80e-37 | 125 |
| MS.gene064850.t1 | MTR_8g073345 | 60.150 | 133 | 44 | 5 | 5 | 137 | 3 | 126 | 2.25e-37 | 125 |
| MS.gene064850.t1 | MTR_7g068280 | 70.297 | 101 | 28 | 1 | 41 | 141 | 47 | 145 | 7.42e-36 | 122 |
| MS.gene064850.t1 | MTR_7g082820 | 63.855 | 83 | 29 | 1 | 34 | 116 | 2 | 83 | 1.59e-29 | 105 |
| MS.gene064850.t1 | MTR_1g115220 | 60.000 | 80 | 32 | 0 | 41 | 120 | 98 | 177 | 7.05e-27 | 100 |
| MS.gene064850.t1 | MTR_5g024180 | 57.778 | 90 | 34 | 2 | 51 | 137 | 2 | 90 | 7.39e-24 | 89.7 |
| MS.gene064850.t1 | MTR_4g094622 | 47.674 | 86 | 45 | 0 | 35 | 120 | 54 | 139 | 5.44e-23 | 89.0 |
| MS.gene064850.t1 | MTR_1g022345 | 46.667 | 75 | 39 | 1 | 41 | 115 | 554 | 627 | 1.42e-12 | 64.7 |
| MS.gene064850.t1 | MTR_8g099305 | 35.714 | 98 | 60 | 1 | 41 | 138 | 262 | 356 | 3.77e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064850.t1 | AT1G20693 | 66.013 | 153 | 41 | 4 | 1 | 153 | 1 | 142 | 9.88e-54 | 167 |
| MS.gene064850.t1 | AT1G20693 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.46e-47 | 151 |
| MS.gene064850.t1 | AT1G20693 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.51e-47 | 151 |
| MS.gene064850.t1 | AT1G20696 | 63.504 | 137 | 38 | 3 | 1 | 137 | 1 | 125 | 8.19e-46 | 146 |
| MS.gene064850.t1 | AT2G17560 | 54.483 | 145 | 54 | 4 | 1 | 144 | 1 | 134 | 2.04e-41 | 135 |
| MS.gene064850.t1 | AT2G17560 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 4.95e-41 | 134 |
| MS.gene064850.t1 | AT2G17560 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 4.95e-41 | 134 |
| MS.gene064850.t1 | AT1G20696 | 60.800 | 125 | 39 | 2 | 1 | 125 | 1 | 115 | 8.56e-41 | 134 |
| MS.gene064850.t1 | AT1G20696 | 63.559 | 118 | 33 | 2 | 1 | 118 | 1 | 108 | 1.07e-40 | 134 |
| MS.gene064850.t1 | AT3G51880 | 65.517 | 116 | 33 | 2 | 26 | 141 | 36 | 144 | 1.49e-39 | 132 |
| MS.gene064850.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene064850.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene064850.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene064850.t1 | AT3G51880 | 69.388 | 98 | 25 | 1 | 40 | 137 | 48 | 140 | 2.41e-37 | 125 |
| MS.gene064850.t1 | AT1G20696 | 66.327 | 98 | 29 | 2 | 53 | 150 | 1 | 94 | 1.56e-33 | 114 |
| MS.gene064850.t1 | AT4G35570 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.12e-32 | 112 |
| MS.gene064850.t1 | AT4G35570 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.12e-32 | 112 |
| MS.gene064850.t1 | AT1G20696 | 64.706 | 85 | 28 | 1 | 53 | 137 | 1 | 83 | 1.80e-28 | 101 |
| MS.gene064850.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene064850.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene064850.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene064850.t1 | AT2G34450 | 37.000 | 100 | 47 | 2 | 45 | 143 | 63 | 147 | 6.07e-18 | 75.9 |
| MS.gene064850.t1 | AT5G23420 | 46.739 | 92 | 41 | 2 | 26 | 110 | 89 | 179 | 1.31e-15 | 71.6 |
| MS.gene064850.t1 | AT4G23800 | 45.000 | 80 | 39 | 2 | 41 | 118 | 375 | 451 | 9.97e-12 | 62.0 |
| MS.gene064850.t1 | AT4G23800 | 45.000 | 80 | 39 | 2 | 41 | 118 | 369 | 445 | 1.04e-11 | 62.0 |
Find 46 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTCTCTTAGGCTTGTT+AGG | 0.179440 | 3.3:-94416355 | None:intergenic |
| TTTCTTGTTATATGCCTTCA+TGG | 0.203700 | 3.3:-94417035 | None:intergenic |
| TTACTTAGCATCGGCTTTCT+TGG | 0.250421 | 3.3:-94416067 | None:intergenic |
| CTTGGATTCACCCTTGGACT+TGG | 0.277403 | 3.3:-94416049 | None:intergenic |
| AAAGCACTTGGAGGTCTCTT+AGG | 0.309499 | 3.3:-94416364 | None:intergenic |
| TTAGGCTTGTTAGGGTCCTT+TGG | 0.339552 | 3.3:-94416346 | None:intergenic |
| TTTGGTTCCTTTCCCTTGGC+TGG | 0.339914 | 3.3:-94416328 | None:intergenic |
| GCAGACACAGCTTTGTTGTC+AGG | 0.342321 | 3.3:-94416741 | None:intergenic |
| GTCCTTTGGTTCCTTTCCCT+TGG | 0.359297 | 3.3:-94416332 | None:intergenic |
| GGCTGGTTTCCTTCCGCCCT+TGG | 0.371407 | 3.3:-94416311 | None:intergenic |
| GCTGTTGAGGAAGAAGAATC+TGG | 0.372128 | 3.3:+94417156 | MS.gene064850:CDS |
| TTGCAGGTGGGCAAAGCTGC+TGG | 0.380613 | 3.3:+94416840 | MS.gene064850:intron |
| GGCTTTCTTGGATTCACCCT+TGG | 0.397041 | 3.3:-94416055 | None:intergenic |
| TTTCCTTCCGCCCTTGGTAG+TGG | 0.445999 | 3.3:-94416305 | None:intergenic |
| GCAAAGCTGCTGGAGCAAAA+TGG | 0.450601 | 3.3:+94416850 | MS.gene064850:CDS |
| GAAGGCATATAACAAGAAAC+AGG | 0.452913 | 3.3:+94417039 | MS.gene064850:CDS |
| GAGGTCTCTTAGGCTTGTTA+GGG | 0.458151 | 3.3:-94416354 | None:intergenic |
| TCTTCTTCCTCAACAGCAGC+TGG | 0.462822 | 3.3:-94417150 | None:intergenic |
| GGCGGCGCCCTTCTTATTCA+CGG | 0.463220 | 3.3:-94416284 | None:intergenic |
| CAGACACAGCTTTGTTGTCA+GGG | 0.494732 | 3.3:-94416740 | None:intergenic |
| ATGCAGCAAAAGCAGAGAAA+AGG | 0.511362 | 3.3:+94416993 | MS.gene064850:CDS |
| TGAAGGTCCAGCTGCTGTTG+AGG | 0.526952 | 3.3:+94417143 | MS.gene064850:CDS |
| GAAGGGCGCCGCCACTACCA+AGG | 0.539172 | 3.3:+94416294 | MS.gene064850:CDS |
| GGGCGGAAGGAAACCAGCCA+AGG | 0.544457 | 3.3:+94416315 | MS.gene064850:CDS |
| TAGGCTTGCCGTGAATAAGA+AGG | 0.545546 | 3.3:+94416276 | MS.gene064850:intron |
| AAGGAAACCAGCCAAGGGAA+AGG | 0.549929 | 3.3:+94416321 | MS.gene064850:CDS |
| TGTGATTGTTGTCAGGCTGA+AGG | 0.555256 | 3.3:+94417126 | MS.gene064850:intron |
| GGATTGAACTTACTTAGCAT+CGG | 0.556269 | 3.3:-94416076 | None:intergenic |
| AAAACGAAGAAAGCACTTGG+AGG | 0.558317 | 3.3:-94416373 | None:intergenic |
| AGCCAAGGGAAAGGAACCAA+AGG | 0.561691 | 3.3:+94416330 | MS.gene064850:CDS |
| CTGTTGAGGAAGAAGAATCT+GGG | 0.568023 | 3.3:+94417157 | MS.gene064850:CDS |
| AAGGGCGCCGCCACTACCAA+GGG | 0.571773 | 3.3:+94416295 | MS.gene064850:CDS |
| CCGCCACTACCAAGGGCGGA+AGG | 0.572782 | 3.3:+94416302 | MS.gene064850:CDS |
| ATGAAAACGAAGAAAGCACT+TGG | 0.589018 | 3.3:-94416376 | None:intergenic |
| CATGAAAGGAGCCAAGTCCA+AGG | 0.590256 | 3.3:+94416038 | None:intergenic |
| CCTTCCGCCCTTGGTAGTGG+CGG | 0.599374 | 3.3:-94416302 | None:intergenic |
| TGAAGTGCATGATGAGAATG+AGG | 0.606285 | 3.3:+94417191 | MS.gene064850:CDS |
| GGCGCCGCCACTACCAAGGG+CGG | 0.610298 | 3.3:+94416298 | MS.gene064850:CDS |
| AGGCTTGCCGTGAATAAGAA+GGG | 0.612713 | 3.3:+94416277 | MS.gene064850:intron |
| AGAATATGAGAAAACCATGA+AGG | 0.619628 | 3.3:+94417021 | MS.gene064850:CDS |
| TGAGAATGAGGATGATGATG+AGG | 0.623282 | 3.3:+94417203 | MS.gene064850:CDS |
| AATGAGGATGATGATGAGGA+TGG | 0.627725 | 3.3:+94417207 | MS.gene064850:CDS |
| ATGAAAGGAGCCAAGTCCAA+GGG | 0.636209 | 3.3:+94416039 | MS.gene064850:CDS |
| GGCGGAAGGAAACCAGCCAA+GGG | 0.638094 | 3.3:+94416316 | MS.gene064850:CDS |
| AGCAAAAGCAGAGAAAAGGA+AGG | 0.642820 | 3.3:+94416997 | MS.gene064850:CDS |
| TGATGAGGATGGCAGTGAAG+AGG | 0.697028 | 3.3:+94417218 | MS.gene064850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATTCAATTATAATAAT+TGG | - | chr3.3:94416512-94416531 | None:intergenic | 10.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | - | chr3.3:94416100-94416119 | None:intergenic | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | + | chr3.3:94416891-94416910 | MS.gene064850:intron | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | + | chr3.3:94416253-94416272 | MS.gene064850:intron | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | + | chr3.3:94416675-94416694 | MS.gene064850:intron | 20.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | + | chr3.3:94416686-94416705 | MS.gene064850:intron | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | + | chr3.3:94417119-94417138 | MS.gene064850:intron | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | + | chr3.3:94416146-94416165 | MS.gene064850:intron | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | + | chr3.3:94417079-94417098 | MS.gene064850:intron | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | + | chr3.3:94417078-94417097 | MS.gene064850:intron | 25.0% |
| ! | TTTGTTGAATTTCACTTTGT+AGG | + | chr3.3:94417261-94417280 | MS.gene064850:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | + | chr3.3:94416207-94416226 | MS.gene064850:intron | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | + | chr3.3:94416257-94416276 | MS.gene064850:intron | 25.0% |
| AGAATATGAGAAAACCATGA+AGG | + | chr3.3:94417021-94417040 | MS.gene064850:CDS | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | - | chr3.3:94416117-94416136 | None:intergenic | 30.0% | |
| ATAAAAATGTCAAAGTCCCA+CGG | - | chr3.3:94416639-94416658 | None:intergenic | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | + | chr3.3:94416685-94416704 | MS.gene064850:intron | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | + | chr3.3:94416145-94416164 | MS.gene064850:intron | 30.0% | |
| TAAATGCAAATTGGGTAACT+AGG | + | chr3.3:94417087-94417106 | MS.gene064850:intron | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | - | chr3.3:94416794-94416813 | None:intergenic | 30.0% | |
| ! | CATCTGTATATGAATTTTGC+AGG | + | chr3.3:94416824-94416843 | MS.gene064850:intron | 30.0% |
| ! | TGTATATGAATTTTGCAGGT+GGG | + | chr3.3:94416828-94416847 | MS.gene064850:intron | 30.0% |
| ! | TTTCTTGTTATATGCCTTCA+TGG | - | chr3.3:94417038-94417057 | None:intergenic | 30.0% |
| ATATGCTGTGATTGAACGTT+TGG | + | chr3.3:94416941-94416960 | MS.gene064850:intron | 35.0% | |
| CGTTCAATCACAGCATATAA+TGG | - | chr3.3:94416939-94416958 | None:intergenic | 35.0% | |
| GCATATAACAAGAAACAGGT+CGG | + | chr3.3:94417043-94417062 | MS.gene064850:intron | 35.0% | |
| GGATTGAACTTACTTAGCAT+CGG | - | chr3.3:94416079-94416098 | None:intergenic | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | + | chr3.3:94416958-94416977 | MS.gene064850:intron | 35.0% | |
| TAAGGCCAGTAAAACAACAA+CGG | - | chr3.3:94416776-94416795 | None:intergenic | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | + | chr3.3:94417310-94417329 | MS.gene064850:intron | 35.0% | |
| ! | CAGTCATAACTGTTTTCACA+CGG | - | chr3.3:94416602-94416621 | None:intergenic | 35.0% |
| ! | CTGTATATGAATTTTGCAGG+TGG | + | chr3.3:94416827-94416846 | MS.gene064850:intron | 35.0% |
| ! | GAAGGCATATAACAAGAAAC+AGG | + | chr3.3:94417039-94417058 | MS.gene064850:CDS | 35.0% |
| ! | GTCTTTATAGGGAGGATTTT+AGG | + | chr3.3:94416697-94416716 | MS.gene064850:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | - | chr3.3:94416379-94416398 | None:intergenic | 35.0% |
| !! | CGTTTTATTCGCTTTCGATT+TGG | + | chr3.3:94416124-94416143 | MS.gene064850:intron | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | + | chr3.3:94416713-94416732 | MS.gene064850:CDS | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | + | chr3.3:94416768-94416787 | MS.gene064850:intron | 35.0% |
| AGCAAAAGCAGAGAAAAGGA+AGG | + | chr3.3:94416997-94417016 | MS.gene064850:CDS | 40.0% | |
| ATGCAGCAAAAGCAGAGAAA+AGG | + | chr3.3:94416993-94417012 | MS.gene064850:CDS | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | + | chr3.3:94417157-94417176 | MS.gene064850:CDS | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | + | chr3.3:94417191-94417210 | MS.gene064850:CDS | 40.0% | |
| TTCCTTATGTTTCATGCAGG+AGG | + | chr3.3:94417313-94417332 | MS.gene064850:intron | 40.0% | |
| TTTGTGTGGTCTTTATAGGG+AGG | + | chr3.3:94416689-94416708 | MS.gene064850:intron | 40.0% | |
| ! | AATGAGGATGATGATGAGGA+TGG | + | chr3.3:94417207-94417226 | MS.gene064850:CDS | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | - | chr3.3:94416183-94416202 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | - | chr3.3:94416591-94416610 | None:intergenic | 40.0% |
| ! | TGAGAATGAGGATGATGATG+AGG | + | chr3.3:94417203-94417222 | MS.gene064850:CDS | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | - | chr3.3:94416376-94416395 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | - | chr3.3:94416070-94416089 | None:intergenic | 40.0% |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | - | chr3.3:94416992-94417011 | None:intergenic | 40.0% |
| AGGCTTGCCGTGAATAAGAA+GGG | + | chr3.3:94416277-94416296 | MS.gene064850:intron | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | + | chr3.3:94416039-94416058 | MS.gene064850:CDS | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | - | chr3.3:94417318-94417337 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | + | chr3.3:94417316-94417335 | MS.gene064850:intron | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | + | chr3.3:94417156-94417175 | MS.gene064850:CDS | 45.0% | |
| GTGATTGAACGTTTGGTCTC+TGG | + | chr3.3:94416948-94416967 | MS.gene064850:intron | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | + | chr3.3:94416276-94416295 | MS.gene064850:intron | 45.0% | |
| TGCTGAGTTATGATGACCGT+GGG | + | chr3.3:94416620-94416639 | MS.gene064850:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | + | chr3.3:94417126-94417145 | MS.gene064850:intron | 45.0% | |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | - | chr3.3:94416367-94416386 | None:intergenic | 45.0% |
| !! | CAGACACAGCTTTGTTGTCA+GGG | - | chr3.3:94416743-94416762 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | - | chr3.3:94416357-94416376 | None:intergenic | 45.0% |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | - | chr3.3:94416349-94416368 | None:intergenic | 45.0% |
| AAGGAAACCAGCCAAGGGAA+AGG | + | chr3.3:94416321-94416340 | MS.gene064850:CDS | 50.0% | |
| AGCCAAGGGAAAGGAACCAA+AGG | + | chr3.3:94416330-94416349 | MS.gene064850:CDS | 50.0% | |
| CTGCTGAGTTATGATGACCG+TGG | + | chr3.3:94416619-94416638 | MS.gene064850:intron | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | - | chr3.3:94416052-94416071 | None:intergenic | 50.0% | |
| GCAAAGCTGCTGGAGCAAAA+TGG | + | chr3.3:94416850-94416869 | MS.gene064850:CDS | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | - | chr3.3:94416058-94416077 | None:intergenic | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | - | chr3.3:94417153-94417172 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | + | chr3.3:94417218-94417237 | MS.gene064850:CDS | 50.0% | |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | - | chr3.3:94416358-94416377 | None:intergenic | 50.0% |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | - | chr3.3:94416335-94416354 | None:intergenic | 50.0% |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | - | chr3.3:94416331-94416350 | None:intergenic | 50.0% |
| !! | GCAGACACAGCTTTGTTGTC+AGG | - | chr3.3:94416744-94416763 | None:intergenic | 50.0% |
| TGAAGGTCCAGCTGCTGTTG+AGG | + | chr3.3:94417143-94417162 | MS.gene064850:CDS | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | - | chr3.3:94416308-94416327 | None:intergenic | 55.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | + | chr3.3:94416316-94416335 | MS.gene064850:CDS | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | - | chr3.3:94416287-94416306 | None:intergenic | 60.0% | |
| TTGCAGGTGGGCAAAGCTGC+TGG | + | chr3.3:94416840-94416859 | MS.gene064850:intron | 60.0% | |
| GGGCGGAAGGAAACCAGCCA+AGG | + | chr3.3:94416315-94416334 | MS.gene064850:CDS | 65.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | + | chr3.3:94416295-94416314 | MS.gene064850:CDS | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | - | chr3.3:94416305-94416324 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | - | chr3.3:94416314-94416333 | None:intergenic | 65.0% |
| CCGCCACTACCAAGGGCGGA+AGG | + | chr3.3:94416302-94416321 | MS.gene064850:CDS | 70.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | + | chr3.3:94416294-94416313 | MS.gene064850:CDS | 70.0% |
| GGCGCCGCCACTACCAAGGG+CGG | + | chr3.3:94416298-94416317 | MS.gene064850:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 94416039 | 94417349 | 94416039 | ID=MS.gene064850 |
| chr3.3 | mRNA | 94416039 | 94417349 | 94416039 | ID=MS.gene064850.t1;Parent=MS.gene064850 |
| chr3.3 | exon | 94416039 | 94416085 | 94416039 | ID=MS.gene064850.t1.exon1;Parent=MS.gene064850.t1 |
| chr3.3 | CDS | 94416039 | 94416085 | 94416039 | ID=cds.MS.gene064850.t1;Parent=MS.gene064850.t1 |
| chr3.3 | exon | 94416279 | 94416398 | 94416279 | ID=MS.gene064850.t1.exon2;Parent=MS.gene064850.t1 |
| chr3.3 | CDS | 94416279 | 94416398 | 94416279 | ID=cds.MS.gene064850.t1;Parent=MS.gene064850.t1 |
| chr3.3 | exon | 94416707 | 94416764 | 94416707 | ID=MS.gene064850.t1.exon3;Parent=MS.gene064850.t1 |
| chr3.3 | CDS | 94416707 | 94416764 | 94416707 | ID=cds.MS.gene064850.t1;Parent=MS.gene064850.t1 |
| chr3.3 | exon | 94416846 | 94416890 | 94416846 | ID=MS.gene064850.t1.exon4;Parent=MS.gene064850.t1 |
| chr3.3 | CDS | 94416846 | 94416890 | 94416846 | ID=cds.MS.gene064850.t1;Parent=MS.gene064850.t1 |
| chr3.3 | exon | 94416980 | 94417060 | 94416980 | ID=MS.gene064850.t1.exon5;Parent=MS.gene064850.t1 |
| chr3.3 | CDS | 94416980 | 94417060 | 94416980 | ID=cds.MS.gene064850.t1;Parent=MS.gene064850.t1 |
| chr3.3 | exon | 94417141 | 94417239 | 94417141 | ID=MS.gene064850.t1.exon6;Parent=MS.gene064850.t1 |
| chr3.3 | CDS | 94417141 | 94417239 | 94417141 | ID=cds.MS.gene064850.t1;Parent=MS.gene064850.t1 |
| chr3.3 | exon | 94417332 | 94417349 | 94417332 | ID=MS.gene064850.t1.exon7;Parent=MS.gene064850.t1 |
| chr3.3 | CDS | 94417332 | 94417349 | 94417332 | ID=cds.MS.gene064850.t1;Parent=MS.gene064850.t1 |
| Gene Sequence |
| Protein sequence |
